Metagenome / Metatranscriptome Family F086334

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086334
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	62 residues
Representative Sequence	MKNIRVIQTGIDVSAIQKQLDQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVMGGVSKPG
Number of Associated Samples	91
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	15.45 %
% of genes near scaffold ends (potentially truncated)	98.20 %
% of genes from short scaffolds (< 2000 bps)	87.39 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (58.559 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (25.225 % of family members)
Environment Ontology (ENVO)	Unclassified (37.838 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (50.450 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.87% β-sheet: 1.61% Coil/Unstructured: 64.52%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF00565	SNase	26.13
PF12849	PBP_like_2	2.70
PF16075	DUF4815	0.90
PF00733	Asn_synthase	0.90
PF04165	DUF401	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG1906	Predicted GntP-related membrane permease AF0261, DUF401 family	General function prediction only [R]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
All Organisms	root	All Organisms	41.44 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Viruses	superkingdom	All Organisms → Viruses	29.73 %
cellular organisms	root	All Organisms → cellular organisms	11.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	28.83 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	11.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	28.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.70 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.80 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	28.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.70 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.80 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	28.83 %
Pelagibacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	1.80 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.80 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.90 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	24.32 %
Pelagibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	1.80 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.80 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	1.80 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1.80 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.90 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	24.32 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.80 %
Ralstonia phage RsoM2USA	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Ralstonia phage RsoM2USA	1.80 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	1.80 %
unclassified Verrucomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales	0.90 %
unclassified Pelagibacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae	0.90 %
Marinovum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Marinovum	0.90 %
Candidatus Pelagibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	0.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	24.32 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.80 %
Ralstonia phage RsoM2USA	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Ralstonia phage RsoM2USA	1.80 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.90 %
unclassified Marinovum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Marinovum → unclassified Marinovum	0.90 %
unclassified Candidatus Pelagibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter	0.90 %
Pelagibacteraceae bacterium TMED287	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED287	0.90 %
unclassified Myoviridae	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae	0.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	24.32 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.80 %
Ralstonia phage RsoM2USA	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Ralstonia phage RsoM2USA	1.80 %
Marinovum sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Marinovum → unclassified Marinovum → Marinovum sp.	0.90 %
Pelagibacter phage HTVC008M	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M	0.90 %
Candidatus Pelagibacter sp. IMCC9063	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC9063	0.90 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.90 %
Pelagibacteraceae bacterium TMED287	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED287	0.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001419\|JGI11705J14877_10035344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1854	Open in IMG/M
3300002835\|B570J40625_100687906	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	918	Open in IMG/M
3300003277\|JGI25908J49247_10064140	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	931	Open in IMG/M
3300004763\|Ga0007746_1405439	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	660	Open in IMG/M
3300004786\|Ga0007753_1455040	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	524	Open in IMG/M
3300005580\|Ga0049083_10178433	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	724	Open in IMG/M
3300005584\|Ga0049082_10081032	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300005584\|Ga0049082_10324225	Not Available	511	Open in IMG/M
3300005585\|Ga0049084_10067312	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1319	Open in IMG/M
3300006802\|Ga0070749_10087507	All Organisms → cellular organisms → Bacteria	1854	Open in IMG/M
3300006802\|Ga0070749_10166602	All Organisms → cellular organisms → Bacteria	1275	Open in IMG/M
3300006802\|Ga0070749_10207518	Not Available	1121	Open in IMG/M
3300006802\|Ga0070749_10711737	Not Available	536	Open in IMG/M
3300006868\|Ga0075481_10140234	Not Available	883	Open in IMG/M
3300006868\|Ga0075481_10285913	Not Available	577	Open in IMG/M
3300007234\|Ga0075460_10239389	Not Available	608	Open in IMG/M
3300007539\|Ga0099849_1056201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1628	Open in IMG/M
3300007539\|Ga0099849_1077021	Not Available	1354	Open in IMG/M
3300007540\|Ga0099847_1022138	All Organisms → cellular organisms → Bacteria	2064	Open in IMG/M
3300007540\|Ga0099847_1100519	Not Available	881	Open in IMG/M
3300007541\|Ga0099848_1050191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Marinovum → unclassified Marinovum → Marinovum sp.	1682	Open in IMG/M
3300007541\|Ga0099848_1233794	Not Available	648	Open in IMG/M
3300007542\|Ga0099846_1097688	Not Available	1083	Open in IMG/M
3300007542\|Ga0099846_1285372	Not Available	567	Open in IMG/M
3300007640\|Ga0070751_1103328	Not Available	1176	Open in IMG/M
3300007725\|Ga0102951_1132338	Not Available	704	Open in IMG/M
3300008012\|Ga0075480_10251406	Not Available	914	Open in IMG/M
3300008267\|Ga0114364_1153791	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	628	Open in IMG/M
3300009000\|Ga0102960_1036224	Not Available	1830	Open in IMG/M
3300009001\|Ga0102963_1365179	Not Available	566	Open in IMG/M
3300009159\|Ga0114978_10667056	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	595	Open in IMG/M
3300009183\|Ga0114974_10494506	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	687	Open in IMG/M
3300009469\|Ga0127401_1093032	Not Available	803	Open in IMG/M
3300010316\|Ga0136655_1168579	Not Available	652	Open in IMG/M
3300010334\|Ga0136644_10475474	Not Available	700	Open in IMG/M
3300010368\|Ga0129324_10151681	Not Available	965	Open in IMG/M
3300013004\|Ga0164293_11061990	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	502	Open in IMG/M
(restricted) 3300013125\|Ga0172369_10192896	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1176	Open in IMG/M
(restricted) 3300013126\|Ga0172367_10172356	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1397	Open in IMG/M
(restricted) 3300013131\|Ga0172373_10797368	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Ralstonia phage RsoM2USA	552	Open in IMG/M
(restricted) 3300013132\|Ga0172372_10667305	Not Available	661	Open in IMG/M
(restricted) 3300013137\|Ga0172375_10550928	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	757	Open in IMG/M
(restricted) 3300013137\|Ga0172375_10947710	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	516	Open in IMG/M
(restricted) 3300014720\|Ga0172376_10534496	Not Available	651	Open in IMG/M
3300017697\|Ga0180120_10032580	Not Available	2401	Open in IMG/M
3300017697\|Ga0180120_10058011	Not Available	1734	Open in IMG/M
3300017777\|Ga0181357_1286208	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	564	Open in IMG/M
3300017778\|Ga0181349_1286687	Not Available	537	Open in IMG/M
3300017967\|Ga0181590_10574545	Not Available	775	Open in IMG/M
3300017967\|Ga0181590_10749565	Not Available	654	Open in IMG/M
3300017969\|Ga0181585_10048697	Not Available	3321	Open in IMG/M
3300017969\|Ga0181585_10830854	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	596	Open in IMG/M
3300018421\|Ga0181592_10115494	All Organisms → cellular organisms → Bacteria	2074	Open in IMG/M
3300018421\|Ga0181592_10168537	Not Available	1658	Open in IMG/M
3300018424\|Ga0181591_10167922	Not Available	1747	Open in IMG/M
3300020053\|Ga0181595_10392873	Not Available	540	Open in IMG/M
3300020074\|Ga0194113_10623845	Not Available	757	Open in IMG/M
3300020084\|Ga0194110_10233781	Not Available	1354	Open in IMG/M
3300020162\|Ga0211735_11551825	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1525	Open in IMG/M
3300020172\|Ga0211729_10167877	Not Available	525	Open in IMG/M
3300020196\|Ga0194124_10338423	Not Available	711	Open in IMG/M
3300020205\|Ga0211731_10439061	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	604	Open in IMG/M
3300020220\|Ga0194119_10831909	Not Available	543	Open in IMG/M
3300020563\|Ga0208082_1067060	Not Available	588	Open in IMG/M
3300021091\|Ga0194133_10289153	Not Available	999	Open in IMG/M
3300021093\|Ga0194123_10394152	Not Available	635	Open in IMG/M
3300021368\|Ga0213860_10423477	Not Available	575	Open in IMG/M
3300021957\|Ga0222717_10099878	Not Available	1814	Open in IMG/M
3300021957\|Ga0222717_10493660	Not Available	660	Open in IMG/M
3300021958\|Ga0222718_10325800	Not Available	789	Open in IMG/M
3300021959\|Ga0222716_10665533	Not Available	558	Open in IMG/M
3300021960\|Ga0222715_10079146	Not Available	2172	Open in IMG/M
3300021960\|Ga0222715_10153546	All Organisms → cellular organisms → Bacteria	1423	Open in IMG/M
3300021962\|Ga0222713_10034751	All Organisms → Viruses → Predicted Viral	4012	Open in IMG/M
3300021964\|Ga0222719_10139014	Not Available	1726	Open in IMG/M
3300022068\|Ga0212021_1127021	Not Available	522	Open in IMG/M
3300022200\|Ga0196901_1027513	Not Available	2237	Open in IMG/M
3300022925\|Ga0255773_10101647	Not Available	1512	Open in IMG/M
3300022937\|Ga0255770_10068991	All Organisms → cellular organisms → Bacteria	2147	Open in IMG/M
3300023115\|Ga0255760_10528699	Not Available	511	Open in IMG/M
3300023116\|Ga0255751_10174211	Not Available	1233	Open in IMG/M
3300023170\|Ga0255761_10476531	Not Available	596	Open in IMG/M
3300023180\|Ga0255768_10149495	Not Available	1480	Open in IMG/M
3300025647\|Ga0208160_1017390	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2322	Open in IMG/M
3300025655\|Ga0208795_1059218	Not Available	1110	Open in IMG/M
3300025674\|Ga0208162_1127233	Not Available	724	Open in IMG/M
3300025687\|Ga0208019_1015114	Not Available	3160	Open in IMG/M
3300025687\|Ga0208019_1021919	Not Available	2489	Open in IMG/M
3300025751\|Ga0208150_1017296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC9063	2564	Open in IMG/M
3300025751\|Ga0208150_1107385	Not Available	908	Open in IMG/M
3300025759\|Ga0208899_1162477	Not Available	750	Open in IMG/M
3300025759\|Ga0208899_1253293	Not Available	522	Open in IMG/M
3300026187\|Ga0209929_1143808	Not Available	587	Open in IMG/M
3300027518\|Ga0208787_1036357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED287	1468	Open in IMG/M
3300027593\|Ga0255118_1064234	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	609	Open in IMG/M
3300027627\|Ga0208942_1205732	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	503	Open in IMG/M
3300027649\|Ga0208960_1118748	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	692	Open in IMG/M
3300027744\|Ga0209355_1150119	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	998	Open in IMG/M
3300027747\|Ga0209189_1411538	Not Available	500	Open in IMG/M
3300027779\|Ga0209709_10065569	Not Available	2025	Open in IMG/M
3300027917\|Ga0209536_101123962	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M	965	Open in IMG/M
3300032092\|Ga0315905_10763899	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	847	Open in IMG/M
3300032462\|Ga0335396_10348581	Not Available	961	Open in IMG/M
3300033994\|Ga0334996_0358567	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Ralstonia phage RsoM2USA	700	Open in IMG/M
3300033996\|Ga0334979_0567846	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	606	Open in IMG/M
3300034061\|Ga0334987_0511518	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	729	Open in IMG/M
3300034103\|Ga0335030_0851940	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	529	Open in IMG/M
3300034120\|Ga0335056_0213308	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1108	Open in IMG/M
3300034120\|Ga0335056_0458142	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	678	Open in IMG/M
3300034122\|Ga0335060_0255198	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	976	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.10%
Terrestrial	Environmental → Terrestrial	0.90%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	51.35%
Freshwater	Environmental → Aquatic → Freshwater	42.34%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	4.50%
Unclassified	Environmental → Aquatic → Unclassified	0.90%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.90%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	29.73%
Lake	Environmental → Aquatic → Freshwater → Lake	27.03%
Lentic	Environmental → Aquatic → Freshwater → Lentic	12.61%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	12.61%
Unclassified	Environmental → Aquatic → Marine → Unclassified	7.21%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	4.50%
Oceanic	Environmental → Aquatic → Marine → Oceanic	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.90%
River	Environmental → Aquatic → Freshwater → River	0.90%
Ice	Environmental → Aquatic → Freshwater → Ice	0.90%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified	0.90%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	29.73%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	27.03%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	12.61%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	10.81%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	7.21%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	3.60%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.90%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.90%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	0.90%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	0.90%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.90%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment	0.90%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified → Unclassified	0.90%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	25.23%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	13.51%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	12.61%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	7.21%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	5.41%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	5.41%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	5.41%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	4.50%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	3.60%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	2.70%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	2.70%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	1.80%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	0.90%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.90%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.90%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	0.90%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.90%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	0.90%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	0.90%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	0.90%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment	0.90%
Meromictic Pond	Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond	0.90%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001419	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline water (15 m)	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300004763	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004786	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DN (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005580	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF	Environmental	Open in IMG/M
3300005584	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF	Environmental	Open in IMG/M
3300005585	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006868	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA	Environmental	Open in IMG/M
3300007234	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA	Environmental	Open in IMG/M
3300007539	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG	Environmental	Open in IMG/M
3300007540	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG	Environmental	Open in IMG/M
3300007541	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG	Environmental	Open in IMG/M
3300007542	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG	Environmental	Open in IMG/M
3300007640	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28	Environmental	Open in IMG/M
3300007725	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_H2O_MG	Environmental	Open in IMG/M
3300008012	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA	Environmental	Open in IMG/M
3300008267	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR	Environmental	Open in IMG/M
3300009000	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG	Environmental	Open in IMG/M
3300009001	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG	Environmental	Open in IMG/M
3300009154	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG	Environmental	Open in IMG/M
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental	Open in IMG/M
3300009183	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG	Environmental	Open in IMG/M
3300009469	Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 6m depth; DNA IDBA-UD	Environmental	Open in IMG/M
3300010316	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNA	Environmental	Open in IMG/M
3300010334	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)	Environmental	Open in IMG/M
3300010368	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNA	Environmental	Open in IMG/M
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental	Open in IMG/M
3300013125 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_11.25m	Environmental	Open in IMG/M
3300013126 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m	Environmental	Open in IMG/M
3300013131 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m	Environmental	Open in IMG/M
3300013132 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5m	Environmental	Open in IMG/M
3300013137 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_11.1m	Environmental	Open in IMG/M
3300014720 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_35m	Environmental	Open in IMG/M
3300017697	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)	Environmental	Open in IMG/M
3300017777	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017778	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017967	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017969	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018421	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018424	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300020053	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041401AS metaG (spades assembly)	Environmental	Open in IMG/M
3300020074	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m	Environmental	Open in IMG/M
3300020084	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200m	Environmental	Open in IMG/M
3300020162	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1	Environmental	Open in IMG/M
3300020172	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1	Environmental	Open in IMG/M
3300020196	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015031 Kigoma Deep Cast 0m	Environmental	Open in IMG/M
3300020205	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1	Environmental	Open in IMG/M
3300020220	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015018 Mahale Deep Cast 100m	Environmental	Open in IMG/M
3300020563	Freshwater microbial communities from Lake Mendota, WI - 09JUN2009 deep hole epilimnion ns (SPAdes)	Environmental	Open in IMG/M
3300021091	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m	Environmental	Open in IMG/M
3300021093	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015023 Mahale A surface	Environmental	Open in IMG/M
3300021368	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550	Environmental	Open in IMG/M
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental	Open in IMG/M
3300021960	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D	Environmental	Open in IMG/M
3300021962	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D	Environmental	Open in IMG/M
3300021964	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D	Environmental	Open in IMG/M
3300022068	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)	Environmental	Open in IMG/M
3300022200	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)	Environmental	Open in IMG/M
3300022925	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG	Environmental	Open in IMG/M
3300022937	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG	Environmental	Open in IMG/M
3300023115	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG	Environmental	Open in IMG/M
3300023116	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG	Environmental	Open in IMG/M
3300023170	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG	Environmental	Open in IMG/M
3300023180	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG	Environmental	Open in IMG/M
3300025647	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025655	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025674	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025687	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025751	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025759	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)	Environmental	Open in IMG/M
3300026187	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes)	Environmental	Open in IMG/M
3300027518	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series HT 2014_7_11 (SPAdes)	Environmental	Open in IMG/M
3300027593	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepB_8h	Environmental	Open in IMG/M
3300027627	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)	Environmental	Open in IMG/M
3300027649	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF (SPAdes)	Environmental	Open in IMG/M
3300027744	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN (SPAdes)	Environmental	Open in IMG/M
3300027747	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027779	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)	Environmental	Open in IMG/M
3300027917	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)	Environmental	Open in IMG/M
3300032092	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121	Environmental	Open in IMG/M
3300032462	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (spades assembly)	Environmental	Open in IMG/M
3300033994	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046	Environmental	Open in IMG/M
3300033996	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004	Environmental	Open in IMG/M
3300034061	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028	Environmental	Open in IMG/M
3300034103	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119	Environmental	Open in IMG/M
3300034120	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172	Environmental	Open in IMG/M
3300034122	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2014-rr0181	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11705J14877_100353443	3300001419	Saline Water And Sediment	MKNIRVXQTGIDVSAIQKQLEQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVMGGVSKPGEF
B570J40625_1006879061	3300002835	Freshwater	MKNIRILKENIDVSGIVKQLEQYPEDWGNVGRMKGTDRQDPHTKLVKSGVLQLVMGGISK
JGI25908J49247_100641401	3300003277	Freshwater Lake	MKNIRIIKENIDVSGIVKQLEQHPEDWGNVGRMKGVDRQDPHTRLVKSGVLQLVMGGISKPGEFIGDTEIC
Ga0007746_14054394	3300004763	Freshwater Lake	MKNIRIIKENIDVSGIVKQLKQHPEDWGNVGRMKGVDRQDPHTRLVKSGVLQLVMGGISK
Ga0007753_14550403	3300004786	Freshwater Lake	MKNIRIIKENIDVSGIVKQLEQNPEDWGNVGRMKGTDRQDPHTRLVKSGVLQL
Ga0049083_101784332	3300005580	Freshwater Lentic	MKNIRIIKENIDVSGIVKQLQQNPEDWGNVSRMKGVDRQDPHTRLVKSGVLQL
Ga0049082_100810321	3300005584	Freshwater Lentic	MKNIRIIKENIDVSGIVKQLQQNPEDWGNVSRMKGTDRQDPHTRLVKSGVLQLVMGGISK
Ga0049082_103242251	3300005584	Freshwater Lentic	MKNIRIIKENIDVSGIVKQLEQHPEDWGNVGRMKGTDRQDPHTRLVKSGVLQLVMGGISKPGEFIGDTEICVPTEA
Ga0049084_100673125	3300005585	Freshwater Lentic	MKNIRIIKENIDVSGIVKQLKQNPEDWGNVGRMKGIDRQDPHTRLVKSGVLQL
Ga0070749_100875071	3300006802	Aqueous	MKNIRVIQTGIDVSAIQKQLDQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVMG
Ga0070749_101666021	3300006802	Aqueous	MKNIRVIQTGIDVSAIQKQLDQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQL
Ga0070749_102075182	3300006802	Aqueous	MKNIRIIETGIDVSGIVQQLNLYPEDWGNVSRLKGTARQDPHTKLVTSGVLQLVMGG
Ga0070749_107117372	3300006802	Aqueous	MKNIRVIQTGIDVSAIQKQLEQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLV
Ga0075481_101402342	3300006868	Aqueous	MKNIRVIQTGIDVSAIQKQLDQHPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVMGGVSKPGEFVGDTEITL
Ga0075481_102859132	3300006868	Aqueous	MKNIRLIETGIDVSGIVKQLEQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVMGGISKPGEFVGD
Ga0075460_102393892	3300007234	Aqueous	MKNIRVIQTGIDVSAIQKQLEQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVMGGVSKPGEFVGDTEITLP
Ga0099849_10562012	3300007539	Aqueous	MKNIRIIQTGIDVSAIQQQLNQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQ
Ga0099849_10770212	3300007539	Aqueous	MKNIRIIETGIDVSGIVQQLEKHPEDWGNVSRLKGTARQDPHTKLVTSGVLQLVMGG
Ga0099847_10221383	3300007540	Aqueous	MKNIRVIQTGIDVSAIQKQLDQYPEDWGNVGHMKGTAKQDPHTKIVTSEVLQMVMGGV
Ga0099847_11005193	3300007540	Aqueous	MKNIRIIQTGIDVSAIQQQLDQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVMGGVSKPGEFVGDTEI
Ga0099848_10501911	3300007541	Aqueous	MKNIRIIQTGIDVSAIQQQLNQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVM
Ga0099848_12337942	3300007541	Aqueous	MKNIRIIQTGIDISAIQQQLDQYPEDWGNVGRMKGTAKQDPHTKIVTSEV
Ga0099846_10976881	3300007542	Aqueous	MKNIRIIETGIDVSGIVQQLEKYPEDWGNVSRLKGTARQDPHTKLVTSGV
Ga0099846_12853722	3300007542	Aqueous	MKNIRVIQTGIDVSAIQQQLNQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVMGGVSKPGEFVGDTEITL
Ga0070751_11033282	3300007640	Aqueous	MKNIRVIQTGIDVSAIQKQLEQHPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVMGGVSK
Ga0102951_11323381	3300007725	Water	MKNIRVIQTGIDVSAIQKQLEQYPEDWGNVGRLKGTAKQDPHTKIVTSEVLQLVMGGISKPG
Ga0075480_102514061	3300008012	Aqueous	MKNIRIIETGIDVSGIVQQLNLYPEDWGNVSRLKGTARQDPHTKLVTSGVLQLVMGGV
Ga0114364_11537911	3300008267	Freshwater, Plankton	MKNIRIIKENIDVSGIVKQLEQNPEDWGNVGRMKGTDRQDPHTRLVKSGVLQ
Ga0102960_10362242	3300009000	Pond Water	MKNIRVIQTGIDVSAIQKQLEQYPEDWGNVGRLKGTAKQDPHTKIVTSEVLQLVM
Ga0102963_13651792	3300009001	Pond Water	MKNIRVIQTGIDVSAIQKQLEQYPEDWGNVGRLKGTAKQDPHTKIVTSEVL
Ga0114963_105623162	3300009154	Freshwater Lake	MKNIRIIEKNIDVSKIREQLEQYPEDWGNASRIKGIDRQDPHSKLVT
Ga0114978_106670561	3300009159	Freshwater Lake	MKNIRIIKENIDVSGIAKQLESYPEDWGNVGRMKGTDRQDPHTKLVKSGVLQLVMGGISKPGEFIG
Ga0114974_104945062	3300009183	Freshwater Lake	MKNIRIIKENIDVSGIVKQLESYPEDWGNVGRMKGVDRQDPHTRLVKSGVLQLVMG
Ga0127401_10930321	3300009469	Meromictic Pond	MKNIRIIETGIDVSGIVQQLESYPEDWGNVSRLKGTARQDPHTKLVTSGVLQ
Ga0136655_11685792	3300010316	Freshwater To Marine Saline Gradient	MKNIRIIETGIDVSGIVQQLNLYPEDWGNVSRLKGTARQDPHTKLVTSGVLQLVMGGVSKPGEFVG
Ga0136644_104754741	3300010334	Freshwater Lake	MKNIRIIEKNIDVSKIREQLEQYPEDWGNASRLKGVDRQDPHSKLVTADVLQLVMGGISKPEEFI
Ga0129324_101516811	3300010368	Freshwater To Marine Saline Gradient	MKNIRIIETGIDVSGIVQQLEKHPEDWGNVSRLKGTARQDPHTKLVTSGVLQLVMGGV
Ga0164293_110619901	3300013004	Freshwater	MKNIRIIKENIDVSGIVKQLESYPEDWGNVGRMKGTDRQDPHNKLVKSGVLQL
(restricted) Ga0172369_101928961	3300013125	Freshwater	MKNIRIIKENIDVSGIVKDLEKYTEDWGNVSRMKGVDRQDPHTKLVRSGVLQLVMGGISKPGEFIGDTEICVPTD
(restricted) Ga0172367_101723561	3300013126	Freshwater	MKNIRIIKENIDVSEIVKDIERYPEDWGNVGRMKGVDRQDPHTKLVRSGVLQLVMGGI
(restricted) Ga0172373_107973682	3300013131	Freshwater	MKNIRIIKENIDVSEIVKDIERYPEDWGNVGRMKGIDRQDPHTKLVRSGVLQLVMGGISKPGEFIGDTEICVPTDA
(restricted) Ga0172372_106673052	3300013132	Freshwater	MKNIRIIQENIDVSEIVKDIERYPEDWGNVGRMKGVDRQDPHTKLVRSGVLQLVMGGISKPDEFI
(restricted) Ga0172375_105509281	3300013137	Freshwater	MKNIRIIKENIDVSGIVKDLEKYTEDWGNVSRMKGTDRQDPHTRLVKSGVLQLVMGGI
(restricted) Ga0172375_109477102	3300013137	Freshwater	MKNIRIIKENIDVSEIVKDLERYTEDWGNVSRMKGTDRQDPHTRLVKSGVLQLVMG
(restricted) Ga0172376_105344961	3300014720	Freshwater	MKNIRIIQENIDVSEIVKDIERYPEDWGNVGRMKGVDRQDPHTKLVRSGVLQLVMGGISKPD
Ga0180120_100325801	3300017697	Freshwater To Marine Saline Gradient	MKNIRIIETGIDVSGIVQQLNLYPEDWGNVSRLKGTARQDPHTKLVTSGVLQLVMGGVSKPG
Ga0180120_100580112	3300017697	Freshwater To Marine Saline Gradient	MCMKNIRIIETGIDVSGIVQQLEKHPEDWGNVSRLKGTARQDPHTKLVTSGVLQLVMGGVSS
Ga0181357_12862081	3300017777	Freshwater Lake	MKNIRIIKENIDVSGIVKQLQQNPEDWGNVSRMKGVDRQDPHTRLVKSGVLQLVMGGISKPGEFIGDTEIC
Ga0181349_12866872	3300017778	Freshwater Lake	MKNIRIIKENIDVSGIVKQLEQNPEDWGNVGRMKGIDRQDPHTRLVKSGVLQLVMGGISKPGEFIGDTEICV
Ga0181590_105745451	3300017967	Salt Marsh	MKNIRVIQTGIDVSAIQKQLDQYPEDWGNVGRMKGTAKQDPHTKIVTSEV
Ga0181590_107495652	3300017967	Salt Marsh	MKNIRVIQTGIDVSAIQKQLEQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVMGGVSKPGEFLGYT
Ga0181585_100486979	3300017969	Salt Marsh	MKNIRVIQTGIDVSAIQKQLDQHPEDWGNVGRMKGTARQDPHTKIVTSEVLQLVMGGV
Ga0181585_108308541	3300017969	Salt Marsh	MKNIKIIETGIDVTPIVNQLELYKDDWGNAKRTKGSSRQDPHTKLVTSDVLQLVMGGVDSPDE
Ga0181592_101154943	3300018421	Salt Marsh	MIGRMKNIRIIQTGIDVSAIQQQLNQYPEDWGNVGRMKGIAKQDPHTKIVTSEVLQLVMGGV
Ga0181592_101685371	3300018421	Salt Marsh	MKNIRVIQTGIDVSAIQKQLDQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVMGGVSKPG
Ga0181591_101679223	3300018424	Salt Marsh	MKNIRVIQTGIDVSAIQKQLDQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVMGGVSKPGEFVGDTEITLP
Ga0181595_103928732	3300020053	Salt Marsh	MKNIRIIETGIDVSGIVQQLESYPEDWGNVSRLKGTARQDPHTKLVTSGVLQL
Ga0194113_106238453	3300020074	Freshwater Lake	MKNIKIIKKNIDVSEIINQLNAHTDDWGNTKRMTGTDRQDPHTKLVSADVLQLVMGGISKPGEFIGDTEIC
Ga0194110_102337811	3300020084	Freshwater Lake	MKNIKIIKRNIDVSEIINQLNTYTDDWGNTKRMTGTDRQDPHTKLVSADVLQLVMGGVSKPGDFIG
Ga0211735_115518251	3300020162	Freshwater	MKNIRIIKENIDVSEIVKDIERYPEDWGNVGRMKGVDRQDPHTRLVKSGVLQLVMGGISKPGEFVGDTEIC
Ga0211729_101678772	3300020172	Freshwater	MKNIRIIKENIDVSEIVKDLERYNEDWGNVGRMKGIDRQDPHTRLVKSGVLQLVMGGISKPGEFVGDT
Ga0194124_103384231	3300020196	Freshwater Lake	MKNIRIIQENIDVSDIVKDLNNHPEDWGNVGRLKGVDRQDPHTKLVRSGVLQLVMGGISKPGEF
Ga0211731_104390612	3300020205	Freshwater	MKNIRIIKEDIDVSGIVKQLELYPEDWGNVSRMKGVDRQDPHTRLVKSGVLQLVMGGISKPGEFIGD
Ga0194119_108319091	3300020220	Freshwater Lake	MKNIRIIKENIDVSEIVKDIERYPEDWGNAGRMKGVDRQDPHTRLVKSDVLQLVVGGIHK
Ga0208082_10670601	3300020563	Freshwater	MKNIRIIKENIDVSGIVKQLEQHPEDWGNVGRMKGIDRQDPHTRLVKSGVLQLVMGGISK
Ga0194133_102891533	3300021091	Freshwater Lake	MKNIRIIQENIDVSDIVKDLNNHPEDWGNVGRLKGVDRQDPHTKLVRSGVLQLVMG
Ga0194123_103941521	3300021093	Freshwater Lake	MKNIRIIQENIDVSDIVKDLNNHPEDWGNVGRLKGVDRQDPHTKLVRSGVLQLVMGGISKHGEF
Ga0213860_104234772	3300021368	Seawater	MKNIRVIQTGIDVSAIQKQLDQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVMGGVSKPGEFVGDTEITLPT
Ga0222717_100998782	3300021957	Estuarine Water	MKNIRVIQTGIDVSAIQKQLEQYPEDWGNVGRLKGTAKQDPHTKIVTSEVLQLVMGG
Ga0222717_104936601	3300021957	Estuarine Water	MKNIRIIQTGIDVSAIQKQLDQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVMGGVSKPGEFV
Ga0222718_103258001	3300021958	Estuarine Water	MKNIRVIQTGIDVSAIQKQLDQYPEDWGNVGRLKGTAKQDPHTKIVTSEVLQLVMGGISKPGEFVGD
Ga0222716_106655331	3300021959	Estuarine Water	MKNIRIIETGIDVSGIVQQLNLYPEDWGNVSRLKGTARQDPHTKLVTSGVLQLVMGGVS
Ga0222715_100791463	3300021960	Estuarine Water	MKNIRIIQTGIDVSAIQKQLDQHPEDWGNVGRMKGTARQDPHTKIVTSEVLQLVMGGVSKPDEFIGDTEITL
Ga0222715_101535461	3300021960	Estuarine Water	MKNIRVIQTGIDVSAIQKQLDQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVMGGVSK
Ga0222713_100347511	3300021962	Estuarine Water	MKNIKILETGIDVTPIVNQLELYKEDWGNAKRAKGSSRQDPHTKLVTSDVLQLVMGGVDSPDEFVGDTEITIPT
Ga0222719_101390142	3300021964	Estuarine Water	MKNIRVIQTGIDVSAIQKQLEQYPEDWGNVGRLKGTAKQDPHTKIVTSEVLQ
Ga0212021_11270211	3300022068	Aqueous	MKNIRIIQTGIDVSAIQQQLNQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVMGGVSKPGEFVG
Ga0196901_10275131	3300022200	Aqueous	MKNIRIIETGIDVSGIVQQLEKHPEDWGNVSRLKGTARQDPHTKLVTSGVLQLV
Ga0255773_101016473	3300022925	Salt Marsh	MKNIRVIQTGIDVSAIQKQLDQYPEDWGNVSRLKGTAKQDPHTKIVTSEVLQLVMGGVSKPGEFVGDTEITLPTEAT
Ga0255770_100689913	3300022937	Salt Marsh	MKNIRVIQTGIDVSAIQKQLDQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVMGGVSKPGEFVGDTEITL
Ga0255760_105286991	3300023115	Salt Marsh	MKNIKILETGIDVTPILNQLELYKEDWGNAKRTKGTSRQDPHTKLVTSDVLQLVMGGVDSPDEFVG
Ga0255751_101742112	3300023116	Salt Marsh	MKNIRIIETGIDVSGIVQQLESYPEDWGNVSRLKGTARQDPHTKLVTSGVLQLVMGGVSKPGEF
Ga0255761_104765312	3300023170	Salt Marsh	MKNIRIIETGIDVSGIVQQLESYPEDWGNVSRLKGTARQDPHTKLVTSGVLQLVMGG
Ga0255768_101494951	3300023180	Salt Marsh	MKNIRVIQTGIDVSAIQKQLDQHPEDWGNVGRMKGTARQDPHTKIVTSEVLQLVMGGVSKPDE
Ga0208160_10173903	3300025647	Aqueous	MKNIRVIQTGIDVSAIQQQLNQYPEDWGNVGRMKGTAKQDPHTKIVTSEVL
Ga0208795_10592181	3300025655	Aqueous	MKNIRVIQTGIDVSAIQQQLNQYPEDWGNVGRMKGTAKQDPHTKIVTSEV
Ga0208162_11272331	3300025674	Aqueous	MKNIRIIQTGIDVSAIQQQLNQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVMGGVSK
Ga0208019_10151141	3300025687	Aqueous	MKNIRIIETGIDVSGIVKQLESYPEDWGNVSRLKGTARQDPHTKLVTSGVLQLVMGGVSKPEEFVGNT
Ga0208019_10219191	3300025687	Aqueous	MKNIRIIQTGIDVSAIQQQLDQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVMGGVSKPGEFVGDTE
Ga0208150_10172966	3300025751	Aqueous	MKNIRVIQTGIDVSAIQKQLEQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVMGGVSKPGEFVGDTEITLPT
Ga0208150_11073853	3300025751	Aqueous	MKNIRLIETGIDVSGIVKQLEQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVM
Ga0208899_11624771	3300025759	Aqueous	MKNIRVIQTGIDVSAIQKQLDQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVM
Ga0208899_12532931	3300025759	Aqueous	MKNIRVIQTGIDVSAIQKQLEQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVMGGVSKPDEFVGDT
Ga0209929_11438081	3300026187	Pond Water	MKNIRVIQTGIDVSAIQKQLDQYPEDWGNVGRMKGTAKQDPHTKIVTSEVLQLVMGGVSKPGEFVGDTEIT
Ga0208787_10363571	3300027518	Deep Subsurface	MKNIRIIKENIDVSGILKQLEQYPEDWGNVGRMKGTDRQDPHTKLVRSGVLQLVMGGISKPGEFIGDTEICVPTE
Ga0255118_10642341	3300027593	Freshwater	MKNIRIIKENIDVSGIVKQLKQHPEDWGNVGRMKGIDRQDPHTRLVKSGVLQLV
Ga0208942_12057321	3300027627	Freshwater Lentic	MKNIRIIKENIDVSGIVKQLEQNPEDWGNVGRMKGTDRQDPHTRLVKSGVLQLVMGGISKPGEFIGDT
Ga0208960_11187483	3300027649	Freshwater Lentic	MKNIRIIKENIDVSGIVKQLEQNPEDWGNVGRMKGTDRQDPHTRLVKSGVLQLVMGGISKPGEFIGDTEICVPTE
Ga0209355_11501191	3300027744	Freshwater Lake	MKNIRIIKENIDVSGIVKQLEQNPEDWGNVGRMKGIDRQDPHTRLVKSGVLQLVMGGISKPGEFIGDTEICVP
Ga0209189_14115381	3300027747	Freshwater Lake	MKNIRIIEKNIDVSKIREQLEQYPEDWGNASRIKGIDRQDPHSKLVTADVLQLVMG
Ga0209709_100655691	3300027779	Marine	MKNIKILQTNIDVSSIVDQLNQYPEDWGNVKRLKGIGRQDPHTKIVTSDVLQLV
Ga0209536_1011239623	3300027917	Marine Sediment	MKNIKIIETGIDVTPIVNQLELYKDDWGNAKRTKGSSRQDPHTKLVTSDVLQLVMGGVDSPDEFVGDT
Ga0315905_107638992	3300032092	Freshwater	MKNIRILKENIDVSGIVKQLEQNPEDWGNVGRMKGTDRQDPHTRLVKSGVLQLVMGGISKPGEFIGDTEICV
Ga0335396_103485812	3300032462	Freshwater	MKNIRIIKTGIDVSAIQAQLNAHPQDWGNVGRMKGTGKQDPHTKIVTSEVLQLVMGGVSSPN
Ga0334996_0358567_507_698	3300033994	Freshwater	MKNIRIIKENIDVSEIVKDLNNYPEDWGNVGRMKGTDRQDPHTKLVRSGVLQLVMGGISKPGEF
Ga0334979_0567846_2_202	3300033996	Freshwater	MKNIRIIKENIDVSGIVKQLESYPEDWGNVGRMKGTDRQDPHTRLVKSGVLQLVMGGISKPGEFIGD
Ga0334987_0511518_2_214	3300034061	Freshwater	MKNIRIIKENIDVSGIVKQLELHPEDWGNVGRMKGTDRQDPHTRLVKSGVLQLVMGGISKPGEFIGDTEIC
Ga0335030_0851940_1_162	3300034103	Freshwater	MKNIRIIKENIDVSGIVKQLEQHPEDWGNVGRMKGTDRQDPHTKLVKSGVLQLV
Ga0335056_0213308_1_210	3300034120	Freshwater	MKNIRIIKENIDVSGIVKQLEQHPEDWGNVGRMKGTDRQDPHTRLVKSGVLQLVMGGISKPGEFIGDTEI
Ga0335056_0458142_3_209	3300034120	Freshwater	MKNIRIIKENIDVSGIVKQLEQHPEDWGNVGRMKGTDRQDPHTRLVKSGVLQLVMGGISKPGEFIGDTE
Ga0335060_0255198_778_975	3300034122	Freshwater	MKNIRIIKENIDVSGIVKQLEQHPEDWGNVGRMKGTDRQDPHTRLVKSGVLQLVMGGISKPGEFIG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters