Basic Information | |
---|---|
Family ID | F086451 |
Family Type | Metagenome |
Number of Sequences | 110 |
Average Sequence Length | 48 residues |
Representative Sequence | VDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRF |
Number of Associated Samples | 63 |
Number of Associated Scaffolds | 110 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 88.00 % |
% of genes near scaffold ends (potentially truncated) | 86.36 % |
% of genes from short scaffolds (< 2000 bps) | 80.91 % |
Associated GOLD sequencing projects | 57 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Bacteria (61.818 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (39.091 % of family members) |
Environment Ontology (ENVO) | Unclassified (70.909 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (59.091 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88 |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 42.86% β-sheet: 0.00% Coil/Unstructured: 57.14% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Vadose Zone Soil Tropical Forest Soil Soil Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0066388_1033608121 | 3300005332 | Tropical Forest Soil | VDSVEGMATREAMSGHHNFRPGQQNKLVSEPPIAAPDEHAQFVEADQRFRAALG |
Ga0066388_1037605863 | 3300005332 | Tropical Forest Soil | MATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRFRAALGQAIAAGG |
Ga0066388_1054558881 | 3300005332 | Tropical Forest Soil | MATLETMSAHHNFRAGQQNKLVSEPPIAAPDEHAQLVEADQRFRAALGQAIAAGGERI |
Ga0070706_1010707561 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | VDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRFRAALGQ |
Ga0066905_1010142921 | 3300005713 | Tropical Forest Soil | VDSAEGMTTLEGMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQR |
Ga0066905_1020584391 | 3300005713 | Tropical Forest Soil | VESAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQL |
Ga0066905_1022158031 | 3300005713 | Tropical Forest Soil | VDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRFRA |
Ga0066905_1022854081 | 3300005713 | Tropical Forest Soil | VDKVDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPD |
Ga0066903_1011515631 | 3300005764 | Tropical Forest Soil | VDTAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQF |
Ga0066903_1012062831 | 3300005764 | Tropical Forest Soil | MATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQL |
Ga0066903_1039121621 | 3300005764 | Tropical Forest Soil | MATLEAMSRHHNFRSGQQNQLVSEPPIAAPDEHAQLVEADQRFQAALDVAIATGAKRGRTNVPR* |
Ga0066903_1048308061 | 3300005764 | Tropical Forest Soil | VDSADGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQFVEA |
Ga0066903_1071644841 | 3300005764 | Tropical Forest Soil | VDSAEGTATLGAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRFR |
Ga0066903_1071649101 | 3300005764 | Tropical Forest Soil | VDSAEGMATLETMSTHHNFRAGQQNKLVSEPPIAAPDEHAQFVEADQRFRAALGQAIAAG |
Ga0066903_1078221261 | 3300005764 | Tropical Forest Soil | MATLEAMSSHHNFRLGQQNKLVSEPPIAAPDEHAQFVEADQRFRAALGQAIAAG |
Ga0066903_1078972892 | 3300005764 | Tropical Forest Soil | MATLEAMSGHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRFRAALG |
Ga0066903_1081038071 | 3300005764 | Tropical Forest Soil | VDSVEGMDTLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQFVEADQ |
Ga0066903_1083088681 | 3300005764 | Tropical Forest Soil | MATFEAMSSHHNFRSGQQNKLVSEPPIAAPDEHARLVEAD |
Ga0066903_1085213382 | 3300005764 | Tropical Forest Soil | MATLEAMSTHHNFRPGQQNKLVSERPIAAPDEHAQLVEADQRFRAALG |
Ga0126374_101587103 | 3300009792 | Tropical Forest Soil | MATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRFRAALGQAIA |
Ga0126374_109479403 | 3300009792 | Tropical Forest Soil | MATLEAMSSHRDFHPEQQSKLVAEPPVAAPDEHAQLLW* |
Ga0126384_115892101 | 3300010046 | Tropical Forest Soil | MATLEAMSSHRNFRPGERNKLVSEPPIAAPDEHAQLVEAD |
Ga0126382_112558241 | 3300010047 | Tropical Forest Soil | MATLEGMSSHHNFRPGQQNKLVSEPPIAAPDDHAHLVEA |
Ga0126382_118182701 | 3300010047 | Tropical Forest Soil | VDSAEGMATLEAMSSRYNFRPGQQNKLVSEPPIAAPDE |
Ga0126370_101850083 | 3300010358 | Tropical Forest Soil | PFPPGADKVDSAEGMATLEAMSSHRDFHPEQQSKLVAEPPVAAPDERAQLLW* |
Ga0126372_106073892 | 3300010360 | Tropical Forest Soil | AGPFPPGADKVDSAEGMATLEAMSSHRDFHPEQQSKLVAEPPVAAPDEHAQLLW* |
Ga0126377_135972141 | 3300010362 | Tropical Forest Soil | SAEGMATLEAMSSHRDFHPEQQSKLVAEPPVAAPDEHAQLLW* |
Ga0126379_116106011 | 3300010366 | Tropical Forest Soil | MATLEVMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQR |
Ga0126383_125671361 | 3300010398 | Tropical Forest Soil | MARLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRF |
Ga0126383_131046341 | 3300010398 | Tropical Forest Soil | LEAMGSRRHDQGNELILEPPIAAPEEHARLVEADQRFQAALGQAIAAGDERHENCHS* |
Ga0137363_115399531 | 3300012202 | Vadose Zone Soil | MSSHHNFRPGQRNKLVSEPPIAAPDEHAQLVEADQRF |
Ga0182036_102270943 | 3300016270 | Soil | VDSADTMATLEAMSSHHNFRPGQQNKLVSEPPIAAPD |
Ga0182036_119118251 | 3300016270 | Soil | VDSAEGMGTLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRFRAA |
Ga0182041_100479035 | 3300016294 | Soil | VDSAEGMATPEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQ |
Ga0182041_103337161 | 3300016294 | Soil | MATLEAMSGHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRFRAALGQ |
Ga0182041_116529091 | 3300016294 | Soil | MSLPPGADKVDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQR |
Ga0182035_100492031 | 3300016341 | Soil | MSLPPGADKVDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQL |
Ga0182032_100853381 | 3300016357 | Soil | VDSAEGMATPEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEA |
Ga0182032_111720511 | 3300016357 | Soil | MATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQFVEADQRFRAAL |
Ga0182034_100920241 | 3300016371 | Soil | VDSAEGMATLEAMSSHHNFRPGQQNKLISEPPIAAPDEHAQFVEADQRFRAALGQ |
Ga0182040_106607851 | 3300016387 | Soil | MATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADRRFRAALGQAIAAGGERIEAGRCN |
Ga0182040_113904412 | 3300016387 | Soil | VDSAEGMGTLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEA |
Ga0182037_105411572 | 3300016404 | Soil | VDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAP |
Ga0182037_119282772 | 3300016404 | Soil | VDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRF |
Ga0182039_104820471 | 3300016422 | Soil | VDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRFRAALGQAIAAGGERIE |
Ga0182038_100477701 | 3300016445 | Soil | VDSAEGMATPEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRFRAAL |
Ga0182038_104594501 | 3300016445 | Soil | MATLEAMSSHHNFRAGQQNKLVSEPPIAAPDEHAQLVEADQRFRAALGQAIAAGGERIEA |
Ga0182038_115932292 | 3300016445 | Soil | MSLPPGADKVDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQFVEADQRFRAALGQAIAAG |
Ga0126371_113777852 | 3300021560 | Tropical Forest Soil | MATLEAMGSRRHDQGNKLILEPPIAAPEEHARLVEADQRFQAALGQAIAAGDERHENCHS |
Ga0318534_105394362 | 3300031544 | Soil | VDSADTMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDDHAHLVEAD |
Ga0318541_100662281 | 3300031545 | Soil | VDSAERMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQFVE |
Ga0318515_101482801 | 3300031572 | Soil | MATLEAMSGHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRFRAA |
Ga0318515_102765732 | 3300031572 | Soil | MATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQR |
Ga0318555_100519434 | 3300031640 | Soil | VDSAEGMATLEAMTSHHNFRPGQQNNLVSEPPIAAPDEHAQLVEADQRFRAALGQAIAAG |
Ga0306917_106887851 | 3300031719 | Soil | VDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRFRAA |
Ga0306917_107713012 | 3300031719 | Soil | RSRQVRTKWTAAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQR |
Ga0306917_108840791 | 3300031719 | Soil | VDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQ |
Ga0318493_101415591 | 3300031723 | Soil | MATLEAMSGHHNFRPGQQNKLVSEPPIAAPDEHAQLVEDDQR |
Ga0306918_100866821 | 3300031744 | Soil | VDSAEGMATPEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRF |
Ga0306918_103233423 | 3300031744 | Soil | MAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLV |
Ga0306918_108272351 | 3300031744 | Soil | MATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQ |
Ga0306918_111044891 | 3300031744 | Soil | MATLEAMSSHHNFRAGQQNKLVSEPPIAAPDEHAHLVEADQRFQAALGQV |
Ga0318492_100897351 | 3300031748 | Soil | MATLEAMSGHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRF |
Ga0318546_110155903 | 3300031771 | Soil | MATLEAMSGHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRFRAALGQAIAAGGERIE |
Ga0318543_101197881 | 3300031777 | Soil | MATLEAMTSHHNFRPGQQNNLVSEPPIAAPDEHAQLVEADQRFRAALGHA |
Ga0318548_105017251 | 3300031793 | Soil | MSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRFRTALGQAFAAGGERIE |
Ga0318576_101048245 | 3300031796 | Soil | VDSTEGMATLEAMSGHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQ |
Ga0318523_106792612 | 3300031798 | Soil | MAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHA |
Ga0318568_102364162 | 3300031819 | Soil | VDSAEGMATLEAMSSHHNFRPGQQNKFVSEPPIAAPDEHAQLVEADQRFRAALGQAIAAG |
Ga0318567_105759952 | 3300031821 | Soil | AEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQR |
Ga0318564_104765291 | 3300031831 | Soil | MATLEAMSGHHNFRPGQQNKLVSEPPIAAPDEHAQLVEA |
Ga0318564_105165531 | 3300031831 | Soil | VDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRFRAAL |
Ga0310917_105946543 | 3300031833 | Soil | MATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRFRAALGQAI |
Ga0306919_100728761 | 3300031879 | Soil | VDSADTMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDD |
Ga0306919_102930611 | 3300031879 | Soil | VDSAEGMATPEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQL |
Ga0306919_103254151 | 3300031879 | Soil | SRQVRTKWTAAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQR |
Ga0306925_117215801 | 3300031890 | Soil | VDSAEGMATLEAISSHHNFRPGQQNKLVSEPPIAAPDEHA |
Ga0318522_101067072 | 3300031894 | Soil | VDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLV |
Ga0318551_100802161 | 3300031896 | Soil | MATLEAMSSHHNFRPGQRNKLVSESPIAAPEEHAP |
Ga0318520_102141762 | 3300031897 | Soil | MATLEAMSSHHNFRPGQQNKLVSEPPIAAPDDHAHLVEADQRFRAALGQAIADECARNRSGTHC |
Ga0318520_107584882 | 3300031897 | Soil | MATLEAMSSHHNFRPGQQNKLVSEPAIAAPDEHAQFVEADQRFRTALG |
Ga0306923_103306263 | 3300031910 | Soil | VDSAERMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQFVEADQR |
Ga0306923_104123432 | 3300031910 | Soil | VDSAEGMATLEAMSSHHNFRQGQQNKLVSEPPIAAPDEHAQLVEADQ |
Ga0306921_1004908111 | 3300031912 | Soil | VDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEQAQLVEADQRFRTALGQAIAAGGE |
Ga0306921_103224703 | 3300031912 | Soil | MAMSSHHNFRPGQRNKLVSEPPIAPPDEHAQLVEADE |
Ga0310912_105032861 | 3300031941 | Soil | VDSAERMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQF |
Ga0310916_112069513 | 3300031942 | Soil | VDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHALLVEADQRFRAALGQAIAAG |
Ga0310916_117412751 | 3300031942 | Soil | VDSAEGMATLEAISSHHNFRPGQQNKLVSEPPIAAPDEHAQFVEA |
Ga0310913_103153211 | 3300031945 | Soil | VDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEQAQLVEADQRFRT |
Ga0310913_109845361 | 3300031945 | Soil | VDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQFVEADQRFRAALGQAIAAGALSASRRSRP |
Ga0310913_111346462 | 3300031945 | Soil | VDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQFVEADQRFRAALGQAIAAGGERI |
Ga0310909_104548412 | 3300031947 | Soil | VDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEH |
Ga0310909_105076681 | 3300031947 | Soil | VDGAERLATLEAMSSHHSFRTGHQNKLVSEPPIAAPDDHAQLVEADRRFQA |
Ga0318569_102275791 | 3300032010 | Soil | VDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRFR |
Ga0310911_100398524 | 3300032035 | Soil | VDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQ |
Ga0318549_100321791 | 3300032041 | Soil | VDSAEGMATLEAMTSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEAD |
Ga0318545_100552193 | 3300032042 | Soil | MATLEAMSGHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQ |
Ga0318533_102603792 | 3300032059 | Soil | VDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRFRAALGQA |
Ga0318504_100861251 | 3300032063 | Soil | MSSHHNFRPGQQNKLVSEPPIAAPDEHAQLIGFDQL |
Ga0318513_100386984 | 3300032065 | Soil | VDSAEGMATLEAMTSHHNFRPGQQNNLVSEPPIAAPDEHAQLVEADQRFRAALGHAIAAG |
Ga0306924_102540744 | 3300032076 | Soil | MSLPPGADKVDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPD |
Ga0306924_116200762 | 3300032076 | Soil | VDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAADEH |
Ga0306924_125656342 | 3300032076 | Soil | VDSAEGMATLEAMSSHHNFRPGQQNKLISEPPIAAPDEHAQFVEADQRFRAALG |
Ga0318577_1001211311 | 3300032091 | Soil | MATLEAMSGHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRFQAALGQA |
Ga0318540_102381494 | 3300032094 | Soil | MATLEAMSGHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRFRAALGQAIAAGGER |
Ga0310914_102853001 | 3300033289 | Soil | MATLEAMSSHHNFRQGQQNKLVSEPPIAAPDEHAQ |
Ga0310914_105101783 | 3300033289 | Soil | VDSAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHALLVEA |
Ga0310914_105606792 | 3300033289 | Soil | QVRTKWTAAEGMATLEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQR |
Ga0310914_118978271 | 3300033289 | Soil | MATLEAMSSHHNFRAGQQNKLVSEPPIAAPDEHAHLVEADQRFRAALGQAIAAG |
Ga0318519_100783273 | 3300033290 | Soil | VDSAEGMATPEAMSSHHNFRPGQQNKLVSEPPIAAPDEHAQLVEADQRFQAALGQAIAA |
⦗Top⦘ |