NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F086272

Metagenome / Metatranscriptome Family F086272

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F086272
Family Type Metagenome / Metatranscriptome
Number of Sequences 111
Average Sequence Length 51 residues
Representative Sequence MTHGSVQRAIPAPYALPVGFAMFLAVGTVAAALHGRLPATGVLIACAAV
Number of Associated Samples 99
Number of Associated Scaffolds 111

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 43.08 %
% of genes near scaffold ends (potentially truncated) 57.66 %
% of genes from short scaffolds (< 2000 bps) 52.25 %
Associated GOLD sequencing projects 96
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (94.595 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(29.730 % of family members)
Environment Ontology (ENVO) Unclassified
(29.730 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(50.450 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 40.26%    β-sheet: 0.00%    Coil/Unstructured: 59.74%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.43
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 111 Family Scaffolds
PF13520AA_permease_2 34.23
PF03473MOSC 0.90
PF13493DUF4118 0.90



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A94.59 %
All OrganismsrootAll Organisms5.41 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004082|Ga0062384_100875324Not Available634Open in IMG/M
3300005610|Ga0070763_10475894Not Available711Open in IMG/M
3300009090|Ga0099827_10019779All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella panacisegetis4649Open in IMG/M
3300009698|Ga0116216_10335547Not Available920Open in IMG/M
3300009698|Ga0116216_10625428All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii648Open in IMG/M
3300009824|Ga0116219_10438488Not Available726Open in IMG/M
3300010048|Ga0126373_12955853Not Available530Open in IMG/M
3300010343|Ga0074044_10676508Not Available674Open in IMG/M
3300010876|Ga0126361_11314920Not Available510Open in IMG/M
3300016270|Ga0182036_10445854Not Available1017Open in IMG/M
3300016294|Ga0182041_11614924Not Available599Open in IMG/M
3300016404|Ga0182037_11223605Not Available660Open in IMG/M
3300016422|Ga0182039_10922247Not Available780Open in IMG/M
3300016445|Ga0182038_10898183Not Available781Open in IMG/M
3300017932|Ga0187814_10308820Not Available606Open in IMG/M
3300018038|Ga0187855_10482690Not Available722Open in IMG/M
3300019260|Ga0181506_1309473Not Available777Open in IMG/M
3300020579|Ga0210407_11251831Not Available556Open in IMG/M
3300020581|Ga0210399_11130690Not Available625Open in IMG/M
3300021180|Ga0210396_10085993All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2851Open in IMG/M
3300021403|Ga0210397_10032541All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3263Open in IMG/M
3300021405|Ga0210387_10633378All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia949Open in IMG/M
3300021407|Ga0210383_11694322Not Available518Open in IMG/M
3300021560|Ga0126371_13389069Not Available538Open in IMG/M
3300026999|Ga0207949_1018102Not Available643Open in IMG/M
3300027066|Ga0208236_1004602Not Available835Open in IMG/M
3300027080|Ga0208237_1018336Not Available1050Open in IMG/M
3300027090|Ga0208604_1001698Not Available2086Open in IMG/M
3300027696|Ga0208696_1159963Not Available726Open in IMG/M
3300027767|Ga0209655_10089309Not Available1025Open in IMG/M
3300027829|Ga0209773_10176127Not Available893Open in IMG/M
3300027857|Ga0209166_10195961All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1088Open in IMG/M
3300027867|Ga0209167_10584998Not Available611Open in IMG/M
3300027908|Ga0209006_10124930Not Available2270Open in IMG/M
3300028808|Ga0302228_10181185Not Available964Open in IMG/M
3300028906|Ga0308309_11139655Not Available673Open in IMG/M
3300029910|Ga0311369_10416139Not Available1163Open in IMG/M
3300031234|Ga0302325_11494816Not Available870Open in IMG/M
3300031543|Ga0318516_10353085Not Available848Open in IMG/M
3300031549|Ga0318571_10138823Not Available830Open in IMG/M
3300031561|Ga0318528_10565555Not Available610Open in IMG/M
3300031564|Ga0318573_10275348Not Available899Open in IMG/M
3300031680|Ga0318574_10529190Not Available691Open in IMG/M
3300031723|Ga0318493_10652587Not Available588Open in IMG/M
3300031724|Ga0318500_10459891Not Available637Open in IMG/M
3300031753|Ga0307477_10542680Not Available787Open in IMG/M
3300031771|Ga0318546_10663263Not Available734Open in IMG/M
3300031771|Ga0318546_11273631Not Available516Open in IMG/M
3300031778|Ga0318498_10006769Not Available4437Open in IMG/M
3300031782|Ga0318552_10402026Not Available698Open in IMG/M
3300031796|Ga0318576_10318472Not Available735Open in IMG/M
3300031805|Ga0318497_10798695Not Available529Open in IMG/M
3300031819|Ga0318568_10419827Not Available833Open in IMG/M
3300031910|Ga0306923_11254718Not Available789Open in IMG/M
3300032025|Ga0318507_10493650Not Available533Open in IMG/M
3300032052|Ga0318506_10022535Not Available2322Open in IMG/M
3300032052|Ga0318506_10315699Not Available693Open in IMG/M
3300032052|Ga0318506_10464945Not Available561Open in IMG/M
3300032059|Ga0318533_11381113Not Available514Open in IMG/M
3300032066|Ga0318514_10556356Not Available611Open in IMG/M
3300032770|Ga0335085_11158491Not Available824Open in IMG/M
3300032896|Ga0335075_10629219Not Available1053Open in IMG/M
3300033158|Ga0335077_11233035Not Available730Open in IMG/M
3300033289|Ga0310914_11129610Not Available685Open in IMG/M
3300034817|Ga0373948_0076549Not Available757Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil29.73%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa17.12%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil8.11%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil7.21%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil6.31%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil5.41%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil4.50%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.70%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.70%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland1.80%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.80%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.80%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.90%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland0.90%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.90%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.90%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.90%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.90%
Exposed RockEnvironmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock0.90%
Termite GutHost-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut0.90%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.90%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.90%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.90%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil0.90%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300004082Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300009011Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaGHost-AssociatedOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009520Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaGEnvironmentalOpen in IMG/M
3300009521Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaGEnvironmentalOpen in IMG/M
3300009665Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10EnvironmentalOpen in IMG/M
3300009672Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaGEnvironmentalOpen in IMG/M
3300009683Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaGEnvironmentalOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300009824Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaGEnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010162Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)Host-AssociatedOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010876Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012498Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.yng.090410Host-AssociatedOpen in IMG/M
3300014165Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaGEnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017932Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4EnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018038Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10EnvironmentalOpen in IMG/M
3300019260Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021374Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08EnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300026999Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF044 (SPAdes)EnvironmentalOpen in IMG/M
3300027066Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF005 (SPAdes)EnvironmentalOpen in IMG/M
3300027080Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF009 (SPAdes)EnvironmentalOpen in IMG/M
3300027090Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF016 (SPAdes)EnvironmentalOpen in IMG/M
3300027590Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027609Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027696Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027698Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027767Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027829Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027857Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300028742Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3EnvironmentalOpen in IMG/M
3300028789Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3EnvironmentalOpen in IMG/M
3300028801Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3EnvironmentalOpen in IMG/M
3300028808Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300029910III_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300029951III_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030013Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3EnvironmentalOpen in IMG/M
3300030053Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2EnvironmentalOpen in IMG/M
3300030399II_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300030524II_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300031028Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2EnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031549Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031723Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23EnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031778Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24EnvironmentalOpen in IMG/M
3300031782Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031805Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300032025Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20EnvironmentalOpen in IMG/M
3300032052Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19EnvironmentalOpen in IMG/M
3300032054Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032066Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032896Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4EnvironmentalOpen in IMG/M
3300032954Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2EnvironmentalOpen in IMG/M
3300032955Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M
3300034817Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12635J15846_1053630823300001593Forest SoilMTLRQGLPTIPAPYALPVSFAMFLAVGTVAAALHGHLPATGVLIACATIACVT
Ga0062384_10087532413300004082Bog Forest SoilMTLGQLQRGIPAPFALPVGFAAFLAVGTTAAALHGRLDATGVLITCAAVAGAM
Ga0062384_10148272113300004082Bog Forest SoilMSHGPAQRAIPAPYALPVGFAMLLAVGTVAAGLHGRLAATG
Ga0062389_10423365923300004092Bog Forest SoilMSHGPAQRAIPAPYALPVGFAMLLAVGTVAAGLHGRLAATGVLIAC
Ga0070763_1047589413300005610SoilMTLGQLQRGIPAPFALPVGFAAFLAAGTTAAALHGRLDATGVLIACAA
Ga0105251_1025780513300009011Switchgrass RhizosphereMSYRLGSRAAPAPYALPAGFAMFLAVGTVAAALHGRLPAGGVLIACAFVAFAVS
Ga0099827_1001977913300009090Vadose Zone SoilMTYARLRLARLGDPVRRGFPAPYALPAAFAALFVVGTVAAGLHGRFPATGVLIACAVIVA
Ga0116214_137403023300009520Peatlands SoilMRHGPAQRAIPAPYALPVGFAMFLAVGTVAAGLHGRLPATGVLIACATVAGVVSFAA
Ga0116222_145671723300009521Peatlands SoilMRYGPPQRAIPAPYALPVGFAMFLAVGTVAAGLHGRLPATGVLIACATVAGVVSF
Ga0116135_115857913300009665PeatlandMTLRQAPRTIPAPYALPVSFAMYLAVGTVAAALGGRLGATGVLVACAAIAAVMS
Ga0116215_119023023300009672Peatlands SoilMIHGPAQRAIPAPYALPVGFAMFLAVGTVAAGLHGRLPATGVLIAC
Ga0116215_136311723300009672Peatlands SoilMMIHGSVQRAIPAPYALPVGFAMFLAVGTVAAGLHGRLPATGVLIAC
Ga0116224_1060125613300009683Peatlands SoilMMIHGSVQRAIPAPYALPVGFAMFLAVGTVAAGLHGRLPATGVLIA
Ga0116216_1033554723300009698Peatlands SoilMRHGPPQHAIPAPYALPVGFAMFLAVGTVAAGLHGRLPATGVLIACAAIAGAMSFAA
Ga0116216_1062542813300009698Peatlands SoilRPVRLRLVRLGDPVRRGLPAPYALPVAFAALFLIGTLAAGLHGRLPATGVLIAAAVVVG*
Ga0116219_1043848823300009824Peatlands SoilMMTLGYKQRGMPAPFALPAGFAAFLVVGTVAAALHGRLDASGVLIA
Ga0126380_1215202723300010043Tropical Forest SoilMTHARGFPAPYALPVAFAALFAIGTVAAGFHGRLPDVGVLAACAVV
Ga0126373_1295585323300010048Tropical Forest SoilMRILGPRQRGIPAPYALPVGFATFLVVGTVAAALHGRLDAAGVLIACAAVAGAMSFVAEP
Ga0131853_1142613513300010162Termite GutMTHDLGRRAIPAPYALPVGFAMFLAVGTVAAALHGRLTATGVLIACAVIA
Ga0074044_1067650823300010343Bog Forest SoilMTPGLGQRAIPAPYALPVSFAMFLAVGTVAAALHGHLNATGVLICCAVVVGALAAAAEP
Ga0126361_1131492013300010876Boreal Forest SoilMTRFGYRAIPAPFALPVSFAMFLAVGTVAAALHGGLPATGVLAACA
Ga0137388_1014615213300012189Vadose Zone SoilMTHGSVQRAIPAPYALPVGFAMFLAVGTVAAALHGRLPATGVLIA
Ga0157345_105813813300012498Arabidopsis RhizosphereMSYRLGSRAAPAPYALPAGFAMFLAVGTVAAALHGRLPAGGVLIACAFVAFAVSFA
Ga0181523_1049728813300014165BogMIHGSVQRAIPAPYALPVGFAMFLAVGTVAAGLHGRLPATGVLI
Ga0182036_1044585423300016270SoilMRILGPRQRGIPAPYALPAGFAAFLAVGTVAAVLHGRLNAAGVLIAC
Ga0182041_1161492423300016294SoilMRILGPRQRGIPAPFALPVGFAVFLAVGTMAAALHGRLDAAGVLVACAAAA
Ga0182037_1122360513300016404SoilMRILGHPQRGIPAPYALPVGFAAFLLVGTVAAALHGRLDATGVLIACAAVAGAMSFVAEPIA
Ga0182039_1092224713300016422SoilMRILGYRQHGIPAPYALPVGFAAFLLVGTVAAALHGRLDATGVLI
Ga0182038_1089818313300016445SoilMTHHLRQRPVPAPYVLPAGFAAFLAVGTVAAALHGRLDAAGVLIACA
Ga0187814_1030882013300017932Freshwater SedimentMMTLGYKQRGVPAPFALPVGFAAFLAVGTVAAALHGRLDAAAVLVA
Ga0187782_1139266523300017975Tropical PeatlandMTHDLGQRAVPAPYALPAGFAMFLAVGTVAAGLHGRLPATGVLIACAVIAGL
Ga0187855_1048269013300018038PeatlandMRVRHPQRGIPAPYALPVGFAAFLAVGTVAAALHGRLDATGVLIACAA
Ga0181506_130947323300019260PeatlandMRLGHPQRGIPAPYALPVGFAAFLAVGTVAAALHGRLDATGVLIACAVVAGAMS
Ga0210407_1125183113300020579SoilMRLGHPASLAAYGGKRGIPAPYALPVGFAAFLAVGTVAAALHGHLDGTAVL
Ga0210399_1113069013300020581SoilMRLGHPASLAAYGGGQRGVPAPYALPVGFAAFLAMGTVAAALHGRLDATGVL
Ga0210396_1008599323300021180SoilMRILDHPQRGIPAPYALPVGFAAFLAAGTVAAALHGRLDATGVL
Ga0213881_1018993823300021374Exposed RockMSHILRPWPVPAPYALPAGFAMFLAVGTVAAGLHGHLGAAGVLVACAAV
Ga0210397_1003254113300021403SoilMRILDHPQRGIPAPYALPAGFAVFLAVGTVAAALHGRLDATGVLI
Ga0210387_1063337823300021405SoilMNHGLGQRAIPAPYALPVGFAMFLVVGTVAAGLHGRLSATGVLIACATVAGVVSFAA
Ga0210383_1169432223300021407SoilMMTFGLRQRGIPAPYALPVGFAAFLVVGTVAAVLHGRLDATGVLIACAAVAGAM
Ga0126371_1338906913300021560Tropical Forest SoilMRILGPRQRGIPAPYALPVGFAAFLAVGTVAAVLHGRLDAAGVLIACALVAGA
Ga0207949_101810223300026999Forest SoilMRILGHPASLAACGGGQRGIPAPYALPVGFAALLAVGTVAAALHGRLDATGVLIACTVV
Ga0208236_100460213300027066Forest SoilMNLGYKQRGLPAPFALPVGFAAFLATGTVAAALHGRLPATGVLIICAAVAGGM
Ga0208237_101833613300027080Forest SoilMRILDHPQRGIPAPYALPAGFAVFLAVGTVAAALHGRLDATGVLIACTVVAGAV
Ga0208604_100169813300027090Forest SoilMRLGHPASLAAYGGKRGIPAPYALPVGFAAFLAVGTVAAALHGHLDGTGVLIACTVVAGAVSFAAE
Ga0209116_109611113300027590Forest SoilMNHSLGQRAIPAPYALPVGFAMFLAVGTVAAVLHGRLTATGVLIACAA
Ga0209221_109054423300027609Forest SoilMNNSLGQRAIPAPYALPVGFAVFLAVGTVAAALHGHLTATGALIACAVV
Ga0208696_115996313300027696Peatlands SoilMRHGPPQHTIPAPYALPVGFAMFLAVGTVAAGLHGRLPATGVLIACAAIAGAMSFAAE
Ga0209446_116581213300027698Bog Forest SoilMRHGPAQRAIPAPYALPVGFAMFLAVGTVAAGLHGRLPATGVLIACAV
Ga0209655_1008930923300027767Bog Forest SoilMRLGHPASLAAAAGGGQRGIPAPYALPVGFAAFLAVGTVAAALHGRLDATGVLIACTV
Ga0209773_1017612723300027829Bog Forest SoilMRLGHPASLAAAAGGGQRGIPAPYALPVGFAAFLAVGTVAAALHGRLDATGV
Ga0209180_1004560213300027846Vadose Zone SoilMTHGSVQRAIPAPYALPVGFAMFLAVGTVAAALHGRLPATGVLIACAAV
Ga0209166_1019596113300027857Surface SoilMNLGYKQRGIPAPFALPVGFAAFLAVGTVAAGLGGRLSATGVLLACAAV
Ga0209167_1058499823300027867Surface SoilMNLGYKQRGIPAPFALPVGFAAFLATGTVAAALHGRLPATGVLIICAAV
Ga0209006_1012493023300027908Forest SoilMRLGQLHRGIPAPYALPVGFAALLAVGTVAAALHGRLDATGVLIACTVAAG
Ga0302220_1026286123300028742PalsaMSIGQGPRTIPAPYALPVSFAMFLAVGTVAAALHGHLPATGVLIACAAIAGVTSFA
Ga0302232_1021674513300028789PalsaMSIGQGPRTIPAPYALPVSFAMFLAVGTVAAALHGHLPATGVLIACA
Ga0302226_1003975823300028801PalsaMSIGQGPRTIPAPYALPVSFAMFLAVGTVAAALHGHLPATGVLIACAAIAG
Ga0302226_1044172013300028801PalsaMSVGQGPRTIPAPYALPVSFAMYLAVGTVAAALHGHLGATGVLIA
Ga0302228_1010286123300028808PalsaMTLGQGPRTIPAPYALPVSFAMFLAVGTVAAALHGHLPATGVLIACAAIAGVTSFA
Ga0302228_1018118523300028808PalsaMTLGQGQQTIPAPYALPVSFAMFLAVGTVAAALHGRLPATGVLIACAAIACVISFAA
Ga0308309_1113965523300028906SoilMRHGLGQRAIPAPYALPVGFAMFLAVGTVAAALHGRLPATGVLIACAAVAGAMS
Ga0222749_1022159923300029636SoilMNHGLGQRAIPAPYALPVGFAMFLVVGAVAAGLHGRLSATGVLIACAAIA
Ga0311369_1041613913300029910PalsaMRLGHPQRGIPAPYALPVGFAAFLAVGTVAAALHGRLDATGVLIACAV
Ga0311340_1008182533300029943PalsaMTLGQGPRTIPAPYALPVSFAMFLAVGTVAAALHGHLPATGVLIACA
Ga0311340_1132181323300029943PalsaMTLRQGLPTIPAPYALPVSFAMFLAVGTVAAALHGHLPATGVLIACAAIACVTSFAADP
Ga0311371_1185421113300029951PalsaMNPGFGYRAIRAPFALPVSFAMFLAVGTVAAALHGRFPADGVLSACAAVT
Ga0311371_1185817923300029951PalsaMTLGQGPRTIPAPYALPVSFAMFLAVGTVAAALHGHLPATGVLIACAAIA
Ga0311338_1184676423300030007PalsaMTLGQGPRTIPAPYALPVSFAMFLAVGTVAAALHGHLPATGVL
Ga0302178_1027330023300030013PalsaMTLSYGPRTIPAPYALPVSFAMFLAVGTVAAALHGHLPATGVLIACAAIACVTSFAAD
Ga0302177_1065310623300030053PalsaMSVGQGPRTIPAPYALPVSFAMFLAVGTVAAALHGRLPATGVLIACAA
Ga0311353_1055935713300030399PalsaVRSPWRRGLPAPYVLPAGFAALLAVGTVAAGLHGRLDATGVLICCAIVVGALAPVSEPTA
Ga0311357_1124142923300030524PalsaMPAPYALPVGFAMFLAVGTVAAGLHGRLPAAGVLIACAAVAAVMSFAAE
Ga0302180_1005367523300031028PalsaMSIGQGPRTIPAPYALPVSFAMFLAVGTVAAALHGHLPATGVL
Ga0302325_1149481613300031234PalsaMTLRQGLPTIPAPYALPVSFAMFLAVGTVAAALHGHLPATGVLIACAAIACVTSFAADPI
Ga0302326_1022467633300031525PalsaMSIGQGPRTIPAPYALPVSFAMFLAVGTVAAALHGHLPATGVLIA
Ga0318516_1035308513300031543SoilMPAPYVLPAGFAMFLAVGTVAAALHGRLTATGVLIACALVTFAVSFAAEPVASVL
Ga0318571_1013882313300031549SoilMRILGPRQRGIPAPYALPAGFAAFLAVGTVAAVLHGRLDAAGVLIACAVVAGAM
Ga0318528_1036670013300031561SoilMTHDLGQRAIPAPYALPVGFAMFLALGTVAAALHGRLPATGVLIACAAIAGVMS
Ga0318528_1056555523300031561SoilMTHHLRQRPVPAPYVLPAGFAAFLAVGTVAAALHGRLDAAGMLVACAAVA
Ga0318573_1027534823300031564SoilMTHHLGQRPVPAPYVLPAGFAVFLAVGTVAAVLHGRLDAAGVLLACAAVAG
Ga0318515_1028261313300031572SoilMTHDLGQRAIPAPYALPVGFAMFLAVGTVAAALHGRLPAAGRTR
Ga0318574_1052919023300031680SoilMRILGYRQHGIPAPYALPVGFAAFLAVGTVATALHGRLDATGVLIACAAVAGATSF
Ga0306917_1074580413300031719SoilMTHDLGQRAIPAPYALPVGFAMFLAVGTVAAALHGRLPAAGVLI
Ga0318493_1065258713300031723SoilMTHHLGQRPVPAPYVLPASFAVFLAVGTVAAVLHGRLDAAGVLLACAAVAGITSFVAEPA
Ga0318500_1045989113300031724SoilMRILGPRQRGIPAPYALPVGFAAFLAVGTVAAVLHGRLDATGVLIA
Ga0307477_1054268023300031753Hardwood Forest SoilMRLGHPASLAVYGGQRGIPAPYALPVGFAAFLAVGTVAAALHGHLDGTGVLIACTVVAGAVS
Ga0318521_1007986623300031770SoilMTHDLGQRAIPAPYALPVGFAMFLALGTVAAALHGRLPATGVLIACAAI
Ga0318546_1066326323300031771SoilMRILGPRQRGIPAPFALPVGFAAFLAVGTVAAALHGRLDAAGVLIACAA
Ga0318546_1127363123300031771SoilMTHDLGQRAIPAPYALPVGFAMFLALGTVAAALHGRLPATGVLIACAAIAGVMSFAVEPV
Ga0318498_1000676923300031778SoilMRILGPRQRGIPAPYALPAGFAAFLAVGTVAAVLHGRLDAAGVLIACAVLAGAMSP
Ga0318552_1040202623300031782SoilMTHHLGQRPVPAPYVLPAGFAVFLAVGTVAAVLHGRLDAAGVLLACAAVAGITSFVAEPA
Ga0318576_1031847213300031796SoilMRILGYRQHGIPAPYALPVGFAAFLAVGTVATALHGRLDAAGVLIACAAV
Ga0318497_1033502723300031805SoilMTHDLGQRAIPAPYALPVGFAMFLALGTVAAALHGRLPATGVL
Ga0318497_1079869513300031805SoilMTHHLGRRPVPAPYALPAGLAVFLAVGTVAAVLHGRLDAAGVLVACAVVAG
Ga0318568_1041982713300031819SoilMRILGPRQRGMPAPYALPTGFAAFLVVGTVAAALHGRLDATGVLIACAAVAGAMSFV
Ga0306923_1125471813300031910SoilMTHHLGQRPVPAPYVLPAGFAVFLAVGTVAAALHGRLDATGVLLACAAVAGITSFVA
Ga0318507_1049365013300032025SoilMTHHLRQRPVPAPYVLPTGFAAFLAVGTVAAALHGRLDAAGMLVACA
Ga0318506_1002253513300032052SoilMRILGPRQRGIPAPYALPAGFAAFLAVGTVAAVLHGRLDAAGVLIACAAV
Ga0318506_1031569913300032052SoilMPAPYVLPAGFAMFLAVGTVAAALHGRLTATGVLIACALVTFAVSFAAEPVASVLL
Ga0318506_1046494523300032052SoilMTHYLGRRPVPAPYALPAGLAVFLAVGTVAAVLHGRLDAAGVLIACAAVAGITSFVAEPVASVFLV
Ga0318570_1025284913300032054SoilMTHHLGQRPVPAPYVLPAGFAVFLAVGTVAAALHGRLNAAGVLVACAAVAGI
Ga0318533_1138111323300032059SoilMRILGYRQRGIPAPYALPVGFAAFLVVGTVAAALHGRLDATGVLIACAAVAGAMS
Ga0318514_1055635623300032066SoilMRILGPRQRGIPAPYALPVGFAAFLAVGTVAAVLHGRLDATGVL
Ga0335085_1115849113300032770SoilMTHDLGQRAIPAPYALPVGFGMFLAVGTVAAALHGRLPATGVLIACAAVAGVMSFAA
Ga0335075_1062921923300032896SoilMTLGYRQRGIPAPYALPVGFAAFLAVGTVAAALHGRLTGAGVLIACAAVA
Ga0335083_1143992223300032954SoilMTHHLGQRAVPAPYALPAGFAMFLAVGTAAAALHGRLTATGVLIACA
Ga0335076_1128010713300032955SoilMTHDLGRRAIPAPYALPVGFAMFLAVGTVAAALGGRLTATGVLL
Ga0335077_1123303523300033158SoilMRILGPRQRGIPAPFALPAGFAAFLAVGTVAAALHGRLDATGVLIACAA
Ga0310914_1112961023300033289SoilMTHHLGRRPVPAPYALPVGLAVFLAVGTVAAVLHGRLDAAGVLIACAAVAGITSFVAEPV
Ga0373948_0076549_600_7553300034817Rhizosphere SoilMSYRLGSRAAPAPYALPAGFAMFLAVGTVAAALHGRLPAGGVLIACASVAFA


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