Metagenome / Metatranscriptome Family F086604

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F086604
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	61 residues
Representative Sequence	MKYFYGVVHAVVNCEDCDWETSSYKNAQAIAKIHAKKYGHKVTGELGIGFGYNGR
Number of Associated Samples	58
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	85.45 %
% of genes near scaffold ends (potentially truncated)	10.00 %
% of genes from short scaffolds (< 2000 bps)	63.64 %
Associated GOLD sequencing projects	52
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (70.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (37.273 % of family members)
Environment Ontology (ENVO)	Unclassified (39.091 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (36.364 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 14.46% β-sheet: 32.53% Coil/Unstructured: 53.01%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.66
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.66
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF14791	DNA_pol_B_thumb	2.73
PF01507	PAPS_reduct	2.73
PF07505	DUF5131	2.73
PF00145	DNA_methylase	1.82
PF01844	HNH	0.91
PF13365	Trypsin_2	0.91
PF14528	LAGLIDADG_3	0.91
PF10686	YAcAr	0.91
PF05063	MT-A70	0.91
PF09339	HTH_IclR	0.91
PF09681	Phage_rep_org_N	0.91
PF10127	RlaP	0.91
PF00589	Phage_integrase	0.91
PF01909	NTP_transf_2	0.91
PF05406	WGR	0.91
PF00535	Glycos_transf_2	0.91
PF04343	DUF488	0.91
PF01520	Amidase_3	0.91
PF01555	N6_N4_Mtase	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG4422	Bacteriophage protein gp37	Mobilome: prophages, transposons [X]	2.73
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	1.82
COG4725	N6-adenosine-specific RNA methylase IME4	Translation, ribosomal structure and biogenesis [J]	1.82
COG0860	N-acetylmuramoyl-L-alanine amidase	Cell wall/membrane/envelope biogenesis [M]	0.91
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.91
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.91
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.91
COG3189	Uncharacterized conserved protein YeaO, DUF488 family	Function unknown [S]	0.91
COG3831	WGR domain, predicted DNA-binding domain in MolR	Transcription [K]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.00 %
All Organisms	root	All Organisms	30.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.00 %
cellular organisms	root	All Organisms → cellular organisms	20.91 %
Viruses	superkingdom	All Organisms → Viruses	9.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.00 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	10.91 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	10.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.09 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.73 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	2.73 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.73 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.82 %
Candidatus Thermoplasmatota	phylum	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota	0.91 %
Asgard group	clade	All Organisms → cellular organisms → Archaea → Asgard group	0.91 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.91 %
environmental samples	no rank	All Organisms → cellular organisms → Archaea → environmental samples	0.91 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.09 %
Candidatus Bathyarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	2.73 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.82 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.82 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.82 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.91 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.91 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.91 %
Candidatus Thorarchaeota	phylum	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota	0.91 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.91 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.91 %
Thermoplasmata	class	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.09 %
unclassified Candidatus Bathyarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota	2.73 %
Patescibacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group	1.82 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.82 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.82 %
Candidatus Thorarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	0.91 %
Thermoplasmatales	order	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales	0.91 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.91 %
Vibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales	0.91 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.91 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.91 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.09 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2.73 %
Microgenomates group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group	1.82 %
Desulfarculales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfarculales	1.82 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.82 %
unclassified Thermoplasmatales	no rank	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales	0.91 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.91 %
Vibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	0.91 %
Candidatus Thorarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	0.91 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.91 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.91 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.09 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2.73 %
Desulfarculaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfarculales → Desulfarculaceae	1.82 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.82 %
unclassified Microgenomates group	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → unclassified Microgenomates group	0.91 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.91 %
Thermoplasmatales archaeon	species	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon	0.91 %
Candidatus Woesebacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria	0.91 %
Vibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	0.91 %
Candidatus Thorarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	0.91 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.91 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.91 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.09 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2.73 %
Desulfarculus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfarculales → Desulfarculaceae → Desulfarculus	1.82 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.82 %
Microgenomates group bacterium RBG_16_45_19	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → unclassified Microgenomates group → Microgenomates group bacterium RBG_16_45_19	0.91 %
Rubinisphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Rubinisphaera	0.91 %
Candidatus Woesebacteria bacterium GW2011_GWB1_39_12	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium GW2011_GWB1_39_12	0.91 %
Thermoplasmatales archaeon	species	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon	0.91 %
Vibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	0.91 %
Candidatus Thorarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	0.91 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.91 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.91 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.09 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2.73 %
unclassified Desulfarculus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfarculales → Desulfarculaceae → Desulfarculus → unclassified Desulfarculus	1.82 %
unclassified Rubinisphaera	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Rubinisphaera → unclassified Rubinisphaera	0.91 %
Streptomyces prunicolor	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces prunicolor	0.91 %
Microgenomates group bacterium RBG_16_45_19	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → unclassified Microgenomates group → Microgenomates group bacterium RBG_16_45_19	0.91 %
Candidatus Woesebacteria bacterium GW2011_GWB1_39_12	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium GW2011_GWB1_39_12	0.91 %
Thermoplasmatales archaeon	species	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon	0.91 %
Vibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	0.91 %
Candidatus Thorarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	0.91 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.91 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.91 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.09 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2.73 %
Desulfarculus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfarculales → Desulfarculaceae → Desulfarculus → unclassified Desulfarculus → Desulfarculus sp.	1.82 %
Rubinisphaera sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Rubinisphaera → unclassified Rubinisphaera → Rubinisphaera sp.	0.91 %
Streptomyces prunicolor	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces prunicolor	0.91 %
Microgenomates group bacterium RBG_16_45_19	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → unclassified Microgenomates group → Microgenomates group bacterium RBG_16_45_19	0.91 %
Candidatus Woesebacteria bacterium GW2011_GWB1_39_12	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium GW2011_GWB1_39_12	0.91 %
Thermoplasmatales archaeon	species	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon	0.91 %
Vibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	0.91 %
Candidatus Thorarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	0.91 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.91 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.91 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.91 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001855\|JGI2160J19893_10121119	Not Available	507	Open in IMG/M
3300003462\|SC02A_1208072	Not Available	521	Open in IMG/M
3300003852\|Ga0031655_10000684	Not Available	21076	Open in IMG/M
3300005555\|Ga0066692_10690578	Not Available	634	Open in IMG/M
3300005782\|Ga0079367_1006276	All Organisms → cellular organisms → Archaea	6363	Open in IMG/M
3300005782\|Ga0079367_1124719	Not Available	1031	Open in IMG/M
3300005820\|Ga0078747_132972	Not Available	1172	Open in IMG/M
3300007871\|Ga0111032_1021384	Not Available	1482	Open in IMG/M
3300007871\|Ga0111032_1032952	Not Available	1038	Open in IMG/M
3300008516\|Ga0111033_1014853	Not Available	1167	Open in IMG/M
3300008516\|Ga0111033_1143126	Not Available	1035	Open in IMG/M
3300008516\|Ga0111033_1197038	Not Available	1548	Open in IMG/M
3300008517\|Ga0111034_1056712	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1492	Open in IMG/M
3300008517\|Ga0111034_1133966	Not Available	1424	Open in IMG/M
3300009034\|Ga0115863_1006156	All Organisms → cellular organisms → Archaea	18043	Open in IMG/M
3300009034\|Ga0115863_1091089	Not Available	3818	Open in IMG/M
3300009034\|Ga0115863_1145328	All Organisms → Viruses → Predicted Viral	2907	Open in IMG/M
3300009034\|Ga0115863_1272720	Not Available	2003	Open in IMG/M
3300009034\|Ga0115863_1383715	All Organisms → Viruses → Predicted Viral	1633	Open in IMG/M
3300009034\|Ga0115863_1385882	Not Available	1627	Open in IMG/M
3300009034\|Ga0115863_1410458	Not Available	1567	Open in IMG/M
3300009034\|Ga0115863_1458955	All Organisms → Viruses → Predicted Viral	1465	Open in IMG/M
3300009034\|Ga0115863_1708495	Not Available	1128	Open in IMG/M
3300009034\|Ga0115863_1758703	Not Available	1082	Open in IMG/M
3300009090\|Ga0099827_10043813	Not Available	3326	Open in IMG/M
3300009150\|Ga0114921_10004794	All Organisms → cellular organisms → Archaea	6799	Open in IMG/M
3300009150\|Ga0114921_11369904	Not Available	530	Open in IMG/M
3300009150\|Ga0114921_11476567	Not Available	509	Open in IMG/M
3300009285\|Ga0103680_10191372	Not Available	1092	Open in IMG/M
3300009488\|Ga0114925_10136902	Not Available	1584	Open in IMG/M
3300009488\|Ga0114925_10139650	Not Available	1569	Open in IMG/M
3300009488\|Ga0114925_10286490	Not Available	1115	Open in IMG/M
3300009488\|Ga0114925_10313362	Not Available	1067	Open in IMG/M
3300009488\|Ga0114925_10434975	Not Available	911	Open in IMG/M
3300009488\|Ga0114925_10473891	Not Available	874	Open in IMG/M
3300009488\|Ga0114925_10799402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	678	Open in IMG/M
3300009488\|Ga0114925_10832818	Not Available	664	Open in IMG/M
3300009529\|Ga0114919_10084864	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Rubinisphaera → unclassified Rubinisphaera → Rubinisphaera sp.	2311	Open in IMG/M
3300009529\|Ga0114919_10169775	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfarculales → Desulfarculaceae → Desulfarculus → unclassified Desulfarculus → Desulfarculus sp.	1563	Open in IMG/M
3300009529\|Ga0114919_10462206	Not Available	878	Open in IMG/M
3300009529\|Ga0114919_10616201	Not Available	743	Open in IMG/M
3300009529\|Ga0114919_10693206	Not Available	694	Open in IMG/M
3300009529\|Ga0114919_11205638	Not Available	505	Open in IMG/M
3300009691\|Ga0114944_1246679	Not Available	723	Open in IMG/M
3300009788\|Ga0114923_10831101	Not Available	703	Open in IMG/M
3300010391\|Ga0136847_10143464	Not Available	1515	Open in IMG/M
3300011118\|Ga0114922_11123155	Not Available	636	Open in IMG/M
3300012931\|Ga0153915_13068551	Not Available	543	Open in IMG/M
3300012964\|Ga0153916_10026423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	4988	Open in IMG/M
(restricted) 3300013127\|Ga0172365_10200253	Not Available	1222	Open in IMG/M
(restricted) 3300013127\|Ga0172365_10399568	All Organisms → cellular organisms → Archaea	804	Open in IMG/M
(restricted) 3300013127\|Ga0172365_10404269	Not Available	798	Open in IMG/M
(restricted) 3300013127\|Ga0172365_10869595	Not Available	505	Open in IMG/M
(restricted) 3300013128\|Ga0172366_10640734	Not Available	627	Open in IMG/M
(restricted) 3300013129\|Ga0172364_10123478	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1785	Open in IMG/M
(restricted) 3300013129\|Ga0172364_10427403	Not Available	847	Open in IMG/M
(restricted) 3300013133\|Ga0172362_10252080	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon	1264	Open in IMG/M
3300014656\|Ga0180007_10051787	Not Available	2936	Open in IMG/M
3300017991\|Ga0180434_10000551	Not Available	55042	Open in IMG/M
3300021357\|Ga0213870_1002961	Not Available	7070	Open in IMG/M
3300023311\|Ga0256681_12155780	Not Available	2257	Open in IMG/M
3300024263\|Ga0209978_10021626	All Organisms → Viruses → Predicted Viral	3153	Open in IMG/M
3300024432\|Ga0209977_10000002	Not Available	106549	Open in IMG/M
3300024432\|Ga0209977_10022673	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	3002	Open in IMG/M
3300024433\|Ga0209986_10059544	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfarculales → Desulfarculaceae → Desulfarculus → unclassified Desulfarculus → Desulfarculus sp.	2216	Open in IMG/M
3300024433\|Ga0209986_10519446	Not Available	521	Open in IMG/M
3300027742\|Ga0209121_10055649	Not Available	1980	Open in IMG/M
3300027811\|Ga0256868_10170214	Not Available	939	Open in IMG/M
(restricted) 3300027881\|Ga0255055_10015799	Not Available	4451	Open in IMG/M
3300027882\|Ga0209590_10146897	Not Available	1458	Open in IMG/M
3300027888\|Ga0209635_10335067	Not Available	1193	Open in IMG/M
3300027917\|Ga0209536_100096107	All Organisms → cellular organisms → Bacteria	3777	Open in IMG/M
3300029288\|Ga0265297_10039714	Not Available	4347	Open in IMG/M
3300031539\|Ga0307380_11012565	Not Available	662	Open in IMG/M
3300031566\|Ga0307378_11163448	Not Available	614	Open in IMG/M
(restricted) 3300031593\|Ga0315307_1002833	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → unclassified Microgenomates group → Microgenomates group bacterium RBG_16_45_19	7728	Open in IMG/M
3300031673\|Ga0307377_11097252	Not Available	528	Open in IMG/M
3300031707\|Ga0315291_10314863	Not Available	1527	Open in IMG/M
3300031707\|Ga0315291_10734160	Not Available	871	Open in IMG/M
3300031707\|Ga0315291_11492834	Not Available	533	Open in IMG/M
3300031772\|Ga0315288_10004612	Not Available	17559	Open in IMG/M
3300031772\|Ga0315288_10079469	Not Available	3807	Open in IMG/M
3300031772\|Ga0315288_10136589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces prunicolor	2748	Open in IMG/M
3300031772\|Ga0315288_11038810	Not Available	725	Open in IMG/M
3300031834\|Ga0315290_10043658	All Organisms → Viruses → Predicted Viral	3617	Open in IMG/M
3300031862\|Ga0315280_10007838	Not Available	14194	Open in IMG/M
3300031862\|Ga0315280_10067235	Not Available	2836	Open in IMG/M
3300031862\|Ga0315280_10091022	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Woesebacteria → Candidatus Woesebacteria bacterium GW2011_GWB1_39_12	2218	Open in IMG/M
3300031862\|Ga0315280_10277577	Not Available	860	Open in IMG/M
(restricted) 3300031877\|Ga0315314_1007007	Not Available	7821	Open in IMG/M
3300031952\|Ga0315294_10713287	Not Available	878	Open in IMG/M
3300031999\|Ga0315274_10280185	All Organisms → Viruses → Predicted Viral	2005	Open in IMG/M
3300031999\|Ga0315274_10595895	Not Available	1222	Open in IMG/M
3300032020\|Ga0315296_10000859	All Organisms → cellular organisms → Archaea	27271	Open in IMG/M
3300032020\|Ga0315296_10002224	Not Available	16630	Open in IMG/M
3300032020\|Ga0315296_10073526	Not Available	2241	Open in IMG/M
3300032020\|Ga0315296_10076537	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2186	Open in IMG/M
3300032020\|Ga0315296_10151049	All Organisms → Viruses → Predicted Viral	1431	Open in IMG/M
3300032046\|Ga0315289_10043386	Not Available	5698	Open in IMG/M
3300032046\|Ga0315289_10518129	Not Available	1139	Open in IMG/M
3300032053\|Ga0315284_10309440	All Organisms → Viruses → Predicted Viral	1986	Open in IMG/M
3300032053\|Ga0315284_10924771	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	992	Open in IMG/M
3300032069\|Ga0315282_10002262	All Organisms → cellular organisms → Archaea	35681	Open in IMG/M
3300032070\|Ga0315279_10109715	All Organisms → Viruses → Predicted Viral	2344	Open in IMG/M
3300032070\|Ga0315279_10130646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2083	Open in IMG/M
3300032070\|Ga0315279_10182676	All Organisms → Viruses → Predicted Viral	1656	Open in IMG/M
3300032070\|Ga0315279_10611259	Not Available	683	Open in IMG/M
3300032516\|Ga0315273_10121293	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon	3579	Open in IMG/M
3300033513\|Ga0316628_100640970	Not Available	1389	Open in IMG/M
3300033991\|Ga0334965_0191717	Not Available	828	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.09%
Engineered	Engineered	0.91%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	91.82%
Terrestrial	Environmental → Terrestrial	7.27%
Solid Waste	Engineered → Solid Waste	0.91%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	45.45%
Freshwater	Environmental → Aquatic → Freshwater	44.55%
Soil	Environmental → Terrestrial → Soil	7.27%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.91%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.91%
Landfill	Engineered → Solid Waste → Landfill	0.91%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	40.00%
Oceanic	Environmental → Aquatic → Marine → Oceanic	24.55%
Coastal	Environmental → Aquatic → Marine → Coastal	9.09%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	9.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	3.64%
Clay	Environmental → Terrestrial → Soil → Clay	2.73%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.82%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.91%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	0.91%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.91%
Inlet	Environmental → Aquatic → Marine → Inlet	0.91%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.91%
Oil Seeps	Environmental → Aquatic → Marine → Oil Seeps	0.91%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.91%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	0.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	38.18%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	24.55%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	9.09%
Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment	9.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	2.73%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	2.73%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.82%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.91%
Chlorinated	Environmental → Aquatic → Freshwater → Drinking Water → Chlorinated	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Marine → Oil Seeps → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.91%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	0.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.91%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	37.27%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	21.82%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	9.09%
Sediment, Intertidal	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Sediment, Intertidal	9.09%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	2.73%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	2.73%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.82%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.82%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.91%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.91%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.91%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.91%
Groundwater	Environmental → Aquatic → Freshwater → Drinking Water → Chlorinated → Groundwater	0.91%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.91%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.91%
Marine Sediment	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment	0.91%
Marine	Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine	0.91%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.91%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Landfill Leachate	Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate	0.91%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001855	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12	Environmental	Open in IMG/M
3300003462	Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S13-SC02A	Environmental	Open in IMG/M
3300003852	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005782	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf, PM3	Environmental	Open in IMG/M
3300005820	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 75 cmbsf, PM2	Environmental	Open in IMG/M
3300007871	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 75 cmbsf. Combined Assembly of MM2PM2	Environmental	Open in IMG/M
3300008516	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf. Combined Assembly of MM3PM3	Environmental	Open in IMG/M
3300008517	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 175 cmbsf. Combined Assembly of Gp0128389 and Gp0131431 MM4PM4	Environmental	Open in IMG/M
3300009034	Intertidal mud flat sediment archaeal communities from Garolim Bay, Chungcheongnam-do, Korea	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009150	Deep subsurface microbial communities from South Atlantic Ocean to uncover new lineages of life (NeLLi) - Benguela_00093 metaG	Environmental	Open in IMG/M
3300009285	Microbial communities from groundwater in Rifle, Colorado, USA - 2A_0.1um	Environmental	Open in IMG/M
3300009488	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG	Environmental	Open in IMG/M
3300009529	Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG	Environmental	Open in IMG/M
3300009691	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP2	Environmental	Open in IMG/M
3300009788	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00157 metaG	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300011118	Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaG	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300013127 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cm	Environmental	Open in IMG/M
3300013128 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 69cm	Environmental	Open in IMG/M
3300013129 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 10cm	Environmental	Open in IMG/M
3300013133 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment s1_kivu2a2	Environmental	Open in IMG/M
3300014656	Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PC_MetaG	Environmental	Open in IMG/M
3300017991	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_2 metaG	Environmental	Open in IMG/M
3300021357	Freshwater microbial communities from subterranean cave lake in Wind Cave National Park, South Dakota, United States - WICALVC2017	Environmental	Open in IMG/M
3300023311	Combined Assembly of Gp0281739, Gp0281740, Gp0281741	Environmental	Open in IMG/M
3300024263	Deep subsurface microbial communities from South Atlantic Ocean to uncover new lineages of life (NeLLi) - Benguela_00093 metaG (SPAdes)	Environmental	Open in IMG/M
3300024432	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG (SPAdes)	Environmental	Open in IMG/M
3300024433	Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)	Environmental	Open in IMG/M
3300027742	Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 3 (SPAdes)	Environmental	Open in IMG/M
3300027811	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT92D227 HiSeq	Environmental	Open in IMG/M
3300027881 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_27	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027888	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-30_32 (SPAdes)	Environmental	Open in IMG/M
3300027917	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)	Environmental	Open in IMG/M
3300029288	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 137-91	Engineered	Open in IMG/M
3300031539	Soil microbial communities from Risofladan, Vaasa, Finland - UN-3	Environmental	Open in IMG/M
3300031566	Soil microbial communities from Risofladan, Vaasa, Finland - UN-1	Environmental	Open in IMG/M
3300031593 (restricted)	Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP2	Environmental	Open in IMG/M
3300031673	Soil microbial communities from Risofladan, Vaasa, Finland - TR-3	Environmental	Open in IMG/M
3300031707	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20	Environmental	Open in IMG/M
3300031772	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031862	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40	Environmental	Open in IMG/M
3300031877 (restricted)	Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP9	Environmental	Open in IMG/M
3300031952	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40	Environmental	Open in IMG/M
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental	Open in IMG/M
3300032020	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_18	Environmental	Open in IMG/M
3300032046	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40	Environmental	Open in IMG/M
3300032053	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16	Environmental	Open in IMG/M
3300032069	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20	Environmental	Open in IMG/M
3300032070	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_20	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033991	Sediment microbial communities from Lake Vrana, Zadar, Croatia - 4 bact	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI2160J19893_101211191	3300001855	Marine Sediment	MNYAYGPVHAYVKCKDCGWESSSYKNAQAIAKIHAQKHRHRVEGELGIAFVYDGRKK*
SC02A_12080721	3300003462	Marine Sediment	MKYYYGVVHAIVKCEDCPWETESYKNAQATAKIHAKSHGHKVSGELGIGFGYDGRVKSD*
Ga0031655_100006845	3300003852	Freshwater Lake Sediment	MKYGYGVVHAIMRCQDCGWETYSYKNAQAIAKIHAKKYKHRVEGELGISLFYDGKEDRGK
Ga0066692_106905783	3300005555	Soil	MKYSYGVVHAIVECLDCDWRTNSYKNAQAIAKIHAQKHMHHVSGELGIAFHYYGGES*
Ga0079367_10062768	3300005782	Marine Sediment	MKYSYGVVHGIAECEDCEWRTESYKNAQAIASIHAKKHGHRVTGELGITFSYNGREEVEAE*
Ga0079367_11247194	3300005782	Marine Sediment	MKYSYGVIHAYVRCLDCGWETYSYKNAQAIAKIHAEKHRHRVEGELGIAFSYNGRDGEGK
Ga0078747_1329723	3300005820	Marine Sediment	MKYSYGVIHAYVKCDDCGWETESYKNAQAIAKIHAQKHGHKVYGELGIAFTYNGREK*
Ga0111032_10213843	3300007871	Marine Sediment	MFSVWRRMMKYSYGVIHAYVKCDDCGWETESYKNAQAIAKIHAQKHGHKVYGELGIAFTYNGREK*
Ga0111032_10329521	3300007871	Marine Sediment	MKYSYGVIHAYVRCLDCGWETYSYKNAQAIAKIHAEKHRHRVEGELGIAFSYNGRDGE
Ga0111033_10148533	3300008516	Marine Sediment	MKYSYGVIAAIVECEDCDWTTESYKNAQAIAKIHAARYGHRVVGELGIGFSYNGREE*
Ga0111033_11431262	3300008516	Marine Sediment	MKYSYGVIHAYVRCLDCGWETESYKNAQAIAKIHAEKHGHRVEGELGIAFSYNGRDEVKG
Ga0111033_11970383	3300008516	Marine Sediment	LKYSYGVIHAIVECEDCDWTTNSYKNAQAIAKIHAKRYGHRVLGELGISFSYNGRKEAFKD*
Ga0111034_10567121	3300008517	Marine Sediment	MKYSYGVIHAIIKCEDCGWTASSYKNAQATAAIHAKKHRHKVKGELGIAIMYDGREDAE*
Ga0111034_11339666	3300008517	Marine Sediment	MKYSYGVIHAYVRCLDCEWETESYKNAQAIAKIHAEKYKHRVEGELGIAFTYNGREG*
Ga0115863_100615613	3300009034	Sediment, Intertidal	MSYNYGVIHAIAKCEDCDWEAKSYKNAQATAKIHAKKYSHKVSGELGIGFGYNYRGKKKK
Ga0115863_10910898	3300009034	Sediment, Intertidal	MSYSYGVIHAVVECEDCDWTTGSYKNAQAIAKIHAKRYGHKVSGELGIGFSYDFRSEGAQKKIRDKTK*
Ga0115863_11453284	3300009034	Sediment, Intertidal	MSYSYGVVHAVVQCEDCDWHTESYKNAQAIAKIHARKYGHKVSGELGISFYYDYR*
Ga0115863_12727203	3300009034	Sediment, Intertidal	MSYHYGVIHAVVECEDCDWETQSYKNAQAIAKIHAKTYGHKVSGELGISFGYNYRGNKRVREVKGAQ*
Ga0115863_13837153	3300009034	Sediment, Intertidal	MSYDYGVIHAVVKCEDCEWATESYKNAQAIAKIHAKKYGHKVSGELGIYFMYDFREKILDIK*
Ga0115863_13858825	3300009034	Sediment, Intertidal	VSGGRIIKYGYGVFHAIVGCQDCGWTTSSYKNAQAIAKIHAKKYGHRVSGELGISFFYDGRSEEKGG*
Ga0115863_14104585	3300009034	Sediment, Intertidal	MSYTYGVVHAVVECEDCDWKTGSYKNAQAIAKIHAKRYGHKVRGELGIGFSYDYRGKKK*
Ga0115863_14589551	3300009034	Sediment, Intertidal	MKYWYSVVGARVECEDCEWATESYKNAQAISKIHAKKYGHRVRGELDILFGYDAREE
Ga0115863_17084952	3300009034	Sediment, Intertidal	MSYTYGVIHAVVECEDCEWTTESYKNAQAIAKIHAKKYGHKVSGELGISFSYDFRSEGEQKKSGEGAWGGESTQ*
Ga0115863_17587034	3300009034	Sediment, Intertidal	MSYHYGVVHAIAKCEDCDWKAKSYKNAQATSKIHAKKYGHRVSGELGISFGYDYRTKKKQEKQQ*
Ga0099827_100438138	3300009090	Vadose Zone Soil	MKYSYGVVHAIVECYDCNWKTTSYKNAQAIAKIHAAKYHHHVSGELGIAFHYHGESS*
Ga0114921_1000479412	3300009150	Deep Subsurface	MSYHYGVIHAIVECEDCDWRTESYKNAQAIAKIHAKKYGHKVSGELCIAFGYDYRGKNNEV*
Ga0114921_113699042	3300009150	Deep Subsurface	MKYYYGVIHAIVKCDDCDWETSSYKNAQAIAKIHAKKYSHKVSGELGISFGYNGREEVGEEHLHGGEAEK*
Ga0114921_114765672	3300009150	Deep Subsurface	MSYHYGVIHATVECEDCDWKTESYKNAQAIAKKHAKKYGHKVSGELGIAFGYDYRGKKKPTTKKVGEEK*
Ga0103680_101913723	3300009285	Groundwater	LKYHYGVVHGLAWCNDCGWKTESYKNAQAIAKIHAKKRGHNVSGELGIAFSYIGREETK*
Ga0114925_101369025	3300009488	Deep Subsurface	MAVKKYAYGVIHGVVRCLDCEWETESYKNAQAIAKIHAEKHGHKVEGELGIAFMYDGR*
Ga0114925_101396503	3300009488	Deep Subsurface	MKYSYGVVHAVVECEDCDWTTESYKNAQAIASIHARKYKHRVTGELGIAFSYNGRVK*
Ga0114925_102864901	3300009488	Deep Subsurface	MAIKNYTYSPIHAIIKCLDCDWDTQSYKNAQAIAKIHAETHGHRVEGELGIVIMYDGRE*
Ga0114925_103133624	3300009488	Deep Subsurface	MKYSYGVVHAIVHCEDCEWKTYSYKNAQAIAKIHAQKHRHSVCGELGIAFSYNGRKETG*
Ga0114925_104349754	3300009488	Deep Subsurface	MAIKKYSYGAVHAIVECQDCDWKTESYKNAQAIAKLHAEKHRHKVRGELGISFMYDGRD*
Ga0114925_104738914	3300009488	Deep Subsurface	VQGGKMKYQYSVIHAIVECEDCDWKTYSYKNAQAIAKIHAQAHKHKVVGELGIAIMYDGRK*
Ga0114925_107994023	3300009488	Deep Subsurface	GNGDFRAKMKYSYAVIHAQVRCEDCEWTTESYKNAQAIASNHARRYGHRVVGELGVGFSYNGREG*
Ga0114925_108328182	3300009488	Deep Subsurface	MTIKKYTYGVIHAIIKCLDCDWETQSYKNAQAIAKVHAETHKHRVEGELGIAIMYDGRE*
Ga0114919_100848645	3300009529	Deep Subsurface	VKYSYGVIHAVVKCLDCDWETFSYKNAQAVAKIHAKTHGHRVEGELGIAIMYDGRR*
Ga0114919_101697754	3300009529	Deep Subsurface	MAIKKYSYGVIHGIVKCLDCDWETSSYKNAQAIGKIHADKHGHKVEGELGIAIMYDGRDEGR*
Ga0114919_104622061	3300009529	Deep Subsurface	SPCCGVETWMRYSYGVVHGVVRCLDCGWETNSYKNAQAIAKIHAKKHGHKVKGELGIAFMYDGREVHDE*
Ga0114919_106162013	3300009529	Deep Subsurface	MKYHYGVIHAVVKCLDCDWETFSYKNAQAIAKIHAETHGHRVEGELGIAIMYDGRR*
Ga0114919_106932062	3300009529	Deep Subsurface	MLTREVKMKYRYGVVHAIIKCLDCDWETFSYKNAQAISKIHAETHGHKVEGELGISIMYDGRKEG*
Ga0114919_112056382	3300009529	Deep Subsurface	VDRKSEARMGEMKYHYGVMHAYVRCLDCGWEAHSYKNAQAIAKIHAKKYGHRVEGELGIAFGYNGRESK*
Ga0114944_12466791	3300009691	Thermal Springs	MKYVYGVVHGIAKCSDCEWYTESYKNAQAIAKIHAQKYHHRVEGELGIAFGYDGRGE*
Ga0114923_108311012	3300009788	Deep Subsurface	MEKEYGVVHGIAECQDCDWGTQSYKNAQAIAARHAKAHGHKVTGELGIYFSYDGRKDTK*
Ga0136847_101434642	3300010391	Freshwater Sediment	MSTYTYGVVHAFVECETCGWTTHSYKNAQALAAQHARRHKHKVSGELGIAFSYG*
Ga0114922_111231552	3300011118	Deep Subsurface	MKYSYGVTHAIVRCKDCEWETYSYKNAQAIAKIHAKTHGHLVEGELGIAFDYDGRKEKSET*
Ga0153915_130685512	3300012931	Freshwater Wetlands	MKRFYGVVHAQVWCDDCAWKTASYKNAQAIAKIHAEKHGHKVHGELGIAF
Ga0153916_100264238	3300012964	Freshwater Wetlands	MSYTYGVVHAIVKCEDCDWGSESYKNAQALAAKHAKKYGHKVRGELGISFSYNYRSVQVK
(restricted) Ga0172365_102002532	3300013127	Sediment	MTYTYGVVHAIVHCLDCDWEAKSYKNAQATAAIHAKKHRHRVEGELGIAFSYDFRQKKKEEKAE*
(restricted) Ga0172365_103995682	3300013127	Sediment	VKYSYGVVHGLAECEDCGWTTDSYKNAQAIAKIHAQKYGHKVRGELGIAFSYDGRGEKPASGETKK*
(restricted) Ga0172365_104042691	3300013127	Sediment	MSYSYGVVHAVVHCLDCDWEAKSYKNAQATAAIHAKKHRHRVEGELG
(restricted) Ga0172365_108695951	3300013127	Sediment	MRYSYGVVHAIVECEDCGWHTESYKNAQALAKIHAKKYHHKVRGELGISFSYDGRTEKEE
(restricted) Ga0172366_106407342	3300013128	Sediment	MSYSYGVVHAVAHCLDCDWEAKSYKNAQATAAIHAKKHCHRVEGELGISFSYDFREKKEEK*
(restricted) Ga0172364_101234783	3300013129	Sediment	MSYSYGVVHAYVKCEDCDWETESYKNAQAIAKIHAKKYNHKVSGELGISFSYDFRLKEKET*
(restricted) Ga0172364_104274033	3300013129	Sediment	MSYSYGVVHAVVHCLDCDWEAKSYKNAQATAAIHAKKHRHRVEGELGIAFCYDFREKKEEKP*
(restricted) Ga0172362_102520802	3300013133	Sediment	VKYSYGVVHGLAECEDCGWTTDSYKNAQAIAKIHAQKYGHKVRGELGIAFSYDGRGEKPASEETKP*
Ga0180007_100517874	3300014656	Groundwater	MKYFYGVVHAVVNCEDCDWETSSYKNAQAIAKIHAKKYGHKVTGELGIGFGYNGR*
Ga0180434_1000055187	3300017991	Hypersaline Lake Sediment	MKYKYGVIHGHVRCIDCGWETYSYKNAQAIAKIHAKKYGHRVEGELGIAFSYYGEKEASD
Ga0213870_10029618	3300021357	Freshwater	MKHSYGVVHGTAYCEDCDWKTESYKNAQAIAKIHAKKYKHRTHGDLGIAFSYDGKKD
Ga0256681_121557805	3300023311	Freshwater	MKYGYGVIHAIMRCQDCGWETYSYKNAQAIAKIHAKKYKHRVEGELGISLFYDGKEDRGK
Ga0209978_100216268	3300024263	Deep Subsurface	MSYHYGVIHAIVECEDCDWRTESYKNAQAIAKIHAKKYGHKVSGELCIGFGYDYREKNNE
Ga0209977_10000002202	3300024432	Deep Subsurface	MKYSYAVIHAQVRCEDCEWTTESYKNAQAIASIHARRYGHRVIGELGIGFSYNGRGDGLE
Ga0209977_1002267310	3300024432	Deep Subsurface	MKYSYGVVHAIVECDDCEWKTFSYKNAQAIAKIHAQKYGHRVIGELGIGFSYNGRKDTPK
Ga0209986_100595445	3300024433	Deep Subsurface	MAIKKYSYGVIHGIVKCLDCDWETSSYKNAQAIGKIHADKHGHKVEGELGIAIMYDGRDEGR
Ga0209986_105194462	3300024433	Deep Subsurface	MKYSYGVIHGIVKCLDCDWETESYKNAQAISKIHAETHGHKVEGELGISIMYDGRKEG
Ga0209121_100556493	3300027742	Marine	MKHTYGVVGASVRCEDCEWKTDSYKNAQAISKIHAEKYGHRVIGELGVFFTYDGRKGA
Ga0256868_101702142	3300027811	Soil	MNYGYGVVHGVAKCQDCGWETYSYKNAQAISKKHAMKHGHKVEGELGIAFFYDGRAKEDE
(restricted) Ga0255055_1001579911	3300027881	Seawater	MSYEYGVTHAIVNCDDCDWKTQSYKNAQAIAKIHAKKYGHKVSGELAIYFNYDFRGKTK
Ga0209590_101468975	3300027882	Vadose Zone Soil	MKYSYGVVHAIVECYDCNWKTTSYKNAQAIAKIHAAKYHHHVSGELGIAFHYHGESS
Ga0209635_103350672	3300027888	Marine Sediment	MNYHYGVIHAIVWCEDCDWKTESYKNAQAIAKIHAKKYGHRVSGELGIAFGYDYRGRKKK
Ga0209536_1000961076	3300027917	Marine Sediment	MNYAYGPVHAYVKCKDCGWESSSYKNAQAIAKIHAQKHRHRVEGELGIAFVYDGRKK
Ga0265297_1003971412	3300029288	Landfill Leachate	VASYGYGVVHGIVRCLDCGWESESYKNAQANAKRHAKAHGHRVEGDLGISFFYDHRGEEKNARNEKEG
Ga0307380_110125652	3300031539	Soil	MKKEIGVVHALFECEDCGKMYESHKNAQALAAIHAKKYHHRVSGEVGISVLYDGRHE
Ga0307378_111634481	3300031566	Soil	SLLYDRRLLGRTGGTMKYAYGVVHAVVRCQDCEWETFSYKNAQAISKKHAEKYGHYVEGELGISFSYDGREANNE
(restricted) Ga0315307_10028339	3300031593	Sediment	MKYWYAVVHAIVECEDCDWRSESYKNAQAIAKNHAEKYGHRVHGELGVDFGYNGREVEA
Ga0307377_110972522	3300031673	Soil	MKYSYGVIHAYVRCEDCGWETESYKNAQAIAKIHAQKHGHQVSGELGIGFTYNGREGGANNE
Ga0315291_103148632	3300031707	Sediment	MRWRCEMSYTYAVVHGIATCEDCDWHTESYKNAQAIAKIHAKKYGHKVRGELGISFSYDFRLSKLCK
Ga0315291_107341602	3300031707	Sediment	MKRYYGVVHAVAECQDCDWKTWSYKNAQAIAAIHAQKHCHKVVGELGISFGYDGRKEAA
Ga0315291_114928342	3300031707	Sediment	MSYIYSVIHAFVKCEDCDWETGSYKNAQAIAKIHAKKYGHKVSGELGISIGYDYRSTELSLKEGT
Ga0315288_1000461211	3300031772	Sediment	VSYNYGVVHAIVKCDDCDWETFSYKNAQAIAKIHAKKHNHKVSGELGICFEYNYRVKENS
Ga0315288_100794697	3300031772	Sediment	VSHVYSVVHAIIECEDCGWTAKHYKNAQATAKIHAKRYGHRVSGDLGIYLVYDYRGVGEDEK
Ga0315288_101365892	3300031772	Sediment	VSYVYSVVHAIIACEDCGWTARHYKNAQATAKIHAKRYGHRVSGDLGIYLVYDYRDVGGESEEEGKR
Ga0315288_110388103	3300031772	Sediment	MSYSYGVVHATVKCEDCGWKTESYRNAQAIAKIHAKKYGHKVRGELGIAFDYDFRKVKPKNEIKK
Ga0315290_100436584	3300031834	Sediment	MSYVYSVIHAFVKCEDCDWETGSYKNAQAIAKIHAKKYGHKVSGELGISIGYDYRSTELSLKEGT
Ga0315280_100078388	3300031862	Sediment	MASYHYGVVDGRAECLDCGWSTQSYKNAQAIAKIHAKKRGHKVLGELGIAFGYDYHKE
Ga0315280_100672353	3300031862	Sediment	MTGTYFYGVVHAVVECEDCDWKTTSYKNAQALAKIHAKKYGHKVTGELGIAFEYDYRENKEV
Ga0315280_100910223	3300031862	Sediment	MSYSYGVVRGVAECDDCEWKTTSYKNAQAIAKIHAKKYGHKVRGELGILFYYNYRKEGA
Ga0315280_102775772	3300031862	Sediment	MKRSYGVVHGVAKCEDCDWKTESYKNAQAIAARHARKYGHKVQGDLGIYFEYDGRA
(restricted) Ga0315314_100700718	3300031877	Sediment	MSYWYRVVHTIIECEDCGWYSNSYKNAQALAKIHAKKYGHRVKGELGIDFGYDYRKKEKE
Ga0315294_107132873	3300031952	Sediment	GWGMKEMSYSYGVVHGVATCLDCGWHTASYKNAQAIAKIHAKKYGHAVVGELGISFSYDYRGEGGKTQK
Ga0315274_102801853	3300031999	Sediment	MKYHYSVVHAIVECEDCSWKTQSYKNAQAIAKIHAQKHGHRVHGELGIAFGYDGRKEATQ
Ga0315274_105958954	3300031999	Sediment	VKYSYGVIHAIVRCEDCDWKTTSYKNAQAIAKIHAKHYGHHVHGELGIGFSYDGRKEASP
Ga0315296_1000085949	3300032020	Sediment	MSYWYGVVHGTVECEDCDWKTESYKNAQAIAKIHAKTHGHRVRGELGITFGYDYREKKEEVKE
Ga0315296_1000222422	3300032020	Sediment	MKRSYGVVHGVAECEDCEWTTSSYKNCQAIAKIHAQKHGHRVRGELGIDFTYDGRA
Ga0315296_100735263	3300032020	Sediment	MSPKKWFAVIHAIVKCEDCDWEATSYKNAQATGKIHAKKHGHRVRGELAIDFGYDFRSEEKVVEISK
Ga0315296_100765377	3300032020	Sediment	MSYSYGVIAAIVFCNDCEWKTESYKNAQALAKIHAKRYGHRVSGELTIAFHYDHRQKIPKETRT
Ga0315296_101510492	3300032020	Sediment	MKYRYGVVHARVKCEDCEWTTESYKNAQAIAKIHAQRYHHKVHGELGISFMYDGRPEAKT
Ga0315289_100433868	3300032046	Sediment	MKYVYAVVHAIAECEDCGWKATNYKNAQATAKIHAKRYGHKVSGELGIAISYDYRGVVRLEKRGKPNDK
Ga0315289_105181293	3300032046	Sediment	MKYSYGVIHGVMRCADCGWETYSYKNAQAISKIHAAKYHHKVEGELGISLVYDGRNAAREGEKEEK
Ga0315284_103094406	3300032053	Sediment	MTYYYSVIAAQVECQDCSWKTESYKNAQAIAKIHAQKRGHKVRGELTIAFGYDYHGGERK
Ga0315284_109247712	3300032053	Sediment	VKYAFGVVSAYVECLDCPWKTESYKNAQAIAKIHAKTHGHKVRGELGIAFHYDGHAEK
Ga0315282_100022625	3300032069	Sediment	MSYSYGVVRGVAECDDCEWKTTSYKNAQAIAKIHAKKYGHKVRGELVILFYYDYRKEGA
Ga0315279_101097152	3300032070	Sediment	MKHEYGVVHGLAECKDCGWKTVSYKNAQAIAAIHAKKYHHKVVGELGISFEYDGHEAA
Ga0315279_101306462	3300032070	Sediment	MSYSYGVVRGVAECDDCEWKTTSYKNAQAIAKIHAKKYGHKVRGELVILFYYDYRKEGV
Ga0315279_101826762	3300032070	Sediment	MSYYYGVIHAIVHCEDCAWSTDSYKNAQAIAKIHAKRYGHKVRGELAIGFGYDYRDGAKQKREE
Ga0315279_106112592	3300032070	Sediment	MSYNYGVIAAIVFCNDCEWKTESYKNAQALAKIHAKRYGHRVSGELTISF
Ga0315273_101212933	3300032516	Sediment	MSYIYSVIHAFVKCEDCDWETGSYKNAQAIAKIHAKKYGHKVSGELGISIGYNYRSTESEIKVKDK
Ga0316628_1006409705	3300033513	Soil	MAKYSYGVTHGIVRCQDCGWENQSYKNAQATAKIHAKKYGHLVEGELGIAFSYDYREEAKCK
Ga0334965_0191717_162_341	3300033991	Sediment	MKYSYGVIHAYVRCLDCDWETESYKNAQAIAKIHAEKHGHRVKGELGIAFSHNGRKEQS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters