Metatranscriptome Family F086565

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Overview

Basic Information
Family ID	F086565
Family Type	Metatranscriptome
Number of Sequences	110
Average Sequence Length	71 residues
Representative Sequence	MLQEMVGVEADPKLQSLFQHRLDPLVSQAQVLVEQMVPAQVLLVAAAAESGLLGWAAGQGKPGS
Number of Associated Samples	59
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	98.18 %
% of genes near scaffold ends (potentially truncated)	7.27 %
% of genes from short scaffolds (< 2000 bps)	100.00 %
Associated GOLD sequencing projects	53
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (93.636 % of family members)
Environment Ontology (ENVO)	Unclassified (99.091 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (95.455 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96 1Ga0103951_103641223 2Ga0103951_103740403 3Ga0103951_105809063 4Ga0103951_107111181 5Ga0103951_107869472 6Ga0103951_108006091 7Ga0103951_108087461 8Ga0103951_108087481 9Ga0103951_108253571 10Ga0103711_100545651 11Ga0103502_103499762 12Ga0103878_10403961 13Ga0193486_1043272 14Ga0193339_10130232 15Ga0193064_10290442 16Ga0193355_10153371 17Ga0193355_10308091 18Ga0192914_10212221 19Ga0193467_10276082 20Ga0193467_10414232 21Ga0193431_10105351 22Ga0193445_10486822 23Ga0193445_10486891 24Ga0192906_10295161 25Ga0193137_10222831 26Ga0192917_10366372 27Ga0193195_10184942 28Ga0193195_10186891 29Ga0193195_10349941 30Ga0193195_10426012 31Ga0193195_10469821 32Ga0193195_10499321 33Ga0193209_10576672 34Ga0193209_10587222 35Ga0193425_10225353 36Ga0192938_10828481 37Ga0192902_10706391 38Ga0193212_10728931 39Ga0193478_10684082 40Ga0193407_10244301 41Ga0192839_10762232 42Ga0193197_10606981 43Ga0193197_10731011 44Ga0193117_10346862 45Ga0193117_10628532 46Ga0193397_100058872 47Ga0193183_10249282 48Ga0193500_10880382 49Ga0193214_10450931 50Ga0193199_11211161 51Ga0193553_10703302 52Ga0193553_10703321 53Ga0193268_11054352 54Ga0193268_11059692 55Ga0193268_11065311 56Ga0193096_101631652 57Ga0192921_102392631 58Ga0193265_101401742 59Ga0193265_101401752 60Ga0193266_100913432 61Ga0193266_100913512 62Ga0193528_103148181 63Ga0193087_101053602 64Ga0193487_102821821 65Ga0193487_102828451 66Ga0193487_102849972 67Ga0193487_102850031 68Ga0193487_102850071 69Ga0192916_100685552 70Ga0193444_101885762 71Ga0193444_101885801 72Ga0193444_101885871 73Ga0193514_103038061 74Ga0193514_103061942 75Ga0193514_103061951 76Ga0193514_103126512 77Ga0193514_103126542 78Ga0193154_101436221 79Ga0193154_101547391 80Ga0193154_103149331 81Ga0193154_103156582 82Ga0193196_104035231 83Ga0193196_104802252 84Ga0192926_103856131 85Ga0193299_103815322 86Ga0193094_101332703 87Ga0193094_101778712 88Ga0193555_102521621 89Ga0193555_102704651 90Ga0193555_102978291 91Ga0192857_100692722 92Ga0193189_101312222 93Ga0193208_105171592 94Ga0193208_105231912 95Ga0193208_105353232 96Ga0193515_10684761 97Ga0193515_10689912 98Ga0193515_10695261 99Ga0193112_11106891 100Ga0193112_11270891 101Ga0193112_11318501 102Ga0193112_11394761 103Ga0193112_11480271 104Ga0193112_11542511 105Ga0193453_11960541 106Ga0073985_100127031 107Ga0073985_100153962 108Ga0073986_120099201 109Ga0138346_101472342 110Ga0073954_115367092
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96 1Ga0103951_103641223 2Ga0103951_103740403 3Ga0103951_105809063 4Ga0103951_107111181 5Ga0103951_107869472 6Ga0103951_108006091 7Ga0193486_1043272 8Ga0193355_10153371 9Ga0193195_10469821 10Ga0192938_10828481 11Ga0193478_10684082 12Ga0193117_10628532 13Ga0193553_10703302 14Ga0193266_100913432 15Ga0193487_102850071 16Ga0193154_103156582 17Ga0192857_100692722 18Ga0193112_11270891 19Ga0193112_11480271 20Ga0073985_100153962
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64 1Ga0193445_10486822 2Ga0103951_103641223 3Ga0103951_103740403 4Ga0103951_105809063 5Ga0103951_107111181 6Ga0103951_107869472 7Ga0103951_108006091 8Ga0103951_108087461 9Ga0103951_108087481 10Ga0103951_108253571 11Ga0193486_1043272 12Ga0193355_10308091 13Ga0193467_10276082 14Ga0193467_10414232 15Ga0192906_10295161 16Ga0192917_10366372 17Ga0193195_10186891 18Ga0193195_10469821 19Ga0193195_10499321 20Ga0193425_10225353 21Ga0192938_10828481 22Ga0192902_10706391 23Ga0192839_10762232 24Ga0193197_10606981 25Ga0193117_10346862 26Ga0193117_10628532 27Ga0193397_100058872 28Ga0193553_10703302 29Ga0193096_101631652 30Ga0192921_102392631 31Ga0193265_101401742 32Ga0193265_101401752 33Ga0193266_100913432 34Ga0193266_100913512 35Ga0193528_103148181 36Ga0193087_101053602 37Ga0193487_102850031 38Ga0192916_100685552 39Ga0193444_101885801 40Ga0193514_103038061 41Ga0193514_103061942 42Ga0193514_103061951 43Ga0193514_103126512 44Ga0193154_101436221 45Ga0193154_103149331 46Ga0193154_103156582 47Ga0193555_102521621 48Ga0193555_102978291 49Ga0192857_100692722 50Ga0193208_105353232 51Ga0193515_10684761 52Ga0193112_11270891 53Ga0193112_11318501 54Ga0193112_11394761 55Ga0193112_11542511 56Ga0138346_101472342 57Ga0073954_115367092
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.17% β-sheet: 0.00% Coil/Unstructured: 47.83%
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Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Predicted 3D Structure

Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Phylogeny

NCBI Taxonomy

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300008832\|Ga0103951_10364122	Not Available	761	Open in IMG/M
3300008832\|Ga0103951_10374040	Not Available	752	Open in IMG/M
3300008832\|Ga0103951_10580906	Not Available	609	Open in IMG/M
3300008832\|Ga0103951_10711118	Not Available	548	Open in IMG/M
3300008832\|Ga0103951_10786947	Not Available	518	Open in IMG/M
3300008832\|Ga0103951_10800609	Not Available	513	Open in IMG/M
3300008832\|Ga0103951_10808746	Not Available	510	Open in IMG/M
3300008832\|Ga0103951_10808748	Not Available	510	Open in IMG/M
3300008832\|Ga0103951_10825357	Not Available	504	Open in IMG/M
3300008928\|Ga0103711_10054565	Not Available	579	Open in IMG/M

Showing 1 to 10 of 110 entries

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Environmental Properties

Associated Habitat Types

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Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	6.36%
Unclassified	Environmental → Aquatic → Marine → Unclassified	93.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	93.64%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	6.36%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	93.64%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	4.55%
Ocean Water	Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water	0.91%
Surface Ocean Water	Environmental → Aquatic → Marine → Oceanic → Unclassified → Surface Ocean Water	0.91%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300008832	Eukaryotic communities of water collected during the Tara Oceans expedition - TARA_A200000150	Environmental	Open in IMG/M
3300008928	Eukaryotic communities from seawater of the North Pacific Subtropical Gyre - HoeDylan_E3	Environmental	Open in IMG/M
3300008998	Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_A100000548	Environmental	Open in IMG/M
3300009274	Eukaryotic communities of water from the North Atlantic ocean - ACM10	Environmental	Open in IMG/M
3300018534	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_136 - TARA_N000002965 (ERX1789412-ERR1719179)	Environmental	Open in IMG/M
3300018605	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_110 - TARA_N000001754 (ERX1782444-ERR1712177)	Environmental	Open in IMG/M
3300018616	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_138 - TARA_N000003003 (ERX1782367-ERR1711877)	Environmental	Open in IMG/M
3300018628	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_111 - TARA_N000001820 (ERX1782125-ERR1711885)	Environmental	Open in IMG/M
3300018637	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_072 - TARA_N000000837 (ERX1782121-ERR1712056)	Environmental	Open in IMG/M
3300018638	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002175 (ERX1789495-ERR1719505)	Environmental	Open in IMG/M

Showing 1 to 10 of 59 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0103951_103641223	3300008832	Marine	MLQEMVGAEVDPKMQSLFQHRLDPLVSQSQVLVELMVPAQVLLVVVVAAESGFLGWAADQGKTGN*
Ga0103951_103740403	3300008832	Marine	MLLEMLGAQADPKLFQKRLDPPVFQSQVLAEQKVVPAQVLLVAAAEAGSGLLGWAAGQGKPESQSMERSVLG*
Ga0103951_105809063	3300008832	Marine	MLLEMVGVEADPKLQSLFQHRLDPPVSQTQVLEEQKVVRAQVLLVVVAAESSLLGWAADQGKLGSQSMERSVLGL*
Ga0103951_107111181	3300008832	Marine	MLLEMVGVEVDPKLQILFQHRRDPLVFQVQVLVEQMVPAQVLLVAAAAGSALRRWAAGQEKPGSQSMGRAVLGLLQWLVEWKRAH*
Ga0103951_107869472	3300008832	Marine	MFQEMVGVEVDPKLQSLFPNRLYPPVYQSQVLVGQKVVPAQVLLVVAAAEYGWAAGQEKLGS*
Ga0103951_108006091	3300008832	Marine	LLLEVLGAQADPKLQSLFQKRLDPPVFQSQVLEGQKVVPAQVLLVVVAAEYGLLGWAAGQEKPES*
Ga0103951_108087461	3300008832	Marine	MVGAQADPKLQSLFQKRLDPPVYQSQVLVGQMVRAQVLLVVVAAESGLLGWAADQEKPGS
Ga0103951_108087481	3300008832	Marine	MLQEMVGAQADPKLQSLFRHSRDPLVSQAQVLVGQKVVPAQVLLVVVAAESGLQGWAAGQGKPGS*
Ga0103951_108253571	3300008832	Marine	MLLEMLGVEVDPKKQSLLRHRLDPPVSQSQVLVGQKVVPAQVLLVVAAAEYGWAAGQEKLGS*
Ga0103711_100545651	3300008928	Ocean Water	MLLEMLGVEADPKLQSLFQHRLDPLVSQAQVLVEQMVPAQVLLVAAAGSGLLGWVAGQEKPGSQSMERSVLG*
Ga0103502_103499762	3300008998	Marine	MLQEMVGAEADPKLQSLFQHRRDPLVSQSQVLVGQMVPAQVSLVVAGSGLLRWAAGQGKPGSQSMGRAVLGLLQWLVEWKRAH*
Ga0103878_10403961	3300009274	Surface Ocean Water	MLLEMLGVEADPKLQSLFQHRLDPPVYQSQVLVGQKVVPAQVLLVVVAAESGSGLLGWAAGQEKPGS*
Ga0193486_1043272	3300018534	Marine	MLQEMLGVEVDAKQQSLLRHRCDPRVSQSQVLVGQKVVPAQVWLVAVAAESGLLGWAAGQEKPGS
Ga0193339_10130232	3300018605	Marine	MLLEMLGFEADPKLLSLFQKRLDPPVSQAQVLVEQMVPAQVLLVAAAAESGLLGWAAGQGKPGS
Ga0193064_10290442	3300018616	Marine	MLQEMVGAEVDPKLLSLFQHRLDPPVSQSQVLVEQMVVPAQVLLAAAAESGLLGWAADQEKPGSQSMERSVLG
Ga0193355_10153371	3300018628	Marine	MLLEMVGVEVDPKLLSLFQNRLDPPVSQAQVLVGQKVVPAHVWPVAADAESGLLGWAVGQEK
Ga0193355_10308091	3300018628	Marine	MLQEMLGVEADPKLQSLFQNRPDPPVSQAQVLLEQMVPAQVWPVAAAAGSALLGWAVGQEKPGSQSMGRAVLGLLQWLVEWKRAH
Ga0192914_10212221	3300018637	Marine	MHLEMVGVEVDPKQQSLLRHRLDPLVSQSQVLVGQMVPAQVLLVVVAADYGLLGWAAGQEKPGS
Ga0193467_10276082	3300018638	Marine	MLLEMVGVEVDPKLLSLFQNRLDPPVSQAQVLVGQKVVPAHVWPVAADAESGLLGWAVGQEKPGSQSMERSVLG
Ga0193467_10414232	3300018638	Marine	MLQEMIGVEADPKLLSLFQNRFDPLVSQTQVLAEQKVVPAHVWPVAAAAESGLLGWAADQ
Ga0193431_10105351	3300018643	Marine	MIGAEADPKLQSLSQHRLDPPVSQAQVLEEQKVVPAQVLLVVAAAESGLLGWAADQEKPGSQSMERSVLG
Ga0193445_10486822	3300018648	Marine	MLQEMVGVEADPKLQSLFQHRLDPLVSQAQVLVEQMVPAQVLLVAAAAESGLLGWAAGQGKPGS
Ga0193445_10486891	3300018648	Marine	MLQEMVGAEVDPKLQSLFQHRLDPLVSQAQVLVEQMVPAQVLLVAAAAESGLLGWAAGQGKPGS
Ga0192906_10295161	3300018658	Marine	MLQEIVGVEADPKQQSLLRHRRDPLVSQSQVLVGQKVVPVQVLLVVAAEAGSGLLGWAVGQEKPGS
Ga0193137_10222831	3300018676	Marine	MLLEMVGAEADPKLLSLFQKRLDPPVSQTQVLEEQKVVPAQVLLVVVAAESGLLGWAAGQGKPGSQSMGRAVLDLLQWLVEWRRAH
Ga0192917_10366372	3300018690	Marine	MLQEMLGVEADPKLLSLFQHRLDPPVSQSQVLVEQRVVPAQVLLVVVASESGLLGWVAGQEKPGS
Ga0193195_10184942	3300018699	Marine	MLQEMIGAEADPKLQSLFQDRLDPPVSQSQVLEEQKVVPAHVWPVASAAESGDLGWAADQEKPGSQSKERAVLG
Ga0193195_10186891	3300018699	Marine	MLLEMLGVEADPKLLSLFQKRLDPPVSQAQVLVEQRVVPAQVLLVAAAAGSGLLRWAAGQGKPGSQSTERSVLGSLRWLEWKRAH
Ga0193195_10349941	3300018699	Marine	MLQEMLGVEADPKLQSSFQHRLDPLVSQSQVLVGQKVVPAQVLLVAAAAAGSGLLGWAAGQGKPGSQSMGRAVLG
Ga0193195_10426012	3300018699	Marine	MLQEMIGAEADPKLQSLFQDRLDPPVSQSQVLEEQKVVPAHVWPLAADAESGLLGWAADQEKPGSQSMERSVLG
Ga0193195_10469821	3300018699	Marine	MLQEMVGAEADPKLLSLFQHRRDPLVSQSQVLEEQRVFPAQVLLVVAAEAGSCLLG
Ga0193195_10499321	3300018699	Marine	MLQEMLGVEADPKLQSSFQHRLDPLVSQSQVLVGQKVVPAQVLLVVAAVESALLGWAAGRGKPGS
Ga0193209_10576672	3300018709	Marine	MLQEMLGVEVDAKQQSLLRHRCDPRVSQSQVLVGQKVVPAQVWLVAVAAESGLLGWAADQGKPGS
Ga0193209_10587222	3300018709	Marine	MLQEMVGVEADPKLQSLFQHRLDPLVSQAQVLVEQMVPAQVLLVAAAGSGLLGWAAGQGKPGS
Ga0193425_10225353	3300018743	Marine	MLQEMIGAEADPKLQSLSQHRLDPPVSQAQVLEEQKVVPAQVLLVVAAAESGLLGWAADQEKPGSQSMERSVLG
Ga0192938_10828481	3300018751	Marine	MLLEMVGAEDDPKLQSLFQHRRDPLVSQSQVLVGQMVPAQVLLVVVAAESGSGHLGWVADQEKPGSQSMERSVLGLLQWLV
Ga0192902_10706391	3300018752	Marine	MLQEMIGAEVDPKEQCLLRHRRDPLVSQSQVLEEQMVVPAQVLLVVAAAGSGLLGW
Ga0193212_10728931	3300018767	Marine	MLLEMLGVEVDPKLQSLLRHRLDPPVSQAQVLVGQMVPAQVLLVAAAAGSGLLMGWAAGQGKPGS
Ga0193478_10684082	3300018769	Marine	MLQEMIGVEADPKLLSLFQNRFDPLVSQTQVLAEQKVVPAHVWPVAAAAESG
Ga0193407_10244301	3300018776	Marine	MLLEMVGAEADPKLLSLFQHRLDPLVSQAQVLVGQKVVPAQVLLVAAAAGSGLLGWAADQEKPGSQAKERAVLRSLQWLVEWKRAH
Ga0192839_10762232	3300018777	Marine	MLQEVVGVEVDPKQQSLLRHRCDPLVSQSQVLVEQKVVPAQVLLVAAAAGSGLLGWAADQEKSGS
Ga0193197_10606981	3300018783	Marine	MLLEMLGVEVDPKLQSLLRHRLDPPVSQAQVLVGQMVPAQVLLVAAAAGSGLLGWAADQGKPGS
Ga0193197_10731011	3300018783	Marine	MLQEMLGVEVDAKQQSLLRHRCDPRVSQSQVLVGQKVVPAQVWLVAVAAESGLLGWAADQEKPGS
Ga0193117_10346862	3300018796	Marine	MLGVEADPKLQSLFQKMLDTPVSQSQVLEEQKVVPAQVLLVVVAAESGLLGWAAGQGKPG
Ga0193117_10628532	3300018796	Marine	MLLEVFGAEADPKLQSLFRNTLDPPVSQSQVLVEQMVPAQVLLVAAAAGSGHLRWAAGQGKPGS
Ga0193397_100058872	3300018799	Marine	MLLEMIGAEADPKLQSLFQNRLDPPVSQAQVLVEQMVVPAQVWLVAADAESGLLGWVADQGKPGS
Ga0193183_10249282	3300018811	Marine	MLQEMLGVEVDAKQQSLLRHRCDPRVSQSQMLVGQKVVPAQVWLVAVAAESGLLGWAAGQEKPGS
Ga0193500_10880382	3300018847	Marine	MLQEMVGVEADPKLQSLFQHRLDPLVSQAQVLVEQMVPAQVLLVAAAAGSGLLGWAAGQGKPGS
Ga0193214_10450931	3300018854	Marine	MLLEMLGAEADPKLLSLFQHRLDPPVSQAQVLVGQKVVPAQVLLVVVAAGSGLLGWAAGQGKPGS
Ga0193199_11211161	3300018859	Marine	MLQEMLGVEVDAKQQSLLRHRCDPLVSQSQVLVGQKVVPAQVWLVAVAAESGLLGWAADQEKPGS
Ga0193553_10703302	3300018873	Marine	MLQEMIGAEADPKLQSSFQHRLDPPVSHARVLVGQKVVPAQVLLVVAAAAESGHLGWAVGQEKSGSQSMERSVLGLLRWLLEWKRAH
Ga0193553_10703321	3300018873	Marine	MLLEMLGVEVDPKLQSLFQHRRDPLVSQSQVLEEQRVFPAQVLLVVAAEAGSCLLG
Ga0193268_11054352	3300018898	Marine	MLQEMIGAEADPKLQSSFQHRLDPPVSQAQVLVGQRVVPAQVWLVAADAESGSGLLGWAVGQEKPGSQSMERSVLG
Ga0193268_11059692	3300018898	Marine	MLQEMIGAEADPKLLSLFQHRLDPPVSQAQVLAEQRVVPAQVLLAAAAAGFGLLGWVVGQEKSGSQSMGRAVQDLLRWLVGWKRAH
Ga0193268_11065311	3300018898	Marine	MLQEMIGAEVDPKLLSLFQNRLDPPVSQSQVLVEQRVVPAQVLLVAADAESALLRWAAGQEKPGV
Ga0193096_101631652	3300018924	Marine	MLQEMLGAEADPKLLSLFQNRLDPPVSQSQVLVEQMVVPAQVLLVVAAAGSGLLGWAAGLEKPGSQSMERAVLG
Ga0192921_102392631	3300018929	Marine	MLLEMVGAEADPKLQSLFQHRLDPLVSQTQVLVEQMVPAQVLLAAAADAESGLLGLVADQGKPGS
Ga0193265_101401742	3300018941	Marine	MLQEMIGVEADPKLLSLFQNRLDPPVSQSQVLVEQRVVPAQVLLVAADAESALLRWAAGQEKPGV
Ga0193265_101401752	3300018941	Marine	MLQEMIGVEADPKLLSLFQNRLDPPVSQTQVLVGQKVVPAQVLLAAADAESGLLGWAADQEKPGSQSMERSVLG
Ga0193266_100913432	3300018943	Marine	MLQEMIGAEVDPKLLSSFQHRLDPPVSQAQVLAEQRVVPAQLLLAAADAESGHLGWVADQEKPGS
Ga0193266_100913512	3300018943	Marine	MLQEMIGAEVDPKLLSSFQHRLDPPVSQAQVLAEQRVVPAQVLLAAAAAGFGLLGWVVGQEKSGSQSMGRAVQDLLRWLVGWKRAH
Ga0193528_103148181	3300018957	Marine	MLQEMVGVEADPKLQSLFQHRRDPLVSQSQVLVGQKVVPAQVSLVVVAAEYALLGWVAGQGKPGSRSMERSVLGLLQWLVAWKRAH
Ga0193087_101053602	3300018964	Marine	MLQEMIGAEADPKLLSLFQHRLDPLVSPAQVLVEQMVPAQVLLVAAAAGSGLLGWAADQEKPGS
Ga0193487_102821821	3300018978	Marine	MLLEMLGAEADPKLLSLFQHRLDPPVSQAQVLVEQKVVPAHVWPVAAAAESGLLGWAVGQEKPGSQSMERSVLG
Ga0193487_102828451	3300018978	Marine	MLQEMVGVEADPKLQSLFQHRLDPLVSQAQVLVEQRVVPAQVLLVAAAAESGLPGWAADQGKPGS
Ga0193487_102849972	3300018978	Marine	MLQEMVGVEADPKLQSLFQHRLDPLVSQAQVLVEQMVPAQVLLVAAAGSGLLGWAAGQGKPRSQSMERAVLRSLHWWLVEWKRAH
Ga0193487_102850031	3300018978	Marine	MLLEMVGAEADPKLQSLFQHRLDPPVSQSQVLEEQKVVPAHVWPVAAAAESGDLGWAADQEKPGSQSKERAVLG
Ga0193487_102850071	3300018978	Marine	MVGAEADPKLQSSFQNRLVPPVSQAQVLEEQRVVPAHVLLVAADAESGDLGWAAGQEKPGSQSMERSVLG
Ga0192916_100685552	3300018996	Marine	MLLEMVGAEADPKLLSLFQKRLDPPVSQTQVLEEQKVVPAQVLLVVVAAESGLLGWAADQEKPGS
Ga0193444_101885762	3300018998	Marine	MLQEMVGVEADPKLQSLFQHRLDPLVSQAQVLVGQKVPAQVLLVAAAAGSGLLRWVAGQEKPGS
Ga0193444_101885801	3300018998	Marine	MLQEMLGAEVDPKLLSLFQHRLDPPVSQAQVLVGQKVVPAQVLLAAADAESGLLGWAVGQEKPGSQSMERSVLG
Ga0193444_101885871	3300018998	Marine	MLLEMVGAEADPKLQSLFRNTLDPPVSQSQVLVEQMVPAQVLLVAAAGSGLLGWAAGQGKPRSQSMERAVLRSLHWWLVEWKRAH
Ga0193514_103038061	3300018999	Marine	MLLEMVGAEVDPKLQSLFQHRRDPLVSQSQVLVGQKVVPAQVLLVVVAAGSGLLRWAAGQEKPGSQSMGRAVLRSLHWLVEWRRAH
Ga0193514_103061942	3300018999	Marine	MLQEMIGAEADPKLQSLLRHRLDPVVSQAQVLVGQMVPAQVLLVAAAPGSDLLRWAAGQGKPGSQSIGRAVLGLLRWLVEWKRAH
Ga0193514_103061951	3300018999	Marine	MLLEMLGVEVDPKLQSLFHNRLDPLVSQAQVLVEQMVPAQVLIVAGTAGSGHLRWAADQGKLGS
Ga0193514_103126512	3300018999	Marine	MLLEMLGVEADPKLQSLFQKRLDPPVYQSQVLVGQMVPAQVLLVVVAAESGHLGWVADQEKPGSQSMERSVLGLLRWLVEWKRAH
Ga0193514_103126542	3300018999	Marine	MLGVEVDPKLQSLFQKRLDPPVYQSQVLVGQMVPAQVLLVVVAAESGHLGWVADQEKPGSQSMERSVLGLLRWLVEWKRAH
Ga0193154_101436221	3300019006	Marine	MLLEMLGVEVDPKLLSSFQHRLDPPVSQSQVLEEQRVVPAQVLLVVVVAAESGLLGWAADQGKPGSQSMERAVLGLLQWLVEWKRAH
Ga0193154_101547391	3300019006	Marine	MLLEMVGAEADPKLLSLFQKRLDPPVSQTQVLEEQKVVPAQVLLVAADAESGLLGWVAGQGKPGSQSMGRAVLDLLQWLVEWRRAH
Ga0193154_103149331	3300019006	Marine	MHLEMVGVEVDPKQQSLLRHRLDPLVSQSQVLLGQMVPAQVLLVVVAAGSGLLRWAAGQGKPGSQSMGRAVLGLLQWLVEWKRAH
Ga0193154_103156582	3300019006	Marine	MLQEMVGAEADPKLQSLFQHWLDPPVYQSQVLVGQMVPAQVLLVVVAAGSGLLRWAAGQGKPGSQSMGRAV
Ga0193196_104035231	3300019007	Marine	MLQEMVGVEADPKLQSLFQHRLDPLVSQAQVLVEQMVPAHFLLVAAAGSVLLEWAAGQEKPGS
Ga0193196_104802252	3300019007	Marine	MLLEMLGFEADPKLLSLFQKRLDPPVSQAQVLVEQMVPAQVLLVVAAAESGPLGWAAGQGKPGS
Ga0192926_103856131	3300019011	Marine	MLQEMLGVEADPKLQSLFQHRRDPLVSQSQVLVGQKVVPAQVLLVVVAAESGLLGWAAGQEKPGS
Ga0193299_103815322	3300019014	Marine	MLQEMVGVEADPRWQSLFQHRLDPPVSQAQVLVGQKVVPAQVLLAAADAESGLLGWAVGQEKPGSQSMERSVLG
Ga0193094_101332703	3300019016	Marine	MLQKMLGAEVDPKLLSLFQHRLDPPVSQAQVLVGQKVVPAQVLLAAADAESGLLGWAVGQEKPGSQSMERSVLG
Ga0193094_101778712	3300019016	Marine	MLQEMIGAEVDPKLLSSFQQRLDPPVSQAQVLAEQRVVPAQLLLAAADAESGHLGWVADQEKPGS
Ga0193555_102521621	3300019019	Marine	LLLEMVGAEADPKLQSSFQNRLVPPVSQAQVLEEQRVVPAHVLLVAADAESGDLGWAAGQEKPGSQSMERSVLG
Ga0193555_102704651	3300019019	Marine	MLLEMLGVEADPKLQSLFQHRLDPLVSQAQVLVEQMVPAQVLLVAAAGSGLLGWAAGQGKPRSQSMERAVLRSLHWWLVEWKRAH
Ga0193555_102978291	3300019019	Marine	MLLEMVGAEADPKLQSLLRHRCDPPVSQAQVLVEQRVVPAQVLLVAAAAESGLLGWAAGQGKPGSQSRETAVLGLLQQLEWKRAH
Ga0192857_100692722	3300019040	Marine	MLQEMLGAEVDPKLLSLFQHRLDPPVSQAQVLVEQKVVPAQVLLAAAAVAGSGXXXGHLGWAADQEKPGSQPMERSVLG
Ga0193189_101312222	3300019044	Marine	MLLEMFGVEVDPKLQSMLRHRLDPLVSQAQVLVEQMVPAQVLLVAAAAESGLLGWAADQGKPGSQAKEMAVLGLLQWLVEWKRAH
Ga0193208_105171592	3300019055	Marine	MLLEMVGAEADPKLLSLFQHRLDPPVSQSQVLVEQMVVPAQVLLAAAAESGLLGWAADQEKPGSQSMERSVLG
Ga0193208_105231912	3300019055	Marine	MLLEMLGFEADPKLLSLFQKRLDPPVSQAQVLVEQMVPAQVLLVAAAGSGLLGWAAGQGKPGS
Ga0193208_105353232	3300019055	Marine	MLLEMLGAEADPKLLSLFQHRLDPPVSQAQVLVGQMVPAQVLLVAAAAVSALLGLAADQGKPGS
Ga0193515_10684761	3300019134	Marine	MVGAEADPKLQSSFQHRLDPLVSQSQVLEEQMVPAQVSLAAAAAAAAESGLLRWAADQGKPGSQSMERSVLG
Ga0193515_10689912	3300019134	Marine	MLQEMVGAEADPKLQSLFQHRLDPPVSQSQVLVGQRVVPAQVLLVVAAEAGSGLLGWVAGQGKPGSQSMERSVLG
Ga0193515_10695261	3300019134	Marine	MHLEMVGVEVDPKQQSLLRHRLDPLVSQSQVLLGQMVPAQVLLVVVAAGSGLLRWAAGQEKPGSQSMGRAVLGLLRWLVEWKRAH
Ga0193112_11106891	3300019136	Marine	LLLEVLGAQADPKLQSLFQKRLDPPVFQSQVLEGQKVVPAQVLLVVVAAEYGLLGWAAGQEKPES
Ga0193112_11270891	3300019136	Marine	MLGAQADPKLQSLFQKMLDPLVFQAQVLEEQRVVPAQVLLVVAAESGLLVLVAGQEKPGSQSMERSVLGLLRWLVEWKRAR
Ga0193112_11318501	3300019136	Marine	LLLEMLGAEVDPKLQSLFQHRLDPHVFQSQVLEEQKVVPAQVLLAAAAAEYGLLGWAAGQEKPGSQSMGRAVLGLLRWLVEWKRAH
Ga0193112_11394761	3300019136	Marine	MLQEMVGVEADAKQQSLLQHRRDHLVSQAQVLVEQMVVPAQVLLVVVVVESGHLGWAAGQEKPGSQSMGRAVLGLLRWLVEWKRAH
Ga0193112_11480271	3300019136	Marine	MLGVEVDPKLLSLFQHRLDPLVSQSQVLEEQKVVPAQVLLVVAAAAESGLLGWAAGQEKPGSQSMEMAVLGLLRRFVEWKRAH
Ga0193112_11542511	3300019136	Marine	MPLEMLGVEADPKLQSSFQHRLDPLVSQSQVLVGQKVVPAQVLLVVVAAESGHLRWAAGQEKPGSQSMGRAVLGLLRWLVEWKRAH
Ga0193453_11960541	3300019147	Marine	MLLEMLGVEADPKLLSLFQKRLDPPVSQAQVLVEQRVVPAQVLLVAAAAESGLLGWAAGQGKPGS
Ga0073985_100127031	3300030918	Marine	MLQEMVGVEADPKLQSLLRHRRDPLVSQSQVLVGQKVVPVQVLLVVVAAEYGLLGWVAGQGKPGS
Ga0073985_100153962	3300030918	Marine	MLGVEADPKLQSLFQKRLDPPVSQSQVLVGQRVVPAQVLLVVVAAESGLL
Ga0073986_120099201	3300031038	Marine	MLPEMLGVEADPKLQSLFQHRRDPLVSQAQVLVEQKVVPAQVLLVAAAAGSGLLRWAAGQGKPGSQSMGRAVLGLLQWLVEWERAH
Ga0138346_101472342	3300031056	Marine	MLLEMVGVEADPKQQSLFQHRLDPLVSQSQVLVELMVPAQVLLVVVVAAESGFLGWAAGQGKPGSQSMGRAVLGLLQWLV
Ga0073954_115367092	3300031465	Marine	MVGAEVDPKLQSSFQHRLDPLVSQSQVLVEQMVPAQVLFVVVVAAESGLLG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metatranscriptome Family F086565

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences