Metagenome / Metatranscriptome Family F086220

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086220
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	69 residues
Representative Sequence	MFDDLDTLFEFGAVIALTISGWIVTMRVRRRMKKSLGRKATDLELASLKTWMRVEEAEQREKESGPIHPR
Number of Associated Samples	79
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	93.69 %
% of genes near scaffold ends (potentially truncated)	15.32 %
% of genes from short scaffolds (< 2000 bps)	84.68 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (75.676 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (26.126 % of family members)
Environment Ontology (ENVO)	Unclassified (36.036 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (57.658 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.18% β-sheet: 0.00% Coil/Unstructured: 40.82%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF03571	Peptidase_M49	5.41
PF00478	IMPDH	2.70
PF04892	VanZ	2.70
PF02885	Glycos_trans_3N	1.80
PF13340	DUF4096	0.90
PF00741	Gas_vesicle	0.90
PF02773	S-AdoMet_synt_C	0.90
PF01569	PAP2	0.90
PF01694	Rhomboid	0.90
PF00578	AhpC-TSA	0.90
PF01713	Smr	0.90
PF13646	HEAT_2	0.90
PF01590	GAF	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0192	S-adenosylmethionine synthetase	Coenzyme transport and metabolism [H]	0.90
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.68 %
Unclassified	root	N/A	24.32 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	75.68 %
Unclassified	root	N/A	24.32 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.68 %
Unclassified	root	N/A	24.32 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	42.34 %
Unclassified	root	N/A	24.32 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	27.93 %
Unclassified	root	N/A	24.32 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	11.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.93 %
Unclassified	root	N/A	24.32 %
Candidatus Angelobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter	8.11 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.93 %
Unclassified	root	N/A	24.32 %
unclassified Candidatus Angelobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter	8.11 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.93 %
Unclassified	root	N/A	24.32 %
Candidatus Angelobacter sp. Gp1-AA117	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	8.11 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.93 %
Unclassified	root	N/A	24.32 %
Candidatus Angelobacter sp. Gp1-AA117	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	8.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352024\|deeps__Contig_155924	Not Available	550	Open in IMG/M
3300004479\|Ga0062595_100266140	All Organisms → cellular organisms → Bacteria	1126	Open in IMG/M
3300004803\|Ga0058862_12422212	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300005169\|Ga0066810_10009209	All Organisms → cellular organisms → Bacteria → Acidobacteria	1418	Open in IMG/M
3300005329\|Ga0070683_101024846	Not Available	792	Open in IMG/M
3300005336\|Ga0070680_100437258	Not Available	1117	Open in IMG/M
3300005336\|Ga0070680_100654345	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300005338\|Ga0068868_100843416	Not Available	830	Open in IMG/M
3300005434\|Ga0070709_10210865	All Organisms → cellular organisms → Bacteria	1381	Open in IMG/M
3300005434\|Ga0070709_10280035	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300005434\|Ga0070709_10544188	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	887	Open in IMG/M
3300005434\|Ga0070709_11212261	Not Available	607	Open in IMG/M
3300005436\|Ga0070713_100108063	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2421	Open in IMG/M
3300005436\|Ga0070713_100240834	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1647	Open in IMG/M
3300005436\|Ga0070713_102420600	Not Available	508	Open in IMG/M
3300005437\|Ga0070710_11229718	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300005439\|Ga0070711_100039157	All Organisms → cellular organisms → Bacteria	3191	Open in IMG/M
3300005439\|Ga0070711_100220706	All Organisms → cellular organisms → Bacteria	1473	Open in IMG/M
3300005526\|Ga0073909_10042805	All Organisms → cellular organisms → Bacteria	1611	Open in IMG/M
3300005532\|Ga0070739_10067875	All Organisms → cellular organisms → Bacteria	2175	Open in IMG/M
3300005533\|Ga0070734_10004894	All Organisms → cellular organisms → Bacteria	12265	Open in IMG/M
3300005535\|Ga0070684_101297075	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300005537\|Ga0070730_10143932	All Organisms → cellular organisms → Bacteria	1621	Open in IMG/M
3300005542\|Ga0070732_10023223	All Organisms → cellular organisms → Bacteria	3502	Open in IMG/M
3300005547\|Ga0070693_100117934	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1642	Open in IMG/M
3300005547\|Ga0070693_100408058	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300005554\|Ga0066661_10004571	All Organisms → cellular organisms → Bacteria	6344	Open in IMG/M
3300005563\|Ga0068855_101019301	All Organisms → cellular organisms → Bacteria → Proteobacteria	869	Open in IMG/M
3300005614\|Ga0068856_100965300	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	871	Open in IMG/M
3300006028\|Ga0070717_10081112	All Organisms → cellular organisms → Bacteria	2723	Open in IMG/M
3300006028\|Ga0070717_10580135	All Organisms → cellular organisms → Bacteria	1017	Open in IMG/M
3300006028\|Ga0070717_10869775	Not Available	820	Open in IMG/M
3300006041\|Ga0075023_100068418	All Organisms → cellular organisms → Bacteria	1158	Open in IMG/M
3300006163\|Ga0070715_10619790	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300006163\|Ga0070715_10756748	Not Available	586	Open in IMG/M
3300006173\|Ga0070716_100499519	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	897	Open in IMG/M
3300006175\|Ga0070712_100762068	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	829	Open in IMG/M
3300006755\|Ga0079222_10711705	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300009174\|Ga0105241_12142634	Not Available	553	Open in IMG/M
3300009551\|Ga0105238_10426921	All Organisms → cellular organisms → Bacteria	1321	Open in IMG/M
3300009551\|Ga0105238_11182776	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	789	Open in IMG/M
3300009551\|Ga0105238_11752192	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653	Open in IMG/M
3300010371\|Ga0134125_10398087	All Organisms → cellular organisms → Bacteria	1527	Open in IMG/M
3300010373\|Ga0134128_10603227	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1222	Open in IMG/M
3300010373\|Ga0134128_11391556	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	773	Open in IMG/M
3300010373\|Ga0134128_11535796	Not Available	733	Open in IMG/M
3300010375\|Ga0105239_11127054	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	903	Open in IMG/M
3300010376\|Ga0126381_100044433	All Organisms → cellular organisms → Bacteria	5402	Open in IMG/M
3300010396\|Ga0134126_10799491	Not Available	1066	Open in IMG/M
3300010397\|Ga0134124_10519645	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1154	Open in IMG/M
3300010397\|Ga0134124_12249094	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	585	Open in IMG/M
3300010398\|Ga0126383_10010278	All Organisms → cellular organisms → Bacteria → Acidobacteria	6760	Open in IMG/M
3300010398\|Ga0126383_10075126	All Organisms → cellular organisms → Bacteria	2925	Open in IMG/M
3300012206\|Ga0137380_10012419	All Organisms → cellular organisms → Bacteria	7763	Open in IMG/M
3300012212\|Ga0150985_115200596	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	605	Open in IMG/M
3300012683\|Ga0137398_10532651	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300012685\|Ga0137397_10990922	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	619	Open in IMG/M
3300012925\|Ga0137419_11600520	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300012930\|Ga0137407_10674158	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	973	Open in IMG/M
3300012951\|Ga0164300_10099819	Not Available	1272	Open in IMG/M
3300012955\|Ga0164298_11188435	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	577	Open in IMG/M
3300012957\|Ga0164303_10452218	Not Available	809	Open in IMG/M
3300012958\|Ga0164299_10055212	All Organisms → cellular organisms → Bacteria	1878	Open in IMG/M
3300012960\|Ga0164301_10625031	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	799	Open in IMG/M
3300012960\|Ga0164301_11284409	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	592	Open in IMG/M
3300012961\|Ga0164302_10362742	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300012985\|Ga0164308_10272453	All Organisms → cellular organisms → Bacteria	1330	Open in IMG/M
3300012985\|Ga0164308_10331871	All Organisms → cellular organisms → Bacteria	1220	Open in IMG/M
3300012986\|Ga0164304_10682151	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	778	Open in IMG/M
3300012989\|Ga0164305_10552094	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	917	Open in IMG/M
3300012989\|Ga0164305_10883460	Not Available	749	Open in IMG/M
3300013105\|Ga0157369_12281420	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300013296\|Ga0157374_11153014	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	796	Open in IMG/M
3300013306\|Ga0163162_11652580	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	731	Open in IMG/M
3300018468\|Ga0066662_10000367	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	19838	Open in IMG/M
3300018468\|Ga0066662_10942708	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	851	Open in IMG/M
3300018468\|Ga0066662_11147302	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	781	Open in IMG/M
3300021560\|Ga0126371_13759017	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	512	Open in IMG/M
3300025898\|Ga0207692_10763771	Not Available	630	Open in IMG/M
3300025898\|Ga0207692_10962509	Not Available	563	Open in IMG/M
3300025905\|Ga0207685_10543526	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300025905\|Ga0207685_10818326	Not Available	514	Open in IMG/M
3300025906\|Ga0207699_10200413	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1352	Open in IMG/M
3300025906\|Ga0207699_10774205	Not Available	705	Open in IMG/M
3300025916\|Ga0207663_10879158	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	716	Open in IMG/M
3300025917\|Ga0207660_10494668	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	992	Open in IMG/M
3300025917\|Ga0207660_11562579	Not Available	532	Open in IMG/M
3300025924\|Ga0207694_10710648	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	848	Open in IMG/M
3300025924\|Ga0207694_11267838	Not Available	623	Open in IMG/M
3300025924\|Ga0207694_11342801	Not Available	604	Open in IMG/M
3300025927\|Ga0207687_10298608	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1297	Open in IMG/M
3300025928\|Ga0207700_10195759	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1701	Open in IMG/M
3300025928\|Ga0207700_10790206	Not Available	849	Open in IMG/M
3300025928\|Ga0207700_11461421	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	607	Open in IMG/M
3300025929\|Ga0207664_11513551	Not Available	593	Open in IMG/M
3300025944\|Ga0207661_10074242	All Organisms → cellular organisms → Bacteria	2787	Open in IMG/M
3300025944\|Ga0207661_10123573	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2207	Open in IMG/M
3300025949\|Ga0207667_10834267	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300026041\|Ga0207639_11846634	Not Available	565	Open in IMG/M
3300026142\|Ga0207698_11001846	Not Available	846	Open in IMG/M
3300026555\|Ga0179593_1037335	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300027773\|Ga0209810_1127401	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1096	Open in IMG/M
3300027821\|Ga0209811_10195115	Not Available	764	Open in IMG/M
3300027826\|Ga0209060_10006075	All Organisms → cellular organisms → Bacteria → Acidobacteria	8413	Open in IMG/M
3300027842\|Ga0209580_10003054	All Organisms → cellular organisms → Bacteria	7184	Open in IMG/M
3300027842\|Ga0209580_10003879	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6384	Open in IMG/M
3300027857\|Ga0209166_10710572	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300031057\|Ga0170834_112723293	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1257	Open in IMG/M
3300031122\|Ga0170822_16162071	Not Available	893	Open in IMG/M
3300031128\|Ga0170823_14557452	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	699	Open in IMG/M
3300031231\|Ga0170824_124074968	All Organisms → cellular organisms → Bacteria → Proteobacteria	688	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.98%
Host-Associated	Host-Associated	18.02%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.08%
Plants	Host-Associated → Plants	17.12%
Aquatic	Environmental → Aquatic	0.90%
Human	Host-Associated → Human	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.08%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.21%
Sediment	Environmental → Aquatic → Sediment	0.90%
Digestive System	Host-Associated → Human → Digestive System	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.85%
Loam	Environmental → Terrestrial → Soil → Loam	34.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.91%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.90%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.84%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	34.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.60%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.60%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.90%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	26.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.81%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	9.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	7.21%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	7.21%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	6.31%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.41%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.60%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.60%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.80%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.90%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.90%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027773	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deeps_02866710	2199352024	Soil	HILGIVIGAAFSGWIVTMQVQRRMKKSLGRKATDLELASLKTWMRVEEAEQREEESRPIHPH
Ga0062595_1002661402	3300004479	Soil	MDEFLFDGFFEFFGAIGATVSDWTVTRQVRRRMGKSLGKAPSDLELASLKTWMKVEEREQQEKESASIHPR*
Ga0058862_124222122	3300004803	Host-Associated	MDLLDGLFGFGGALAATISEWIVTGRARRRMGKSLGKTPSDLELASLKTWMRVEETEQREDESRPIHPR*
Ga0066810_100092093	3300005169	Soil	MFSSISTLYILGSVIALTVSGWIVTIRVRRRMRKSLGRTPSDLELASLKTWMQVEQDEELREATKPLHPR*
Ga0070683_1010248461	3300005329	Corn Rhizosphere	MFDTFDTQIGIVGLIALTVSGWIVSLQVRRRMKKSLGRKATNLELASLNTWMRVAEAEQRDKESRPIHPR*
Ga0070680_1004372583	3300005336	Corn Rhizosphere	MFDTFDTQIGIVGLIALTVSGWIVSLRVRRRMKKSLGRKASDLELASLKTWMRVEETEQRDKESSPIHPC*
Ga0070680_1006543452	3300005336	Corn Rhizosphere	MDLIDGLFEFVAVIAVTVSAWIVTRQVRRRMRKSLGKTPTDLELASLKTWMRVEETERREEESRPIHPR*
Ga0068868_1008434162	3300005338	Miscanthus Rhizosphere	MDLMDGLFEFLGLIAVTVSGWIVTRQVRLRMGKSLGKTPSDLELASLNTWMRVEEAEQREEESRPIHPR*
Ga0070709_102108652	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MDVVSTIYIFGVMIAMAISGWLVTRQVRRRMKKTLGRNPNDLEMASLKTWMQVDEAEDRDRQSGPIHPR*
Ga0070709_102800351	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MFDLFDGLFEFGAVIAVTLSGWIVTRQVRRRMTKSLGRSATDLELASLKTWMRVEETEQREKESGAIHPL*
Ga0070709_105441882	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MFDAIDTLIGFAAVIALTVSGWIVTMRVRRRMKKSLGRRATDLELASLNTWMRVEEAEQREKESGPIHPR*
Ga0070709_112122611	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MDFLDGLFEFVGAIAVKVSEWKVTRQVRLRMGKSLGKTPSDLELASLNTWMRVEEAEQREEESSPIHPR*
Ga0070713_1001080632	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MFDLFDGLFEFGAVIAVIFSGWIVTRQVRRRMTKSLGRSASDLELASLKTWMRVEETELREKESSAIHPR*
Ga0070713_1002408343	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MDLLDGLFEYVEVLAVKVSEWKVTRQVRLRMGKSLGKTPTDLELASLKTWMKVEEREQQEKVSGPVHSK*
Ga0070713_1024206002	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MFDVFDAFVGFVAMIALTVSGWIVTRQVQRRMKKSLGREASDLELASLKTWMKVEEVEQREKESGPIHPR*
Ga0070710_112297182	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MFDMFDMTDGLSGITKAIVMTVSEWIVTLRARRRMKKSLGRSATDLELASLKTWMRVKEAEQR
Ga0070711_1000391574	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MDIDIFDGLFDFAVVIGMTVSAWIVTRQVRLRMSKTLGKTPSDLEMASLKTWMQVDEAEQRDKQRSSIHPS*
Ga0070711_1002207062	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MFDDIDTLSEIAAAIALTVSGWIITMKMRSRMQRSLGRKASDLELASLNTWMKVEEAEQREKESGAIHPR*
Ga0073909_100428052	3300005526	Surface Soil	MDLIDGVFEFGIVIGVTVSGWIVTREVRRRMRKSLGRTPSDLELASLKTWMQVEQDEELREATKPIHPK*
Ga0070739_100678752	3300005532	Surface Soil	MWTSNRRLGSAIVATLSEWIVTLRARRRMKKSLGRKATDLELASLTTWMRVEEAEQRDEESRPIHPR*
Ga0070734_100048948	3300005533	Surface Soil	MFDAIDTLVGFAAMIALAISGWIVTTRVRRRMKKSLGRKATDLELASLKTWMRVEETEQRDKQSGPIHPR*
Ga0070684_1012970751	3300005535	Corn Rhizosphere	MFDTFDTLIGIVGLIALTVSGWIVSLQVRRRMKKSLGRKATNLELASLNTWMRVAEAEQ
Ga0070730_101439324	3300005537	Surface Soil	MFDGIGTLYTLYIVGFAIALTVSGWIVTERVRRRMKKSLGRKATDLELASLKTWMRVEETEQRDKQSGPIHPR*
Ga0070732_100232235	3300005542	Surface Soil	MFDVFDAFVGFVAMIAVAISGWIVTRQVRRRMKKSLGRSASDLELASLKTWMAVEERERQEKESSPIHPR*
Ga0070693_1001179343	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MGDFLFDGFFEFLGVIAVTVSAWIVTRQVRLRMRKSLGKTPSDLELASLKTWMKVEEAEQRERETSPIHPK*
Ga0070693_1004080581	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MDLLDGLFGFGGALAATISEWIVTGRARRRMGKSLGKTPSDLELASLKTWMRVEETEQREEESRPIHPG*
Ga0066661_100045712	3300005554	Soil	MIGSFHELYLLAMAIALTVSGWIVTIRVRRRIRKALGRKATDLELVSLNTWMQVDEAEKKKRENLPIHPR*
Ga0068855_1010193013	3300005563	Corn Rhizosphere	MFDTFDTLIGIVGLIALTVSGWIVSLQVRRRMKKSLGRKATNLELASLNTWMRVAEAEQWDKESRPIHPR*
Ga0068856_1009653002	3300005614	Corn Rhizosphere	MDDFLVDGFFDFLGLIAVTVSAWIVTRQVQRRMRKSLGKTPTDLELASLKTWMKVEEAEQQEKESSAIHPR*
Ga0070717_100811122	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MDFLDGLFEFVGAIAVKASEWKVTREVRLRMGKSLGKTPTDLELASLKTWMKVEEREQQEKVSGPVHSK*
Ga0070717_105801352	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MFDLFDGLFEFGAVIAVTLSGWIVTRQVRRRMRKSLGRSATDLELASLKTWMRVEETEQREKESGAIHPL*
Ga0070717_108697751	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	KDRPMFDVFDTLVEFVAVIALTISGWIVTRQVQRRMKKSLGREASDLELASLKTWMKVEEREQQEKESDPIHPR*
Ga0075023_1000684181	3300006041	Watersheds	MFDVLDGLYIFAGVIAATISGWIVTRKVQQRMKTTLGRKATDLELASIKTWME
Ga0070715_106197901	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MFDLLDGLFEFGAVIAVTLSGWIVTRQVRRRMTKSLGRSATDLELASLKTWMRVEETEQREKESGAIHPL*
Ga0070715_107567482	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MFDVFDAFVGFVAMIAVAISGWIVTRQVRRRMKKSLGRSASDLELASLKTWMKVEEREQQEKESSPIHPR*
Ga0070716_1004995192	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MDFLDGLFEFLGAIAVKVSEWKVTRQVRLRMGKSLGKTPTDLELASLKTWMKVEEREQQEKVSDPIHPR*
Ga0070712_1007620681	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MFDDLDTLFEFGAVIALTISGWIVTMRVRRRMKKSLGRRASDLELASLKSWMRVEEAEQREKESGPIHPR*
Ga0079222_107117052	3300006755	Agricultural Soil	MFDVLDAFVGFVAMIAVAISGWIVTRQVRRRMKKSLGRSASDLELASLKTWMAVEEREQQEKESSPIHPR*
Ga0105241_121426342	3300009174	Corn Rhizosphere	MFDVFDTLVEIVAVIALTVSGWIVTNTVRRRMKKSLGRRATDLELASLKTWMAVEETEQREKESSPIHPR*
Ga0105238_104269212	3300009551	Corn Rhizosphere	MDLIDGLFEFLGVIAVTVSGWIVTKQVRRRMQKSLGREASDLELASLKTWMRVEEAEQRDKESSPIHPR*
Ga0105238_111827762	3300009551	Corn Rhizosphere	MDLLDGLFGFGGALAATISEWIVTGRARRRMRKSLGKTPSDLELASLKTWMRVEETEQREDESRPIHPR*
Ga0105238_117521922	3300009551	Corn Rhizosphere	MGDFLFDFFEFFGVIAVTISAWLVTRQVRGRMRKSLGKTPSDLELASLKTWMRVEEAEQREEESGPIHPR*
Ga0134125_103980872	3300010371	Terrestrial Soil	MGDFLFDGFFEFLGVIAVTVSAWIVTRQVRLRMRRSLGKTPSDLELASLKTWMKVEEAEQRERETSPIHPK*
Ga0134128_106032272	3300010373	Terrestrial Soil	MGDFLFDFFEFLGVIAVTVSAWIVTRQVRLRMRKSLGKTPSDLELASLKTWMKVEEAEQRERETSPIHPK*
Ga0134128_113915562	3300010373	Terrestrial Soil	DDIDTLFEFGAVIVLTISGWIVTMRVRRRMKKSLGRRASDLELASLKSWMRVEEAEQREKESGPIHPR*
Ga0134128_115357962	3300010373	Terrestrial Soil	MDLVDGLFEFLSLIAVKVSEWKVTREVRLRMGKSLGKTPTDLELASLKTWMRVEETEQRKQESRPIHPR*
Ga0105239_111270542	3300010375	Corn Rhizosphere	MFDTSDGLYGITKAIVATVSEWIVTLRTRRRMKKSLGRKASDLELASLKTWMRVEETEQREQESRPIHPR*
Ga0126381_1000444333	3300010376	Tropical Forest Soil	MFDAIDTLIELVVVIAAVVSAWVVTGQVRRRVKASLGKTPTDLELASLKTWMKVDEREQQEKESGPVHPK*
Ga0134126_107994913	3300010396	Terrestrial Soil	MDEFLFDGFFEFLGVIAVTVSAWIVTRQVRLRMRKSLGKTPSDLELASLKTWMKVEEAEQRERETSPIHPK*
Ga0134124_105196452	3300010397	Terrestrial Soil	MFDDIDTLFEFGAVIALTISGWIVTMRVRRRMKKSLGRRASDLELASLKSWMRVEEAEQREKESGPIHPR*
Ga0134124_122490941	3300010397	Terrestrial Soil	MIRLLVLGVFMVGTTVSGWIVAVRMRRRMKKSLGRNATDLDLVSLNTWMRVDETEQKNRQSQPIHPR*
Ga0126383_100102781	3300010398	Tropical Forest Soil	MDFLDGLFEFVGAMAVKASEWKVTRQVRRRMGKSLGKTPSDLELASLNTWMKVEEREQEEKESAPIHPR*
Ga0126383_100751264	3300010398	Tropical Forest Soil	MDFLDGLFEFVGAIAVKVSEWKVTRQVRGRMGKSLGKTPSDLELASLKTWMKVEEREQQEKVSGPVHSE*
Ga0137380_100124197	3300012206	Vadose Zone Soil	MFDAIDTLYVLAAVIAATVSGWIVTMQVRRRMKKSMGRRATDLELASLKTWMKVEEAEQREKESGPIHPG*
Ga0150985_1152005961	3300012212	Avena Fatua Rhizosphere	GRPAMDLIDGFFEFLGVIAVTVSAWIVTRQVRHRMRKSLGKTPTDLEFASLNTWMRVEEAEQRDKESSPIHPR*
Ga0137398_105326511	3300012683	Vadose Zone Soil	MFDIIGGLYVFAAVIAAAISGWIVTIQVRRRMKKSLGRKATDLELASLKTWMRVKETEQ
Ga0137397_109909222	3300012685	Vadose Zone Soil	MFDVLDTLVGFGAMIALTISGWIVTLRVRRRMKKSLGRKATDLELASLKTWMAVKEAEQREEESRAIHPR*
Ga0137419_116005202	3300012925	Vadose Zone Soil	MFDVLDTLVGFGAMIALAVSGWIVTMRVRRRMKKSLGRKATDLELASLKTWMAVKEAEQREEESRAIHPR*
Ga0137407_106741582	3300012930	Vadose Zone Soil	MFDAIDSLVGFVAVIALTISGWIVTIQVRRRMKKSLGRKATDLELASLKTWMAVEEAEQREEESGPIHPR*
Ga0164300_100998193	3300012951	Soil	MFDIDIFDGLIEFAAVIALTVSGWIVTKQVRRRRKKSLGRRATDLELTSLKTWMAVEETEQREKESSPIHPR*
Ga0164298_111884352	3300012955	Soil	MGDFVIDGFFEFLGVIAVTVSAWIVTRQVRRRMRQSLGETPTDLELTSLKTWMKVEEAEQREKESGPVQPR*
Ga0164303_104522182	3300012957	Soil	MFDLLDGLFEFGAVIAVTLSGWIVTRQVRRRMGKSLGKTPTDLELASLKTWMKVEEAEQREKESGPIHTR*
Ga0164299_100552122	3300012958	Soil	MFDVFDTLVEIVAVIALTVSGWIVTNTVRRRMKKSLGRRATDLELTSLKTWMAVEETEQREKESSPIHPR*
Ga0164301_106250312	3300012960	Soil	MFDMFDMTDGLSGITKAIVMTVSEWIVTLRVRRRMKKSLGRSATDLELASLKTWMRVKEAEQREKESSPIHPR*
Ga0164301_112844092	3300012960	Soil	MDDFLIGGFFEFLGVIAVTVSAWIVIWQVRRRMRQSLGEIFTDLELTSFKTWMKVEEAEQWEKESGLVQPR*
Ga0164302_103627422	3300012961	Soil	MFDVFDTLVEIVAVTALTVSGWIVTNTVRRRMKKSLGRRATDLELASLKTWMAVEETEQREKESSPIHPR*
Ga0164308_102724532	3300012985	Soil	MFDAFDFIDGLVGFVAVIALTVSGWIVTKQVRRRMQKSLGRSASDLELASLNAWMRVEEA
Ga0164308_103318712	3300012985	Soil	MFDLLDGLFEFGAVIAVTLSGWIVTRQVRRRMRKSLGRSATDLELASLKTWMRVEETEQREKESGAIHPL*
Ga0164304_106821512	3300012986	Soil	MFDAIDTLFGFAAMIALAVSGWIVTTRVRRRMKKSLGRNATDLELASLKTWMRVEEAEQRDKQSSPIHPR*
Ga0164305_105520941	3300012989	Soil	MFDLFDGLFEFGAVIAVTLSGWIVTRQVRRRMRKSLGRSATDLELASLKTWMRVEETEQREKE
Ga0164305_108834602	3300012989	Soil	MFDAIGTLHILGVVIGAAFSGWIVTMQVQRRMKKSLGRNATDLELASLKTWMRVEEAEQREEESSPIHPH*
Ga0157369_122814202	3300013105	Corn Rhizosphere	MDLIDGLFEFLGVIAVTVSAWIVTRQVRRRMRKSLGKTPTDLELASLNTWMRVEETEQREKESGPIHPH*
Ga0157374_111530141	3300013296	Miscanthus Rhizosphere	MFDDLDTLFEFGAVIALTISGWIVTMRVRRRMKKSLGRKATDLELASLKTWMRVEEAEQREKESGPIHPR*
Ga0163162_116525801	3300013306	Switchgrass Rhizosphere	MDLVDGLFEFLGLIAVKVSEWKVTREVRLRMGKSLGKTPTDLELASLNTWMRVEETEQREKESGPIHPH*
Ga0066662_1000036714	3300018468	Grasslands Soil	MIGSFHELYLLAMAIALTVSGWIVTIRVRRRIRKALGRKATDLELVSLNTWMQVDEAEKKKRENLPIHPR
Ga0066662_109427082	3300018468	Grasslands Soil	MFDGIGTLYTLYIVGFAIALTVSGWIVTVRARRRMKKSLGRKATDLELASLKTWMRVKETEQREEESRPIRPL
Ga0066662_111473022	3300018468	Grasslands Soil	MIGTLHTLVLLGMMIAITISGWIITIRVRRRMRKALGKKASDLELASLKTWMQVEETEERKRQSSPINPR
Ga0126371_137590171	3300021560	Tropical Forest Soil	MDFLDGLFEFVGAIAVKVSEWKVTRQVRLRMGKSLGKTPTDLELASLKTWMKVDEREQQEKVSGPVHSK
Ga0207692_107637711	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MFDDIDILLDFAAVIALALSGWIVTMRVRRRMKKSLGRSASDLELASLNTWMRVEEAEQREEESSPIHPR
Ga0207692_109625091	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MFDLFDGLFEFGAVIAVTLSGWIVTRQVRRRMTKSLGRSATDLELASLKTWMRVEETEQREKESGAIHP
Ga0207685_105435262	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MFDLFDGLFEFGAVIAVTLSGWIVTRQVRRRMTKSLGRSATDLELASLKTWMRVEETEQREKESGAIH
Ga0207685_108183261	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MFDVFDMLIDLAAVIAVAVSGWIVTRQVRRRMKKSLGRSASDLELASLKTWMKVEEREQQEKESSPIHPR
Ga0207699_102004132	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MFDAIDTLIGFAAVIALTVSGWIVTMRVRRRMKKSLGRRATDLELASLNTWMRVEEAEQREKESGPIDPR
Ga0207699_107742052	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	AVIALALSGWIVTMRVRRRMKKSLGRSASDLELASLNTWMRVEEAEQREQESGPIHPR
Ga0207663_108791581	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VEFLIDGLFEFVAVIAVGVSAWIVTRQVQRRMRKSLGRSATELELASLKTWMKVEEA
Ga0207660_104946682	3300025917	Corn Rhizosphere	MDLIDGLFEFVAVIAVTVSAWIVTRQVRRRMRKSLGKTPTDLELASLKTWMRVEETERREEESRPIHPR
Ga0207660_115625792	3300025917	Corn Rhizosphere	MFDTFDTQIGIVGLIALTVSGWIVSLRVRRRMKKSLGRKASDLELASLKTWMRVEETEQRDKESSPIHPC
Ga0207694_107106482	3300025924	Corn Rhizosphere	MDLLDGLFGFGGALAATISEWIVTGRARRRMRKSLGKTPSDLELASLKTWMRVEETEQREDESRPIHPR
Ga0207694_112678382	3300025924	Corn Rhizosphere	MDLIDGLFEFLGVIAVTVSAWIVTRQVRRRMQKSLGREASDLELASLKTWMRVEEAEQRDKESSPIHPR
Ga0207694_113428012	3300025924	Corn Rhizosphere	MGDFLFDFFEFLGVIAVTVSAWIVTRQVRLRMRKSLGKTPSDLELASLKTWMKVEEAEQRERETSPIHPK
Ga0207687_102986082	3300025927	Miscanthus Rhizosphere	MGDFLFDGFFEFLGVIAVTVSAWIVTRQVRLRMRRSLGKTPSDLELASLKTWMKVEEAEQRERETSPIHPK
Ga0207700_101957593	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MDLLDGLFEYVEVLAVKVSEWKVTRQVRLRMGKSLGKTPTDLELASLKTWMKVEEREQQEKVSGPVHSK
Ga0207700_107902062	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MFDAIDSLIGFVAVIALTISGWIVTMQVRRRMKKSLGRSATDLELASLKTWMKVEEREQQEKESDPIHPR
Ga0207700_114614211	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MFDVFDTLVEFVAVIALTISGWIVTRQVQRRMKKSLGREASDLELASLKTWMAVEEREQQEKKSAPIHPR
Ga0207664_115135512	3300025929	Agricultural Soil	DGLFGFAAIIALTVSGWIVSSRVRRRMRKSLGRSASDLELASLKTWMKVEEREQQEKENSPIHPR
Ga0207661_100742423	3300025944	Corn Rhizosphere	MFDTFDTQIGIVGLIALTVSGWIVSLQVRRRMKKSLGRKATNLELASLNTWMRVAEAEQWDKESRPIHPR
Ga0207661_101235735	3300025944	Corn Rhizosphere	MDLLDGLFGFGGALAATISEWIVTGRARRRMGKSLGKTPSDLELASLKTWMRVEETEQREDESRPIHPR
Ga0207667_108342673	3300025949	Corn Rhizosphere	MFDTFDTLIGIVGLIALTVSGWIVSLQVRRRMKKSLGRKATNLELASLNTWMRVAEAEQWDKESRPIHPR
Ga0207639_118466342	3300026041	Corn Rhizosphere	MDLLDGLFGFGGALAATISEWIVTGRARRRMGKSLGKTPSDLELAWLKTWMRVEETEQREDESRPIHPR
Ga0207698_110018462	3300026142	Corn Rhizosphere	MGDFLFDFFEVFGVIAVTISAWLVTRQVRGRMRKSLGKTPSDLELASLNTWMRVEEAEQREEESRPIHPR
Ga0179593_10373351	3300026555	Vadose Zone Soil	MFDVLDTLVGFGAMIALAVSGWIVTMRVRRRMKKSLGRKATDLELASLKTWMAVKEAEQREEESRAIHPR
Ga0209810_11274013	3300027773	Surface Soil	MWTSNRRLGSAIVATLSEWIVTLRARRRMKKSLGRKATDLELASLTTWMRVEEAEQRDEESRPIHPR
Ga0209811_101951152	3300027821	Surface Soil	MDLIDGVFEFGIVIGVTVSGWIVTREVRRRMRKSLGRTPSDLELASLKTWMQVEQDEELREATKPIHPK
Ga0209060_100060756	3300027826	Surface Soil	MFDAIDTLVGFAAMIALAISGWIVTTRVRRRMKKSLGRKATDLELASLKTWMRVEETEQRDKQSGPIHPR
Ga0209580_100030542	3300027842	Surface Soil	MFDIDIFDGLIEFAAVIALTVSGWIVTKQVRRRMQKSLGRKPADLELASLNTWMRVEEAEQRDKESSSIHPR
Ga0209580_100038796	3300027842	Surface Soil	MFDVFDAFVGFVAMIAVAISGWIVTRQVRRRMKKSLGRSASDLELASLKTWMAVEERERQEKESSPIHPR
Ga0209166_107105722	3300027857	Surface Soil	MFDGIGTLYTLYIVGFAIALTVSGWIVTERVRRRMKKSLGRKATDLELASLKTW
Ga0170834_1127232932	3300031057	Forest Soil	MFSSISTLYVLGFAITLTVSGWIVTVRARRRMKKSLGRKATDLELASLKTWMAVEEAEQRDKESSPIHPR
Ga0170822_161620713	3300031122	Forest Soil	LTVFFEFLAVIAVTVSAWIVTRQVRLRMSKTLGKTPSDLEMASLKTWMQVDEAEQRDKQSSSIHPS
Ga0170823_145574521	3300031128	Forest Soil	MFSSISTLYILGFAITLTVSGWIVTVRARRRMKKSLGRKATDLELASLKTWMAVEEAEQRDKESSPIHPS
Ga0170824_1240749682	3300031231	Forest Soil	MFSSISTLYILGSVIALTVSGWIVTIRVRRRMRKSLGRTPSDLELASLKTWMQVEQEEELREATKPLHPR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086220

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences