Metagenome / Metatranscriptome Family F086319

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086319
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	51 residues
Representative Sequence	MTKSEHLWAIGYDDMERAEQVRDEITRLGWDTHYLTLLDVAVVVRHPDGSFT
Number of Associated Samples	84
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.92 %
% of genes near scaffold ends (potentially truncated)	83.78 %
% of genes from short scaffolds (< 2000 bps)	80.18 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (81.081 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (26.126 % of family members)
Environment Ontology (ENVO)	Unclassified (37.838 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.550 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.00% β-sheet: 7.50% Coil/Unstructured: 72.50%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF04632	FUSC	13.51
PF02823	ATP-synt_DE_N	9.01
PF02321	OEP	3.60
PF01547	SBP_bac_1	1.80
PF05494	MlaC	1.80
PF07885	Ion_trans_2	1.80
PF16576	HlyD_D23	0.90
PF00274	Glycolytic	0.90
PF01740	STAS	0.90
PF08450	SGL	0.90
PF02446	Glyco_hydro_77	0.90
PF00497	SBP_bac_3	0.90
PF00196	GerE	0.90
PF13527	Acetyltransf_9	0.90
PF00582	Usp	0.90
PF09363	XFP_C	0.90
PF07992	Pyr_redox_2	0.90
PF06897	DUF1269	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG1289	Uncharacterized membrane protein YccC	Function unknown [S]	13.51
COG0355	FoF1-type ATP synthase, epsilon subunit	Energy production and conversion [C]	9.01
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	7.21
COG2854	Periplasmic subunit MlaC of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	1.80
COG1640	4-alpha-glucanotransferase	Carbohydrate transport and metabolism [G]	0.90
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.90
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.90
COG3588	Fructose-bisphosphate aldolase class 1	Carbohydrate transport and metabolism [G]	0.90
COG4803	Uncharacterized membrane protein	Function unknown [S]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.08 %
Unclassified	root	N/A	18.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.08 %
Unclassified	root	N/A	18.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.08 %
Unclassified	root	N/A	18.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.92 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	7.21 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.70 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.80 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.92 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4.50 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2.70 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.80 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.92 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	3.60 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.80 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1.80 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.92 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.60 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.80 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	1.80 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.92 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.60 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	1.80 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.80 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.92 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.60 %
Zavarzinella	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella	1.80 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.80 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.92 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.60 %
Zavarzinella formosa	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella → Zavarzinella formosa	1.80 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.80 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_101701922	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300001431\|F14TB_102125967	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300004114\|Ga0062593_100127609	All Organisms → cellular organisms → Bacteria	1871	Open in IMG/M
3300004633\|Ga0066395_10619930	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300005332\|Ga0066388_101172880	All Organisms → cellular organisms → Bacteria	1309	Open in IMG/M
3300005332\|Ga0066388_104324232	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300005343\|Ga0070687_101012126	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300005447\|Ga0066689_10976118	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300005468\|Ga0070707_100433364	All Organisms → cellular organisms → Bacteria	1275	Open in IMG/M
3300005549\|Ga0070704_100981361	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300005713\|Ga0066905_100417066	All Organisms → cellular organisms → Bacteria	1094	Open in IMG/M
3300005764\|Ga0066903_105504577	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300006804\|Ga0079221_10677673	Not Available	713	Open in IMG/M
3300006844\|Ga0075428_100309048	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1699	Open in IMG/M
3300006844\|Ga0075428_102278734	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300006845\|Ga0075421_102319097	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300006846\|Ga0075430_101158508	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300006846\|Ga0075430_101278291	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300006852\|Ga0075433_11380234	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300006852\|Ga0075433_11494729	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300006871\|Ga0075434_102555361	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300006880\|Ga0075429_100324880	Not Available	1346	Open in IMG/M
3300006880\|Ga0075429_101128951	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300009147\|Ga0114129_11088428	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300009162\|Ga0075423_12303508	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300009792\|Ga0126374_11586992	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300010043\|Ga0126380_10298408	All Organisms → cellular organisms → Bacteria → Proteobacteria	1145	Open in IMG/M
3300010046\|Ga0126384_10040484	All Organisms → cellular organisms → Bacteria	3154	Open in IMG/M
3300010047\|Ga0126382_10964660	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300010047\|Ga0126382_12127551	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300010116\|Ga0127466_1083489	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300010336\|Ga0134071_10591822	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300010358\|Ga0126370_10804760	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300010358\|Ga0126370_11709190	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300010360\|Ga0126372_11166729	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300010361\|Ga0126378_11509023	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	762	Open in IMG/M
3300010362\|Ga0126377_10174589	All Organisms → cellular organisms → Bacteria	2039	Open in IMG/M
3300010362\|Ga0126377_11124186	All Organisms → cellular organisms → Bacteria → Nitrospirae	855	Open in IMG/M
3300010362\|Ga0126377_11710216	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	704	Open in IMG/M
3300010362\|Ga0126377_11735138	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300010362\|Ga0126377_13127236	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300010366\|Ga0126379_10493561	All Organisms → cellular organisms → Bacteria	1294	Open in IMG/M
3300010366\|Ga0126379_10821049	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300010366\|Ga0126379_11705626	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300010366\|Ga0126379_13367412	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300010375\|Ga0105239_11218469	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300010376\|Ga0126381_102082378	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300010376\|Ga0126381_102638847	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300010398\|Ga0126383_10183838	All Organisms → cellular organisms → Bacteria	1989	Open in IMG/M
3300010398\|Ga0126383_11548572	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300010398\|Ga0126383_11874935	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300012038\|Ga0137431_1225718	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300012211\|Ga0137377_10459037	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300012362\|Ga0137361_11042429	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300012363\|Ga0137390_10049758	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4062	Open in IMG/M
3300012388\|Ga0134031_1002030	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300012927\|Ga0137416_10767735	All Organisms → cellular organisms → Bacteria	851	Open in IMG/M
3300012930\|Ga0137407_10112412	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2353	Open in IMG/M
3300012948\|Ga0126375_11779274	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300012957\|Ga0164303_10495714	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	780	Open in IMG/M
3300012957\|Ga0164303_11002377	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300012971\|Ga0126369_11055593	Not Available	901	Open in IMG/M
3300015264\|Ga0137403_10030002	All Organisms → cellular organisms → Bacteria	5756	Open in IMG/M
3300015264\|Ga0137403_10346503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1373	Open in IMG/M
3300015264\|Ga0137403_10458254	All Organisms → cellular organisms → Bacteria	1150	Open in IMG/M
3300016270\|Ga0182036_11016177	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300016319\|Ga0182033_10390098	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella → Zavarzinella formosa	1174	Open in IMG/M
3300016404\|Ga0182037_10770015	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300017659\|Ga0134083_10178089	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300017792\|Ga0163161_10289100	Not Available	1288	Open in IMG/M
3300017988\|Ga0181520_10470768	Not Available	895	Open in IMG/M
3300018072\|Ga0184635_10067705	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1392	Open in IMG/M
3300018081\|Ga0184625_10176870	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1117	Open in IMG/M
3300021560\|Ga0126371_10343883	All Organisms → cellular organisms → Bacteria	1625	Open in IMG/M
3300021560\|Ga0126371_10529840	All Organisms → cellular organisms → Bacteria	1327	Open in IMG/M
3300025922\|Ga0207646_10894560	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300025961\|Ga0207712_10662513	All Organisms → cellular organisms → Bacteria	908	Open in IMG/M
3300026088\|Ga0207641_11730806	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300027527\|Ga0209684_1042116	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300027873\|Ga0209814_10224534	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300027874\|Ga0209465_10010328	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4143	Open in IMG/M
3300027874\|Ga0209465_10435621	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300027909\|Ga0209382_11866039	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300031679\|Ga0318561_10036111	All Organisms → cellular organisms → Bacteria	2414	Open in IMG/M
3300031720\|Ga0307469_12344095	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300031724\|Ga0318500_10132537	All Organisms → cellular organisms → Bacteria	1161	Open in IMG/M
3300031765\|Ga0318554_10794166	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300031833\|Ga0310917_10806812	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300031946\|Ga0310910_11401822	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella → Zavarzinella formosa	538	Open in IMG/M
3300032059\|Ga0318533_10552649	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300032180\|Ga0307471_102121760	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300032205\|Ga0307472_102127229	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300032261\|Ga0306920_104429731	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300032783\|Ga0335079_10859216	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300032955\|Ga0335076_11424808	Not Available	579	Open in IMG/M
3300033004\|Ga0335084_11325378	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.48%
Host-Associated	Host-Associated	22.52%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.87%
Plants	Host-Associated → Plants	22.52%
Aquatic	Environmental → Aquatic	3.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.60%
Sediment	Environmental → Aquatic → Sediment	2.70%
Freshwater	Environmental → Aquatic → Freshwater	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.12%
Loam	Environmental → Terrestrial → Soil → Loam	12.61%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.70%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.80%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.12%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.41%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.11%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.70%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.80%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	26.13%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	14.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.11%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.21%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.60%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.60%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.70%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.80%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.90%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.90%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.90%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2209111006	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010116	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012038	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT800_2	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012388	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2213878805	2209111006	Arabidopsis Rhizosphere	MTKSGNLWAIGYDNMERADQVRDEIINLGWHKHYLQLNDVA
AF_2010_repII_A01DRAFT_10390681	3300000580	Forest Soil	MMTKSGHLWAVGYDDMGRADQVRDEIINLGWNKQYLELDDVA
JGI1027J12803_1017019221	3300000955	Soil	MRQSEHLWAIGYNDMGRAEQVRDEFIRLGWETHYLILLDIAVVVRHPDGSFTCNREPVPA
F14TB_1021259671	3300001431	Soil	MTNSGHLWAIGYDDMGRAHQVRDEITSLGWVKHKLILTDVAVAVRQPDGSFMLDREPF
Ga0062593_1001276093	3300004114	Soil	MDETSHLWAIGYDDMERAGQVKDEIIKIGWDEPYLILSALAVVVR
Ga0066395_106199301	3300004633	Tropical Forest Soil	MTATSNLWAIGYDDVDRVHQVRDQIVSLGWDKHFLILSDLAVVVRHPDGSFTFDRKPLPVAP
Ga0066388_1011728801	3300005332	Tropical Forest Soil	MTTAAHLWAIGYDNRERADQVRDEITRLGWDKHYLLLLDVAVVVRHSDGEVTFDHKPFP
Ga0066388_1017177662	3300005332	Tropical Forest Soil	MTKSGHLWAVGYADMGRADQVRDEIINLGWNKQYLELDDESIHDHVV
Ga0066388_1043242322	3300005332	Tropical Forest Soil	MTKLGNLWAVGYDNMERADQVRDKIIELGWGSTQYLMLDDVAVVVRH
Ga0070687_1010121263	3300005343	Switchgrass Rhizosphere	MTQSEHLWAIGYDDMERAEQVRDEIIRLGWDTPYLDLLDVAVVVRHPDGSFTC
Ga0070671_1020121151	3300005355	Switchgrass Rhizosphere	MAACGNLWAVGYDTVERANQVCEEIISLGWDKHYLFLDDVAVV
Ga0066689_109761181	3300005447	Soil	MTQSEHLWAIGYDDMERAEQVRDEIVRLGWDTPYLTLLDVAVVVRHPDGSFTCNRERF
Ga0070707_1004333641	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTAAAHLWAVGFDDTQRADQVREEITRLGWDEHYLCLLDVAVVVRHSDGSFAIDREPF
Ga0070704_1009813611	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MTKSEHLWAIGYDDMERANQVRDEIVSLGWDKHYLILDDIAVVVRHPDGSFTCN
Ga0066905_1004170662	3300005713	Tropical Forest Soil	MKKSEHLWAIGYDDMGRAEQVRDEIIRLGWDTHYLILLDIAVVVRHPDGSFTCNREPV
Ga0066903_1055045772	3300005764	Tropical Forest Soil	MTQSEHLWAIGYDDMGRAEQVREEIIRLGWDTHYLDLLDVAVVVRHPDGSFTCNRE
Ga0081539_1000393419	3300005985	Tabebuia Heterophylla Rhizosphere	MTQSEHLWAIGYDDMERAEQVREEIIRLGWHTHYLDLLDVAVVV
Ga0079221_106776731	3300006804	Agricultural Soil	MTKSSHLWAIGYDNVERANQVRDEIIRLGWHKDYLILDDVAVVVRHP
Ga0075428_1003090481	3300006844	Populus Rhizosphere	MTKSGNLWAIGYDDMGRANQVRDEIVRLGWDKHYLLLDDVAVVVRHPDGSF
Ga0075428_1020308781	3300006844	Populus Rhizosphere	MTKSEHLWAIGYDDLGGAEQLRDEIIRLGWDTHYLTLLDVAVVV
Ga0075428_1022787342	3300006844	Populus Rhizosphere	MTTSGHLWAIGYQDMTQAATVHDKVVSLGWDKHYLTLEDIAVVVRHPDGSF
Ga0075421_1023190972	3300006845	Populus Rhizosphere	MTKSGNLWAIGYDDMGRANQVRDEIVSLGWHKHYLLLNDVAVVVRHPDGSFTL
Ga0075430_1011585082	3300006846	Populus Rhizosphere	MTKSEHLWAIGYDDMKRAEQVRDEIIRLGWDTHYLTLLDVAVVVRHPDGSFTCNRERFPT
Ga0075430_1012782911	3300006846	Populus Rhizosphere	MTKAEHLWAIGYDDMARAEQVRDEIIRLGWATHYLDLLDVAVVVRHPDGSFTCNRE
Ga0075433_113802341	3300006852	Populus Rhizosphere	MTKAEHLWAIGYDDMARAEQVRDEIIRLGWATHYLDLLDVAVVVRHPDGSFTCNR
Ga0075433_114947291	3300006852	Populus Rhizosphere	MKRYGHLWAIGYDDMERANQVRGEIEFLGWNKNYLALDDVAVVIRH
Ga0075434_1025553611	3300006871	Populus Rhizosphere	MTKSGNLWAIGYDDMGRANQIRDEIVSLGWHKHYLLLNDVAVVVRHPDG
Ga0075429_1003248802	3300006880	Populus Rhizosphere	MTKSEHLWAIGYDNMERAEQVREEIIRLGWDTHYLDLLDVAVVVRHPDGSFTCNRERFP
Ga0075429_1011289511	3300006880	Populus Rhizosphere	MTKSGNLWAIGYDDIGRANQVCDEIISLGWDKHYLELNDVAVVVRHPDGSFT
Ga0105245_124158171	3300009098	Miscanthus Rhizosphere	MTKSGNLWAIGYDNMERADQVRDEIINLGWHKHYLQLDDV
Ga0114129_110884281	3300009147	Populus Rhizosphere	MTKSGNLWAIGYDDMGRANQVRDEIVRLGWDKHYLLLDDVAVVVR
Ga0075423_119191241	3300009162	Populus Rhizosphere	MSRETGAGHLWAVGYADMDRASQVKDEIIRIGWGEPYLLLSDVAVVVRHPDGSFT
Ga0075423_123035082	3300009162	Populus Rhizosphere	MKRYEHLWAIGYDDMERANQVRGEIEFLGWNKNYLALDDVAVVIRHPDGSFTF
Ga0126374_115869921	3300009792	Tropical Forest Soil	MTKSGNLWAVGYDNIERANQVREEIISLGWDKHYLILQDIAVVVRHPDGSFTLNR
Ga0126380_102984083	3300010043	Tropical Forest Soil	MGEESHLWAIAYDDVGRADEVRDEIKRLGWDKHHLILVDVAVVVRHPDGTFTFNHE
Ga0126384_100404843	3300010046	Tropical Forest Soil	MTTTSNLWAIGYDDTDRVYQVRDQIVSLGWDKHFLILSDLAVVVRHADG
Ga0126382_109646602	3300010047	Tropical Forest Soil	MTKPEHLWAIGYDDMGRAEQVRDEIIRLGWDTHYLDLLDVAVVVRHP
Ga0126382_121275511	3300010047	Tropical Forest Soil	MTPSEHLWAIGYDDMERAEQVRDEIIRLGWETHYLTLLDVAVVVRHPDGSF
Ga0127466_10834891	3300010116	Grasslands Soil	MTQSEHLWAIGYDDMERTEQVRDEIIRLGWDTPYLTLLDVAVVVRHPDGSF
Ga0134071_105918222	3300010336	Grasslands Soil	MTKPGNLWAVGYDDMGRANQVRDEIISLGWDKHCLLLDDVAVVVRHSDGSFTFDR
Ga0126370_108047601	3300010358	Tropical Forest Soil	MTKSGNLWAVGYDNIERANQVREEIISLGWDKHYLILQDIAVVVRHPDGS
Ga0126370_117091902	3300010358	Tropical Forest Soil	MTTTSNLWAIGYDDMDRVHQVRDQIVSLGWDKHFLILSDLAVVVRHPDGSFTFDRKRLPVAPN
Ga0126372_111667292	3300010360	Tropical Forest Soil	MTQSEHLWATGYDDMERAAQVRDEIIRLGWETHYLTLLDVAVVVRHPDGSFTCNR
Ga0126378_115090232	3300010361	Tropical Forest Soil	MTKSEHLWAIGYDDMGRAEQVRDEIISLGWDTHYLDLLDVAVVVRHPD
Ga0126377_101745891	3300010362	Tropical Forest Soil	MTQSEHLWAIGYDDMERAEQVRDEIIRLGWDTHYLTLLDVAVVVRHPDG
Ga0126377_111241861	3300010362	Tropical Forest Soil	MTKSEHLWAIGYDDMERAEQVRDEIVRLGWDTPYLALLDVAVVVRHPDGSFTCNRERFPT
Ga0126377_117102162	3300010362	Tropical Forest Soil	MTKSEHLWANGYDDMGRAEQVREEIIRLGWDTHYLDLLDVAVVVRHPDGSFTCNRE
Ga0126377_117351381	3300010362	Tropical Forest Soil	MTQSAHLWAIGYDDMERAEQVRNEIIRLGWDTPYLTLLDVAVVVRHPDGSFTCN
Ga0126377_131272361	3300010362	Tropical Forest Soil	MTKSEHLWAIGYDDMERAEQVRDEITRLGWDTHYLTLLDVAVVVRHPDGSFT
Ga0126379_104935612	3300010366	Tropical Forest Soil	MTTASNLWAIGYDDMDRVHQVRDQIVSLGWDKHFLILSDLAVVVRHPDGSFTFDRKRLPV
Ga0126379_108210493	3300010366	Tropical Forest Soil	MTKSGNLWAVGYDNIERANQVREEIISLGWDKHYLILQDIAVVVRHPDGSFTLNRE
Ga0126379_117056262	3300010366	Tropical Forest Soil	MTQAEHLWAIGYDDMERAEQVRDEIIRLGWHTPYLTLLDVAVVVRHPDGSFTCN
Ga0126379_133674121	3300010366	Tropical Forest Soil	MTKSEHLWAIGYDDMERAEQVHDEIIRLGWETHYLTLLDVAVVVRHPDG
Ga0105239_112184692	3300010375	Corn Rhizosphere	MKDTAMSEQSHLWAIAYDDVGRADEVCAEIKRLGWDTHYLILAAVAVVVRHPDGSFT
Ga0126381_1020823781	3300010376	Tropical Forest Soil	MTKSGNLWAVGYGNIERANQVREEIISLGWDKHYLILQDIAVVVRHP
Ga0126381_1026388472	3300010376	Tropical Forest Soil	MTATSNLWAIGYDDVDRVHQVRDQIVSLGWDKHFLILSDLAVVVRHPDGSFTFDRKPL
Ga0126383_101838382	3300010398	Tropical Forest Soil	MTTTSNLWAIGYDDMDRGHQVRDQIVSLGWDKHFLILSDLAVVVRHPDG
Ga0126383_115485722	3300010398	Tropical Forest Soil	MKTSGHLWAIGYADMKRAAEVRDEIVKLGWDKHDLILEDVAVVVRHPDGSFAV
Ga0126383_118749352	3300010398	Tropical Forest Soil	MTQAEHLWAIGYDDMERAEQVRDEIIRLGWHTHYLTLLDVAVVVRHPDGSFTC
Ga0126383_136563761	3300010398	Tropical Forest Soil	MMTKSGHLWAVGYADMGRADQVRDEIINVGWNKQYLELDDESIHGS
Ga0137431_12257182	3300012038	Soil	MTKSGNLWAIGYDDMERANQVRDEISGLGWDKHYLLLQDIAVVVRHEDGSFTL
Ga0137377_104590371	3300012211	Vadose Zone Soil	MTKSEHLWAIGYDDMGRAEQVREEIIRLGWNTHYLDLLDVAVVV
Ga0137361_110424292	3300012362	Vadose Zone Soil	MTKSEHLWAIGYDDMGRAEQVRGEIIRLGWDTHYLNLLDVAVVVRHP
Ga0137390_100497585	3300012363	Vadose Zone Soil	MKNGEHLWAVAYDDMERANQVRDEIVRLGWDEQYLILNDVAVVVRHLDGSF
Ga0134031_10020301	3300012388	Grasslands Soil	MTQSEHLWAIGYDDMKRAEQVRDEIIRLGWDTPYLTLLDVAVVVRHPDGSFTCNRERFPT
Ga0137416_107677352	3300012927	Vadose Zone Soil	MTKSEHLWAIGYDDMERAEQVRDEIIRLGWHTPFFALLDVAVVVRHPDGSFTCNRERF
Ga0137407_101124121	3300012930	Vadose Zone Soil	MTKSEHLWAIGYDDMERAEQVRDEIIRLGWATPYLDLLDVAVVVRHPDGSFTCNRARFP
Ga0126375_111110552	3300012948	Tropical Forest Soil	MTKSGHLWAVGYDDMGRADQVRDEIINLGWNKQYLELDD
Ga0126375_117792742	3300012948	Tropical Forest Soil	MTTASNLWAIGYDDMDRGHQVRDQIVSLGWDKHFLILSDLAVVVRHPDG
Ga0164303_104957141	3300012957	Soil	MTKSGNLWAIGYDNMERAYQVRDEIINLGWHKHYLQLDDVAVVVRR
Ga0164303_110023771	3300012957	Soil	MTKAEHLWAIGYDDMERAEQVREEIIRLGWDTHYLGLLDIAVVVRHPD
Ga0126369_110555932	3300012971	Tropical Forest Soil	MTKSEHLWAIEYDDMERAEQVRDEIIRLGWDTHYLTLLDIAVVVRHPDG
Ga0137403_100300021	3300015264	Vadose Zone Soil	MTKSEHLWAIGYDDMERAEQVRDEIVRLGWDTPYLTLLDVAVVVRHPDGSFTC
Ga0137403_103465031	3300015264	Vadose Zone Soil	MTQSEHLWAIGYDDMERAEQVRDEIIRLGWDTPYLTLLDVAVVVRHPDGSFTC
Ga0137403_104582542	3300015264	Vadose Zone Soil	MSENGHLWAIAYDDVGRADQVRDEIKRLGWDKHYLILVDVAVVVRHPDGSLTFNHGCRFRKF*
Ga0182036_110161771	3300016270	Soil	MTKSAHLWAIGYDNIARADQVRDKVIELGWGTTHYLMLDDVAVVVRHPD
Ga0182033_103900981	3300016319	Soil	MTKFGNLWAIGYDDMARADEVRKEITGVGSKHFLIVADLAVVVRHHDGSFTDAASC
Ga0182037_107700151	3300016404	Soil	MTQSEHLWAIGYDDMGRAEQVRDEIIKLGWDTHYLTLLDVAVVVRHPDGSFT
Ga0134083_101780892	3300017659	Grasslands Soil	MTKSGNLWAIGYDDMRRANQVRDEIINLGWHKHYLILDDVAMIVRHPDGSF
Ga0163161_102891001	3300017792	Switchgrass Rhizosphere	MTKSEHLWAIGYDDMERAEQVRDEIIRLGWHTPYFALLDVAVVV
Ga0187776_104195373	3300017966	Tropical Peatland	MTKSAHLWAIGYDNIARADQVRDKIIELGWGSKHYLMLDDVAV
Ga0181520_104707681	3300017988	Bog	MAELGNLWAIGYDDTGRADEVREEVVRLGWNRPYLILLDVAVVV
Ga0184635_100677051	3300018072	Groundwater Sediment	MTKSGNLWAIGYDDMGRADQVRDEIISLGWDKHYLLLDDVAVVVRHPDGSFT
Ga0184625_101768701	3300018081	Groundwater Sediment	MTKSGNLWAIGYDDMGRADQVRDEIISLGWDKHYLLLDDVAVVVRHPD
Ga0126371_103438832	3300021560	Tropical Forest Soil	MKTSGHLWAIGYADMKRAAEVRDEIVKLGWDKRDLILEDVAVVVRHPDGSFAVDR
Ga0126371_105298401	3300021560	Tropical Forest Soil	MTTTSNLWAIGYDDMDRVYQVRDQIVSLGWDKHFLILSDLAVVVRHPDG
Ga0207646_108945602	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MTKSEHLWAIGYDDMGRAEQVRDEIIRLGWDTHYMILLDIAVVVRHPDGSF
Ga0207669_109362952	3300025937	Miscanthus Rhizosphere	MTKSGNLWAIGYDNMERADQVRDEIINLGWHKHYLQLND
Ga0207712_106625131	3300025961	Switchgrass Rhizosphere	MTKSEHLWAIGYDDMERANQVRDEIVSLGWDKHYLILDDVAVVVRHPDG
Ga0207641_117308061	3300026088	Switchgrass Rhizosphere	MTKSGNLWAIGYDNMERADQVRDEIINIGWHKHYLQLDDVAVVVRHL
Ga0209684_10421162	3300027527	Tropical Forest Soil	MTKPEHLWAIGYDDMERAEQVRDEIVRLGWDTHYLTLLDVAVVVRHPDGSLVVF
Ga0209814_102245341	3300027873	Populus Rhizosphere	MTKSEHLWAIGYDNMERAEQVREEIIRLGWDTHYLDLLDIAVVVRHP
Ga0209465_100103285	3300027874	Tropical Forest Soil	MTTTSCLWAIGYDDTDRVHQVRDQIASLGWDKHFLILSDLAVVVRHPDGSFTFDRKPLPV
Ga0209465_104356211	3300027874	Tropical Forest Soil	MTATSNLWAIGYDDVDRVHQVRDQIVSLGWDKHFLILSDLAVVVRHPDGSFTFDRKPLPV
Ga0209382_118660391	3300027909	Populus Rhizosphere	MAKSGNLWAVGYDDIGRANQVCDEIISLGWDKHYLELNDVAVIVRH
Ga0318534_100289811	3300031544	Soil	MTNSGNLWAIGYADTERADEVCDEIINLGWDKHRLILDDVAV
Ga0318561_100361113	3300031679	Soil	MTTTSCLWAIGYDDMDRVHQVRDQIVSLGWDKHFLILSDLAVVVRHPDGSFT
Ga0307469_123440951	3300031720	Hardwood Forest Soil	MTQSEHLWAIGYDDMKRAEQVRDEIIRLGWDTPYLTLLDVAVVVRHPDGSFTCNRER
Ga0318500_101325372	3300031724	Soil	MTTTSCLWAIGYDDMDRVHQVRDQIVSLGWDKHFLILSDLAVVVRHPDGSFTFDRK
Ga0318554_107941661	3300031765	Soil	MTTTSCLWAIGYDDMDRVHQVRDQIVSLGWDKHFLILSDLAVVVRHPDGSFTFDRKRLPI
Ga0310917_108068122	3300031833	Soil	MAKDGHLWAIGYDNVARADQVREEIIHLGWGTTHYLMLDDIAVVVRHPDGS
Ga0310910_114018221	3300031946	Soil	MTKFGNLWAIGYDDMARADEVRKEITGVGSKHFLIVADLAVVVRHHDGSFTDAA
Ga0310909_102827532	3300031947	Soil	MAKDGHLWAIGYDNVARADQVREEIIHLGWGTTHYLML
Ga0318533_105526491	3300032059	Soil	MSETSHLWAIGYDNVGRADQVREEIKRLGWDRQYLILVDMAVVVRHPDGSFTVNQERFP
Ga0307471_1021217601	3300032180	Hardwood Forest Soil	MKRSGHLWAIGYDDMERANQVRDTITNIGWGKPYLILEDVAVVVRHRD
Ga0307472_1021272291	3300032205	Hardwood Forest Soil	MTSSRHLWAIGYDDMGRAHQVREEITSLGWVRSSLLLEDVAVAVRQ
Ga0306920_1044297311	3300032261	Soil	MKTSEHLWAVAYDNMERANQVRDEIVRLGWNKNRLILDDVAVVVRRP
Ga0335079_108592162	3300032783	Soil	MTKSGNLWAIGYDNMERADQVREEIISLGWGTTHYLMLDDVAVVVRHP
Ga0335069_102719421	3300032893	Soil	MTKSGNLWAIGYDNMERADQVREEIISLGWGTTHYLMLDD
Ga0335076_114248082	3300032955	Soil	MSEFSHLWAIGYDDVGRADEVREEIKRLWDTHNLILVDIAVVVRRADGSFTFNQE
Ga0335084_113253781	3300033004	Soil	MTISSHLWAIGYDDVGRANQVRDEIAQLGWDRHYLILEDMAVVVRHADG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086319

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences