Metagenome Family F086348

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F086348
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	44 residues
Representative Sequence	AGVPFMAIIARGEHGYRQRAARFRELGALALLPRVTGLFRILS
Number of Associated Samples	94
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.90 %
% of genes near scaffold ends (potentially truncated)	98.20 %
% of genes from short scaffolds (< 2000 bps)	89.19 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (84.685 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (33.333 % of family members)
Environment Ontology (ENVO)	Unclassified (35.135 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.946 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.62% β-sheet: 0.00% Coil/Unstructured: 63.38%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF03747	ADP_ribosyl_GH	38.74
PF00430	ATP-synt_B	10.81
PF08450	SGL	5.41
PF03462	PCRF	1.80
PF13426	PAS_9	1.80
PF00213	OSCP	1.80
PF05227	CHASE3	1.80
PF02874	ATP-synt_ab_N	0.90
PF16694	Cytochrome_P460	0.90
PF07690	MFS_1	0.90
PF12697	Abhydrolase_6	0.90
PF13683	rve_3	0.90
PF00679	EFG_C	0.90
PF14534	DUF4440	0.90
PF13899	Thioredoxin_7	0.90
PF03764	EFG_IV	0.90
PF02311	AraC_binding	0.90
PF13579	Glyco_trans_4_4	0.90
PF03320	FBPase_glpX	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG1397	ADP-ribosylglycohydrolase	Posttranslational modification, protein turnover, chaperones [O]	38.74
COG0711	FoF1-type ATP synthase, membrane subunit b or b'	Energy production and conversion [C]	10.81
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	5.41
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	5.41
COG0216	Protein chain release factor RF1	Translation, ribosomal structure and biogenesis [J]	1.80
COG0712	FoF1-type ATP synthase, delta subunit	Energy production and conversion [C]	1.80
COG1186	Protein chain release factor PrfB	Translation, ribosomal structure and biogenesis [J]	1.80
COG0480	Translation elongation factor EF-G, a GTPase	Translation, ribosomal structure and biogenesis [J]	0.90
COG1494	Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase or related protein	Carbohydrate transport and metabolism [G]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.68 %
Unclassified	root	N/A	15.32 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.68 %
Unclassified	root	N/A	15.32 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.68 %
Unclassified	root	N/A	15.32 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	52.25 %
Unclassified	root	N/A	15.32 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.31 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	18.92 %
Unclassified	root	N/A	15.32 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.70 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.92 %
Unclassified	root	N/A	15.32 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	1.80 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.80 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.92 %
Unclassified	root	N/A	15.32 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	1.80 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.80 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.92 %
Unclassified	root	N/A	15.32 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1.80 %
Rhodomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	1.80 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.90 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352024\|deeps_contig44597.27974	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1611	Open in IMG/M
3300001167\|JGI12673J13574_1009246	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300001369\|JGI12701J14581_1009211	Not Available	664	Open in IMG/M
3300001593\|JGI12635J15846_10051833	All Organisms → cellular organisms → Bacteria → Acidobacteria	3124	Open in IMG/M
3300001593\|JGI12635J15846_10358944	Not Available	891	Open in IMG/M
3300001661\|JGI12053J15887_10000576	All Organisms → cellular organisms → Bacteria → Acidobacteria	15264	Open in IMG/M
3300002245\|JGIcombinedJ26739_101560232	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300005174\|Ga0066680_10898013	All Organisms → cellular organisms → Bacteria → Acidobacteria	526	Open in IMG/M
3300005176\|Ga0066679_10186321	Not Available	1317	Open in IMG/M
3300005177\|Ga0066690_10112700	All Organisms → cellular organisms → Bacteria	1759	Open in IMG/M
3300005184\|Ga0066671_10054628	All Organisms → cellular organisms → Bacteria → Proteobacteria	2038	Open in IMG/M
3300005332\|Ga0066388_102473398	Not Available	943	Open in IMG/M
3300005451\|Ga0066681_10597339	Not Available	680	Open in IMG/M
3300005555\|Ga0066692_10443704	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	826	Open in IMG/M
3300005557\|Ga0066704_10928856	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300005764\|Ga0066903_101322413	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300006041\|Ga0075023_100417554	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300006046\|Ga0066652_100935264	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	826	Open in IMG/M
3300006050\|Ga0075028_100738400	All Organisms → cellular organisms → Bacteria → Acidobacteria	595	Open in IMG/M
3300006173\|Ga0070716_101741426	All Organisms → cellular organisms → Bacteria → Acidobacteria	515	Open in IMG/M
3300006755\|Ga0079222_10382039	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300006796\|Ga0066665_10982685	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	649	Open in IMG/M
3300006797\|Ga0066659_10206554	Not Available	1441	Open in IMG/M
3300006893\|Ga0073928_10199351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	1569	Open in IMG/M
3300006893\|Ga0073928_11243247	Not Available	500	Open in IMG/M
3300007258\|Ga0099793_10006044	All Organisms → cellular organisms → Bacteria	4428	Open in IMG/M
3300009088\|Ga0099830_10598903	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	904	Open in IMG/M
3300009088\|Ga0099830_11088583	All Organisms → cellular organisms → Bacteria → Acidobacteria	663	Open in IMG/M
3300009089\|Ga0099828_10250811	All Organisms → cellular organisms → Bacteria	1587	Open in IMG/M
3300009089\|Ga0099828_11423894	All Organisms → cellular organisms → Bacteria → Proteobacteria	612	Open in IMG/M
3300009090\|Ga0099827_10419764	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300009090\|Ga0099827_11474593	All Organisms → cellular organisms → Bacteria → Acidobacteria	592	Open in IMG/M
3300009176\|Ga0105242_10843723	All Organisms → cellular organisms → Bacteria → Acidobacteria	911	Open in IMG/M
3300009635\|Ga0116117_1063909	All Organisms → cellular organisms → Bacteria → Acidobacteria	908	Open in IMG/M
3300010048\|Ga0126373_10621055	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1135	Open in IMG/M
3300010048\|Ga0126373_10822329	All Organisms → cellular organisms → Bacteria → Acidobacteria	991	Open in IMG/M
3300010048\|Ga0126373_12557794	Not Available	569	Open in IMG/M
3300010337\|Ga0134062_10156046	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300010358\|Ga0126370_12227151	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300010361\|Ga0126378_12868932	Not Available	550	Open in IMG/M
3300011269\|Ga0137392_10893359	All Organisms → cellular organisms → Bacteria → Acidobacteria	732	Open in IMG/M
3300011271\|Ga0137393_10039866	All Organisms → cellular organisms → Bacteria	3616	Open in IMG/M
3300012096\|Ga0137389_10206409	All Organisms → cellular organisms → Bacteria	1638	Open in IMG/M
3300012198\|Ga0137364_11428631	All Organisms → cellular organisms → Bacteria → Proteobacteria	511	Open in IMG/M
3300012199\|Ga0137383_10102878	All Organisms → cellular organisms → Bacteria → Acidobacteria	2075	Open in IMG/M
3300012200\|Ga0137382_11298402	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300012202\|Ga0137363_10036953	All Organisms → cellular organisms → Bacteria → Acidobacteria	3417	Open in IMG/M
3300012202\|Ga0137363_11257947	All Organisms → cellular organisms → Bacteria → Acidobacteria	628	Open in IMG/M
3300012205\|Ga0137362_11254516	All Organisms → cellular organisms → Bacteria → Acidobacteria	626	Open in IMG/M
3300012206\|Ga0137380_10163805	All Organisms → cellular organisms → Bacteria	2026	Open in IMG/M
3300012206\|Ga0137380_10254648	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1582	Open in IMG/M
3300012208\|Ga0137376_10504471	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1049	Open in IMG/M
3300012208\|Ga0137376_10633054	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	924	Open in IMG/M
3300012209\|Ga0137379_11547771	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	563	Open in IMG/M
3300012351\|Ga0137386_10169018	All Organisms → cellular organisms → Bacteria	1567	Open in IMG/M
3300012351\|Ga0137386_10562567	Not Available	821	Open in IMG/M
3300012357\|Ga0137384_11129479	All Organisms → cellular organisms → Bacteria → Acidobacteria	626	Open in IMG/M
3300012359\|Ga0137385_11331693	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	581	Open in IMG/M
3300012363\|Ga0137390_10554718	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1119	Open in IMG/M
3300012582\|Ga0137358_10178589	All Organisms → cellular organisms → Bacteria	1448	Open in IMG/M
3300012918\|Ga0137396_11290391	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300012922\|Ga0137394_10706122	All Organisms → cellular organisms → Bacteria → Acidobacteria	849	Open in IMG/M
3300012922\|Ga0137394_10954492	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	714	Open in IMG/M
3300012923\|Ga0137359_10916790	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	755	Open in IMG/M
3300012925\|Ga0137419_11070810	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	670	Open in IMG/M
3300012931\|Ga0153915_12077828	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300012944\|Ga0137410_10122030	All Organisms → cellular organisms → Bacteria → Acidobacteria	1956	Open in IMG/M
3300012948\|Ga0126375_11442567	All Organisms → cellular organisms → Bacteria → Acidobacteria	585	Open in IMG/M
3300012964\|Ga0153916_10311256	All Organisms → cellular organisms → Bacteria	1614	Open in IMG/M
3300012971\|Ga0126369_10499488	All Organisms → cellular organisms → Bacteria → Acidobacteria	1274	Open in IMG/M
3300012976\|Ga0134076_10285474	All Organisms → cellular organisms → Bacteria → Acidobacteria	712	Open in IMG/M
3300012977\|Ga0134087_10767934	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300015054\|Ga0137420_1048856	All Organisms → cellular organisms → Bacteria → Acidobacteria	1767	Open in IMG/M
3300015242\|Ga0137412_10870617	Not Available	655	Open in IMG/M
3300015356\|Ga0134073_10378253	Not Available	528	Open in IMG/M
3300015357\|Ga0134072_10334525	Not Available	576	Open in IMG/M
3300015358\|Ga0134089_10193727	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300017943\|Ga0187819_10807119	All Organisms → cellular organisms → Bacteria → Acidobacteria	527	Open in IMG/M
3300018012\|Ga0187810_10161813	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	901	Open in IMG/M
3300021168\|Ga0210406_10664788	All Organisms → cellular organisms → Bacteria → Acidobacteria	806	Open in IMG/M
3300021432\|Ga0210384_10673518	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	926	Open in IMG/M
3300021474\|Ga0210390_10342729	All Organisms → cellular organisms → Bacteria	1265	Open in IMG/M
3300021479\|Ga0210410_11243379	All Organisms → cellular organisms → Bacteria → Acidobacteria	637	Open in IMG/M
3300021560\|Ga0126371_10564342	All Organisms → cellular organisms → Bacteria → Acidobacteria	1287	Open in IMG/M
3300025915\|Ga0207693_10447918	All Organisms → cellular organisms → Bacteria	1009	Open in IMG/M
3300025934\|Ga0207686_10973102	All Organisms → cellular organisms → Bacteria → Acidobacteria	688	Open in IMG/M
3300025939\|Ga0207665_10941671	All Organisms → cellular organisms → Bacteria → Acidobacteria	686	Open in IMG/M
3300026308\|Ga0209265_1050913	Not Available	1276	Open in IMG/M
3300026309\|Ga0209055_1245293	All Organisms → cellular organisms → Bacteria → Proteobacteria	553	Open in IMG/M
3300026319\|Ga0209647_1194363	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	722	Open in IMG/M
3300026333\|Ga0209158_1276495	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300026551\|Ga0209648_10025088	All Organisms → cellular organisms → Bacteria	5210	Open in IMG/M
3300027603\|Ga0209331_1062707	Not Available	931	Open in IMG/M
3300027629\|Ga0209422_1012944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	2059	Open in IMG/M
3300027635\|Ga0209625_1010949	All Organisms → cellular organisms → Bacteria → Acidobacteria	1974	Open in IMG/M
3300027706\|Ga0209581_1145985	Not Available	773	Open in IMG/M
3300027787\|Ga0209074_10339930	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300027846\|Ga0209180_10030204	All Organisms → cellular organisms → Bacteria → Proteobacteria	2917	Open in IMG/M
3300027882\|Ga0209590_10391016	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	898	Open in IMG/M
3300028047\|Ga0209526_10071204	All Organisms → cellular organisms → Bacteria → Acidobacteria	2446	Open in IMG/M
3300028047\|Ga0209526_10703021	Not Available	636	Open in IMG/M
3300031231\|Ga0170824_108840295	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300031231\|Ga0170824_118876540	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300031231\|Ga0170824_121338340	All Organisms → cellular organisms → Bacteria	1292	Open in IMG/M
3300031754\|Ga0307475_10177422	All Organisms → cellular organisms → Bacteria	1699	Open in IMG/M
3300031754\|Ga0307475_10636046	All Organisms → cellular organisms → Bacteria → Acidobacteria	853	Open in IMG/M
3300031754\|Ga0307475_11247004	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300031820\|Ga0307473_10436335	All Organisms → cellular organisms → Bacteria → Acidobacteria	868	Open in IMG/M
3300031823\|Ga0307478_11237370	All Organisms → cellular organisms → Bacteria → Acidobacteria	621	Open in IMG/M
3300032180\|Ga0307471_102732186	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	626	Open in IMG/M
3300032261\|Ga0306920_103771927	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.20%
Host-Associated	Host-Associated	1.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.09%
Aquatic	Environmental → Aquatic	8.11%
Plants	Host-Associated → Plants	1.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.09%
Freshwater	Environmental → Aquatic → Freshwater	4.50%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.80%
Sediment	Environmental → Aquatic → Sediment	1.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.68%
Loam	Environmental → Terrestrial → Soil → Loam	14.41%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.50%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	47.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.51%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.71%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.70%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.80%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.80%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	33.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.21%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.41%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.60%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.70%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.80%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.80%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.80%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.90%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.90%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
3300001167	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2	Environmental	Open in IMG/M
3300001369	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027706	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deeps_00087360	2199352024	Soil	EAGVPFMAIIAAHEHGYRARAAAFRKLGALALLPRATALNAWLTNIR
JGI12673J13574_10092462	3300001167	Forest Soil	GVPFIAIIAEGEHGYRARAAAFRKLGALALLPRATALNKWLVGRR*
JGI12701J14581_10092112	3300001369	Forest Soil	FMAIIAQGEHGYRARASAFRKLGALALLPRATALNKWLVARP*
JGI12635J15846_100518331	3300001593	Forest Soil	ALAARDANVPFMAIIARGEHGYRQRAARFRELGALALLPRATELFRILK*
JGI12635J15846_103589442	3300001593	Forest Soil	LAARDAGVPFMAIIAEGEHGYRARAAVFRKLGALALLPRATALNQWLVGRP*
JGI12053J15887_1000057616	3300001661	Forest Soil	MAIIGEGEYGYRARASAFRKLGALALLPRATALNKWLVARP*
JGIcombinedJ26739_1015602323	3300002245	Forest Soil	AGVPFMAIIAEDEHGYRARAAAFRKLGALALLPGATALNKWLAARR*
Ga0066680_108980131	3300005174	Soil	AGVPFMAIIARGEHGYRQRAARFRELGALALLPRVTGLFRILS*
Ga0066679_101863211	3300005176	Soil	LAIIARDEHRFRERAARFRELGALALLPRATELNRILPQ*
Ga0066690_101127004	3300005177	Soil	VPFMAIIAPGEHGYRERAKRFRELGALALLPRATDLRHWLS*
Ga0066671_100546281	3300005184	Soil	PFMAIIAPGEYGYRQRAARFRELGALALLPRVKELFGYLKKAD*
Ga0066388_1024733982	3300005332	Tropical Forest Soil	AIIAVGEHNYRKRAAKFRALGAVALLPRATAVNRWLKSSTR*
Ga0066681_105973391	3300005451	Soil	FMAVIARGEHGYRQRAAQFRELGAIALLPRVTELFRKLK*
Ga0066692_104437041	3300005555	Soil	NVPFMAIIAPGEHGYLERAARFRELGALALLPRASDLNRRLA*
Ga0066704_109288562	3300005557	Soil	DASVSFMAIIAPGEHGYRQRAARFRELGAIALLPRVAELFRKLK*
Ga0066903_1013224133	3300005764	Tropical Forest Soil	FAIIAPGEHGYRERAARFKELGALGLLRRATDLKDYLKPQRPAK*
Ga0075023_1004175542	3300006041	Watersheds	GVPFMAIIAPGEHRYRQRAARFRELGALALLPRATNLSAWLKYDD*
Ga0066652_1009352642	3300006046	Soil	LAARDAGVPFMAIIAPGEHGYRQRAAHFHEVGALALLPRVKELFRHLKKAN*
Ga0075028_1007384001	3300006050	Watersheds	MAIIAPGEHRYRQRAARFRELGALALLPRVTELFRILK*
Ga0070716_1017414261	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	RDAGVPFMAIIAPGEHGYRERAKRFRELGALALLPRATDLRYWLS*
Ga0079222_103820392	3300006755	Agricultural Soil	AARDAGVPFVAIIAAGEHGYRERAAIFRKLGAVRLLAGAGDLNRLLPAKKNRT*
Ga0066665_109826852	3300006796	Soil	DAGVPFLAIIAPGEHGYRQRAARFRALGALALLPRANELSRYLKKAN*
Ga0066659_102065541	3300006797	Soil	RDAGVPFLAIIARDEHRYRERATRFRKLGALALLPRATELNRILPQ*
Ga0073928_101993512	3300006893	Iron-Sulfur Acid Spring	ARDAGVPFMAIIAESEHGYRARASAFRKLGALALLPRATALNKWLAVRP*
Ga0073928_112432471	3300006893	Iron-Sulfur Acid Spring	PFMAFIAPGEHGFRARSRRFRELGALALLPRAKDLNHWLMKAGKINALAS*
Ga0099793_100060441	3300007258	Vadose Zone Soil	IAPGEHGYRQRAARFRELGALALLPRANELSRYLKKAD*
Ga0099830_105989031	3300009088	Vadose Zone Soil	ALAAREASVPFVAIIAPGEHRYRQRAARFRELGARALLPRVTDLFRILK*
Ga0099830_110885832	3300009088	Vadose Zone Soil	ALAAREASVPFVAIIAPGEHRYRQRAARFRELGACALLPRVTDLFRILK*
Ga0099828_102508111	3300009089	Vadose Zone Soil	ARDASVPFMAIIAPGEHGYRQRAARFRELGALALLPRVTELFRILK*
Ga0099828_114238941	3300009089	Vadose Zone Soil	ANVPFMAIVAPGEDGYRRRAARFRELGALALLPRLAELFRILKQI*
Ga0099827_104197641	3300009090	Vadose Zone Soil	LAARDAGVPFMAIIAPGEHRYRERAARFRELGAIALLQRATDLNTWLE*
Ga0099827_114745931	3300009090	Vadose Zone Soil	RDAGVPFMAVIAPDEHRYRQRAARFRELGAVALLPRATDLNAWLK*
Ga0105242_108437232	3300009176	Miscanthus Rhizosphere	RDAGVPFFAILPPGSHDYRKRAARFRELGAIALLPRATALNSWLAESGNSAAT*
Ga0116117_10639091	3300009635	Peatland	AARDAGVPFMAIIAPGEHGYRARAKRFRELGALGLLPRATDLNRWLKVKAEC*
Ga0126373_106210551	3300010048	Tropical Forest Soil	ALAARDAGVPFFAIIARDEHRYRERVARFRELGALALLPRATELNRWLS*
Ga0126373_108223292	3300010048	Tropical Forest Soil	PFFAIIARDEHRYRERATRFRELGALALLPRATELDRLLRPT*
Ga0126373_125577942	3300010048	Tropical Forest Soil	VPFMAIIAQEEHRYRERAARFRELGALALLPRATELNRLLA*
Ga0134062_101560463	3300010337	Grasslands Soil	IIAPDEHGYRERSKRFRELGALALLPRATDLQKWLA*
Ga0126370_122271511	3300010358	Tropical Forest Soil	REAGVPFLAIIAPGEHRYRERAAKFRELGALGLLHRATELNRWLA*
Ga0126378_128689322	3300010361	Tropical Forest Soil	VPFMAIIARGEHRYRERAARFRELGAMALLPRATELNRLLA*
Ga0137392_108933591	3300011269	Vadose Zone Soil	ARDANVPFMAIIARGEHRYHQRAARFRELGALALLPRVTELFRILK*
Ga0137393_100398667	3300011271	Vadose Zone Soil	AGVPFMAIIAGGEYGYRQRAARFRELGAVALLPRATELKRLLK*
Ga0137389_102064093	3300012096	Vadose Zone Soil	APGEHGYRQRAARFRELGALALLPRANELSRYLKKAD*
Ga0137364_114286312	3300012198	Vadose Zone Soil	LAIIAPGEHGYRQRAARFRELGALALLSRANELSRYLKEAN*
Ga0137383_101028781	3300012199	Vadose Zone Soil	MAIIASGEHGYRQRAARFRELGALALLPRVTGLFRILK*
Ga0137382_112984022	3300012200	Vadose Zone Soil	LAIIAPGEHGYRQRAARFRELGALALLSRANELSRYLKAAN*
Ga0137363_100369534	3300012202	Vadose Zone Soil	AIIAPGEHGYRQRAARFRELGALALLPRANELSRYLKKAD*
Ga0137363_112579472	3300012202	Vadose Zone Soil	FLAIIAPGEHRYRQRAARFRKLGALALLPRAKDLNTWLK*
Ga0137362_112545162	3300012205	Vadose Zone Soil	AARQANVPFMAIIAPGEHGYRQRARRFRELGALALLPRVKDLFRTLK*
Ga0137380_101638051	3300012206	Vadose Zone Soil	ARDAGVPFVAIIGRGEHGYRQRAARFREVGALALLPRVTELFRILK*
Ga0137380_102546483	3300012206	Vadose Zone Soil	RDAGVPFMAIIAPAEHRYRERAARFRELGAIALLQRAADLNTWLE*
Ga0137376_105044712	3300012208	Vadose Zone Soil	GVPFLAIIAPGEHGYRQRAARFRALGALALLPRANELSRYLKKAN*
Ga0137376_106330542	3300012208	Vadose Zone Soil	GVPFLAIIAPGEHGYRQRAARFRELGALALLPRASELSRYLKETN*
Ga0137379_115477712	3300012209	Vadose Zone Soil	AAVPFMAIIAPGEHRYRERAARFRALGAIALLQRATDLNTWLE*
Ga0137386_101690181	3300012351	Vadose Zone Soil	ARGANVPFMAIIAPGEHGYRQRAARFRELGALALLPRVTELFRILK*
Ga0137386_105625671	3300012351	Vadose Zone Soil	IIAHDEHGYRERAARFRELGALALLPRVAELNRWLS*
Ga0137384_111294792	3300012357	Vadose Zone Soil	MAIIAPGEHRYRERAARFRELGAIALLQRAADLNTWLE*
Ga0137385_113316932	3300012359	Vadose Zone Soil	ALAAREAAVPFMAIIAPGEHRYHERAARFRALGAIALLQRATDLNTWLE*
Ga0137390_105547181	3300012363	Vadose Zone Soil	REANVPFMAIIAPGEHGYRQRARRFRDLGARALLPRVKDLFRTLK*
Ga0137358_101785891	3300012582	Vadose Zone Soil	LAARDARVPFMAIIAPGEHGYRERAKRFRELGALALLPRATDLRHWLS*
Ga0137396_112903912	3300012918	Vadose Zone Soil	RAAGVPFMAIIAPGEDGYRQRAAQFRELGALALLPRATELKRWLK*
Ga0137394_107061221	3300012922	Vadose Zone Soil	LAARDAGVPFLAIIAPGEHRYRQRAARFRELGALALLPRATGLNRWLK*
Ga0137394_109544922	3300012922	Vadose Zone Soil	AIIAAGEHGYRQRAARFRELGALALLPRVTNLFRILG*
Ga0137359_109167901	3300012923	Vadose Zone Soil	RDAGVPFLAIIAPGEHGYRQRAARFRELGALAFLPRANELSRYLKKTN*
Ga0137419_110708102	3300012925	Vadose Zone Soil	PFLAIIAPGEHGYRQRAARFRELGALALLPRANELSRYLKKAN*
Ga0153915_120778282	3300012931	Freshwater Wetlands	RDAGVPFLAVLPRSAHAYRAQAAQFRKLGALALLHRATELTRWLASPR*
Ga0137410_101220301	3300012944	Vadose Zone Soil	RDAGVPFLAIIASGEHGYRQRAARFRELGALALLPRVNELFRYLKKTN*
Ga0126375_114425671	3300012948	Tropical Forest Soil	GVPFLAIIAAGEHNYRARAAQFRELGAVALLPRAVAVNAWLRKNATKLKV*
Ga0153916_103112563	3300012964	Freshwater Wetlands	AARDAGVPFLAVLPRSAHAYRAQAAQFRKLGALALLQRATELTRWLASLR*
Ga0126369_104994883	3300012971	Tropical Forest Soil	AIIARNEHRYRERAARFRELGALALLPRATELERLLPYA*
Ga0134076_102854742	3300012976	Grasslands Soil	AAGVPFMAIIAPGEHGYRQRAARFRELGAIALLPRVAELFRKLK*
Ga0134087_107679342	3300012977	Grasslands Soil	DAGVPFMAIIAPGEYGYRQRAARFRELGALALLPRVKELFGYLKKAD*
Ga0137420_10488562	3300015054	Vadose Zone Soil	GEHGYRQRAARFRELGALALLPRVNELFRYLKKTN*
Ga0137412_108706172	3300015242	Vadose Zone Soil	MAIIAAGEHGYRQRAARFRELGALALLPLVTGLFRVLK*
Ga0134073_103782531	3300015356	Grasslands Soil	IARGEHGYRQRAAQFRELGAIALLPRVTELFRKLK*
Ga0134072_103345252	3300015357	Grasslands Soil	FLAIIARDEHRYRERATRFRKLWALALLPRATELNRILPQ*
Ga0134089_101937272	3300015358	Grasslands Soil	VPFMAIIAPGEHRYRERAARFRELGAIALLQRATDLNTWLE*
Ga0187819_108071192	3300017943	Freshwater Sediment	EAGVPFLAIIAPGEHSYRERARRFRELGALALLRRATELNRWLKLHAAPAWKKAI
Ga0187810_101618132	3300018012	Freshwater Sediment	AIVAPGEIRARERAARFRELGALALLPRVTKLFGLLK
Ga0210406_106647882	3300021168	Soil	MAIIAPGEHRYRQRAARFRELGALAFLPRATDLNRWLR
Ga0210384_106735181	3300021432	Soil	IIAPGEHGYRQRAARFRELGALALLPRANELSRFLKKAS
Ga0210390_103427291	3300021474	Soil	MAIIAEGEHGYRARAAAFRKLGALALLPRATALNKWLVVRR
Ga0210410_112433791	3300021479	Soil	MAIIARGEHGYRQRAARFRELGALALLPRVTELFRILK
Ga0126371_105643423	3300021560	Tropical Forest Soil	ARDAGVPFMAIIATGEHGYRERAKRFRELGALALLPRATDLNKFL
Ga0207693_104479183	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LAARDAGVPFMTIIAEGEHGYRARASAFRKLGALALLPRATALNKWLVAR
Ga0207686_109731021	3300025934	Miscanthus Rhizosphere	RDAGVPFFAILPPGSHDYRKRAARFRELGAIALLPRATALNSWLAESGNSAAT
Ga0207665_109416712	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	LAARDAGVPFMAIIAPGEHGYRERAKRFRELGALALLPRATDLRYWLS
Ga0209265_10509131	3300026308	Soil	DAGVPFLAIIARDEHRFRERAARFRELGALALLPRATELNRILPQ
Ga0209055_12452932	3300026309	Soil	DALAARDASVSFMAIIAPGEHGYRQRAARFRELGAIALLPRVAELFRKLK
Ga0209647_11943632	3300026319	Grasslands Soil	EANVPFMAIIAAGEHGYRQRAARFRELGALALLPRVTNLFRILG
Ga0209158_12764951	3300026333	Soil	MAIIAPGEHGFGQRAARFRELGALALLPRATDLNRRLA
Ga0209648_100250887	3300026551	Grasslands Soil	RDAGVPFMAIIAPGEHGYQQRAARFRELGALALLPRANELSGYLKKAN
Ga0209331_10627072	3300027603	Forest Soil	DAGVPFMAIIAEGEHGYRARASVFRKLGALALLPRATALNKWLAVRS
Ga0209422_10129442	3300027629	Forest Soil	AARDAGVPFMAIIAEGEHGYRARAAVFRKLGALALLPRATALNQWLVGRP
Ga0209625_10109495	3300027635	Forest Soil	FMAIIAQGEHGYRARGAAFRKLGALALLPRATTLNKWLAARR
Ga0209581_11459851	3300027706	Surface Soil	GEHNYRARAKRFRELGALALLPKATELNQWLAPKK
Ga0209074_103399302	3300027787	Agricultural Soil	VPFVAIIAAGEHGYRERAAIFRKLGAVRLLAGAGDLNRLLPAKKNRT
Ga0209180_100302041	3300027846	Vadose Zone Soil	SVPFVAIIAPGEHRYRQRAARFRELGACALLPRVTDLFRILK
Ga0209590_103910162	3300027882	Vadose Zone Soil	VPFVAIIAAGEHRYRQRAARFRELGACALLPGVTELFRILK
Ga0209526_100712041	3300028047	Forest Soil	MAIIAPNEHGYRARAATFRKLGARALLPRATRLNAWLATPT
Ga0209526_107030212	3300028047	Forest Soil	FVAIIAQGEHGYRARASAFRKLGALALLPRATALNKWLVARP
Ga0170824_1088402951	3300031231	Forest Soil	RDAGVPFMAIIAEGEHGYRARAPAFRKLGALALLPRATALNKWLVGQR
Ga0170824_1188765402	3300031231	Forest Soil	ALAARDAGVPFMAIIAAHEHGYRARAAAFRNLGALALLPRATALNSFLTNRR
Ga0170824_1213383401	3300031231	Forest Soil	MAIIAEGEHGYRARAAAFRKFGALALLPRATVLNKWLVARR
Ga0307475_101774221	3300031754	Hardwood Forest Soil	ARDAGVPFMAIIARGEHGYRQRAGRFRELGALALLPRVTGLFRILK
Ga0307475_106360461	3300031754	Hardwood Forest Soil	ALAAREAQVPFIAILPLGAHASRERAKKFRELGALGLLPRATDLNHWLRPI
Ga0307475_112470042	3300031754	Hardwood Forest Soil	FLAIIAPGEHGYRQRAARFRELGALALLPRASELSRYLKKTN
Ga0307473_104363351	3300031820	Hardwood Forest Soil	FLAIIAPGEHRYRLRAARFRELGALALLSRATELNRWLK
Ga0307478_112373701	3300031823	Hardwood Forest Soil	VPFMAIIAPGEHGYRQRAARFRELGARALLGRVTELFRILK
Ga0307471_1027321861	3300032180	Hardwood Forest Soil	APGEYGYRQRAARFRELGALALLPRVKELFGYLKKAD
Ga0306920_1037719271	3300032261	Soil	AARNAGVRFVGLLLPGQSRYRERAARFRELGALALLPRARDLDTLLQVP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F086348

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences