Metagenome / Metatranscriptome Family F086454

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086454
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	69 residues
Representative Sequence	MLKTFAVALLAIAMSVGLAQAKGHRQTTPRCAEGQQATATCFCGVAIGGQPVLCQKGQWCHGWWLRACTP
Number of Associated Samples	69
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	95.45 %
% of genes near scaffold ends (potentially truncated)	30.00 %
% of genes from short scaffolds (< 2000 bps)	73.64 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (52.727 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (30.000 % of family members)
Environment Ontology (ENVO)	Unclassified (50.909 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.364 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 20.41% β-sheet: 17.35% Coil/Unstructured: 62.24%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00582	Usp	6.36
PF04972	BON	4.55
PF12071	DUF3551	2.73
PF00571	CBS	2.73
PF02566	OsmC	2.73
PF13185	GAF_2	2.73
PF02683	DsbD	1.82
PF07813	LTXXQ	1.82
PF05726	Pirin_C	1.82
PF16868	NMT1_3	1.82
PF04392	ABC_sub_bind	1.82
PF08245	Mur_ligase_M	0.91
PF00085	Thioredoxin	0.91
PF06863	DUF1254	0.91
PF03330	DPBB_1	0.91
PF09851	SHOCT	0.91
PF07687	M20_dimer	0.91
PF02265	S1-P1_nuclease	0.91
PF00589	Phage_integrase	0.91
PF00595	PDZ	0.91
PF07045	DUF1330	0.91
PF03060	NMO	0.91
PF00072	Response_reg	0.91
PF01790	LGT	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	7.27
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	2.73
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	2.73
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	1.82
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.82
COG0516	IMP dehydrogenase/GMP reductase	Nucleotide transport and metabolism [F]	0.91
COG0682	Prolipoprotein diacylglyceryltransferase	Cell wall/membrane/envelope biogenesis [M]	0.91
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.91
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	0.91
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.73 %
Unclassified	root	N/A	47.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.73 %
Unclassified	root	N/A	47.27 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.73 %
Unclassified	root	N/A	47.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	42.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.27 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	24.55 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.27 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	18.18 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.73 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.91 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.27 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.36 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.82 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.91 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.91 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.91 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.91 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.27 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.64 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.82 %
Roseovarius	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Roseovarius	0.91 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.91 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.91 %
Nitrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	0.91 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.91 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.27 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.82 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.91 %
unclassified Roseovarius	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Roseovarius → unclassified Roseovarius	0.91 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.91 %
unclassified Nitrobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter	0.91 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.91 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.91 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.27 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.82 %
Mesorhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	0.91 %
Rhodoplanes sp. JGI PP 4-B12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	0.91 %
Roseovarius sp. SCSIO 43702	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Roseovarius → unclassified Roseovarius → Roseovarius sp. SCSIO 43702	0.91 %
Nitrobacter sp. Nb-311A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	0.91 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.91 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.91 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10035402	Not Available	1336	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10001684	All Organisms → cellular organisms → Bacteria → Proteobacteria	4792	Open in IMG/M
3300000816\|AF_2010_repII_A10DRAFT_1034578	Not Available	533	Open in IMG/M
3300000893\|AP72_2010_repI_A001DRAFT_1037776	Not Available	757	Open in IMG/M
3300004633\|Ga0066395_10002756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6068	Open in IMG/M
3300004633\|Ga0066395_10020483	Not Available	2622	Open in IMG/M
3300005332\|Ga0066388_100133474	All Organisms → cellular organisms → Bacteria	3033	Open in IMG/M
3300005332\|Ga0066388_100170725	All Organisms → cellular organisms → Bacteria → Proteobacteria	2774	Open in IMG/M
3300005332\|Ga0066388_100620063	All Organisms → cellular organisms → Bacteria → Proteobacteria	1701	Open in IMG/M
3300005332\|Ga0066388_101652231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	1131	Open in IMG/M
3300005332\|Ga0066388_103075727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	852	Open in IMG/M
3300005332\|Ga0066388_103200903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	836	Open in IMG/M
3300005332\|Ga0066388_105678034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	631	Open in IMG/M
3300005363\|Ga0008090_15562839	Not Available	1386	Open in IMG/M
3300005437\|Ga0070710_10027755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3022	Open in IMG/M
3300005713\|Ga0066905_102072277	Not Available	529	Open in IMG/M
3300005764\|Ga0066903_100022702	All Organisms → cellular organisms → Bacteria	6774	Open in IMG/M
3300005764\|Ga0066903_100660082	Not Available	1831	Open in IMG/M
3300005764\|Ga0066903_100908965	All Organisms → cellular organisms → Bacteria	1594	Open in IMG/M
3300005764\|Ga0066903_103162800	Not Available	891	Open in IMG/M
3300005764\|Ga0066903_108553487	Not Available	521	Open in IMG/M
3300009792\|Ga0126374_10022686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2788	Open in IMG/M
3300010043\|Ga0126380_11410102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	612	Open in IMG/M
3300010047\|Ga0126382_12432554	Not Available	509	Open in IMG/M
3300010048\|Ga0126373_10053856	All Organisms → cellular organisms → Bacteria	3584	Open in IMG/M
3300010048\|Ga0126373_10065513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3266	Open in IMG/M
3300010048\|Ga0126373_10249220	All Organisms → cellular organisms → Bacteria → Proteobacteria	1747	Open in IMG/M
3300010048\|Ga0126373_10720221	Not Available	1057	Open in IMG/M
3300010048\|Ga0126373_10948704	Not Available	925	Open in IMG/M
3300010048\|Ga0126373_12811293	Not Available	543	Open in IMG/M
3300010048\|Ga0126373_13235914	Not Available	507	Open in IMG/M
3300010358\|Ga0126370_10297701	Not Available	1278	Open in IMG/M
3300010360\|Ga0126372_10024979	All Organisms → cellular organisms → Bacteria	3621	Open in IMG/M
3300010360\|Ga0126372_10498090	Not Available	1143	Open in IMG/M
3300010360\|Ga0126372_11884880	Not Available	642	Open in IMG/M
3300010361\|Ga0126378_10029788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4868	Open in IMG/M
3300010376\|Ga0126381_100640437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	1516	Open in IMG/M
3300010376\|Ga0126381_101724386	Not Available	905	Open in IMG/M
3300010376\|Ga0126381_103146723	Not Available	653	Open in IMG/M
3300010398\|Ga0126383_10231546	All Organisms → cellular organisms → Bacteria → Proteobacteria	1798	Open in IMG/M
3300010398\|Ga0126383_10496138	Not Available	1279	Open in IMG/M
3300012948\|Ga0126375_10030941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2650	Open in IMG/M
3300012948\|Ga0126375_10631173	Not Available	823	Open in IMG/M
3300012971\|Ga0126369_10208931	All Organisms → cellular organisms → Bacteria → Proteobacteria	1889	Open in IMG/M
3300016270\|Ga0182036_10612502	Not Available	874	Open in IMG/M
3300016270\|Ga0182036_10830520	Not Available	754	Open in IMG/M
3300016270\|Ga0182036_10908517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	722	Open in IMG/M
3300016294\|Ga0182041_10035377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3249	Open in IMG/M
3300016319\|Ga0182033_12195277	Not Available	504	Open in IMG/M
3300016341\|Ga0182035_10335368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1252	Open in IMG/M
3300016341\|Ga0182035_10718349	Not Available	872	Open in IMG/M
3300016357\|Ga0182032_10343113	Not Available	1193	Open in IMG/M
3300016404\|Ga0182037_10696199	Not Available	870	Open in IMG/M
3300016422\|Ga0182039_10014866	All Organisms → cellular organisms → Bacteria → Proteobacteria	4640	Open in IMG/M
3300016422\|Ga0182039_10362672	Not Available	1220	Open in IMG/M
3300017966\|Ga0187776_11392963	Not Available	534	Open in IMG/M
3300020579\|Ga0210407_10245784	Not Available	1394	Open in IMG/M
3300021420\|Ga0210394_10996512	All Organisms → cellular organisms → Bacteria → Proteobacteria	726	Open in IMG/M
3300021560\|Ga0126371_10032275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4912	Open in IMG/M
3300021560\|Ga0126371_10051062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3958	Open in IMG/M
3300021560\|Ga0126371_10103377	All Organisms → cellular organisms → Bacteria → Proteobacteria	2843	Open in IMG/M
3300021560\|Ga0126371_10139391	All Organisms → cellular organisms → Bacteria	2474	Open in IMG/M
3300021560\|Ga0126371_10165005	All Organisms → cellular organisms → Bacteria	2287	Open in IMG/M
3300021560\|Ga0126371_11571450	Not Available	784	Open in IMG/M
3300025898\|Ga0207692_10093366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1637	Open in IMG/M
3300025915\|Ga0207693_10004938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11208	Open in IMG/M
3300027874\|Ga0209465_10050358	All Organisms → cellular organisms → Bacteria → Proteobacteria	1991	Open in IMG/M
3300027874\|Ga0209465_10063582	Not Available	1780	Open in IMG/M
3300027874\|Ga0209465_10100277	Not Available	1420	Open in IMG/M
3300031231\|Ga0170824_110709141	Not Available	652	Open in IMG/M
3300031545\|Ga0318541_10447530	Not Available	722	Open in IMG/M
3300031546\|Ga0318538_10136226	All Organisms → cellular organisms → Bacteria → Proteobacteria	1290	Open in IMG/M
3300031549\|Ga0318571_10045311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Roseovarius → unclassified Roseovarius → Roseovarius sp. SCSIO 43702	1290	Open in IMG/M
3300031561\|Ga0318528_10069687	All Organisms → cellular organisms → Bacteria → Proteobacteria	1809	Open in IMG/M
3300031564\|Ga0318573_10114379	All Organisms → cellular organisms → Bacteria	1395	Open in IMG/M
3300031572\|Ga0318515_10709307	Not Available	532	Open in IMG/M
3300031573\|Ga0310915_11053702	Not Available	566	Open in IMG/M
3300031679\|Ga0318561_10339606	All Organisms → cellular organisms → Bacteria → Proteobacteria	823	Open in IMG/M
3300031679\|Ga0318561_10470971	All Organisms → cellular organisms → Bacteria → Proteobacteria	691	Open in IMG/M
3300031681\|Ga0318572_10860144	Not Available	539	Open in IMG/M
3300031723\|Ga0318493_10703900	Not Available	566	Open in IMG/M
3300031723\|Ga0318493_10858184	Not Available	513	Open in IMG/M
3300031744\|Ga0306918_11366788	Not Available	543	Open in IMG/M
3300031753\|Ga0307477_10008813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6970	Open in IMG/M
3300031763\|Ga0318537_10239213	Not Available	674	Open in IMG/M
3300031765\|Ga0318554_10039469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2560	Open in IMG/M
3300031769\|Ga0318526_10350030	Not Available	604	Open in IMG/M
3300031770\|Ga0318521_10453836	Not Available	767	Open in IMG/M
3300031781\|Ga0318547_10203056	All Organisms → cellular organisms → Bacteria	1184	Open in IMG/M
3300031796\|Ga0318576_10300185	Not Available	758	Open in IMG/M
3300031798\|Ga0318523_10013338	All Organisms → cellular organisms → Bacteria	3408	Open in IMG/M
3300031798\|Ga0318523_10328933	All Organisms → cellular organisms → Bacteria → Proteobacteria	762	Open in IMG/M
3300031799\|Ga0318565_10024174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2696	Open in IMG/M
3300031833\|Ga0310917_10231309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1242	Open in IMG/M
3300031833\|Ga0310917_10683452	Not Available	695	Open in IMG/M
3300031890\|Ga0306925_10090583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	3247	Open in IMG/M
3300031890\|Ga0306925_12223854	Not Available	509	Open in IMG/M
3300031942\|Ga0310916_10025855	All Organisms → cellular organisms → Bacteria → Proteobacteria	4237	Open in IMG/M
3300031945\|Ga0310913_10325406	All Organisms → cellular organisms → Bacteria → Proteobacteria	1086	Open in IMG/M
3300031954\|Ga0306926_10243909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2227	Open in IMG/M
3300031954\|Ga0306926_10543644	All Organisms → cellular organisms → Bacteria	1423	Open in IMG/M
3300032001\|Ga0306922_10285002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1775	Open in IMG/M
3300032044\|Ga0318558_10070495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1589	Open in IMG/M
3300032044\|Ga0318558_10678373	All Organisms → cellular organisms → Bacteria → Proteobacteria	515	Open in IMG/M
3300032054\|Ga0318570_10595347	Not Available	504	Open in IMG/M
3300032063\|Ga0318504_10141713	Not Available	1103	Open in IMG/M
3300032066\|Ga0318514_10673714	Not Available	550	Open in IMG/M
3300032205\|Ga0307472_100646064	All Organisms → cellular organisms → Bacteria → Proteobacteria	942	Open in IMG/M
3300032261\|Ga0306920_101159160	Not Available	1118	Open in IMG/M
3300033289\|Ga0310914_10158003	Not Available	2005	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.00%
Loam	Environmental → Terrestrial → Soil → Loam	19.09%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	52.73%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.73%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	26.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	16.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.82%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.91%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000816	Forest soil microbial communities from Amazon forest - 2010 replicate II A10	Environmental	Open in IMG/M
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100354024	3300000597	Forest Soil	MLRTFAAALLAIAMSVGLAQAKGHRQRTPLCAVGQQATATCACGVGLSGQLVLCQKGQWCHGLSMRGMRVCTS*
AF_2010_repII_A001DRAFT_100016842	3300000793	Forest Soil	MLRTFAVALLAIAMSVGLAQAKVHKHMPGCIMGQPATATCLCGVSFTRQPVLCQKGQWCHWQWRICTP*
AF_2010_repII_A10DRAFT_10345782	3300000816	Forest Soil	MLRTFAVAVLAIAMSVGLAQAKVHKHMPGCIMGQPATATCLCGVSFTSQPVLCQKGQWCHWQWRTCTP*
AP72_2010_repI_A001DRAFT_10377761	3300000893	Forest Soil	MSAGIKFKLLNSREEENMLRTFAVALLAIAMSVGLAQAKVHKQMPGCVMGQPANATCLCGVSLTRQPVLCQKGQW
Ga0066395_100027568	3300004633	Tropical Forest Soil	MLKTLAVALLAVGMSVGLAQAKGQRQRIPACGEGKQATTTCACGIGAGGKPLLCQKGQWCHGWWIRACTP*
Ga0066395_100204834	3300004633	Tropical Forest Soil	MLRTFAVALLAIAMSVGLAQAKGHRQRTPLCALNQQATATCLCGVALTGQPVLCQKGQWCHGWEMRGMRVCTP*
Ga0066388_1001334741	3300005332	Tropical Forest Soil	MLRTFAVALLAVAMSVGLAQAKGHRQVTPRCGEGQQATATCFCGVAIGGHPVLCQKGQWCHGVWLRACTP*
Ga0066388_1001707253	3300005332	Tropical Forest Soil	MLKTFAVALLAIAMSVGLAQAKGHRQTTPRCAEGQQAAATCFCGVAIGGQPVLCQKGQWCHGWWLRACTP*
Ga0066388_1006200633	3300005332	Tropical Forest Soil	MLRTFAVALLAIAVSVGLAQAKGHKHTIPNCIVGQQATATCHCGVTLTNQPVLCQKGQWCHGQWRACTP*
Ga0066388_1016522316	3300005332	Tropical Forest Soil	MLRTFAVALLAIVVSVGLAQARGHRQVTPRCAEGQQATATCFCGVAIGGQPVLCQKGQWCHG
Ga0066388_1030757272	3300005332	Tropical Forest Soil	MLRTLVVALLAVGMSAGLAQAKVHRQTTPRCAEGQQATATCFCGVTVGGQPVLCQKGQWCHGWWMRACTP*
Ga0066388_1032009031	3300005332	Tropical Forest Soil	MLRTFAVALLAIAMSVGLAQAKGPRQRTPLCAEGQPATATCVCGVALGGQPVLCQKG
Ga0066388_1056780341	3300005332	Tropical Forest Soil	MLRTFAVALLAIAMSVGLAQARVHKHMPGCIMGQPATATCLCGVSFTRQPVLCQKGQWCHWQWRIC
Ga0008090_155628391	3300005363	Tropical Rainforest Soil	MLRTFAAALLAIAMSVGLAQAKGHRQRTPLCAVGQQATATCACGVGLSGQLMLCQKGQWCHGLSMRGMRVCTS*
Ga0070710_100277553	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MLRIFAVALLAVGMSVGLAQAKGHKQRIAACGEGQQATATCCGIGAGGRPLLCQKGQWCHGWMMRACTP*
Ga0066905_1020722773	3300005713	Tropical Forest Soil	MLKTLAVALLAVGMSVGLAQAKGHRQTTPRCAEGQQATATCFCGVAIGGQPVLCQKGQWCHGWWLRACTP*
Ga0066903_1000227027	3300005764	Tropical Forest Soil	MLRTLVVALLAVGMSAGLAQAKGHRQTTPRCVEGQQATATCFCGVAVGGQPVLCQKGQWCHGWWMRACTP*
Ga0066903_1006600822	3300005764	Tropical Forest Soil	MLRTFTVVLLAIGMSVGLAEAKGHRQSTPRCAEGQQAAATCFCGVAIGGQPVLCQKGQWCHGWWLRACTP*
Ga0066903_1009089653	3300005764	Tropical Forest Soil	MLKILAVALLAVGMSVGLAQAKGHRQTTPRCVEGQQATATCFCGVAIGGQPVLCQKGQWCHGWWLRACTP*
Ga0066903_1031628002	3300005764	Tropical Forest Soil	MLRTFAVALLAIAMSVGLAEAKGSRQRTPMCAVGQQATATCLCGVGWTGQSVLCQKGQWCHGWTFPGMRACTP*
Ga0066903_1085534871	3300005764	Tropical Forest Soil	MLRTFAVALLAIAKSVGLAQAKGHRQRTPLCALNQQATATCLCGVALTGQPVLCQKGQWCHGWEMRGMRVCTP*
Ga0126374_100226862	3300009792	Tropical Forest Soil	MLKTLAVALLAVGMSVGLAQAKGHRQTTPRCTEGQQATATCFCGVAIGGQPVLCQKGQWCHGWWLRACTP*
Ga0126380_114101022	3300010043	Tropical Forest Soil	MLKILAVALLAVGMSAGLAQAKVHRQTTPRCAEGQQATATCFCGVTVGGQPVLCQKGQWCHGWWMRACTP*
Ga0126382_124325542	3300010047	Tropical Forest Soil	MLKTFAVALLAIAMSVGLAQAKGHRQTTPRCAEGQQATATCFCGVAIGGQPVLCQKGQWCHGWWLRACTP*
Ga0126373_100538563	3300010048	Tropical Forest Soil	MLRTFAVALLAIVVSVGLAQARGHRQVTPRCAEGQQATATCFCGVAIGGQPVLCQKGQWCHGSWLRACTP*
Ga0126373_100655135	3300010048	Tropical Forest Soil	MLKILAVALLAVGMSVGLAQAKGHRQTTPRCAEGQQATATCFCGVAIGGQPVLCQKGQWCHGWWLRACTP*
Ga0126373_102492203	3300010048	Tropical Forest Soil	MLRTFAVALLAIAMSVGLAQAKVHKHMPGCIMGQPATATCLCGVTFTRQPVLCQKGQWCHWQWRICTP*
Ga0126373_107202211	3300010048	Tropical Forest Soil	MLRTFAAALLAVAMSVGLAQAKGHRQRTPLCAVNQQATATCICGVRSLGGQLVLCQKGHWCHGWEMRGMRVCTP*
Ga0126373_109487042	3300010048	Tropical Forest Soil	MLRTFAVALLAIAMSVGLAQAKGHRQRTPLCAVNQQATATCLCGVALTGQPVLCQKGQWCHGWEARGMRVCTP*
Ga0126373_128112931	3300010048	Tropical Forest Soil	MLRTFAVALLAIAMSVGLAQAKGARQRTPLCAVGQQATATCLCGVGATGQSVLCQKGQWCHG
Ga0126373_132359141	3300010048	Tropical Forest Soil	MLRTLAVALLAIAVSVGLAQAKGHKHTIPNCIVGQQATATCHCGVTLTNQPVLCQKGQWCHGQWRACTP*
Ga0126370_102977012	3300010358	Tropical Forest Soil	MLRTFAAALLAVAMSVGLAQAKGHRQRTPLCAVNQQATATCICGVRSLGGQLVLCQKGQWCHGWEMRGMRVCTP*
Ga0126372_100249796	3300010360	Tropical Forest Soil	MLRTFAVALLAIAMSVGLAQAKGHRQRSPLCALNQQATATCLCGVALTGQPVLCQKGQWCHGWEMRGMRVCTP*
Ga0126372_104980902	3300010360	Tropical Forest Soil	MLRTFAAALLAIAMSVGLAQAKGHRQRTPLCAEGQPATATCVCGVALGGQPVLCQKGQWCHGLWMRGLRVCTS*
Ga0126372_118848801	3300010360	Tropical Forest Soil	MLRTFAVALLAIAMSVGLAQAKGPRQRTPLCAEAQPATATCVCGVALGGQPVLCQKGQWCHGL
Ga0126378_100297887	3300010361	Tropical Forest Soil	MLRTFAVALLAIAVSVGLAQAKVHKQMPGCIMGQPATATCLCGVSFTRQPVLCQKGQWCHWQWRICTP*
Ga0126381_1006404372	3300010376	Tropical Forest Soil	MLKTLTVALLAVGMSVGLAQAKGHKQRIPACGEGKQATTTCACGIGAGGRPLLCQKGQWCHGWIRACTP*
Ga0126381_1017243861	3300010376	Tropical Forest Soil	MLRTFMIVPLAIAMSIGLAQAKVHKHTIPNCIVGQQATATCHCGVTLTNQPVLCQKGQWCHGQWRACTP*
Ga0126381_1031467231	3300010376	Tropical Forest Soil	MLRTFAVALLAIAMSVGLAQAKVHKHMPGCIMGQPATATCLCGVSFTRQPVLCQKGQWCHWQGRICTP*
Ga0126383_102315461	3300010398	Tropical Forest Soil	MLRTFAVALLAIAMSVGLAQAKVHKHMPGCIMGQPATATCLCGVSFTRQPVLCQK
Ga0126383_104961382	3300010398	Tropical Forest Soil	MLRTFAVALLAIAMSVGLAQAKEHKRCIVGQQATATCLCGVTLSGRPVLCQKGQWCHGQWRACTP*
Ga0126375_100309413	3300012948	Tropical Forest Soil	MLKTLTVALLAVGMSVGLAQAKGHKQRIPACGEGKQATTTCACGIGAGGRPLLCQKGQWCHGWWIRACTP*
Ga0126375_106311731	3300012948	Tropical Forest Soil	MLKTFAVALLAIAMSVGLAQAKGHRQRTPLCAEGQQATATCVCGVALTGQPVLCQKGQWCHGLWMRGMRVCTQ*
Ga0126369_102089314	3300012971	Tropical Forest Soil	KVLSRNLREEETMLKTFAEALLAIAMSVGLAQAKGHRQTTPRCAEGQQAAATCFCGVAIGGQPVLCQKGQWCHGWWLRACTP*
Ga0182036_106125021	3300016270	Soil	MLRTFAVALLAIAMSVGLAQAKGPRQRTPVCAEGQPATATCVCGVALGGQPVLCQKGQWCHGLWMRGLRV
Ga0182036_108305201	3300016270	Soil	MLRNFAVALLAIAMSVGLAQAKGHRQRTPLCAVNQQATATCLCGVALTGQPVLCQKGQWCHGWEMRGMRVCTP
Ga0182036_109085172	3300016270	Soil	MLRTFAAALLAVAMSVGLAQAKGHRQRTPLCAVNQQATATCICGVRSLGGQPVLCRKGQYCHGWSIGGM
Ga0182041_100353777	3300016294	Soil	MLRTFGVALLAIVVSVGLAQARGHRQVTPRCAEGQQATATCFCGVAIGGQPVLCPKGQWCHGSWLRACTP
Ga0182033_121952771	3300016319	Soil	MLRDFAVALLAIAMSVGLAQAKGHRQRTPLCAVNQQATATCLCGVALTGHPVLCQKGQWCHGWEMRGMRVCTP
Ga0182035_103353681	3300016341	Soil	LVIPAGIKFQHLKGGKTMLRTLAVALLAIAMSVGLAQAKMHKHMPGCIVGQPATATCLCGVSFTRQPVLCQKGQWCHWQWRICTP
Ga0182035_107183493	3300016341	Soil	MLRTFAAALLAIAMSVGLAQAKGHRQRTPLCAVGQQATATCACGVGLSGQLVLCQKGQWCHGLSMRGMRV
Ga0182032_103431133	3300016357	Soil	MLRTFAVALLAIAMSVGLAQAKVHKHMPGCIMGQPATATCLCGVSFTFTRQPVLCQKGQWCHWQWRICTP
Ga0182037_106961991	3300016404	Soil	MLRTFAVALLAIAMSVGLAQAKGPRQRTPVCAEGQPATATCVCGVALSGQPVLCQKGQ
Ga0182039_100148662	3300016422	Soil	MLKTLAVALLAVGMSVGMAQAKGHRQTTPRCTEGQQATATCFCGVAIGGQPVLCQKGQWCHGWWLRACTP
Ga0182039_103626721	3300016422	Soil	MLRTFAVALLAIAMSVGLAQARVHKHMPGCIMGQPATATCLCGVSFTRQPMLCQKGQWCLWQWRICTP
Ga0187776_113929631	3300017966	Tropical Peatland	MLKTFAIALLAVAMSVGLAQAKGHKQRTPMCAEGQQATATCFCGVAIGGHPVLCQKGQWCHGWLMRACTP
Ga0210407_102457843	3300020579	Soil	MLRTFAVALLAIAMSVGLAQAKGHRQRTPLCAVGQQATATCACGVGLSRQLVLCQKGQWCHGWSMPGMRVCTQ
Ga0210394_109965121	3300021420	Soil	MLKTLAVALLAVGMSVGLAQAKGHRQSTPRCAEGQQATGTCSCGVAIGGQPVLCQKGQWCHGWWMRG
Ga0126371_100322756	3300021560	Tropical Forest Soil	MLKTLAVALLAVGMSVGLAQAKGHRQTTPRCTEGQQATATCFCGVAIGGQPVLCQKGQWCHGWWLRACTP
Ga0126371_100510622	3300021560	Tropical Forest Soil	MLKILAVALLAVGMSVGLAQAKGHRQTTPRCAEGQQATATCFCGVAIGGQPVLCQKGQWCHGWWLRACTP
Ga0126371_101033773	3300021560	Tropical Forest Soil	MLRTFAVALLAIVVSVGLAQARGHRQVTPRCAEGQQATATCFCGVAIGGQPVLCQKGQWCHGSWLRACTP
Ga0126371_101393912	3300021560	Tropical Forest Soil	MLRTFAVALLAIAMSVGLAQAKGHRQRTPLCALNQQATATCLCGVALTGQPVLCQKGQWCHGWEMRGMRVCTP
Ga0126371_101650052	3300021560	Tropical Forest Soil	MLKTFAVALLAIAMSVGLAQAKGHRQTTPRCAEGQQAAATCFCGVAIGGQPVLCQKGQWCHGWWLRACTP
Ga0126371_115714502	3300021560	Tropical Forest Soil	MLKTLAVALLAVGMSVGLAQAKGQRQRIPACGEGKQATTTCACGIGAGGKPLLCQKGQWCHGWWIRACTP
Ga0207692_100933661	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MLRIFAVALLAVGMSVGLAQAKGHKQRIAACGEGQQATATCCGIGAGGRPLLCQMQWCHGWM
Ga0207693_1000493813	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MLRIFAVALLAVGMSVGLAQAKGHKQRIAACGEGQQATATCCGIGAGGRPLLCQKGQWCHGWMMRACTP
Ga0209465_100503584	3300027874	Tropical Forest Soil	MLRTFAVALLAIAMSVGLAQAKVHKHMPGCIMGQPATATCLCGVSFTRQPVLCQKGQWCHWQWRICTP
Ga0209465_100635824	3300027874	Tropical Forest Soil	MLRTFAAALLAIAMSVGLAQAKGHRQRTPLCAVGQQATATCACGVGLSGQLVLCQKGQWCHGLSMRGMRVCTS
Ga0209465_101002773	3300027874	Tropical Forest Soil	MLRTFAAALLAVAMSVGLAQAKGHRQRTPLCAVNQQATATCICGVRSLGGQLVLCQKGQWCHGWEMRGMRVCTP
Ga0170824_1107091411	3300031231	Forest Soil	MLRTFAVALLAIAMSVGLAQAKGHRQRTPLCAVGQQATATCACGVGLSGQLVLCQKGQWCHGISMRGMRVCTQ
Ga0318541_104475302	3300031545	Soil	MLRTFAVALLAIAMSVGLAQAKMHKHMPGCIVGQPATATCLCGVSFTRQPVLCQKGQWCLWQWRICTP
Ga0318538_101362261	3300031546	Soil	MLRTFAVALLAIAVSVGLAQAKGHKHTIPNCIAGQQATATCHCGVTLTNQPVLCQRGNG
Ga0318571_100453113	3300031549	Soil	MLKTLAVALLAVGMSVGLAQAKGQRQRIPACGEGKQATTTCACGIGAGGKPLLCQKGQWCHGWWLRACTP
Ga0318528_100696872	3300031561	Soil	MLRTFAVALLAIAVSVGLAQAKGHKHTIPNCIVGQQATATCHCGVTLTNQPVLCQKGQWCCTP
Ga0318573_101143792	3300031564	Soil	MLKILAVALLAVGMSVGLAQAKGHRQTTPRCFEGQQATATCFCGVAIGGQPVLCQKGQWCHGWWLRACTP
Ga0318515_107093071	3300031572	Soil	MLKILAVALLAVGMSVGLAQAKGHRQTTPRCVEGQQATATCFCGVAIGGQPVLCQKGQWCHGWWLRACTP
Ga0310915_110537021	3300031573	Soil	MSAGIKFQRLPREEDNMLRDFAVALLAIAMSVGLAQAKGHRQRTPLCAVNQQATATCLCGVALTGQPVLCQKGQWCHGWEMRGMRVCTP
Ga0318561_103396061	3300031679	Soil	MLRTFAVALLAIAMSVGLAQAKMHKHMPGCIVGQPATATCLCGVSFTRQPVLCQKGQWCLWQWRI
Ga0318561_104709711	3300031679	Soil	MLRTFAVALLAIAVSVGLAQAKGHKHTIPNCIVGQQATATCHCGVTLTNQPVLCQKGQWCHGQWRACTP
Ga0318572_108601441	3300031681	Soil	MLRTFAVALLAIAMSIGLAQAKGPRQRTPLCAEGQPATATCVCGVALGGQPVLCQKGQWCHGLWMRGLRV
Ga0318493_107039001	3300031723	Soil	MLRTFAVALLAIAMSIGLAQAKGPRQRTPLCAEGQPATATCVCGVTLGGQPVLCQKGQWCHGLWMRGLRVCTS
Ga0318493_108581841	3300031723	Soil	MLKILAVALLAVGMSVGLAQAKGHRQTTPRCVEGQQATATCFCGVAIGGQPVLCQK
Ga0306918_113667881	3300031744	Soil	MLKILAVALLAVGMSVGLAQAKGHRQTTPRCVEGQQATATCFCGVAIGGQPVLCQKGQWCHGWWLRACT
Ga0307477_100088133	3300031753	Hardwood Forest Soil	MLKTLAVALLAVGMSVGLAQAKGHRQSTPRCAEGQQATGTCFCGVAIGGQPVLCQKGQWCHGWWMRACTP
Ga0318537_102392131	3300031763	Soil	MLKILAVALLAVGMSVGLAQAKGHRQTTPRCVEGQQATATCFCGVAIGGQPVLCQKGQWC
Ga0318554_100394691	3300031765	Soil	MLRTFAAALLAIAMSVGLAQAKGHRQRTPLCAVGQQATATCACGVGLSGCQKGQWCHGLSMRGMRVCTS
Ga0318526_103500301	3300031769	Soil	MLRTFAVALVAIAVSVGLAQAKGHKHTIPNCIVGQQATATCHCGVTLTNQPVLCQKGQWCCTP
Ga0318521_104538361	3300031770	Soil	MLKTLAVALLAVGMSVGLAQAKGQRQRIPACGEGKQATMTCACGIGAGGKPLLCQKGQWCHGWWIRACTP
Ga0318547_102030561	3300031781	Soil	MLKILAVALLAVGMSVGLAQAKGHRQTTPRCVEGQQATATCFCGVAIGGQPVLCQKGQWCHG
Ga0318576_103001851	3300031796	Soil	MLRTFAVALLAIAMSIGLAQAKGPRQRTPLCAEGQPATATCVCGVALGGQPVLCQKGQWCHGLWMRGLRVCTS
Ga0318523_100133387	3300031798	Soil	MLRTFAVALLAIAMSVGLAQAKGHRQRTPLCAVGQQATATCACGVGLSGQLVLCQKGQWCHGLSMRGMRVCTS
Ga0318523_103289332	3300031798	Soil	MLRTFAVALLAIAVSVGLAQAKGHKHTIPNCIVGQQATATCHCGVTLTNQPVLCQKGQW
Ga0318565_100241743	3300031799	Soil	MLKTLAVALLAVGMSVGLAQAKGQRQRIPACACGIGAGGKPLLCQKGQWCHGWWIRACTP
Ga0310917_102313091	3300031833	Soil	MLRTFAVALLAIAMSVGLAQARVHRHMPGCIMGQPATATCLCGVSFTRQPVLCQKGQWCLWQWRICTP
Ga0310917_106834521	3300031833	Soil	MLKILAVALLAVGMSVGLAQAKGHRQTTPRCVEGQQATATCFCGVAIGGQPVLCQKGQWCHGWW
Ga0306925_100905833	3300031890	Soil	MLRTFGVALLAIVVSVGLAQARGHRQVTPRCAEGQQATATCFCGVAIGGQPVLCQKGQWCHGSWLRACTP
Ga0306925_122238541	3300031890	Soil	MLRTFAVALLAIAMSVGLAQAKGPRQRTPVCAEGQPATATCVCGVALSGQPVLCQKGQWCHG
Ga0310916_100258556	3300031942	Soil	MLRTFAVALLAIAMSVGLAQAKMHKHMPGCIVGQPATATCLCGVSFTRQPVLCQKGQWCHWQWRICTP
Ga0310913_103254061	3300031945	Soil	MLRTFAVALLAIAVSVGLAQAKGHKHTIPNCIAGQQATATCHCGVTLTNQPVLCQRGNGV
Ga0306926_102439093	3300031954	Soil	MLKILAVALLAVGMSVGLAQAKGHRQTTPRCFEGQQATATCFCGVAIGGQPVLCQKGQWCHGWW
Ga0306926_105436442	3300031954	Soil	MLKILAVALLAVGMSVGLAQAKGHRQTTPRCVEGLQATATCFCGVAIGGQPVLCQKGQWCHGWWLRACTP
Ga0306922_102850023	3300032001	Soil	MLRDFAVALLAIAMSVGLAQAKGHRQRTPLCAVNQQATATCLCGVALTGQPVLCQKGQWCHGWEMRGMRVCTP
Ga0318558_100704953	3300032044	Soil	MLKTLAVALLAVGMSVGLAQAKGHRQTTPRCTEGQQAPATCFCGVAIGGQPVLCQKGQWCHGWWLRACTP
Ga0318558_106783731	3300032044	Soil	MLRTFAVALLAIAVSVGLAQAKGHKHTIPNCIVGQQATATCHCGVTLTNQPVLCQKGQWCHGQW
Ga0318570_105953471	3300032054	Soil	MLRTFAVALLAIAMSIGLAQAKGPRQRTPLCAEGQPATATCVCGVTLGGQPVLCQKGQWCHGLWMRG
Ga0318504_101417131	3300032063	Soil	MLRTLAVALLAIAVSVGLAQAKGHKHTIPNCIVGQQATATCHCGVTLTNQPVLCQKGQWCHGQWRACTP
Ga0318514_106737141	3300032066	Soil	MLKILAVALLAVGMSVGLAQAKGHRQTTPRCVEGQQATATCFCGVAIGGQPVLCQKGQWCHGWWLRAC
Ga0307472_1006460641	3300032205	Hardwood Forest Soil	MVPTPNLGRNKSMLRIFAVALLAVGMSVGLAQAKGHKHRIAACGEGQQATATCACGIGAGGRPLLCQKGQWCHGWVMRACTP
Ga0306920_1011591603	3300032261	Soil	MLKILAVALLAVGMSVGLAQAKGHRQTTPRCVEAQQATATCFCGVAIGGQPVLCQKGQWCHGWWLRACTP
Ga0310914_101580032	3300033289	Soil	MLRTFAVALLAIAMSVGLAQAKGPRQRTPVCAEGQPATATCVCGVALSGQPVLCQKGQWCHGWPMRGMRVCTP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086454

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences