Metagenome / Metatranscriptome Family F086251

Overview

Basic Information

• Family ID: F086251
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 111
• Average Sequence Length: 52 residues
• Representative Sequence: MNYFPYVIDMNIKRFQNLLETSVDETERRTIQRLLTEEKAKAALQASEPKKE
• Number of Associated Samples: 103
• Number of Associated Scaffolds: 111

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 74.77 %
• % of genes near scaffold ends (potentially truncated): 18.92 %
• % of genes from short scaffolds (< 2000 bps): 89.19 %
• Associated GOLD sequencing projects: 93
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (64.865 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (8.108 % of family members)
• Environment Ontology (ENVO): Unclassified (20.721 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (32.432 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 52.50%
  β-sheet: 0.00%
  Coil/Unstructured: 47.50%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF11752	DUF3309	8.11
PF13545	HTH_Crp_2	4.50
PF04392	ABC_sub_bind	3.60
PF00027	cNMP_binding	3.60
PF01925	TauE	2.70
PF04041	Glyco_hydro_130	2.70
PF03091	CutA1	1.80
PF00982	Glyco_transf_20	1.80
PF04325	DUF465	1.80
PF13185	GAF_2	1.80
PF01208	URO-D	0.90
PF03061	4HBT	0.90
PF13763	DUF4167	0.90
PF00166	Cpn10	0.90
PF16188	Peptidase_M24_C	0.90
PF02518	HATPase_c	0.90
PF08240	ADH_N	0.90
PF03699	UPF0182	0.90
PF00884	Sulfatase	0.90
PF00709	Adenylsucc_synt	0.90
PF00216	Bac_DNA_binding	0.90
PF09955	DUF2189	0.90
PF13779	DUF4175	0.90
PF11195	DUF2829	0.90
PF13467	RHH_4	0.90
PF09361	Phasin_2	0.90
PF13581	HATPase_c_2	0.90
PF04226	Transgly_assoc	0.90
PF00118	Cpn60_TCP1	0.90
PF12787	EcsC	0.90
PF07369	DUF1488	0.90
PF01145	Band_7	0.90
PF12071	DUF3551	0.90
PF06055	ExoD	0.90

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	3.60
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	2.70
COG2152	Predicted glycosyl hydrolase, GH43/DUF377 family	Carbohydrate transport and metabolism [G]	2.70
COG0380	Trehalose-6-phosphate synthase, GT20 family	Carbohydrate transport and metabolism [G]	1.80
COG1324	Divalent cation tolerance protein CutA	Inorganic ion transport and metabolism [P]	1.80
COG0104	Adenylosuccinate synthase	Nucleotide transport and metabolism [F]	0.90
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	0.90
COG0407	Uroporphyrinogen-III decarboxylase HemE	Coenzyme transport and metabolism [H]	0.90
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.90
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.90
COG1615	Uncharacterized membrane protein, UPF0182 family	Function unknown [S]	0.90
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.90
COG3932	Exopolysaccharide synthesis protein ExoD	Cell wall/membrane/envelope biogenesis [M]	0.90

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.86 %
Unclassified	root	N/A	35.14 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.86 %
Unclassified	root	N/A	35.14 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.86 %
Unclassified	root	N/A	35.14 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	56.76 %
Unclassified	root	N/A	35.14 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	49.55 %
Unclassified	root	N/A	35.14 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Level 6

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	37.84 %
Unclassified	root	N/A	35.14 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	18.02 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	3.60 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.80 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8.11 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	3.60 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.80 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	3.60 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	1.80 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.90 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.90 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	3.60 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1.80 %
Bradyrhizobium sp. Ec3.3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	0.90 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.90 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000364|INPhiseqgaiiFebDRAFT_100378891	Not Available	606
3300000956|JGI10216J12902_110577142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	877
3300000956|JGI10216J12902_117564584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1652
3300001471|JGI12712J15308_10036797	All Organisms → cellular organisms → Bacteria → Proteobacteria	1257
3300002461|AADWTP_10004240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	23818
3300003987|Ga0055471_10118664	Not Available	788
3300003998|Ga0055472_10100729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	809
3300004114|Ga0062593_101637014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	700
3300004157|Ga0062590_101416565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	692
3300004801|Ga0058860_11664800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	538
3300005329|Ga0070683_101339467	All Organisms → cellular organisms → Bacteria → Proteobacteria	688
3300005337|Ga0070682_100301608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1176
3300005338|Ga0068868_100274051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1426
3300005436|Ga0070713_102149661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	541
3300005440|Ga0070705_100921342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	704
3300005533|Ga0070734_10134608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1439
3300005541|Ga0070733_10979313	Not Available	568
3300005544|Ga0070686_100345230	All Organisms → cellular organisms → Bacteria → Proteobacteria	1117
3300005544|Ga0070686_100647267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	838
3300005591|Ga0070761_10180844	All Organisms → cellular organisms → Bacteria → Proteobacteria	1244
3300005842|Ga0068858_102119189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	556
3300006028|Ga0070717_11130332	All Organisms → cellular organisms → Bacteria	713
3300006028|Ga0070717_11564070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	598
3300006038|Ga0075365_10388130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	985
3300006047|Ga0075024_100353463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	735
3300006059|Ga0075017_100260351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1271
3300006086|Ga0075019_10372556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	870
3300006163|Ga0070715_10081562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1469
3300006237|Ga0097621_101975270	Not Available	557
3300006638|Ga0075522_10090920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1670
3300006804|Ga0079221_10057546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1768
3300006846|Ga0075430_101119686	Not Available	648
3300006950|Ga0075524_10445082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	574
3300007516|Ga0105050_10282155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1017
3300009088|Ga0099830_10285917	Not Available	1313
3300009089|Ga0099828_11295371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	645
3300009100|Ga0075418_12255182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	594
3300009147|Ga0114129_10048769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5952
3300009157|Ga0105092_10382211	Not Available	800
3300009167|Ga0113563_13719678	Not Available	516
3300009523|Ga0116221_1148849	Not Available	1020
3300009551|Ga0105238_10388431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1388
3300010341|Ga0074045_10792315	Not Available	599
3300010403|Ga0134123_12802716	Not Available	556
3300010403|Ga0134123_12855004	All Organisms → cellular organisms → Bacteria	552
3300010885|Ga0133913_13130135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1097
3300011003|Ga0138514_100105909	Not Available	612
3300011119|Ga0105246_11381299	Not Available	656
3300011120|Ga0150983_12086397	Not Available	909
3300011423|Ga0137436_1040956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1173
3300011445|Ga0137427_10457543	Not Available	526
3300012210|Ga0137378_11618547	Not Available	556
3300012355|Ga0137369_10356408	Not Available	1067
3300012361|Ga0137360_11193895	All Organisms → cellular organisms → Bacteria	658
3300012363|Ga0137390_11704732	Not Available	564
3300012931|Ga0153915_10841856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1065
3300012960|Ga0164301_10308691	Not Available	1069
3300012961|Ga0164302_11184695	Not Available	609
3300012984|Ga0164309_10953808	Not Available	703
3300013503|Ga0120127_10039150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	915
3300013503|Ga0120127_10072567	Not Available	729
3300014164|Ga0181532_10476445	Not Available	686
3300014311|Ga0075322_1050898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	906
3300014489|Ga0182018_10391259	Not Available	744
3300014501|Ga0182024_10530821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1489
3300014969|Ga0157376_10261298	Not Available	1622
3300015371|Ga0132258_13665603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1049
3300015374|Ga0132255_103613702	Not Available	658
3300017822|Ga0187802_10001027	All Organisms → cellular organisms → Bacteria → Proteobacteria	7307
3300017933|Ga0187801_10119017	All Organisms → cellular organisms → Bacteria	1013
3300017934|Ga0187803_10328020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	613
3300017937|Ga0187809_10060154	All Organisms → cellular organisms → Bacteria	1234
3300017940|Ga0187853_10148579	Not Available	1123
3300017943|Ga0187819_10556694	Not Available	652
3300017946|Ga0187879_10030072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3292
3300017974|Ga0187777_11339380	Not Available	527
3300017993|Ga0187823_10169252	All Organisms → cellular organisms → Bacteria	700
3300017995|Ga0187816_10003361	All Organisms → cellular organisms → Bacteria	5371
3300017995|Ga0187816_10540311	Not Available	525
3300018047|Ga0187859_10101373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1515
3300018061|Ga0184619_10202481	Not Available	912
3300020034|Ga0193753_10106112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1393
3300021074|Ga0194044_10030606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2281
3300021363|Ga0193699_10000060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	52149
3300021411|Ga0193709_1048399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	993
3300021475|Ga0210392_11149630	Not Available	582
3300021976|Ga0193742_1072849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1330
3300022553|Ga0212124_10626407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	557
3300025891|Ga0209585_10015413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2760
3300025891|Ga0209585_10451515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	530
3300025906|Ga0207699_10910195	Not Available	649
3300025912|Ga0207707_10462726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1084
3300025928|Ga0207700_10617384	Not Available	965
3300025928|Ga0207700_11720486	Not Available	553
3300025936|Ga0207670_10481781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1005
3300025944|Ga0207661_11602027	Not Available	596
3300027826|Ga0209060_10023784	All Organisms → cellular organisms → Bacteria → Proteobacteria	3162
3300027853|Ga0209274_10056522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1872
3300027862|Ga0209701_10194406	Not Available	1213
3300027898|Ga0209067_10497617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	692
3300027908|Ga0209006_10004743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12322
3300027915|Ga0209069_10291279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	863
3300028812|Ga0247825_10567975	All Organisms → cellular organisms → Bacteria → Proteobacteria	811
3300031241|Ga0265325_10020798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3613
3300031247|Ga0265340_10259573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	774
3300031708|Ga0310686_102636091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	883
3300031823|Ga0307478_10211241	Not Available	1565
3300032121|Ga0316040_114383	All Organisms → cellular organisms → Bacteria	578
3300032160|Ga0311301_10411833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2062
3300032205|Ga0307472_102663923	Not Available	510
3300032515|Ga0348332_14016203	All Organisms → cellular organisms → Bacteria	847

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.49%
Host-Associated	Host-Associated	13.51%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.46%
Aquatic	Environmental → Aquatic	27.03%
Plants	Host-Associated → Plants	12.61%
Human	Host-Associated → Human	0.90%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.66%
Freshwater	Environmental → Aquatic → Freshwater	18.02%
Sediment	Environmental → Aquatic → Sediment	7.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.21%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.60%
Marine	Environmental → Aquatic → Marine	1.80%
Roots	Host-Associated → Plants → Roots	1.80%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.90%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.90%
Digestive System	Host-Associated → Human → Digestive System	0.90%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.14%
Loam	Environmental → Terrestrial → Soil → Loam	18.02%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	12.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.41%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.50%
Lake	Environmental → Aquatic → Freshwater → Lake	2.70%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.80%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.80%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.90%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	0.90%
Ice	Environmental → Aquatic → Freshwater → Ice	0.90%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.90%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.90%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.90%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.90%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.90%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.51%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	7.21%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.21%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	5.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.41%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.60%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	2.70%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.70%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.70%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.70%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.80%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.90%
Unclassified	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified	0.90%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	0.90%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.90%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.90%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.90%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.90%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.90%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.90%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.11%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	7.21%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.21%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.31%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.50%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	3.60%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.60%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.70%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.70%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.70%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.70%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.80%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.80%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.80%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.80%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.80%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.90%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.90%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.90%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.90%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.90%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.90%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.90%
Freshwater	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Freshwater	0.90%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	0.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.90%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.90%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.90%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.90%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.90%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.90%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.90%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.90%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.90%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental
3300002461	Freshwater microbial communities from a drinking water treatment plant in Ann Arbor, Michigan, USA	Environmental
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental
3300003998	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2	Environmental
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated
3300006950	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one	Environmental
3300007516	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01	Environmental
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental
3300010885	northern Canada Lakes Co-assembly	Environmental
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental
3300011423	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2	Environmental
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental
3300013503	Permafrost microbial communities from Nunavut, Canada - A23_5cm_12M	Environmental
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental
3300014311	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D1	Environmental
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated
3300015374	Col-0 rhizosphere combined assembly	Host-Associated
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental
3300021074	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L442-17m	Environmental
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental
3300021976	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c1	Environmental
3300022553	Powell_combined assembly	Environmental
3300025891	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one (SPAdes)	Environmental
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental
3300031241	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG	Host-Associated
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental
3300032121	Soil microbial communities from Bohemian Forest, Czech Republic ? CSA3 metaT (Metagenome Metatranscriptome) (v2)	Environmental
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1003788912	3300000364	Soil	MNYFSXATDMNIKRFQNLLETSADETKRQTIQRLLTEEKAKAVLQASEPKKE*
JGI10216J12902_1105771423	3300000956	Soil	MFSHDIDIKRFQNLLETSVDKTERRTIQRLLSEEEEKARAAAQPSEPDKD*
JGI10216J12902_1175645843	3300000956	Soil	MFSHAVDIKRFQNLLETSVDQAERRTIQKLLAEEKARAAAQPSEPDKD*
JGI12712J15308_100367973	3300001471	Forest Soil	MNNFSYATDCNIKRFQDLLDTSVDATERETLQRLIAEEKAKAELQASKPK*
AADWTP_1000424021	3300002461	Freshwater	MSTQSFAMEANIKRFQNLLETSVDETERRTLQRLLLEEKAKEEPASEPDRQ*
Ga0055471_101186642	3300003987	Natural And Restored Wetlands	MSSFSYSIDIKRFQNLLETSVDEAERRMIEKFLAEQKAKAELRASEAKKE*
Ga0055472_101007292	3300003998	Natural And Restored Wetlands	LVEAVMSNFSYSIDIKRFQNLLETSVDETERRMIEKLLAEQKARADLRASEPKKE*
Ga0062593_1016370142	3300004114	Soil	MNCFSYATDMNIKRFQNLLETSVDESERRMIERLLTEEKAKEASQASEPKK
Ga0062590_1014165651	3300004157	Soil	MFSYDIDIKRFQNLLETSVDETERRTIQKLLTEAKTKAAVQVAEPKKD*
Ga0058860_116648001	3300004801	Host-Associated	MNYFSYATEMNIKRFQNLLETSVDETERRRIERLLTEEKAKEALQASEPKKE*
Ga0070683_1013394671	3300005329	Corn Rhizosphere	MNDFSYTIDLNIRRFQNLLRTSVDETERQTIQRLLSEEEAKAASQAAERKKD*
Ga0070682_1003016082	3300005337	Corn Rhizosphere	MNDFSYTIDLNIRRFQNLLRTSVDETERQTIQRLLSEEEAKAASQASERKKD*
Ga0068868_1002740511	3300005338	Miscanthus Rhizosphere	MNDFSYAIDINIKRFQNLLRTSVDETERQTIQRLLSEEEAKATLQASERKKD*
Ga0070713_1021496612	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTDLSYVTDANIKRFQNLLDTSVDPTERQMLQRLLAEERAKTALQASGREKK*
Ga0070705_1009213422	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MNDFSYTIDLNIRRFRNLLRTSVDETERQTIQRLLSEEEAKAASQASERKKD*
Ga0070734_101346082	3300005533	Surface Soil	MTDFSYATNLNIKRFQNLLDTSIDATERQVLQRLLAEETAKAALHASERDKK*
Ga0070733_109793132	3300005541	Surface Soil	MNGSNYVVNSNIRRFQNLLETSVDDTERQTIEKLLTEEKARAALQASEPPKA*
Ga0070686_1003452301	3300005544	Switchgrass Rhizosphere	MNDFSYTIDLNIRRFQNLLRTSVDETERQTIQRLLSEEQAKAASQASERKKD*
Ga0070686_1006472671	3300005544	Switchgrass Rhizosphere	PMNYFSYARDMNIKRFQNLLETSVDETERQMIERLLTEEKAKDASQASEPKK*
Ga0070761_101808442	3300005591	Soil	MSDFSYATDCNIKRFQNLLDTSVDATERAMLQRLIVEEKAKADLQASKPK*
Ga0068858_1021191892	3300005842	Switchgrass Rhizosphere	PMNDFSYTIDLNIRRFQNLLRTSVDETERQTIQRLLSEEEAKAASQASERKKD*
Ga0070717_111303321	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MDDFAYATYCNIKRLQNLLDTSVDETERRTLERLLIEEKSKDSLHAS
Ga0070717_115640701	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	NCNIKRFQNLLDTSVDASERRVLQRLLAEEKAKANLPESEPKARPTSL*
Ga0075365_103881302	3300006038	Populus Endosphere	MNVFSQSIDIKRFQNLLETSNDERERRILRRLLAEEKERASLAASSPKKD*
Ga0075024_1003534632	3300006047	Watersheds	MNSFVYATDLNIKLFQNMLDTSVDETERRTIQHLLSEEKAKAGQQASKPKTE*
Ga0075017_1002603512	3300006059	Watersheds	MNSFVYATDLNIKRFQNMLDTSVDETERRTIQHLLSEEKAKAGQQASKPKTE*
Ga0075019_103725562	3300006086	Watersheds	MNSFVYATDLNIKRFQNMLDTSVDETARRTIQHLLSEEKAKAGQQASKPKTE*
Ga0070715_100815621	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MSDLSLATASNIKRFKNLLDTSVDATEQQLLQRLLAEEEAKAVLQASGQKK*
Ga0097621_1019752702	3300006237	Miscanthus Rhizosphere	MNNFSYSIDIKRFQNLLETSVDDTERRTIQHLLTNEKAKAALQASEPKKK*
Ga0075522_100909201	3300006638	Arctic Peat Soil	MNSFSYAAEMNIRRFQTLLETSVDEAERKKIQCLLAEEKAKAGLLTLDTRKL*
Ga0079221_100575461	3300006804	Agricultural Soil	MSDLSLATASNIKRFKNLLDTSVDATERKLLQRLLAEEEAKAIRQASRQDQK*
Ga0075430_1011196862	3300006846	Populus Rhizosphere	MNYFSHSIDIKRFQNLLETSVDETERRTIQRLLTEEKAKAPLPAVAPKTE*
Ga0075524_104450822	3300006950	Arctic Peat Soil	MNSFSYAAEMNIRRFQTLLETSVDEAERKKIQCLLAEEKSKAGLLTLDTKKQ*
Ga0105050_102821551	3300007516	Freshwater	MNAFTYANDTNIRRFENLLETSVDEAERRIIESLLAEEKAKAELLASEPAEK*
Ga0099830_102859173	3300009088	Vadose Zone Soil	MNDFSHAINTNIKRFRNLLETSVDETERQTIRRLLTEENAKAALQGSEAKKIQR*
Ga0099828_112953711	3300009089	Vadose Zone Soil	MNYFPYVIDMNIKRFQNLLETSVDETERRTIQRLLTEEKAKAALQASEPKKE*
Ga0075418_122551821	3300009100	Populus Rhizosphere	MFSHDIDIKRFQNLLETSVDQAERRTIQKLLAEEKARAAAQPPEADED*
Ga0114129_100487699	3300009147	Populus Rhizosphere	MNFFSCAIDIKRFQNLLETSVDETERRTIQRLLIEERAKPALPAAEPKNE*
Ga0105092_103822112	3300009157	Freshwater Sediment	MNYFSCSIDIKLFQNLLKTSVDDAERRTIQKLLTEEKPKAVLPTPAPKKEQASTP*
Ga0113563_137196781	3300009167	Freshwater Wetlands	SYSIDIKRFQNLLDTSVDGTERQNIQSLLAKEKTKAEFPEPAPKKE*
Ga0116221_11488491	3300009523	Peatlands Soil	MNNFSYGTDIKRLQNLLETSVDDTERQRIQILLSKEKTKAALQTSEPKRE*
Ga0105238_103884312	3300009551	Corn Rhizosphere	MNDFSYTTYLNIRRFQNLLRTSVDETERQTIQRLLSEEEAKAASQASERKKD*
Ga0074045_107923151	3300010341	Bog Forest Soil	MNNFSYTVDIKQFQNLLETSVDDTERQKIQILLGKEKAKVALQASEPKKE*
Ga0134123_128027161	3300010403	Terrestrial Soil	MNHSSYATEMNIKRFQNLLETSVDETERRRIERLLTEEKAKEALQASEPKKE*
Ga0134123_128550041	3300010403	Terrestrial Soil	MNDFSYSVDVNIRQFQNLLRTSVDETERQTIQRLLSQEEARATLQAAERKKD*
Ga0133913_131301352	3300010885	Freshwater Lake	MSSQSYATEANIKRFQNLLDTSVDQAERQILQTLLAEEKAKPEMQASEPGPG*
Ga0138514_1001059091	3300011003	Soil	MSSSPYAIEINIKRFQNLLETSFNEGERKKINTLLSEEKAKAELQALEAKKE*
Ga0105246_113812991	3300011119	Miscanthus Rhizosphere	MNYFSYATEMNIKRFQNLLETSVDETERRRIERLLLTEEKAREALQASEPKKE*
Ga0150983_120863971	3300011120	Forest Soil	MTNFSYATDCNIKRFQNLLDTSVDATEREMLQRLIAEEKAKAELQASKPK*
Ga0137436_10409561	3300011423	Soil	SPFSYSIDIKRFQNLLDTSVDKTERQRIQKLLSDEKTKAELQTLNSKKD*
Ga0137427_104575432	3300011445	Soil	MHPFSCAIDIKRFQNLLETSVDDTERRTIQKLLAEEKAKVALQASDSTKE*
Ga0137378_116185471	3300012210	Vadose Zone Soil	MNYFPYVIDMNIKRFQNLLETSVDETERRTIQGLLTEEKAKAALQASEPKKE*
Ga0137369_103564081	3300012355	Vadose Zone Soil	MNYFPYVIDMNIKRFQNLLEASVDETERRTIQKLLTEEKAKAPLQASEPKKE*
Ga0137360_111938952	3300012361	Vadose Zone Soil	MNDFSYVRDMNIKRFRNLLETSVDETERRTIQGLLTEEKAKAALQASEPKKE*
Ga0137390_117047322	3300012363	Vadose Zone Soil	MNDFSHAINTNIKRFRNLLETSVDETERQTIRSLLTEENAKAALQGSEAKKIQR*
Ga0153915_108418563	3300012931	Freshwater Wetlands	MNSFVYATDMNIKRFQNMLDTSVDETERQTIQCLLSEEKAKAGQQASKPMTE*
Ga0164301_103086913	3300012960	Soil	PMNNFSYSIDIRRFQNLQETSVDDTERRTIQHLLTNEKAKAALQASEPEKK*
Ga0164302_111846951	3300012961	Soil	MEAIMNDFSYVTDANVKRFRNLMETSLNDIERQAIQRMLTEELAKAALPKK*
Ga0164309_109538082	3300012984	Soil	MEAIMNDFSYVTDANVKRFRNLLETSLNDIERQAIQRMLTEELAKAALPKK*
Ga0120127_100391502	3300013503	Permafrost	MNSFVYATDMNIKRFQNMLDTSVDETERRTIQRLLTEEKAKAGQQASKPMTE*
Ga0120127_100725673	3300013503	Permafrost	MNSFSYSIDIKRFQNLLDTSVDETERQKLQSLLDEEKAKAEPQASELKNE*
Ga0181532_104764451	3300014164	Bog	MNNFSYTVDIKRFQNLLETSVDDTERQKIQILLSKEKAKVALQASEPKKE*
Ga0075322_10508983	3300014311	Natural And Restored Wetlands	MSSFSYSIDIKRFQNLLETSVDEAERRMIEKFLAEQKAKAELRASEAKK
Ga0182018_103912592	3300014489	Palsa	MSDFFYATDSNIKRFRNLLETSVDETERRTIQRLLTEEVAKAGLATKEIGGGRP*
Ga0182024_105308214	3300014501	Permafrost	MNTFSHAIDIKRIQNLLETSVDDAERQRIKNLLSKEKANAPLQALGPKRE*
Ga0157376_102612981	3300014969	Miscanthus Rhizosphere	SCGGDPMNNFSYSIDIKRFQNLLETSVDDTERRTIQHLLTNEKAKAALQASEPKKK*
Ga0132258_136656032	3300015371	Arabidopsis Rhizosphere	MDHASYATDLNIKRFQNLLDTSLNETERRTIQSLLTEEKARAALQASGPKSSAP*
Ga0132255_1036137021	3300015374	Arabidopsis Rhizosphere	LIPHDGGGYPMNYFSYATEMNIKRFQNLLETSVDETERRRIVKLLTEEKAKEALQASEPNK*
Ga0187802_100010273	3300017822	Freshwater Sediment	MDVFSYTTNTNIKRFQNLLETSLDKSERQTIQKLLTEEKAKAALQALEPKKESKNLRENI
Ga0187801_101190172	3300017933	Freshwater Sediment	MIDFCYTTNINIKRFQNLLETSLDKSERQTIQKLLTEEKAKAALQALEPKKESKNLRENI
Ga0187803_103280201	3300017934	Freshwater Sediment	MNSFVYATDMNIKRFQNLLDTSVDKIERETLQRLLNEEKAAAGRHAAKPTTD
Ga0187809_100601541	3300017937	Freshwater Sediment	MDVFSYTTNTNIKRFQNLLETSLDKSERQTIQKLLTEEKAKAALQALELKKESKDLRENT
Ga0187853_101485791	3300017940	Peatland	MNNFSYTVDIKRFQNLLETSVDDTERQKIQILLSKEKAKVALQASEPKKE
Ga0187819_105566941	3300017943	Freshwater Sediment	MDVFSYTTNTNIKRFQNLLETSLDKSERQTIQKLLTEEKAKAVLQALEPKKESKDLRENT
Ga0187879_100300724	3300017946	Peatland	MNDFSYAMNVNIKRFQNLLETSVDEAERRTIQTLLTQEKAKAALAVSDPKMK
Ga0187777_113393801	3300017974	Tropical Peatland	MNLKSYAIDLNIRRFQNLLETSVDEAERRTLQRLLAEEKAKAASQAS
Ga0187823_101692522	3300017993	Freshwater Sediment	MDVFFYTTNTNIKRFQNLLETSLDKSERQTIQKLLTEEKAKAALQALEPKKESKNLRENI
Ga0187816_100033612	3300017995	Freshwater Sediment	MDVFSYTTNTNIKRFQNLLETSLDESERQTVKKLLAEEKFKAGLQALQPTKE
Ga0187816_105403111	3300017995	Freshwater Sediment	MNNFSYGIDIKRLQNLLETSVDDTEQQRIQILLSKEKTKAALQTSEPKRE
Ga0187859_101013731	3300018047	Peatland	RLAMNNFSYTVDIKRFQNLLETSVDDTERQKIQILLSKERAKVALQASEPKKE
Ga0184619_102024811	3300018061	Groundwater Sediment	MNYFSYSTDIKRFQNLLETSVNETERRAPQRLLTEEKAKAALPASKPQKE
Ga0193753_101061121	3300020034	Soil	MHSFSHSIDIKRFQNLLATSVDETERKTIQRLLTDEKDKAELQAKEAKKD
Ga0194044_100306062	3300021074	Anoxic Zone Freshwater	MSSQSYATEANIKRFQNLLDTSVDQAERQILQTLLAEEKAKPEMQASEPGPG
Ga0193699_1000006025	3300021363	Soil	MHSFSHSIDIKRFQNLLATSVDETEQQTIQRLLADEKNKAELQAKEAKKD
Ga0193709_10483992	3300021411	Soil	MRSFSHSIDIKRFQNLLATSVDESERQTIQRLLTDEKNKAELQAKEAKKD
Ga0210392_111496301	3300021475	Soil	MSDFFDATDSKIKRFRNLLETSVDETERRTIQRLLTEELAKAGLATKEIGGGRP
Ga0193742_10728491	3300021976	Soil	MHSFSHSIDIKRFQNLLNTSVDETERKTIQRLLTDEKDKAELQAKEAKKD
Ga0212124_106264071	3300022553	Freshwater	MNSFSYAIDMNIKRFQDLLHGSVDKTERQTIKNLLSEEQAKAAVQASAPKKD
Ga0209585_100154133	3300025891	Arctic Peat Soil	MNSFSYATEMNIRRFQTLLETSVDAAERKMIQCLLAEEKAKAGLLTLDTRKL
Ga0209585_104515151	3300025891	Arctic Peat Soil	MNSFSYAAEMNIRRFQTLLETSVDEAERKKIQCLLAEEKAKAGLLTLDTRKL
Ga0207699_109101952	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MHHFSYATDCNIKRFQNLLDTSDDEIERQTLRRLLAEEKAKAELQASEAKKP
Ga0207707_104627262	3300025912	Corn Rhizosphere	MNDFSYTIDLNIRRFQNLLRTSVDETERQTIQRLLSEEEEAKAASQASERKKD
Ga0207700_106173841	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MTDLSYVTDANIKRFQNLLDTSVDPTERQMLQRLLAEERAKTALQASGREKK
Ga0207700_117204861	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MNDSNYVVNSNIRRFQNLLDTSVDDTERQTLERLLTEEKARAALQASEPPKA
Ga0207670_104817812	3300025936	Switchgrass Rhizosphere	MNDFSYAIDINIKRFQNLLRTSVDETERQTIQRLLSEEEAKATLQASERKKD
Ga0207661_116020272	3300025944	Corn Rhizosphere	MNDFSYTIDLNIRRFQNLLRTSVDETERQTIQRLLSEEEAKAASQAAERKKD
Ga0209060_100237846	3300027826	Surface Soil	MTDFSYATNLNIKRFQNLLDTSIDATERQVLQRLLAEETAKAALHASERDKK
Ga0209274_100565223	3300027853	Soil	MSDFSYATDCNIKRFQNLLDTSVDATERAMLQRLIVEEKAKADLQASKPK
Ga0209701_101944063	3300027862	Vadose Zone Soil	MNDFSHAINTNIKRFRNLLETSVDETERQTIRRLLTEENAKAALQGSEAKKIQR
Ga0209067_104976172	3300027898	Watersheds	MNSFVYATDLNIKRFQNMLDTSVDETARRTIQHLLSEEKAKAGQQASKPKTE
Ga0209006_100047438	3300027908	Forest Soil	MNNFSYATDCNIKRFQDLLDTSVDATERETLQRLIAEEKAKAELQASKPK
Ga0209069_102912792	3300027915	Watersheds	MNSFVYATDLNIKLFQNMLDTSVDETERRTIQHLLSEEKAKAGQQASKPKTE
Ga0247825_105679752	3300028812	Soil	MNCFSYAIDIKRFENLLETSVDDTERRTIQKLLAEEKAKVALQASESTKE
Ga0265325_100207983	3300031241	Rhizosphere	MNSFVYATDMNIKRFQNLLDTSVDETERRTIRGLLGEEKAKAAQQASKPKTE
Ga0265340_102595733	3300031247	Rhizosphere	MNPFSYSINLNIKRFQDLLETSVDEAERRTIRQLLSEEKTKATLQAPEPPDKK
Ga0310686_1026360911	3300031708	Soil	VARNDFSYAINVNIKRFQNLLETSVDETERRTIETLLTQEKAKAAQVVSEPKMK
Ga0307478_102112413	3300031823	Hardwood Forest Soil	MNGSNHVVNSNIRRFQNLLETSVDDTERQTIEKLLTEEKAKAALQASEPPKA
Ga0316040_1143831	3300032121	Soil	MMVEVARNDFSYAINVNIKRFQNLLETSVDETERRTIETLLTQEKAKAA
Ga0311301_104118332	3300032160	Peatlands Soil	MNNFSYGTDIKRLQNLLETSVDDTERQRIQILLSKEKTKAALQTSEPKRE
Ga0307472_1026639231	3300032205	Hardwood Forest Soil	MIDFSYAPNINIKRFQNLLETSLDEPERQTIQKLLAEEKFKAALQALGP
Ga0348332_140162031	3300032515	Plant Litter	MMVEVARNDFSYAINVNIKRFQNLLETSVDETERRTIETLLTQEKAKAAQVVS