Metagenome / Metatranscriptome Family F086438

Overview

Basic Information

• Family ID: F086438
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 110
• Average Sequence Length: 45 residues
• Representative Sequence: VTKYKLVIPIKGIMILVFWEKSFKSMEADYSNHLASPLVASCGEI
• Number of Associated Samples: 68
• Number of Associated Scaffolds: 110

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 7.14 %
• % of genes near scaffold ends (potentially truncated): 12.73 %
• % of genes from short scaffolds (< 2000 bps): 12.73 %
• Associated GOLD sequencing projects: 68
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (99.091 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere (71.818 % of family members)
• Environment Ontology (ENVO): Unclassified (94.545 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant surface (90.000 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 23.29%
  β-sheet: 24.66%
  Coil/Unstructured: 52.05%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF04195	Transposase_28	2.73

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
All Organisms	root	All Organisms	0.91 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
cellular organisms	root	All Organisms → cellular organisms	0.91 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.91 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	0.91 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	0.91 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	0.91 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.91 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	0.91 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	0.91 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	0.91 %

Level 11

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	0.91 %

Level 12

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	0.91 %

Level 13

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
Liliopsida	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida	0.91 %

Level 14

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
Petrosaviidae	subclass	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae	0.91 %

Level 15

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
commelinids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids	0.91 %

Level 16

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
Poales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales	0.91 %

Level 17

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
Poaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	0.91 %

Level 18

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
PACMAD clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade	0.91 %

Level 19

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
Panicoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae	0.91 %

Level 20

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
Panicodae	no rank	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae	0.91 %

Level 21

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
Paniceae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae	0.91 %

Level 22

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
Panicinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae	0.91 %

Level 23

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
Panicum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	0.91 %

Level 24

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
Panicum sect. Hiantes	section	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes	0.91 %

Level 25

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.09 %
Panicum virgatum	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	0.91 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300005618|Ga0068864_102179448	Not Available	561
3300009992|Ga0105120_1023713	Not Available	692
3300015315|Ga0182120_1089961	Not Available	597
3300015328|Ga0182153_1135851	Not Available	527
3300015331|Ga0182131_1081609	Not Available	651
3300015332|Ga0182117_1166179	Not Available	507
3300015348|Ga0182115_1104642	Not Available	891
3300015349|Ga0182185_1234407	Not Available	558
3300015354|Ga0182167_1073773	Not Available	1217
3300015354|Ga0182167_1119741	Not Available	969
3300028050|Ga0268328_1017369	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	817
3300028053|Ga0268346_1039194	Not Available	524
3300028154|Ga0268341_1029134	Not Available	518
3300028526|Ga0268339_1019291	Not Available	518

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	96.36%
Environmental	Environmental	2.73%
Engineered	Engineered	0.91%

Class

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	96.36%
Terrestrial	Environmental → Terrestrial	2.73%
Bioreactor	Engineered → Bioreactor	0.91%

Category

Habitat	Taxonomy	Distribution
Phyllosphere	Host-Associated → Plants → Phyllosphere	85.45%
Unclassified	Host-Associated → Plants → Unclassified	8.18%
Soil	Environmental → Terrestrial → Soil	2.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.91%
Unclassified	Engineered → Bioreactor → Unclassified	0.91%

Type

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified	85.45%
Unclassified	Host-Associated → Plants → Unclassified → Unclassified	8.18%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	2.73%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.91%
Unclassified	Engineered → Bioreactor → Unclassified → Unclassified	0.91%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified	85.45%
Unclassified	Host-Associated → Plants → Unclassified → Unclassified → Unclassified	8.18%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	2.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.91%
Unclassified	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified	0.91%

Habitat

Habitat	Taxonomy	Distribution
Switchgrass Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere	71.82%
Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere	13.64%
Switchgrass Associated	Host-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated	8.18%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Degrading	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading	0.91%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated
3300009972	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_224 metaG	Host-Associated
3300009975	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_187 metaG	Host-Associated
3300009976	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_186 metaG	Host-Associated
3300009981	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_208 metaG	Host-Associated
3300009990	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_206 metaG	Host-Associated
3300009992	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_108 metaG	Host-Associated
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental
3300012949	Switchgrass enrichment cultures co-assembly	Engineered
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated
3300015270	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_22AUG2016_LD1 MG	Host-Associated
3300015284	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_09MAY2016_LD1 MG	Host-Associated
3300015293	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_09MAY2016_LD1 MG	Host-Associated
3300015297	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_09MAY2016_LD1 MG	Host-Associated
3300015301	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_22AUG2016_LD1 MG	Host-Associated
3300015306	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_22AUG2016_LD1 MG	Host-Associated
3300015309	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_09MAY2016_LD1 MG	Host-Associated
3300015310	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_01AUG2016_LD1 MG	Host-Associated
3300015311	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_22AUG2016_LD1 MG	Host-Associated
3300015313	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_01AUG2016_LD1 MG	Host-Associated
3300015315	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_31MAY2016_LD1 MG	Host-Associated
3300015316	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_31MAY2016_LD1 MG	Host-Associated
3300015317	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_20JUN2016_LD1 MG	Host-Associated
3300015319	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_20JUN2016_LD1 MG	Host-Associated
3300015324	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_20JUN2016_LD1 MG	Host-Associated
3300015325	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12JUL2016_LD1 MG	Host-Associated
3300015328	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12JUL2016_LD1 MG	Host-Associated
3300015329	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_20JUN2016_LD1 MG	Host-Associated
3300015330	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12JUL2016_LD1 MG	Host-Associated
3300015331	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_20JUN2016_LD1 MG	Host-Associated
3300015332	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_31MAY2016_LD1 MG	Host-Associated
3300015334	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_20JUN2016_LD1 MG	Host-Associated
3300015335	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_31MAY2016_LD1 MG	Host-Associated
3300015336	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MG	Host-Associated
3300015337	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12JUL2016_LD1 MG	Host-Associated
3300015340	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_20JUN2016_LD1 MG	Host-Associated
3300015348	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MG	Host-Associated
3300015349	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MG	Host-Associated
3300015350	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_01AUG2016_LD1 MG	Host-Associated
3300015352	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MG	Host-Associated
3300015353	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MG	Host-Associated
3300015354	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MG	Host-Associated
3300017412	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12SEP2016_LD1 MG	Host-Associated
3300017414	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12SEP2016_LD1 MG	Host-Associated
3300017435	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_12SEP2016_LD1 MG	Host-Associated
3300017440	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_03OCT2016_LD1 MG	Host-Associated
3300017447	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_03OCT2016_LD1 MG	Host-Associated
3300017692	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_03OCT2016_LD1 MG	Host-Associated
3300017693	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_03OCT2016_LD1 MG	Host-Associated
3300020223	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_31MAY2016_LD2 MG	Host-Associated
3300028050	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_17JUL2017_LD1	Host-Associated
3300028053	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_28AUG2017_LD1	Host-Associated
3300028058	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_07AUG2017_LD1	Host-Associated
3300028063	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_18SEP2017_LD1	Host-Associated
3300028064	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_28AUG2017_LD1	Host-Associated
3300028143	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_18SEP2017_LD1	Host-Associated
3300028150	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_28AUG2017_LD1	Host-Associated
3300028154	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_28AUG2017_LD1	Host-Associated
3300028262	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_05JUN2017_LD1	Host-Associated
3300028472	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_05JUN2017_LD1	Host-Associated
3300028526	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_07AUG2017_LD1	Host-Associated
3300028527	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_07AUG2017_LD1	Host-Associated
3300032464	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)	Host-Associated
3300032502	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)	Host-Associated
3300032625	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070667_1009892291	3300005367	Switchgrass Rhizosphere	QSINLLFPSKGIMILVSWEKSFKNLEADYNNHLASPLVASCREISLSP*
Ga0068864_1021794482	3300005618	Switchgrass Rhizosphere	IPISGIKIFVFREISYKSMEADYSNHLASPLVASCREISLSP*
Ga0105137_1085761	3300009972	Switchgrass Associated	LVIPIRGIMILVFWEKSFKSIEADYSNHLASPLVASCGKISLSP*
Ga0105129_1072731	3300009975	Switchgrass Associated	VTKYKLVIPIKGIMILVFWEKSFKGMDADYSNHLASSLLASFAGKDYTNFR
Ga0105128_1055512	3300009976	Switchgrass Associated	MTKYKLVIPIKGIMILVFGEKNFKSLEADYSNRLARSLVASYKEISSSP*
Ga0105128_1108472	3300009976	Switchgrass Associated	MIKYKLVIPIKGIMILVFWEKSFKSKEADYSKHLASPLLAS*
Ga0105128_1108792	3300009976	Switchgrass Associated	IKGIMILVFWEESFKSSEADYSNHLASPLVASCGEISPSP*
Ga0105133_1043102	3300009981	Switchgrass Associated	MTKYKLVIPIKGIMIHVLWEESFKSLEADYSNHLASPLV
Ga0105132_1034712	3300009990	Switchgrass Associated	PMTKYKLVIPIEGIMILVFWEKSFKSLEADYSNHLASPLVASSGETSPSPRIRL*
Ga0105132_1377031	3300009990	Switchgrass Associated	DRPEAVTKYKLVIPTKGIMILLFWEKNFKSKEAYYSNRLARSLVASCKGISPSP*
Ga0105120_10237132	3300009992	Switchgrass Associated	PEAVTKYKLIILIKGIMILVLWEKNFKSMEADYSNRLASPLIASCGEISPSL*
Ga0134125_117345622	3300010371	Terrestrial Soil	MTKYKLVIPIKGIMILIFWEKSFKSLEADYSNRLARSLVASCGEIS
Ga0134127_124139981	3300010399	Terrestrial Soil	VTKNKLVIPIKGIMILVFWEKSFKSMEADYSNHLASPLVASSGET
Ga0134122_119322171	3300010400	Terrestrial Soil	MTKYKLVIPTKGIIILVFWEKSFKSLEADYSNCLARSLVAS
Ga0153798_102940091	3300012949	Switchgrass Degrading	VTKYKLVISIKGIMIHVSWEKIFKSMEADYNNHLASPLVASSGETS
Ga0157380_128206921	3300014326	Switchgrass Rhizosphere	TKYKLIIPVKGIMILVFWEKSFKRLEADYSNRLARSLVASCRRISHSP*
Ga0182183_10296291	3300015270	Switchgrass Phyllosphere	IKGIMILIFWEKSFKSLEADYSNRLARSLVASCGEISPSP*
Ga0182183_10535831	3300015270	Switchgrass Phyllosphere	VTRYKLVIPIKGIMILGFWEKIFKSMEADYSNHLANP
Ga0182101_10293472	3300015284	Switchgrass Phyllosphere	VTKYKLVIPIKGIMIPILWEKDFKSLEADYSNHLARSLVASCGEISPSP*
Ga0182103_10439181	3300015293	Switchgrass Phyllosphere	VTKYKLVIPIKGIMILVLWEKSFKSMEVDYSNHLASPLVASSGETSPS
Ga0182104_10883231	3300015297	Switchgrass Phyllosphere	VTKYKLVILIKGIMILVFWEKSFKSMKADYSNHLTSTLVASSGETSPS
Ga0182184_10811281	3300015301	Switchgrass Phyllosphere	GIMILIFWEKSFKSLEADYSNHLARSLVASCGEISPSP*
Ga0182180_10568182	3300015306	Switchgrass Phyllosphere	VTKYKIVIPTKGIMIFVFWEKSFKSKEVDYSKHIARSLVASYKGIS
Ga0182098_10789261	3300015309	Switchgrass Phyllosphere	RPEAITKYKHVIPIKGIMILIFWEKSFKSLEADYSNRLARSLVAFCGEISPSP*
Ga0182162_10827191	3300015310	Switchgrass Phyllosphere	ISGIKIFVFREISYKSMEADYSNHLASLLVASCREISPSP*
Ga0182182_10743421	3300015311	Switchgrass Phyllosphere	KLVIPISGIKIFVFWEISYKSMEPDYSNHLANPLVASCR*
Ga0182164_10441382	3300015313	Switchgrass Phyllosphere	RPEAITKYKHVIPIKGIMILIFWEKSFKSLEADYSNRLARSLVASCGEISPSP*
Ga0182164_11231381	3300015313	Switchgrass Phyllosphere	TKYKLVIPMKEIMILVFWEKGFKSKEADYSNRLARSLVASCKGISPSP*
Ga0182164_11251121	3300015313	Switchgrass Phyllosphere	VTKYKLVIPIKGIMILVFWEKSFKSMEADYSNHLASPLVAS
Ga0182120_10411361	3300015315	Switchgrass Phyllosphere	MIKYKLLIPIKGIMILVLWEKSFKSLEADYNNRLARSL
Ga0182120_10899611	3300015315	Switchgrass Phyllosphere	MTKYKLIIPIKGIMILVFWEKSFKSLEADYSNRLARSLLESCKGISPSP*
Ga0182121_10517272	3300015316	Switchgrass Phyllosphere	GLRPLQSSKLIIPTKEIMIVVFWEKSFKSKEADYSKCLASPLLAS*
Ga0182136_10697431	3300015317	Switchgrass Phyllosphere	VTKYKLVISIKGIMILVFWEKSFKSMEADYSNHLASPLISSCREISP
Ga0182136_10717611	3300015317	Switchgrass Phyllosphere	MTKYKHVIPTKGIMILILWEESFKSFEADYSNHLASPLIASCGEISP
Ga0182136_11310662	3300015317	Switchgrass Phyllosphere	YKLVIPIRGIMILVFWEKDFKRLEADYSNHLARSLVASCREISPSP*
Ga0182130_11340701	3300015319	Switchgrass Phyllosphere	VTKDKLVIPIERIMILVFWEKSSNSKEADYSKRLSTP
Ga0182134_10437631	3300015324	Switchgrass Phyllosphere	MTKYKLVIPIKRIMILIFWEKKFKSLEVDYSNRLARSLVASYREVSPSP*
Ga0182148_11473591	3300015325	Switchgrass Phyllosphere	MYKLVIPTKGIMILIFWEKSARSKEADYSKRLVRPLL
Ga0182153_11358512	3300015328	Switchgrass Phyllosphere	TKYKLVIPTKGIMILVFWEKSFKSKEAYYSNHLARSLVASCIEISPSL*
Ga0182135_10497741	3300015329	Switchgrass Phyllosphere	VTKYKLDIPIKGIMILIFWEKSFKSMEVDYSNRLASPLVAS
Ga0182152_10211131	3300015330	Switchgrass Phyllosphere	KLVIPTKGIMIFISWDKSFKSKEADYSKCLASPLLAS*
Ga0182152_10561121	3300015330	Switchgrass Phyllosphere	MIKYKLFIPIKGIMILVFWEESFKSMEADYSNRPVSPLV
Ga0182152_10721542	3300015330	Switchgrass Phyllosphere	MTKYKLVIPTKGIMILVFWEKSFKSMEADYSNHLASSLVASSGETSPSSRI*
Ga0182152_10951301	3300015330	Switchgrass Phyllosphere	LDRPEAVTKYKLVIPIKGIMLLIFWEKSFKSMEADYSNHLA
Ga0182152_11422181	3300015330	Switchgrass Phyllosphere	VTKYKLVISIQGIMILVFWEKSFKSMEADYSNHLASPL
Ga0182131_10816091	3300015331	Switchgrass Phyllosphere	KLVIPTKGIMILIFWEKSFKSKEANYSNRLARSLVASCIGISPSL*
Ga0182131_11155801	3300015331	Switchgrass Phyllosphere	LVIPIKGIMILVFWEKSFKSLEVDYSNRLARSLVASCGEISPSP*
Ga0182131_11244921	3300015331	Switchgrass Phyllosphere	YKLVIPIKGIMILIFWEKSFKSKETDYSNRLARSIVASCKRISPSP*
Ga0182117_11661791	3300015332	Switchgrass Phyllosphere	KLVIPIKGIMILVFWEKSFKSLEADYSNHLASSLVASYGEISPSP*
Ga0182132_10164301	3300015334	Switchgrass Phyllosphere	VTKYKLVIPIKGIMIPILWEKDFKSLEADYSNHLARSLVASCGEI
Ga0182132_10603991	3300015334	Switchgrass Phyllosphere	AMTKYKLVIPTKGIMILVFWEKSFKSLEAYYSNHLTRSLVASCKGISPSP*
Ga0182132_11067221	3300015334	Switchgrass Phyllosphere	MSKYKLVIPTKGIMILVLWEKSFKSLEADYSNHLASPLVASCGEIS
Ga0182116_10594851	3300015335	Switchgrass Phyllosphere	KYKLVIPIKGIMILVFWEKSFKSLEADYSNRLARSLVASCREISPSP*
Ga0182116_10667691	3300015335	Switchgrass Phyllosphere	YKASKLVIPRLGTTIFVLWEKSFKSKQADYSTRLASPLLAA*
Ga0182116_11460011	3300015335	Switchgrass Phyllosphere	IPIKGIMILVFWEKSFKSLEADYSNRLARSLVASCGEISPSP*
Ga0182150_11441671	3300015336	Switchgrass Phyllosphere	VTKYKLVIPTKGIKILVLWEKTLKSMKADYSNRLASPLVAPRI
Ga0182151_10639161	3300015337	Switchgrass Phyllosphere	QLDRPEAVTKYKHVIPIKGIMILVFWEKSFKSKEADYSNCLARSLVASCKGISPSP*
Ga0182151_11217431	3300015337	Switchgrass Phyllosphere	MTKYKLVIPIKGIMILVFLEKSFRSLEADYSNHLASP
Ga0182133_10859701	3300015340	Switchgrass Phyllosphere	MIEYKLVIPIKGIMILVFWEKSLKSLETDYSNHLARSVVASCGEIS
Ga0182133_11201811	3300015340	Switchgrass Phyllosphere	MTKYKLAIPIKGIMILVFWEKSFNSLDVDYSNHLERSLVAS
Ga0182115_11046421	3300015348	Switchgrass Phyllosphere	AMTKYKLVIPIKGIMILIFWEKSFKSLEEDYSNRLARSLVASCGEISPSPLIHCDKIKSPY*
Ga0182115_11852491	3300015348	Switchgrass Phyllosphere	KYKLVIPIKGIMILIFWEKSFKSKETDYSNRLARSIVASCKRISPSP*
Ga0182185_11095791	3300015349	Switchgrass Phyllosphere	KYKFVIPTKGVKILAFWEKSFKSKEVDYSKHIARSLVASYKGISPSP*
Ga0182185_11905812	3300015349	Switchgrass Phyllosphere	KLIIPIKGIMILVFWEKSFKSKEADYSKCLASPLLAS*
Ga0182185_12344071	3300015349	Switchgrass Phyllosphere	MIKYKLVIPIKGIMIFVFWEKSFKSLEADYSNHLASSLVASCGEISPSPRIRCDKIKSPT
Ga0182185_12707772	3300015349	Switchgrass Phyllosphere	IPIKGIMILVFWEKSFKSLEADYSSHLARSLVASCGEISPSP*
Ga0182163_11742522	3300015350	Switchgrass Phyllosphere	MTKYKLVIPIKGIIIFVFWEKRFKSLEADYSNCLARSLVASCGEISPSP*
Ga0182169_11665881	3300015352	Switchgrass Phyllosphere	IPIKGIMILVFWEKSFKSLEADYSNHLVSPLVASCGEISPSL*
Ga0182169_12266831	3300015352	Switchgrass Phyllosphere	RPEAVTKYKLVIPIKGIMITIFWEKSFKSLDADYSNRLARSRIASYGEISSQDATRGLAR
Ga0182169_12325141	3300015352	Switchgrass Phyllosphere	RLKAMTKYKLVIPTKGIMILVFWEKSFKSLEAYYSNHLTRSLVASCKGISPSP*
Ga0182169_12397841	3300015352	Switchgrass Phyllosphere	PEAVTKYKLVIPIKGIMILVFWEKSFKSLEADYTNHLSSPLVASFGEIFPSP*
Ga0182169_13017171	3300015352	Switchgrass Phyllosphere	VTKYKLVIPIKGIMILVSWEKSFKSMEADYSNHLASTLVASSGETSPSP
Ga0182179_10588641	3300015353	Switchgrass Phyllosphere	VTKYKLVIPTKEIMILILWEKSFKSMEADYSNHLASPFVASS
Ga0182179_11663271	3300015353	Switchgrass Phyllosphere	MTKYKLVIPIKGIMILVFWEKSFKSMEADYSNHLASP
Ga0182179_13047351	3300015353	Switchgrass Phyllosphere	MTKYKFVIPTKGIMILVLWEESFKSLEADYSNHLAS
Ga0182167_10737731	3300015354	Switchgrass Phyllosphere	PEAVTKYKLVIPIKGIMILVFWEKSFKIKEADYSNRLARSLVASCKVISPSP*
Ga0182167_11197412	3300015354	Switchgrass Phyllosphere	TKYKLVIPIKGIMILVFWEKRFKSLEVGYSNRLARSLVASCIEISPSL*
Ga0182167_11658641	3300015354	Switchgrass Phyllosphere	MSKYKLIIPISGIKIFIFREISYKSMEADYNNHLASPL
Ga0182167_13485091	3300015354	Switchgrass Phyllosphere	MTKYKLVIPTKGIMIHVSWEKSYRNMKADYSNHLASTLVASSGET
Ga0182167_13554581	3300015354	Switchgrass Phyllosphere	MTKYKLVIPTKGIMILVLWEESFKSLEADYSNHLASPLVASCGEISPSP
Ga0182199_11023141	3300017412	Switchgrass Phyllosphere	VTKYKLVISIKGIMITIFWEKSFKSLEADYSNRLARSLVASCGEIS
Ga0182199_11692711	3300017412	Switchgrass Phyllosphere	KGIMILIFWEKSFKSLEADYSNRLARSLVASCGEISPSP
Ga0182195_11738601	3300017414	Switchgrass Phyllosphere	MTKYKLVIPTKGIMILVLWEESFKSLEADYSNHLASPLV
Ga0182194_10884922	3300017435	Switchgrass Phyllosphere	MTKYKLVIPTKGIMILVFWEKSFKSMEADYSNHLASSLVASSGETSPSSRI
Ga0182214_11141862	3300017440	Switchgrass Phyllosphere	MQLDQPEVVTKYKLVIPIKGIMILVFWEKRFKSLEADYSNRLARSL
Ga0182215_11110871	3300017447	Switchgrass Phyllosphere	VTKYKLVIPIKGIMILAFCEKSFKSMEADYSNCLASPLVA
Ga0182210_11000141	3300017692	Switchgrass Phyllosphere	MTKYKLIIPTKGTMILVLWEESFKSLEEDYSNHLAS
Ga0182216_10493442	3300017693	Switchgrass Phyllosphere	AVTKYKLVIPTKGIMIFVFWEKSFNSKEADYSNRLARSLL
Ga0182216_10524371	3300017693	Switchgrass Phyllosphere	AVTKYKIVIPTKGIMIFVFWEKSFKSKEVDYSNHIARSLVASYKGISPSP
Ga0182216_10778092	3300017693	Switchgrass Phyllosphere	MTKYKFVIPTKGIMILVFWEKSLKSMEADYSNHLASPLVASS
Ga0182118_1032591	3300020223	Switchgrass Phyllosphere	VTKYKLVIPIKGIMILVFWEKSFKSMEADYSNHLASPLVASCGEI
Ga0268328_10173693	3300028050	Phyllosphere	QRLLQLDRPEAITKYKHVIPIKGIMILVFWEESFKSLETDYSNRLARSLVASYGEISPSP
Ga0268328_10245121	3300028050	Phyllosphere	VIKYKLVIPIKGIMILVLWEKIFKSMEADYSNHLASPLVASSG
Ga0268328_10301862	3300028050	Phyllosphere	SGIKIFVFRKISYKSMEANYSNHLASPLVASCREISLSP
Ga0268346_10391942	3300028053	Phyllosphere	VIPISGIKVFVFREISYKSMEADYSNHLASPLVASCREISPSP
Ga0268332_10192011	3300028058	Phyllosphere	MTKYKLVIPISGIKIFVFREISYKSMEADYSNHLASPLVASC
Ga0268350_10491721	3300028063	Phyllosphere	MTKYKLVIPTKGIMILVLWEKSFKSMEADYSNHLASPL
Ga0268340_10685041	3300028064	Phyllosphere	MTKYKLVIPTKGIMILVPWEKSFKSMEADYSNLLASCNTLI
Ga0268348_10098742	3300028143	Phyllosphere	IKGIKIFVFREISYKSMEADYSNHLASPLVASCREISLSP
Ga0268343_10133401	3300028150	Phyllosphere	AVTKYKLVIPIKGIMILVFWEKDFKRLEADYSNHLARSLVAS
Ga0268341_10291341	3300028154	Phyllosphere	IPISGIKIFIFREISYKSMEADYSNHLASPLVASCREISLSP
Ga0268310_10392311	3300028262	Phyllosphere	VIKYKLFIPISGIKIFVFWEISYKSMEADYSNHLTSPLVASCREIS
Ga0268315_10149951	3300028472	Phyllosphere	MTKYKLVIPIKGIIIFVFWEKRFKSLEADYSNCLARS
Ga0268339_10192912	3300028526	Phyllosphere	DRPEAITKYKHVIPIKGIMILIFWEKSFKSLEADYSNRLARSLVASCGEISPSP
Ga0268335_10047872	3300028527	Phyllosphere	QLDRLEAMTKYKLVIPIKGIMILVFWEKSFKSLEVDYSNHLARSLVASCGEISPSP
Ga0268335_10098421	3300028527	Phyllosphere	GIKIFVFREISYKSMEADYSNHLASPLVASCREISPSP
Ga0214492_10947231	3300032464	Switchgrass Phyllosphere	MTKYKLVIPIKGIMILVLWEKSFKSMEADYSNRLASPLVASSGETS
Ga0214490_10483781	3300032502	Switchgrass Phyllosphere	EAVAKYKFVIPIKRIIILVFREKSFKSLEADYSNCLARSLVASCGEISPSP
Ga0214490_11098501	3300032502	Switchgrass Phyllosphere	MTKYKLVIPIKGIMILVFWKKSFKSLEADYSNHLASPLVASCGEIS
Ga0214501_11663112	3300032625	Switchgrass Phyllosphere	IIPISGIMIFVFREISYKSMEADYSNHLANPLVASCREISLSP