Metagenome / Metatranscriptome Family F086714

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086714
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	109 residues
Representative Sequence	VANEIRVIVIDPNEIDRYARAIARIADKGHPAGSIELVRAVNTYGTAFQFLVMRRGPDYGRALGMAAGDRALSLVARRDDAETLVAGDIGEIHERVCLAEEEAQARERDQDSA
Number of Associated Samples	61
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	66.97 %
% of genes near scaffold ends (potentially truncated)	38.18 %
% of genes from short scaffolds (< 2000 bps)	87.27 %
Associated GOLD sequencing projects	59
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (54.545 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (36.364 % of family members)
Environment Ontology (ENVO)	Unclassified (38.182 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.455 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 74.34% β-sheet: 5.31% Coil/Unstructured: 20.35%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01179	Cu_amine_oxid	18.18
PF00175	NAD_binding_1	13.64
PF00970	FAD_binding_6	9.09
PF02728	Cu_amine_oxidN3	1.82
PF13374	TPR_10	0.91
PF00196	GerE	0.91
PF01774	UreD	0.91
PF00174	Oxidored_molyb	0.91
PF01546	Peptidase_M20	0.91
PF01096	TFIIS_C	0.91
PF13147	Obsolete Pfam Family	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG3733	Cu2+-containing amine oxidase	Secondary metabolites biosynthesis, transport and catabolism [Q]	20.00
COG0829	Urease accessory protein UreH	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG1594	DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS	Transcription [K]	0.91
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.91
COG3915	Uncharacterized conserved protein	Function unknown [S]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.55 %
Unclassified	root	N/A	45.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.55 %
Unclassified	root	N/A	45.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.55 %
Unclassified	root	N/A	45.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.45 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	15.45 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.45 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	15.45 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.45 %
Thermomicrobia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	7.27 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	1.82 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.45 %
Sphaerobacteridae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae	7.27 %
unclassified Chloroflexia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia	1.82 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.45 %
Sphaerobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales	7.27 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1.82 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.45 %
Sphaerobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae	7.27 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1.82 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.45 %
Sphaerobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae	7.27 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1.82 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.45 %
Sphaerobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter	6.36 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1.82 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.45 %
Sphaerobacter thermophilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	6.36 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1.82 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_103665552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1435	Open in IMG/M
3300000956\|JGI10216J12902_114790229	Not Available	800	Open in IMG/M
3300004081\|Ga0063454_100134559	All Organisms → cellular organisms → Bacteria	1270	Open in IMG/M
3300004114\|Ga0062593_101475813	Not Available	731	Open in IMG/M
3300004153\|Ga0063455_100418921	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300004463\|Ga0063356_100147722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	2672	Open in IMG/M
3300004643\|Ga0062591_102438207	Not Available	549	Open in IMG/M
3300005329\|Ga0070683_100238198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	1730	Open in IMG/M
3300005530\|Ga0070679_100675934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	975	Open in IMG/M
3300005562\|Ga0058697_10118595	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300006871\|Ga0075434_102121517	Not Available	566	Open in IMG/M
3300006876\|Ga0079217_10127787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1192	Open in IMG/M
3300006918\|Ga0079216_10253075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1008	Open in IMG/M
3300006918\|Ga0079216_10744842	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	708	Open in IMG/M
3300007521\|Ga0105044_10295173	All Organisms → cellular organisms → Bacteria	1539	Open in IMG/M
3300007790\|Ga0105679_10201754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	1350	Open in IMG/M
3300007790\|Ga0105679_10283037	All Organisms → cellular organisms → Bacteria	1035	Open in IMG/M
3300009094\|Ga0111539_12561012	Not Available	592	Open in IMG/M
3300009789\|Ga0126307_10222857	All Organisms → cellular organisms → Bacteria	1514	Open in IMG/M
3300009789\|Ga0126307_10369155	All Organisms → cellular organisms → Bacteria	1156	Open in IMG/M
3300009789\|Ga0126307_10481911	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300009840\|Ga0126313_10076308	All Organisms → cellular organisms → Bacteria	2420	Open in IMG/M
3300009840\|Ga0126313_10107675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	2059	Open in IMG/M
3300009840\|Ga0126313_10244995	All Organisms → cellular organisms → Bacteria	1389	Open in IMG/M
3300009840\|Ga0126313_10363645	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
3300009840\|Ga0126313_10386854	Not Available	1108	Open in IMG/M
3300009840\|Ga0126313_10518789	Not Available	955	Open in IMG/M
3300009840\|Ga0126313_10534270	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300010036\|Ga0126305_10035654	All Organisms → cellular organisms → Bacteria	2744	Open in IMG/M
3300010036\|Ga0126305_10093899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	1790	Open in IMG/M
3300010036\|Ga0126305_10612449	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300010036\|Ga0126305_11002812	Not Available	573	Open in IMG/M
3300010038\|Ga0126315_10460888	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300010038\|Ga0126315_10905621	Not Available	586	Open in IMG/M
3300010039\|Ga0126309_10863907	Not Available	596	Open in IMG/M
3300010039\|Ga0126309_10888076	Not Available	589	Open in IMG/M
3300010039\|Ga0126309_10932506	Not Available	578	Open in IMG/M
3300010039\|Ga0126309_11278559	Not Available	507	Open in IMG/M
3300010040\|Ga0126308_10050056	All Organisms → cellular organisms → Bacteria	2423	Open in IMG/M
3300010040\|Ga0126308_10051996	All Organisms → cellular organisms → Bacteria	2382	Open in IMG/M
3300010040\|Ga0126308_11048184	Not Available	573	Open in IMG/M
3300010040\|Ga0126308_11260468	Not Available	524	Open in IMG/M
3300010041\|Ga0126312_10049301	All Organisms → cellular organisms → Bacteria	2819	Open in IMG/M
3300010041\|Ga0126312_11043364	Not Available	599	Open in IMG/M
3300010042\|Ga0126314_10096150	All Organisms → cellular organisms → Bacteria	2005	Open in IMG/M
3300010042\|Ga0126314_10435059	Not Available	948	Open in IMG/M
3300010042\|Ga0126314_10532649	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300010042\|Ga0126314_10604342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	800	Open in IMG/M
3300010042\|Ga0126314_10625609	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300010044\|Ga0126310_10164290	All Organisms → cellular organisms → Bacteria	1427	Open in IMG/M
3300010044\|Ga0126310_10238689	All Organisms → cellular organisms → Bacteria	1219	Open in IMG/M
3300010044\|Ga0126310_10840741	Not Available	709	Open in IMG/M
3300010044\|Ga0126310_11329812	Not Available	582	Open in IMG/M
3300010045\|Ga0126311_11051119	Not Available	668	Open in IMG/M
3300010045\|Ga0126311_11359863	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300010166\|Ga0126306_10060663	All Organisms → cellular organisms → Bacteria	2644	Open in IMG/M
3300010166\|Ga0126306_11007414	Not Available	679	Open in IMG/M
3300012043\|Ga0136631_10376355	Not Available	573	Open in IMG/M
3300012212\|Ga0150985_105685251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1702	Open in IMG/M
3300012212\|Ga0150985_114457363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	745	Open in IMG/M
3300012212\|Ga0150985_120423084	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300012212\|Ga0150985_121534870	All Organisms → cellular organisms → Bacteria	1757	Open in IMG/M
3300012469\|Ga0150984_108006328	Not Available	550	Open in IMG/M
3300012469\|Ga0150984_109207725	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M
3300012469\|Ga0150984_117460504	Not Available	595	Open in IMG/M
3300012680\|Ga0136612_10004869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	6399	Open in IMG/M
3300012680\|Ga0136612_10346144	Not Available	754	Open in IMG/M
3300012682\|Ga0136611_10647141	Not Available	649	Open in IMG/M
3300014969\|Ga0157376_11143525	Not Available	805	Open in IMG/M
3300017695\|Ga0180121_10431617	Not Available	515	Open in IMG/M
3300017787\|Ga0183260_10132395	All Organisms → cellular organisms → Bacteria	1786	Open in IMG/M
3300017789\|Ga0136617_10039934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae	4172	Open in IMG/M
3300017789\|Ga0136617_11470257	Not Available	508	Open in IMG/M
3300017965\|Ga0190266_11247576	Not Available	518	Open in IMG/M
3300018429\|Ga0190272_11299207	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300018465\|Ga0190269_10138928	Not Available	1242	Open in IMG/M
3300018465\|Ga0190269_11344979	Not Available	575	Open in IMG/M
3300018465\|Ga0190269_12017248	Not Available	503	Open in IMG/M
3300018466\|Ga0190268_11720580	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300018476\|Ga0190274_12150960	Not Available	655	Open in IMG/M
3300018476\|Ga0190274_12905174	Not Available	575	Open in IMG/M
3300018910\|Ga0193598_1017433	All Organisms → cellular organisms → Bacteria	1929	Open in IMG/M
3300018910\|Ga0193598_1122172	Not Available	594	Open in IMG/M
3300018920\|Ga0190273_11549975	Not Available	589	Open in IMG/M
3300019377\|Ga0190264_10609494	Not Available	781	Open in IMG/M
3300019767\|Ga0190267_10739399	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300020070\|Ga0206356_11904514	Not Available	542	Open in IMG/M
3300024430\|Ga0196962_10109445	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300025921\|Ga0207652_11758535	Not Available	525	Open in IMG/M
3300028705\|Ga0307276_10024316	All Organisms → cellular organisms → Bacteria	1214	Open in IMG/M
3300031091\|Ga0308201_10042500	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300031548\|Ga0307408_100904827	Not Available	808	Open in IMG/M
3300031548\|Ga0307408_102372388	Not Available	515	Open in IMG/M
3300031731\|Ga0307405_11224389	Not Available	650	Open in IMG/M
3300031824\|Ga0307413_11275361	Not Available	642	Open in IMG/M
3300031903\|Ga0307407_10946411	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300031903\|Ga0307407_11117673	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300031938\|Ga0308175_100135413	All Organisms → cellular organisms → Bacteria	2337	Open in IMG/M
3300031938\|Ga0308175_102276398	Not Available	607	Open in IMG/M
3300031949\|Ga0214473_11232802	Not Available	772	Open in IMG/M
3300031995\|Ga0307409_100379880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1343	Open in IMG/M
3300031995\|Ga0307409_100525596	All Organisms → cellular organisms → Bacteria	1157	Open in IMG/M
3300031995\|Ga0307409_102637870	Not Available	531	Open in IMG/M
3300032004\|Ga0307414_11339527	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300032004\|Ga0307414_12252614	Not Available	509	Open in IMG/M
3300032005\|Ga0307411_10139620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1785	Open in IMG/M
3300032126\|Ga0307415_100070369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2456	Open in IMG/M
3300032159\|Ga0268251_10056867	All Organisms → cellular organisms → Bacteria	1299	Open in IMG/M
3300033551\|Ga0247830_10974642	Not Available	676	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.36%
Host-Associated	Host-Associated	23.64%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.18%
Plants	Host-Associated → Plants	23.64%
Aquatic	Environmental → Aquatic	8.18%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.27%
Freshwater	Environmental → Aquatic → Freshwater	8.18%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.55%
Phylloplane	Host-Associated → Plants → Phylloplane	1.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.55%
Ice	Environmental → Aquatic → Freshwater → Ice	8.18%
Loam	Environmental → Terrestrial → Soil → Loam	4.55%
Sand	Environmental → Terrestrial → Soil → Sand	4.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.64%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.73%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	1.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.55%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	7.27%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.55%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	4.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.64%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.82%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.82%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	1.82%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	0.91%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	36.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	11.82%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	7.27%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	3.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.73%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.73%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	2.73%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	1.82%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.82%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	1.82%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.91%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007521	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-01	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300012043	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ601 (22.06)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012680	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ224A (23.06)	Environmental	Open in IMG/M
3300012682	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ223 (23.06)	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300017695	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ540 (21.06) (version 2)	Environmental	Open in IMG/M
3300017787	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018910	Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 18 hrs after wetting v1	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024430	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1036655521	3300000956	Soil	VSHETRIFLVDPKEIDRYARAIARIADKGHPAGSEALERDVNTYGTAFQFLVMRRGAEYGRALGMAAGDRALGLVERRDDCETLVAGDIAAI
JGI10216J12902_1147902292	3300000956	Soil	MLDRVRLLMIDPKEVERYARAIAHIADKGHPAGSPELERDVNTYGTAFQFLVMRRGATYGRALGVVASDRALDLVKMRSEAEILVSGDIADMHERVCVAEEEAREREG*
Ga0063454_1001345591	3300004081	Soil	YARAIAHIVERGHPAGSVQLERAVNTYGTAFQLLVMRRGADYGRALGIAAGDRALTLLERPQEAEALLAGDIAAMHERVCLAEEEARERERETDA*
Ga0062593_1014758132	3300004114	Soil	VVANEIKVIVIDPNEIDRYARAIARIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPEYGRALGMAAGTRALSLVERQDNVETLIAGDIGEIHERVCLAEEEAQAREQDQDSA*
Ga0063455_1004189212	3300004153	Soil	VANEIKVIVIDPNEIDRYARAIARIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPEYGRALGMAAGNRALSLVERQDDVETLIAGDIGEIHERVCLAEEEAQAREQDQDSA*
Ga0063356_1001477223	3300004463	Arabidopsis Thaliana Rhizosphere	VSHETRIFLVDPKEIDRYARAIARIADKGHPAGSEALERDVNTYGTAFQFLVMRRGAEYGRALGMAAGDRALGLVERRDDCETLVAGDIAAIHERVCVAEEEARAKEQEAEE*
Ga0062591_1024382071	3300004643	Soil	KEIDRYARAIARIADKGHPAGSIELVRAVNTYGTAFQFLVMRRGPAYGRALGMAAGDRALSLVARRDHVETLVAGDIGEIHERVCLAEEEAQARERDQDTA*
Ga0070683_1002381982	3300005329	Corn Rhizosphere	MAQEARVFVIDPDEIDRYARAIVRIADKRHPTESVELTRAINMYGTAFQFLVMRRGAEYGRALAMAAGDRALTMLDQRPDAEALVTGALAEIHERVCRDEEDAQQQQPDREC*
Ga0070679_1006759343	3300005530	Corn Rhizosphere	PDEIDRYARAIVRIADKRHPTESVELTRAINMYGTAFQFLVMRRGAEYGRALAMAAGDRALTMLDQRPDAEALVTGALAEIHERVCRDEEDAQQQQPDREC*
Ga0058697_101185951	3300005562	Agave	VANEIKVIVIDPNEIDRYARAIARIADKGHPAGSIELVRAVNTYGTAFQLLVMRRGPAYGRALGIAAGDRALSLVARRDHVETLVAGDIGEIHERVCLAEEEAQARERDQDSL*
Ga0075434_1021215171	3300006871	Populus Rhizosphere	MAQEARVFVIDPDEIDRYARAIVRIADKRHPTESVELTRAVNMYGTAFQFLVMRRGAEYGRALAMAAGDRALTMLDQRPDAAALVAGALAEIHERV
Ga0079217_101277871	3300006876	Agricultural Soil	VANEIRVIVIDPNEIDRYARAIARIADKGHPAGSIELVRAGNTYGTAFQFLVMRRGPAYGRALGMAAGDRALSLVAQREHVETLVAGDIGEIHERVCLAEEEAQAREQDQDTA*
Ga0079216_102530753	3300006918	Agricultural Soil	VANEIRVIVIDPNEIDRYARAIARIADKGHPAGSVELVRAGNTYGTAFQFLVMRRGPTYGRALGMAAGDRALSLVAQREQVETLVAGDIGEIHERVCLAEEEAQAREQDQDTA*
Ga0079216_107448421	3300006918	Agricultural Soil	VANQIQVIVIDPKEIDRYARAIARIADKGHPAGSAELVRAVNTYGTAFQFLVMRRGPAYGRALGMAAGDRALSLVARRDHVETLVAGDIGEIHERVCLAEEEAQARERDEDSA*
Ga0105044_102951732	3300007521	Freshwater	MEHATQVFVIDPQEVDRFARAIARIVERGHAAGSPELERAVNTYGVAFQFLVMRRGAEYGRALGFAAGDLALTLVASPNDAEPLVTGDFAGIHERVCVAEEEARARNDEDAQARDEEREA
Ga0105679_102017543	3300007790	Soil	VANEIKVIVIDPKEIDRYARAIVRIADKRHPAGSVGLVRAVNTYGTAFQFLVMRRGPAYGRALGMAAGNHALSLVARRDDVETLIAGDIGEIHERVCLAEEEAQAREQDQDSA*
Ga0105679_102830372	3300007790	Soil	VANEIKVMIIDPKEIDRYARAIVRIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPAYGRALGMAAGDRALSLVEQRGDVETLIAGDIGEIHERVCLAEEEAQAREQDQDSA*
Ga0111539_125610121	3300009094	Populus Rhizosphere	VANEIKVIVIDPNEIDRYARAIARIADKGHPAGSVALVRAVNTYGTAFQFLVMRRGPEYGRALGMAAGNRALSLVERQDDVETLIAGDIGEIHERVCLAEEEAQAREQDQDSA*
Ga0126307_102228572	3300009789	Serpentine Soil	VANEIKVIVIDPNEIDRYARAIVRIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPEYGRALGMAAGNRALSLVARRDDLETLIAGDIGEIHERVCLAEEEAQAREQDQDTA*
Ga0126307_103691553	3300009789	Serpentine Soil	VANEIQVIVIDPNEIDRYARAIARIADKGHPAGSIELVRAVNTYGTAFQLLVMRRGPAYGRALGMAAGDRALSLVARRDHAETLVAGDIGEIHERVCLAEEEAREREQDSA*
Ga0126307_104819112	3300009789	Serpentine Soil	VANEIRVIVIDPNEIDRYARAIARIADKGHPAGSVELVRAVNTYGTAFQFLVMRRGPDYGRALGMAAGDRALSLVARRDAAETLVAGDIGEIHERVCLAEEEAQARERDQDSA*
Ga0126313_100763082	3300009840	Serpentine Soil	VANEIQVIVIDPNEIDRYARAIARIADKGHPAGSIELVRAVNTYGTAFQLLVMRRGPAYGRALGMAAGDRALTLVARRDHAETLVAGDIGEIHERVCLAEEEAREREQDSA*
Ga0126313_101076752	3300009840	Serpentine Soil	VANEIRVIVIDPNEIDRYARAIARIADKGHPAGSAELVRAVNTYGTAFQFLVMRRGPEYGRALGMAAGDRALSLVSRRDDVETLVAGDIGEIHERVCLAEEEARERDQEQDSA*
Ga0126313_102449952	3300009840	Serpentine Soil	VANEIKVIVIDPNEIDRYARAIARIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPEYGRALGMAAGNHALSLVPRRDDVETLIAGDIGEIHERVCLAEEEAQAREQDQDTA*
Ga0126313_103636453	3300009840	Serpentine Soil	VIVIDPNEIDRYARAIARIADKGHPAGSAELVRAVNTYGTAFQFLVMRRGPEYGRALGMAAGDRALSLVARRDDVETLVAGDIGEIHERVCLAEEEARERDQEQDSA*
Ga0126313_103868542	3300009840	Serpentine Soil	VANEIRVIVIDPNEIDRYARAIARIADKGHPAGSIELVRAVNTYGTAFQFLVMRRGPDYGRALGMAAGDRALSLVARRDDAETLVAGDIGEIHERVCLAEEEAQARERDQDSA*
Ga0126313_105187892	3300009840	Serpentine Soil	VANEIRVIVIDPNEIDRYARAIARIADKGHPAGSVELVRAVNTYGTAFQFLVMRRGPDYGRALGMAAGDRALSLVARREAAETLVAGDIGEIHERVCLAEEEAQARERDQDSA*
Ga0126313_105342702	3300009840	Serpentine Soil	VANEIKVIVIDPNEIDRYARAIARIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPDYGRALGMAAGNRALSLVARRDDVETLIAGDIGEIHERVCLAEEEAQAREQDQDTA*
Ga0126305_100356542	3300010036	Serpentine Soil	VANEIRVIVIDPNEIDRYARAIARIADKGHPAGSAELVRAVNTYGTAFQFLVMRRGPEYGRALGMAAGDRALSLVARRDDVETLVAGDIGEIHERVCLAEEEARERDQEQDSA*
Ga0126305_100938992	3300010036	Serpentine Soil	VANEIKVIVIDPNEIDRYARAIVRIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPEYGRALGMAAGNRALSLVARRDDVETLIAGDIGEIHERVCLAEEEAQAREQDQDTA*
Ga0126305_106124492	3300010036	Serpentine Soil	VSNEPRVFLIDPDEIDRYARAIARIADKGHPAGSTELERAVNTYGTAFQFLVMRRGPEYGRALGMAAGSRALSLVERRDHVEVLVSGDIGDIHERVCVAEEEALAREQDERQEADG*
Ga0126305_110028121	3300010036	Serpentine Soil	VANEIQVIVIDPNEIDRYARAIARIADKGHPVGSIELVRAVNTYGTAFQLLVMRRGPAYGRALGMAAGDRALTLVARRDHAETLVAGDIGEIHERVCLAEEEAREREQDSA*
Ga0126315_103892963	3300010038	Serpentine Soil	ELVRAVNTYGTAFQFLVMRRGPEYGRALGMAAGDRALSLVARRDDVETLVAGDIGEIHERVCLAEEEARERDQEQDSA*
Ga0126315_104608881	3300010038	Serpentine Soil	IDPNEIDRYARAIARIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPEYGRALGMAAGNRALSLVERQDDVETLIAGDIGEIHERVCLAEEEAQAREQDQDSA*
Ga0126315_109056211	3300010038	Serpentine Soil	VANEIKVIVIDPNEIDRYARAIARIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPDYGRALGMAAGNRALSLVARRDDVETLIAGDIGEIHERVCLAEEEA
Ga0126309_108639072	3300010039	Serpentine Soil	VANEIKVIVIDPNEIDRYARAIARIADKGHPAGSIELVRAVNTYGTAFQFLVMRRGPAYGRALGMAAGDRALSLVARRDHVETLVAGDIGEIHERVCLAEEEAQARERDQDSA*
Ga0126309_108880762	3300010039	Serpentine Soil	VANEIRVIVIDPNEIDRYARAIARIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPDYGRALGMAAGDRALSLVARRDDVETLIAGDIGEIHERVCLAEEEAQAREQDQDTA*
Ga0126309_109325061	3300010039	Serpentine Soil	EIQVIVIDPNEIDRYARAIARIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPAYGRALGMAAGNRALSLVERQDDVETLIAGDIGEIHERVCLAEEEAQAREQDQDTA*
Ga0126309_112785591	3300010039	Serpentine Soil	VANEIRVIVIDPNEIDRYARAIARIADKGHPAGSAELVRAVNTYGTAFQFLVMRRGPEYGRALGMAAGDRALSLVARRDDVETLVAGDIGEIH
Ga0126308_100500562	3300010040	Serpentine Soil	VANEIRVIVIDPNEIDRYARAIARIADKGHPAGSAELVRAVNTYGTAFQFLVMRRGPEYGRALGMAAGDRALSLVSRRDDVETLVAGDIGEIHERVCLAEEEAREQDLDTD*
Ga0126308_100519964	3300010040	Serpentine Soil	VANEIKVIVIDPNEIDRYARAIARIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPDYGRALGMAAGNRALSLVARQDDVETLIAGDIGEIHERVCLAEEEAQAREQDQDTA*
Ga0126308_110481841	3300010040	Serpentine Soil	VANEIQIIVIDPNELDRYARAIARIADKGHPAGSIELVRAVNTYGTAFQLLVMRRGPTYGRALGIAAGDRALTLVARRDHAETLVAGDIGEIHERVCLAEEEAREREQDSA*
Ga0126308_112604681	3300010040	Serpentine Soil	EASKDRAVANEIQVIVIDPNEIDRYARAIARIADKGHPAGSVELVRAVNTYGTAFQFLVMRRGPAYGRALGMAAGDRALSLVARRDHVETLVAGDIGEIHERVCLAEEEAQARERDEDSA
Ga0126312_100493012	3300010041	Serpentine Soil	VANEIRVIVIDPNEIDRYARAIARIADKGHPAGSAELVRAVNTYGTAFQFLVMRRGPEYGRALGMAAGDRALSLVARRGDVETLVAGDIGEIHERVCLAEEEARERDQEQDSA*
Ga0126312_110433641	3300010041	Serpentine Soil	VANEIKVIVIDPNEIDRYARAIARIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPEYGRALGMAAGNRALSLVARRDDVETLIAGDIGEIHERVCLAEEEAQAREQDQDTA*
Ga0126314_100961502	3300010042	Serpentine Soil	VANEIRVIVIDPNEIDRYARAIARIADKGHPAGSVELVRAVNTYGTAFQFLVMRRGPDYGRALGMAAGDRALSLVARRDAAETLVAGDIGEIHERVCLAEEEAQARE
Ga0126314_104350592	3300010042	Serpentine Soil	VANEIKVIVIDPNEIDRYARAIVRIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPEYGRALGMAAGNRALSLVARRDDVETLIAGDIGEIHERVCLAEEEAQAREQDQDTI*
Ga0126314_105326492	3300010042	Serpentine Soil	VKGKVVANEIKVIVIDPNEIDRYARAIARIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPEYGRALGMAAGNRALSLVERQDDVETLIAGDIGEIHERVCLAEEEAQAREQDQDSA*
Ga0126314_106043421	3300010042	Serpentine Soil	GSVGLVRAVNTYGTAFQFLVMRRGPAYGRALGMAAGNRALSLVARRDDVETLIAGDIGEIHERVCLAEEEAQAREQDQDTA*
Ga0126314_106256092	3300010042	Serpentine Soil	VANEIKVIVIDPNEIDRYARAIARIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPDYGRALGMAAGDRALSLVARRDDVETLIAGDIGEIHERVCLAEEEAQAREQDQDTA*
Ga0126310_101642902	3300010044	Serpentine Soil	VANEITVIVIDPNEIDRYARAIARIADKGHPAGSVELVRAVNTYGTAFQFLVMRRGPAYGRALGMAAGDRALSLVARREHVETLVAGDIGEIHERVCLAEEEAQAREQDQDSA*
Ga0126310_102386892	3300010044	Serpentine Soil	VANEIQVIVIDPNEIDRYARAIARIADKGHPAGSIELVRAVNTYGTAFQLLVMRRGPAYGRALGMAAGDRALTLVARRDHAATLVAGDIGEIHERVCLAEEEAREREQDSA*
Ga0126310_108407411	3300010044	Serpentine Soil	VSNEPRVFLIDPDEIDRYARAIARIADKGHPAGSTELERAVNTYGTAFQFLVMRRGPEYGRALGMAAGSRAMSLVARRDHVELLVSGDIGEIHERVCIAEEEALAREQDDRQAAEG*
Ga0126310_113298121	3300010044	Serpentine Soil	VANEIQVIVIDPNELDRYARAIARIADKGHPAGSIELVRAVNTYGTAFQLLVMRRGPTYGRALGIAAGDRALTLVARRDHAETLVAGDIGEIHERVCVAEEEAREREQDSA*
Ga0126311_110511191	3300010045	Serpentine Soil	VANEIQVIVIDPNELDRYARAIARIADKGHPAGSVELVRAVNTYGTAFQLLVMRRGPTYGRALGIAAGDRALTLVARRDHAETLVAGDIGEIHERVCAAEEEAREREQDSA*
Ga0126311_113598632	3300010045	Serpentine Soil	VKGKVVANEIKVIVIDPNEIDRYARAIARIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPAYGRALGMAAGNRALSLVARRDDVETLIAGDIGEIHERVCLA
Ga0126306_100606632	3300010166	Serpentine Soil	VANEIQVIVIDPKEIDRYARAIARIADKGHPAGSVELVRAVNTYGTAFQFLVMRRGPAYGRALGMAAGDRALSLVARRDHVETLVAGDIGEIHERVCLAEEEAQARERDEDSA*
Ga0126306_110074142	3300010166	Serpentine Soil	VANEFKVIVIDPNEIDRYARAIARIADKGHPAGSVELVRAVNTYGTAFQFLVMRRGPTYGRALGMAAGDRALSLVAQREHVETLVAGDIGEIHERVCLAEEEAQAREQDQDTA*
Ga0136631_103763551	3300012043	Polar Desert Sand	VAHETRIFLVDPKEIDRYARAIARIADKGHPAGSDALVRAVNTYGTAFQFLVMRRGAEYGRALGMAAGDLALSIVERRDDAETLVSGDIANIHDRVCTAEEEALAREQEEDS*
Ga0150985_1056852514	3300012212	Avena Fatua Rhizosphere	MEVVMNDRVRLFVVDPQEVDRYARAIAHIVERGHPAGSVQLERAVNTYGTAFQLLVMRRGADYGRALGIAAGDRALTLVERPQEAEALLAGDIAAMHERVCLAEEEARERERETDA*
Ga0150985_1144573633	3300012212	Avena Fatua Rhizosphere	VMSDRVRLFVVDPQEVDRYARAIAHIVARGHAAGSVELERAVNTYGTAFQLLVMRRGADYGRALGLAAGDRALSLVERRQEAEALLSGDIAAMHERVCLAEEEAREREREAGA*
Ga0150985_1204230842	3300012212	Avena Fatua Rhizosphere	VPNEPRVFLIDPDEIDRYARAIARIADKGHPAGSTELERAVNTYGTAFQFLVMRRGPEYGRALGMAAGSRAMSLVARRDHVELLVSGDIGEIHERVCVAEEEALAREQDDRQAAEG*
Ga0150985_1215348703	3300012212	Avena Fatua Rhizosphere	MEVLMNDRVRLFAVDPKEVDRYARAIAHIVERGHPAGSVELERAVNTYGTAFQLLVMRRGADYGRALGIAAGDRALTLLERPQDAEALLSGDIAAMHERVCLAEEEAREREREAGT*
Ga0150984_1080063281	3300012469	Avena Fatua Rhizosphere	VANEIQVIVIDPKEIDRYARAIARIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPAYGRALGMAAGDRALSLVARRDDAETLIAGDIGEIHERVCLAEEEAQAREEDQDTA*
Ga0150984_1092077251	3300012469	Avena Fatua Rhizosphere	LTWGASDRKLGDKRLEVVMSDRVRLFVVDPQEVDRYARAIAHIVERGHPAGSVALERAVNTYGTAFQLLVMRRGADYGRALGIAAGDRALTLVERRHEAEALLSGDIAEMHERVCLAEEEARERERESDT*
Ga0150984_1174605041	3300012469	Avena Fatua Rhizosphere	IARIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPEYGRALGMAAGNRALSLVERQDDVETLIAGDIGEIHERVCLAEEEAQAREQDQDSA*
Ga0136612_100048698	3300012680	Polar Desert Sand	MEHATRIFVIDPNEVDRYARAIARIVERGHAAGSPELERAVNTYGTAFQFLVMRRGAEYGRALGFAAGDLALTLVASPDDAETLVSGDIAGIHERVCVAEEEARARDDENARARDEERET
Ga0136612_103461441	3300012680	Polar Desert Sand	VANETRIFVVDSHEIDRYARAIARIADKGHPVGSTALERAVNTYGTAFQFLVMRRGAEYGRALGMAAGDRALSMVERRHEAETLVAGEIADIQERVCVAEEEALAREQEPEPE*
Ga0136611_106471411	3300012682	Polar Desert Sand	MAGLRDRHGAEDGIVTQETRVFLVDPKEIDRHARAIARIADKGHPAGSDALTRAVNTYGTAFQFLVMRRGAEYGRALGMAAGDLALALVARPDDAANLVSGDIAAIHERVC
Ga0157376_111435252	3300014969	Miscanthus Rhizosphere	GHPAGSVALERAVNTYGTAFQLLVMRRGADYGRALGLAAGDRALSLVEKRQEAEALLSGDIAAMHERVCLAEEEAREREREAERRARCWWPGAMRSSAHAG*
Ga0180121_104316171	3300017695	Polar Desert Sand	NEVDRYARAIARIAERGHAAGSPELERAVNTYGTAFQFLVMRRGAEYGRALAFAAGDLALTFVERPNDAQMLVAGDIANIHERVCVAEEEARARDEAEARARDEEREP
Ga0183260_101323954	3300017787	Polar Desert Sand	PKEIDRYARAIARIADKGHPAGSDALVRAVNTYGTAFQFLVMRRGAEYGRALGMAAGDLALSIVERRDDAETLVSGDIANIHDRVCTAEEEALAREQEEDS
Ga0136617_100399345	3300017789	Polar Desert Sand	VAHETRIFLVDPKEIDRYARAIARIADKGHPAGSDALVRAVNTYGTAFQFLVMRRGAEYGRALGMAAGDLALSIVERRDDAETLVSGDIANIHDRVCTAEEEALAREQEEDS
Ga0136617_114702571	3300017789	Polar Desert Sand	DPNEVDRYARAIARIAERGHAAGSPELERAVNTYGTAFQFLVMRRGAEYGRALAFAAGDLALTFVERPNDAQMLVAGDIANIHERVCVAEEEARARDEAEARARDEEREP
Ga0190266_112475761	3300017965	Soil	MNDRVRLFAVDPKEVDRYARAIAHIVERGHSAGSVELERAVNTYGTAFQLLVMRRGADYGRALGIAAGDRALTLLEQPQDAEALLSGDIAAMHERVCLAEEEAREREREAGA
Ga0190272_112992072	3300018429	Soil	VSNEPRIFVVDPDEIDRYARAIARIADKGHPAGSTELVRAVNTYGTAFQFLVMRRGAEYGRALGMAAGNRALALCEARERAETLVSGEIGDIHEQVCVAEEEAVAREQGENETKEADG
Ga0190269_101389283	3300018465	Soil	VANEIKVIVIDPKEIDRYARAIARIADKGHPAGSVELVRAVNTYGTAFQFLVMRRGPAYGRALGMAAGDQALSLVARRDDVETLVAGDIGEIHERVCLAEEEARERDQDTA
Ga0190269_113449792	3300018465	Soil	VANEIQVIVIDPNEIDRYARAIARIADKGHPAGSIELVRAVNTYGTAFQLLVMRRGPTYGRALGIAAGDRALTLVARRDHAQTLVAGDIGEIHERVCLAEEEAQAREQDQDTA
Ga0190269_120172481	3300018465	Soil	VALVGYARAIARIADKGHPAGSVELVRAVNTYGTAFQFLVMRRGPAYGRALGMAAGDRALSLVARRDHVETLVAGDIGEIHERV
Ga0190268_117205801	3300018466	Soil	NEPRVFLIDPEEIDRYARAIARIADKGHPAGSTELERAVNTYGTAFQFLVMRRGPEYGRALGMAAGSRALSLVAQRQHVEVLVSGDIGDIHERVCVAEEEALEREQDERQEADG
Ga0190274_121509601	3300018476	Soil	KVIVIDPKEIDRYARAIARIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPEYGRALGMAAGNRALSLVARRDDVETLIAGDIGEIHERVCLAEEEAQAREQDQDTA
Ga0190274_129051741	3300018476	Soil	RTVANEIQVIVIDPKEIDRYARAIARIADKGHPAGSVELVRAVNTYGTAFQFLVMRRGPAYGRALGMAAGDRALSLVARRDHVETLVAGDIGEIHERVCLAEEEAQARERDEDSA
Ga0193598_10174335	3300018910	Soil	KVIVIDPNEIDRYARAIARIADKGHPAGSIGLVRAVNTYGTAFQFLVMRRGPEYGRALGMAAGDRALSLVARREHVETLVAGDIGEIHERVCLAEEEAQAREQDQDKDTA
Ga0193598_11221721	3300018910	Soil	VANEIKVFVIDPNEIDRYARAIARIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPDYGRALGMAAGNRALSLVARRDDVETLIAGDIGEIHERVCLAEEEAQAREQDQDSA
Ga0190273_115499752	3300018920	Soil	ARAIVRIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPDYGRALGMAAGDRALSLVARRDDVETLIAGDIGEIHERVCLAEEEAQAREQDQDTA
Ga0190264_106094942	3300019377	Soil	VANEIKVFVIDPKEIDRYARAIVRIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPDYGRALGMAAGNRALSLVARRDDVETLIAGDIGEIHERVCLAEEEAQAREQDQDTA
Ga0190267_107393992	3300019767	Soil	VANEIRVIVIDPNEIDRYARAIARIADKGHPAGSVELVRAVNTYGTAFQFLVMRRGPDYGRALGMAAGDRALSLVARRDAAETLVAGDIGEIHERVCLAE
Ga0206356_119045142	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MAQEARVFVIDPDEIDRYARAIVRIADKRHPTESVELTRAVNMYGTAFQFLVMRRGAEYGRALAMAAGDRALTMLDQRPDAAALVTGALAEIHERVCRDEEDAQQQQPDREC
Ga0196962_101094452	3300024430	Soil	VANEIKVFVIDPNEIDRYARAIVRIADKGHPAGSVGLVRAVNTYGTAFQFLVMRRGPAYGRALGMAAGNHALSLVEQRIDVETLIAGDIGEIHERVCLAEEEAQAREQDQDSA
Ga0207652_117585352	3300025921	Corn Rhizosphere	MAQEARVFVIDPDEIDRYARAIVRIADKRHPTESVELTRAINMYGTAFQFLVMRRGAEYGRALAMAAGDRALTMLDQRPDAEALVTGALAEIHERVCRDEEDAQQQQPDREC
Ga0307276_100243161	3300028705	Soil	EIDRYARAIARIADKGHPAGSIGLVRAVNTYGTAFQFLVMRRGPAYGRALGMAAGDRALSLVARRDDAETLIAGDIGEIHERVCLAEEEAQAREEDQDTA
Ga0308201_100425002	3300031091	Soil	VANEIQVIVIDPKEIDRYARAIARIADKGHPAGSIGLVRAVNTYGTAFQFLVMRRGPAYGRALGMAAGDRALSLVARRDDAETLIAGDIGEIHERVCLAEEEAQAREEDQDTA
Ga0307408_1009048272	3300031548	Rhizosphere	VANEIKVIVIDPNEIDRYARAIARIADKGHPAGSIELVRAVNTYGTAFQLLVMRRGPTYGRALGMAAGDRALSLVARRDHAETLVAGDIGEIHERVCLAEEEARERDQDSA
Ga0307408_1023723881	3300031548	Rhizosphere	GSEALERDVNTYGTAFQFLVMRRGAEYGRALGMAAGDRAMALVARRDTCESLVAGDIGAIHERVCVAEEEAQAREQDQDQDSV
Ga0307405_112243892	3300031731	Rhizosphere	VANEIKVIVIDPNEIDRYARAIARIADKGHPAGSIELVRAVNTYGTAFQLLVMRRGPAYGRALGMAAGDRALTLVARRDHAETLVAGDIGEIHERVCLAEEEAREREQDSA
Ga0307413_112753611	3300031824	Rhizosphere	KVFVIDPNEIDRYARAIVRIADRGHPAGSVGLVRAVNTYGTAFQFLVMRRGPAYGRALGMAAGDRALSLVEQRGDVETLIARDIGEIHERVCLAEEEAQAREQDQNKDSA
Ga0307407_109464111	3300031903	Rhizosphere	GHPAGSIELVRAVNTYGTAFQLLVMRRGPTYGRALGMAAGDRALSLVARRDHAETLVAGDIGEIHERVCLAEEEARERDQDSA
Ga0307407_111176731	3300031903	Rhizosphere	VANEIKVIVIDPNEIDRYARAIARIADKGHPAGSIELVRAVNTYGTAFQLLVMRRGPAYGRALGMAAGDRALTLVARRDHAETLVAGDIGEIHERVCLAEEEAREREQD
Ga0308175_1001354133	3300031938	Soil	VANEIKVIVIDPNEIDRYARAIARIADKGHPAGSVELVRAVNTYGTAFQLLVMRRGPAYGRALGMAAGDLALSLVARRDHAEILVAGDIGEIHERVCLAEEEARERDQDSA
Ga0308175_1022763982	3300031938	Soil	ADCGVTDSSRRPRALGHEAIEEESMAQEARVFVIDPDEIDRYARAIVRIADKRHPTESVELTRAINMYGTAFQFLVMRRGAEYGRALAMAAGDRALTMLDQRPDAEALVTGALAEIHERVCRDEEDAQQQQPDREC
Ga0214473_112328022	3300031949	Soil	VADETRVFVIDPNEVDRYARAIARIVERGHAAGSAELERAVNTYGTAFQFLVMRRGPQYGRALGMVAGDQALSLVERRLDAEALVAGDIGAIHERVCLAEEEAQAREQETGG
Ga0307409_1003798802	3300031995	Rhizosphere	MQGASKDKVVTNEIKVIVIDPKEIDRYARAIARIADKQHPAGSVELVRAVNTYGTAFQFLVMRRGPTYGRALGMAAGDRALSLVAQREYVETLVAGDIGEIHERVCVAEEEAQAREQDQDQDSI
Ga0307409_1005255963	3300031995	Rhizosphere	IDPNEIDRYARAIARIADKGHPAGSVELVRAVNTYGTAFQFLVMRRGPDYGRALGMAAGDRALSLVARRDAAETLVAGDIGEIHERVCLAEEEAQARERDQDSA
Ga0307409_1026378701	3300031995	Rhizosphere	VANEIRVIVIDPNEIDRYARAIARIADKGHPAGSIELVRAVNTYGTAFQLLVMRRGPAYGRALGMAAGDLALTLVARRDHAETLVAGDIGEIHERVCL
Ga0307414_113395271	3300032004	Rhizosphere	AGSIELVRAVNTYGTAFQFLVMRRGPDYGRALGMAAGDRALSLVARRDAAETLVAGDIGEIHERVCLAEEEAQARERDQDSA
Ga0307414_122526142	3300032004	Rhizosphere	VELVRAVNTYGTAFQFLVMRRGPAYGRALGMAAGDRALSLVARREYVETLVAGDIGEIHERVCVAEEEAQAREQDQDQDSV
Ga0307411_101396203	3300032005	Rhizosphere	MPGACKREARKDRIVANEIKVIVIDPNEIDRYARAIARIADKGHPAGSIELVRAVNTYGTAFQLLVMRRGPTYGRALGMAAGDRALSLVARRDHAETLVAGDIGEIHERVCLAEEEARERDQDSA
Ga0307415_1000703695	3300032126	Rhizosphere	YARAIARIADKGHPAGSIELVRAVNTYGTAFQLLVMRRGPAYGRALGMAAGDRALTLVARRDHAETLVAGDIGEIHERVCLAEEEAREREQDSA
Ga0268251_100568672	3300032159	Agave	VANEIKVIVIDPNEIDRYARAIARIADKGHPAGSIELVRAVNTYGTAFQLLVMRRGPAYGRALGMAAGDRALTLVARRDHAETLVAGDIGEIHERVCLAEEEARERDQDSA
Ga0247830_109746421	3300033551	Soil	VSHETRIFLVDPKEIDRYARAIARIADKGHPAGSEALERDVNTYGTAFQFLVMRRGAEYGRALGMAAGDRALGLVERRDDCETLVAGDIAAIHERVCVAEEEARAKEQEAEE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086714

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences