Metagenome / Metatranscriptome Family F086213

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086213
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	112 residues
Representative Sequence	VGRAGRSGRRERRFTLRGALVTVAGRWQLEPGDAEVRVRLTLDYEIAPDLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCERVRAHLDGRPA
Number of Associated Samples	101
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.70 %
% of genes near scaffold ends (potentially truncated)	96.40 %
% of genes from short scaffolds (< 2000 bps)	92.79 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (13.514 % of family members)
Environment Ontology (ENVO)	Unclassified (26.126 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.144 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.82% β-sheet: 21.64% Coil/Unstructured: 42.54%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF00528	BPD_transp_1	31.53
PF12911	OppC_N	6.31
PF10604	Polyketide_cyc2	3.60
PF13520	AA_permease_2	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	78.38 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	4.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.70 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	78.38 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.70 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	78.38 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.70 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.70 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	78.38 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.70 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.90 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.90 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	78.38 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.70 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.90 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.90 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	78.38 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.70 %
Mycolicibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	0.90 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.90 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	78.38 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.70 %
Mycolicibacterium smegmatis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium smegmatis	0.90 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.90 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_10254640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium smegmatis	1477	Open in IMG/M
3300002245\|JGIcombinedJ26739_101144020	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	666	Open in IMG/M
3300004463\|Ga0063356_106196143	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	513	Open in IMG/M
3300005332\|Ga0066388_100770222	All Organisms → cellular organisms → Bacteria	1559	Open in IMG/M
3300005332\|Ga0066388_101925028	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1057	Open in IMG/M
3300005336\|Ga0070680_100259468	All Organisms → cellular organisms → Bacteria	1470	Open in IMG/M
3300005343\|Ga0070687_100831884	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300005364\|Ga0070673_100109484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2289	Open in IMG/M
3300005436\|Ga0070713_101091962	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	771	Open in IMG/M
3300005437\|Ga0070710_10951928	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	623	Open in IMG/M
3300005439\|Ga0070711_100281341	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1316	Open in IMG/M
3300005444\|Ga0070694_100672301	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	840	Open in IMG/M
3300005457\|Ga0070662_100446356	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1073	Open in IMG/M
3300005467\|Ga0070706_101705194	All Organisms → cellular organisms → Bacteria → Proteobacteria	574	Open in IMG/M
3300005471\|Ga0070698_100280929	All Organisms → cellular organisms → Bacteria	1596	Open in IMG/M
3300005518\|Ga0070699_100539167	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M
3300005526\|Ga0073909_10089972	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1195	Open in IMG/M
3300005536\|Ga0070697_101598697	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	583	Open in IMG/M
3300005545\|Ga0070695_100885641	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	720	Open in IMG/M
3300005545\|Ga0070695_101131136	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	642	Open in IMG/M
3300005546\|Ga0070696_100746351	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	801	Open in IMG/M
3300005552\|Ga0066701_10513168	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	741	Open in IMG/M
3300005713\|Ga0066905_100751275	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	841	Open in IMG/M
3300005713\|Ga0066905_101887853	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	552	Open in IMG/M
3300005764\|Ga0066903_102937848	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	924	Open in IMG/M
3300005764\|Ga0066903_107040187	All Organisms → cellular organisms → Bacteria → Proteobacteria	583	Open in IMG/M
3300005764\|Ga0066903_107434325	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300005764\|Ga0066903_108574688	All Organisms → cellular organisms → Bacteria → Proteobacteria	521	Open in IMG/M
3300005844\|Ga0068862_100083429	All Organisms → cellular organisms → Bacteria	2775	Open in IMG/M
3300006028\|Ga0070717_11265108	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	671	Open in IMG/M
3300006163\|Ga0070715_10797027	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	573	Open in IMG/M
3300006172\|Ga0075018_10045348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1813	Open in IMG/M
3300006755\|Ga0079222_11775420	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	595	Open in IMG/M
3300006806\|Ga0079220_11843090	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	534	Open in IMG/M
3300006871\|Ga0075434_100451071	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1307	Open in IMG/M
3300007076\|Ga0075435_100571699	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	979	Open in IMG/M
3300009012\|Ga0066710_102680336	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	712	Open in IMG/M
3300009088\|Ga0099830_11170999	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	638	Open in IMG/M
3300009174\|Ga0105241_12125689	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	555	Open in IMG/M
3300009176\|Ga0105242_10543454	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1113	Open in IMG/M
3300009176\|Ga0105242_12136877	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	604	Open in IMG/M
3300009177\|Ga0105248_10546373	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1307	Open in IMG/M
3300009792\|Ga0126374_10389920	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	969	Open in IMG/M
3300010043\|Ga0126380_11429172	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	609	Open in IMG/M
3300010047\|Ga0126382_10907196	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	763	Open in IMG/M
3300010047\|Ga0126382_11792515	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	577	Open in IMG/M
3300010360\|Ga0126372_10711825	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	982	Open in IMG/M
3300010360\|Ga0126372_11835483	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	650	Open in IMG/M
3300010398\|Ga0126383_10457326	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1327	Open in IMG/M
3300010400\|Ga0134122_11455541	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	702	Open in IMG/M
3300011269\|Ga0137392_10598370	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	915	Open in IMG/M
3300012189\|Ga0137388_10504961	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1123	Open in IMG/M
3300012205\|Ga0137362_11081644	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	682	Open in IMG/M
3300012359\|Ga0137385_11363761	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	572	Open in IMG/M
3300012362\|Ga0137361_10510967	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1103	Open in IMG/M
3300012906\|Ga0157295_10006620	All Organisms → cellular organisms → Bacteria	1898	Open in IMG/M
3300012948\|Ga0126375_11170259	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	638	Open in IMG/M
3300012989\|Ga0164305_10607213	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	880	Open in IMG/M
3300015241\|Ga0137418_10142706	All Organisms → cellular organisms → Bacteria	2116	Open in IMG/M
3300015372\|Ga0132256_102496556	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	618	Open in IMG/M
3300017659\|Ga0134083_10552601	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	521	Open in IMG/M
3300017961\|Ga0187778_10006487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7543	Open in IMG/M
3300018422\|Ga0190265_13772052	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	505	Open in IMG/M
3300020062\|Ga0193724_1072894	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	716	Open in IMG/M
3300020082\|Ga0206353_10730810	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	580	Open in IMG/M
3300020579\|Ga0210407_10808038	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	723	Open in IMG/M
3300024288\|Ga0179589_10190915	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	892	Open in IMG/M
3300025160\|Ga0209109_10481236	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	567	Open in IMG/M
3300025903\|Ga0207680_10209541	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1332	Open in IMG/M
3300025917\|Ga0207660_10247455	All Organisms → cellular organisms → Bacteria	1406	Open in IMG/M
3300025918\|Ga0207662_10754604	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	684	Open in IMG/M
3300025922\|Ga0207646_11245112	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	651	Open in IMG/M
3300025928\|Ga0207700_10956118	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	767	Open in IMG/M
3300025933\|Ga0207706_10148503	All Organisms → cellular organisms → Bacteria	2062	Open in IMG/M
3300025937\|Ga0207669_11317545	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	614	Open in IMG/M
3300025960\|Ga0207651_11597123	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	587	Open in IMG/M
3300025961\|Ga0207712_10576145	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	971	Open in IMG/M
3300026005\|Ga0208285_1021527	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	535	Open in IMG/M
3300026011\|Ga0208532_1007491	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	685	Open in IMG/M
3300026358\|Ga0257166_1003806	All Organisms → cellular organisms → Bacteria	1631	Open in IMG/M
3300026475\|Ga0257147_1013378	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1106	Open in IMG/M
3300026481\|Ga0257155_1013109	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1133	Open in IMG/M
3300026496\|Ga0257157_1038010	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	800	Open in IMG/M
3300027360\|Ga0209969_1078577	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	527	Open in IMG/M
3300027364\|Ga0209967_1065974	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	563	Open in IMG/M
3300027395\|Ga0209996_1006550	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1506	Open in IMG/M
3300027605\|Ga0209329_1133718	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	546	Open in IMG/M
3300027651\|Ga0209217_1192415	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	551	Open in IMG/M
3300027727\|Ga0209328_10155933	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	694	Open in IMG/M
3300027787\|Ga0209074_10076514	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1084	Open in IMG/M
3300027846\|Ga0209180_10289929	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	939	Open in IMG/M
3300028715\|Ga0307313_10057024	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1152	Open in IMG/M
3300028811\|Ga0307292_10143132	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	962	Open in IMG/M
3300028828\|Ga0307312_10011897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4809	Open in IMG/M
3300028881\|Ga0307277_10137391	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1055	Open in IMG/M
3300031716\|Ga0310813_10573345	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	995	Open in IMG/M
3300031720\|Ga0307469_11379814	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	671	Open in IMG/M
3300031740\|Ga0307468_100058197	All Organisms → cellular organisms → Bacteria	2068	Open in IMG/M
3300031794\|Ga0318503_10304125	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	518	Open in IMG/M
3300031854\|Ga0310904_11112068	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	567	Open in IMG/M
3300031908\|Ga0310900_10507753	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	938	Open in IMG/M
3300031949\|Ga0214473_10287694	All Organisms → cellular organisms → Bacteria	1880	Open in IMG/M
3300031962\|Ga0307479_10055846	All Organisms → cellular organisms → Bacteria	3803	Open in IMG/M
3300032013\|Ga0310906_11190470	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	554	Open in IMG/M
3300032075\|Ga0310890_10561075	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	878	Open in IMG/M
3300032164\|Ga0315283_12463284	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	505	Open in IMG/M
3300032205\|Ga0307472_100107715	All Organisms → cellular organisms → Bacteria	1936	Open in IMG/M
3300032205\|Ga0307472_100969970	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	793	Open in IMG/M
3300032893\|Ga0335069_12371625	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	552	Open in IMG/M
3300033550\|Ga0247829_11488866	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	559	Open in IMG/M
3300034818\|Ga0373950_0023610	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1101	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.98%
Host-Associated	Host-Associated	18.02%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.18%
Plants	Host-Associated → Plants	18.02%
Aquatic	Environmental → Aquatic	1.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.51%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.50%
Freshwater	Environmental → Aquatic → Freshwater	0.90%
Sediment	Environmental → Aquatic → Sediment	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.65%
Loam	Environmental → Terrestrial → Soil → Loam	27.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.31%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.60%
Lake	Environmental → Aquatic → Freshwater → Lake	0.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	17.12%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.31%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.50%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.60%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.70%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.70%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.90%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.90%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	13.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.11%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.11%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.21%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.41%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.60%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	3.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.80%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.80%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.80%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.80%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.90%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.90%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.90%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026005	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_101 (SPAdes)	Environmental	Open in IMG/M
3300026011	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_301 (SPAdes)	Environmental	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026475	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300027360	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027364	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM (SPAdes)	Host-Associated	Open in IMG/M
3300027395	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_102546401	3300000891	Soil	GGHRERRFTLRGELVTISGRWRLEPTDAGVRVRLTLDYDIAGPLKTLAVNTLRSRSPLPIRTDADEILSRAVDEFFETRFAEQAADYCERLRTRLEGTKAGRPA*
JGIcombinedJ26739_1011440202	3300002245	Forest Soil	DLPIVDRQEQAATLSVGRAGKAGHRERRFTLRGALVTIAGRWQLVPGDAGVRVRLTLDYEIAPELKTHAVNTLRSRSPLPIRTDADAILSRAVDEFFATRFTEQAAAYCEQVRARLDGRPA*
Ga0063356_1061961431	3300004463	Arabidopsis Thaliana Rhizosphere	LDHALDLPIVDRQEQTATLTIGRSGMNGHRERRFTLRGDLVTITGRWRLEPAGAGVRVHLTLDYDIAAPLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFTEQAVTYCERLRERLEQPKQGQTA*
Ga0066388_1007702223	3300005332	Tropical Forest Soil	RGALAHALDLPIVEPHEQTATLRVGRGGADGRRERRFTVRGELVTIAGRWRIEPAEGGVRVHLTLDYDIAPALKEHAVNTLRSRSPLPIRTDADAILSRAVDDYFETRFAEHAAAYCERLRERLGSPRAS*
Ga0066388_1019250282	3300005332	Tropical Forest Soil	ERRFAMRGPLVTISGRWRLEPGPDGVRVQLTLEYELAPPLKTLAVDTLRSRSPLPIRTDADAILSRAVDEFFETRFTEQAAAYCERLRDWLQAVRPHRARRA*
Ga0070680_1002594683	3300005336	Corn Rhizosphere	GPLVTISGRWRLEPGPDGVRVQLTLDYDIAPSLKALAVDTLRSRSPLPIRTDADAILSRAVDEFLETRFTEQAAAYCERLREGLQAARRRAARRA*
Ga0070687_1008318841	3300005343	Switchgrass Rhizosphere	APAGDHRERRFGLRGPLVSIAGRWELTPDDDGVRVRLTLDYEIAPDLKALAVNTLRSRSPLPIRTDADAIMSRAVDEFFETRFTEQAAAYCSALRERLDARPA*
Ga0070673_1001094843	3300005364	Switchgrass Rhizosphere	RQEQTATLIVKRAPAGDHRERRFGLRGPLVSIAGRWELTPDDDGVRVRLTLDYEIAPDLKALAVNTLRSRSPLPIRTDADAIMSRAVDEFFETRFTEQAAAYCSALRERLDARPA*
Ga0070713_1010919621	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	GHRERRFTLRGALVTIAGRWQLEPGDAGVRVRLTLDYEIAPELKTHAVNTLRSRSPLPIRTDADAILSRAVDEFFATRFTEQAAAYCEQVRARLDGRPA*
Ga0070710_109519281	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	GHRERRFTLRGALVTIAGRWQLEPGDAGVRVRLTLDYEIAPELKTHAVNTLRSRSPLPIRTDADAILSRAVDEFFATRFTEQATAYCEKVRARLDGQPA*
Ga0070711_1002813411	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	QEQAATLSVGRAGKAGHRERRFTLRGALVTIAGRWQLEPGDAGVRVRLTLDYEIAPELKTHAVNTLRSRSPLPIRTDADAILSRAVDEFFATRFTEQAAAYCEQVRARLDGRPA*
Ga0070694_1006723011	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	TATLSVGRAGRSGRRERRFTLRGALVTVAGRWQLEPGDAEVRVRLTLDYEIAPDLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCEQVRAQLSGRPA*
Ga0070662_1004463561	3300005457	Corn Rhizosphere	QEQTATLTVSRAGKNGRRERCFAMRGPLVTIAGHWRLEPGPDGVRVQLTLEYEVAPPLKTLAVDTLRSRSPLPIRTDADAILSRAVDEFFETRFTEQAAAYCERLRERLEVARPPRTRRA
Ga0070706_1017051942	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	RERRFTLRGELATITGRWRLEPAGAGVRVHLTLDYDIAAALKILAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFTEQAAAYCERLRARLEQSKQGRRVTGLA*
Ga0070698_1002809291	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	GRSGRRERRFTLRGALVTVAGRWQLEPGDAEVRVRLTLDYEIAPDLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCEQVRAQLSGRPA*
Ga0070699_1005391671	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	ERRFTLRGELVTITGCWRLEPAGAGVRVHLTLDYEIAAPLKALAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFTEQAAAYCSALRERLDARPA*
Ga0073909_100899722	3300005526	Surface Soil	GELVTITGCWRLEPAGAGVRAHLTLDYDIAAPLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRLTEQASDYCARLRARLEATTQGQPA*
Ga0070697_1015986971	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	ATLTVGRAGKNGHRERRFTVRGELVTITGRWRLEPAGAGVRVHLTLDYDIAAPLKTLAVNTLRSRSPLPIRTDADAILSRAVDEYFETRFTEQAAAYCERLRARVDPSEQGQPA*
Ga0070695_1008856411	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	GPLVTISGRWRLEPGPDGVRVHLTLDYDIAPSLKTLAVDTLRSRSPLPIRTDADAILSRAVDEFLETRFTEQAAAYCERLREGLQAARRRAARRA*
Ga0070695_1011311361	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	HALDLPIVDRQEQAATLSVGRAGKSGHRERRFTLRGALVTIAGRWQLEPGDAGVRVRLTLDYEIAPELKTHAVNTLRSRSPLPIRTDADAILSRAVDEFFATRFTEQAAAYCEQVRARLDGRPA*
Ga0070696_1007463511	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	GRSGRRERRFTLRGALVTVAGRWQLEPGDAEVRVRLTLDYEIAPDLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCEQVRERLSGQPA*
Ga0066701_105131682	3300005552	Soil	LAHVLDLPIVDRQEQTATLSVGRAARNGRRERRFTLRGELVTVAGCWQLEPGDAAVRVRLTLDYEIAPELKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCERVRAHLDGRPA*
Ga0066905_1007512751	3300005713	Tropical Forest Soil	TLTVSRAGKGGRRERRFTMRGPLVTISGRWGLEPGPDGVRVQLTLEYEVAPPLKTLAVDTLRSRSPLPIRTDADAILSRAVDEFFETRFTEQAAAYCERLRDRLQAVRPHRPRRA*
Ga0066905_1018878531	3300005713	Tropical Forest Soil	DHALDLPIVDPQKQVATLTVARAPRDGHRERRFTLRGELVTITGRWRLEPTDAGVRVRLTLDYDIAPSLKTLAVNALRSRSPLPIRTDADEILSRAVDEFFETRFTEQAADYCGRLRARLETAKAGRLA*
Ga0066903_1029378481	3300005764	Tropical Forest Soil	DRLVQRATLSVARAGRNGHRERRFSLRGSLISVRGCWQLEPCPDGVRLRVDLTYEIAPRLKAQAVNTLRSRSPLPIRTDADAILSRAVDEFFQTHLAAQAVAYCDAMQTHLGEQSA*
Ga0066903_1070401871	3300005764	Tropical Forest Soil	GRAGRNGRRERRFSLRGPVINIAGCWQLEPSEGGVRLHLTLGYEIAPPLKEQAVTTLRSRSPLPIRTDADAILHRAVDEFFQTRLAEQAVAYCDAVRTQLANRST*
Ga0066903_1074343252	3300005764	Tropical Forest Soil	TLHHALDLPIVDRQEQTATLTVSRVGKDGRRERRFAMRGPLVTISGRWRLEPGADGVRVQLTLEYEVAPPLKTLAVDTLRSRSPLPIRTDADAILSRAVDEFFETRFTEQAAAYCERLRDWLQAVRPHRARRA*
Ga0066903_1085746882	3300005764	Tropical Forest Soil	ERRFAMRGPLVTISGRWRLEPGPDGVRVELTLEYEVAPPLKTLAVDTLRSRSPLPIRTDADAILSRAVDEFFETRFTEQAAAYCERLRHGLQAARPQRARRA*
Ga0068862_1000834294	3300005844	Switchgrass Rhizosphere	TLHHALDLPIVDGQEQTATLTVSRAGKNGRRERCFAMRGPLVTIAGRWRLEPGPDGVRVQLTLEYEVAPPLKTLAVDTLRSRSPLPIRTDADAILSRAVDEFFETRFTEQAAAYCERLRERLEVARPPRTRRA*
Ga0070717_112651081	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LVTIAGRWRLEPSDAGVRVRLTLDYEIAPELKTHAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCERVRAHLDGRPA*
Ga0070715_107970272	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	AGHRERRFTLRGALVTIAGRWQLEPGDAGVRVRLTLDYEIAPELKTHAVNTLRSRSPLPIRTDADAILSRAVDEFFATRFTEQAAAYCEQVRARLDGRSA*
Ga0075018_100453483	3300006172	Watersheds	GHRERRFTLRGALVTIAGRWRLEPSDAGVRVRLTLDYEIAPELKTHAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCEQVRERLSGRPA*
Ga0079222_117754201	3300006755	Agricultural Soil	VRGGAKAGPLPHVLDLPIVDRQEQVSTLTVSRAGKDDHRERRFRLRGPLVSIAGRWDLTPDDGVVRVRLTLDYEIAPDLKTLAVNTLRSRSPLPIRTDADAIMSRAVDEFFETRFAEHAAAYCAALRERLDARPA*
Ga0079220_118430902	3300006806	Agricultural Soil	LDLPIVDRQEQASTLTVSRAGKDDHRERRFRLRGPLVSIAGRWDLTPDDGVVRVRLTLDYEIAPDLKTLAVNTLRSRSPLPIRTDADAIMSRAVDEFFETRFAEHAAAYCAALRERLDARPA*
Ga0075434_1004510712	3300006871	Populus Rhizosphere	RERRFTLRGALVTIAGRWQLEPGDAGVRVRLTLDYEIAPGLKTHAVNTLRSRSPLPIRTDADAILSRAVDEFFATRFTEQAAAYCEQVRARLDGRPA*
Ga0075435_1005716991	3300007076	Populus Rhizosphere	HRERRFTLRGALVTIAGRWQLEPGDAGVRVRLTLDYEIAPGLKTHAVNTLRSRSPLPIRTDADAILSRAVDEFFATRFTEQAAAYCEQVRARLDGRPA*
Ga0066710_1026803361	3300009012	Grasslands Soil	RRFALRGPLVSIAGRWQLEPREDGVRLHVTLGYEIAPPLKEQAVNTLRSRSPLPIRTDADAILSRAVDEFFETRLAEQAAAYCDAVRAHLAGRPA
Ga0099830_111709992	3300009088	Vadose Zone Soil	VDRQAQRATLTVSRAGKNGRCERRFTMRGELVTIAGRWRLEPGPEGVRVHLTLDYDIAPPLKTLAVNTLRSRSPLPIRTDADAILGRAVDEFFETRFTEHAVAYCERLRAQLGAPSA*
Ga0105241_121256892	3300009174	Corn Rhizosphere	LSVGRAGRSGRRERRFTLRGALVTVAGRWQLEPGGAEVRVRLTLDYEIAPDLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCEQVRAHLSGRPA*
Ga0105242_105434542	3300009176	Miscanthus Rhizosphere	VLDLPIVDRQEQTATLIVKRAPAGDHRERRFGLRGPLVSIAGRWELTPDDDGVRVRLTLDYEIAPDLKALAVNTLRSRSPLPIRTDADAIMSRAVDEFFETRFTEQAAAYCERLRAGLQAAHPHGTRRA*
Ga0105242_121368772	3300009176	Miscanthus Rhizosphere	AGKNGHRERRFTLRGELVAITGRWRLEPAGAAVRVHLTLDYDIAVPLKTLAVNTLRSRSPLPIRTDADTILSRAVDEFFETRFTEQSAAYCERLRARVEQPKRGQPA*
Ga0105248_105463732	3300009177	Switchgrass Rhizosphere	RFGLRGPLVSIAGRWELTPDDDGVRVRLTLDYEIAPDLKALAVNTLRSRSPLPIRTDADAIMSRAVDEFFETRFTEQAAAYCSALRERLDARPA*
Ga0126374_103899201	3300009792	Tropical Forest Soil	ISAPPAEAGVPRAALRHELDLPIVDRQEQTATLSVRRAGRTRERRFAMRGTAVAIEGCWRLEPGADGVRAHLTLSYEIGDALKTHAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEHARDFCERVRTRFDAGRAS*
Ga0126380_114291722	3300010043	Tropical Forest Soil	MVKIAGRWTLEPAADGVRLHVTLDYDIAPSLKEQAVTTLRSRSPLPIRTDADAILSRAVDEFFETRLGEQAAAYCEAVRAQMATRSA*
Ga0126382_109071962	3300010047	Tropical Forest Soil	DGHRERRFTLRGELVTITGRWRLEPTDSGVRVRLTLDYDIAPSLKTLAVNALRSRSPLPIRTDADEILSRAVDEFFETRFTEQAADYCGRLRARLETAKAGRLA*
Ga0126382_117925152	3300010047	Tropical Forest Soil	VARPSPQPSPREGRERRFTLRGELVTITGRWRLESADAGVRVHLTLDYDIAAPLKTLAVNTLRSRSPLPIRTDADAILSRAVDEYFETRFTEQAAAYCERLRARLEEAKAGRRT*
Ga0126372_107118252	3300010360	Tropical Forest Soil	RGTAVAIEGCWRLEPGADGVRAHLTLSFEIGDALKTHAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEHARDFCERVRTRFDAGRAS*
Ga0126372_118354832	3300010360	Tropical Forest Soil	RGDLVAIAGCWRLEPLDAGVRVHLTLEYDIAAPLKTLAVDTLRSRSPLPIRTDADAILSRAVDEFFETRFADHAAAYCERVGARLEPPARTRGRAGDRA*
Ga0126383_104573261	3300010398	Tropical Forest Soil	MRGAMVTIAGRWQLEPIPDGVHLRLTLDYDIAPPLKALAVDTLRSRSPLPIRTDADAILSRAVDEFFETRFSAQAAEYCERLRARLETRPA*
Ga0134122_114555412	3300010400	Terrestrial Soil	PIVDRQEQTAALTVGRAGKNGHRERRFTLRGELVTITGRWRLEPAGAGVRVHLTLDYDIAAPLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFTDQAAAYCERLRARVEQTKQGQPA*
Ga0137392_105983701	3300011269	Vadose Zone Soil	LVTVAGRWQLEPGDAAVRVRLTLDYEIAPELKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCERVRAHLDGRPA*
Ga0137388_105049612	3300012189	Vadose Zone Soil	VGRAGRSGRRERRFTLRGALVTVAGRWQLEPGDAEVRVRLTLDYEIAPDLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCERVRAHLDGRPA*
Ga0137362_110816442	3300012205	Vadose Zone Soil	GPLQHALDLPIVERVEQTVTLSVSRAGRNGGRERRFALRGPLVSIAGRWRLEPNNDGVRLHVTLDYEIAPLLKEQAVNTLRSRSPLPIRTDAATILSRTVDEFFETRLVEHAAAYCDAVRVHLAGRRA*
Ga0137385_113637612	3300012359	Vadose Zone Soil	LSVGRAARNGRRERRFTLRGELVTVAGCWQLEPGDAAVRVRLTLDYEIAPELKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCERVRAHLDGRPA*
Ga0137361_105109671	3300012362	Vadose Zone Soil	GGPLAHVLDLPIVDRQEQTATLSVGRAGRSGRRERRFTLRGALVTVAGRWQLEPGDAEVRVRLTLDYEIAPDLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCEQVRAHLDGRPA*
Ga0157295_100066201	3300012906	Soil	QEQVATLRIDRPSRPSPLEGRGQGEGGHRERRFTLRGELVTISGRWRLEPTDAGVRVRLTLDYDIAGPLKTLAVNTLRSRSPLPIRTDADEILSRAVDEFFETRFAEQAADYCERLRTRLEGTKAGRPA*
Ga0126375_111702592	3300012948	Tropical Forest Soil	ERRFSLRGPMVSIAGCWTLEPAHDGVRLCVTLVYDIVPSLKEQAVTTLRSRSPLPIRTDADAILSRAVDEFFETRLAEHAAAYCDAVRAQIATRSA*
Ga0164305_106072131	3300012989	Soil	GPLAHVLDLPIVDRQEQTATLIVKRAPAGDHRERRFGLRGPLVSIAGRWELTPDDDGVRVRLTLDYEIAPDLKALAVNTLRSRSPLPIRTDADAIMSRAVDEFFETRFTEQAAAYCAALRERLDGRPA*
Ga0137418_101427061	3300015241	Vadose Zone Soil	KDGRRERRFTMRGPLVTISGRWRLEPGPDGVRVRLTLDYDIAPPLKTLAVNTLRSRSPLPIRTDADAIMSRAVDEFFETRFTEQATAYCARLRGRLDAAGPRAAHRG*
Ga0132256_1024965561	3300015372	Arabidopsis Rhizosphere	RGTFHHALDLPIVDRQEQTATLTVSRTGKDGRERRFTIRGRLVTISGRWRLEPGPNGVRVQLTLDYDIAPPLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCERLRDRLQAVRPHRVRRA*
Ga0134083_105526012	3300017659	Grasslands Soil	ERRFALRGPLVSIAGRWRLEPNNDGVRLHVTLDYEIAPLLKEQAVNTLRSRSPLPIRTDAATILSRTVDEFFETRLVEHAAAYCDAVRVHLAGRRA
Ga0187778_100064871	3300017961	Tropical Peatland	ELGVDLDVARTGLESFDGVERRFTVRGELVTITGRWRLEPGPAGVRAHLTLDYDVAPPLLTLAVNTLRSRSPLPIRTDADAIIGRAVGEFFETRFAEHAARFCERVRGQLDGNPGA
Ga0190265_137720521	3300018422	Soil	TLAVSRAGKDDRRERRFTVRGPLVTISGRWRLEPGPDGVRVQLTLDYDIAPPLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFTEQAAAYCEQLRARLDAASPRGTRRA
Ga0193724_10728942	3300020062	Soil	SVGRAGRSGRRERRFNLRGALVTVAGRWQLEPGDAAVRVRLTLDYEIAPDLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCEQVRERLSGQPA
Ga0206353_107308102	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	DRQEQTATLIVKRAPAGDHRERRFGLRGPLVSIAGRWELTPDDDGVRVRLTLDYEIAPDLKALAVNTLRSRSPLPIRTDADAIMSRAVDEFFETRFTEQAAAYCSALRERLDARPA
Ga0210407_108080381	3300020579	Soil	PIVDRQEQAATLSVGRAGKAGHRERRFTLRGALVTIAGRWRLEPSDAGVRVRLTLDYEIAPELKTHAVNTLRSRSPLPIRTDADAILSRAVDEFFATRFTEQATAYCEKVRARLDGQPA
Ga0179589_101909152	3300024288	Vadose Zone Soil	RRFTLRGALVTVAGRWQLEPGDAEVRVRLTLDYEIAPDLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCEQVRAHLDGRPA
Ga0209109_104812361	3300025160	Soil	ASLSLANTPGAGTTRGALSHELDLPIVDRQAQTATLTVSRAGKNGRRERRFTMRGELVTIAGRWRLEPGPEGVRVHLTLDYDIAPPLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFTEHAVAYCERLRAQLGARSA
Ga0207680_102095411	3300025903	Switchgrass Rhizosphere	EQTATLIVKRAPAGDHRERRFGLRGPLVSIAGRWELTPDDDGVRVRLTLDYEIAPDLKALAVNTLRSRSPLPIRTDADAIMSRAVDEFFETRFTEQAAAYCSALRERLDARPA
Ga0207660_102474551	3300025917	Corn Rhizosphere	GPLVTISGRWRLEPGPDGVRVQLTLDYDIAPSLKALAVDTLRSRSPLPIRTDADAILSRAVDEFLETRFTEQAAAYCERLREGLQAARRRAARRA
Ga0207662_107546042	3300025918	Switchgrass Rhizosphere	APAGDHRERRFGLRGPLVSIAGRWELTPDDDGVRVRLTLDYEIAPDLKALAVNTLRSRSPLPIRTDADAIMSRAVDEFFETRFTEQAAAYCSALRERLDARPA
Ga0207646_112451121	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	GRSGRRERRFTLRGALVTVAGRWQLEPGDAEVRVRLTLDYEIAPDLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCEQVRAHLDGRPA
Ga0207700_109561181	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	LPIVDRQEQAATLSVGRAGKSGHRERRFTLRGALVTIAGRWQLEPGDAGVRVRLTLDYEIAPELKTHAVNTLRSRSPLPIRTDADAILSRAVDEFFATRFTEQAAAYCEQVRARLDGRPA
Ga0207706_101485033	3300025933	Corn Rhizosphere	LPIVDGQEQTATLTVSRAGKNGRRERCFAMRGPLVTIAGHWRLEPGPDGVRVQLTLEYEVAPPLKTLAVDTLRSRSPLPIRTDADAILSRAVDEFFETRFTEQAAAYCERLRERLEVARPPRTRRA
Ga0207669_113175452	3300025937	Miscanthus Rhizosphere	VLDLPIVDRQEQTATLIVKRAAAGDHRERRFGLRGPLVSIAGRWVLTPDDDGVRVRLTLDYEIAPDLKALAVNTLRSRSPLPIRTDADAIMSRAVDEFFETRFTEQAAAYCSALRERLDARPA
Ga0207651_115971231	3300025960	Switchgrass Rhizosphere	PAGDHRERRFGLRGPLVSIAGRWELTPDDDGVRVRLTLDYEIAPDLKALAVNTLRSRSPLPIRTDADAIMSRAVDEFFETRFTEQAAAYCSALRERLDARPA
Ga0207712_105761451	3300025961	Switchgrass Rhizosphere	NGPRERRFMLRGELVTISGHWRLEPAGAGVRAHLTLHYDIAAPLKTLAVNTLRSRSPLPIRTDADTILSRAVDEFFETRFTEQAVTYCERLRERLEQPRQGQTA
Ga0208285_10215271	3300026005	Rice Paddy Soil	RAGRNGRRERRFTLRGDLVTIAGRWQLEPGDAGVRVRLTLDYEIAPGLKTQAVNTLRSRSPLPIRTDADAIMSRAVDEFFETRFAEQAAAYCEALRARLEARPA
Ga0208532_10074912	3300026011	Rice Paddy Soil	VNGGRRRVGRRERRFTLRGDLVTIAGRWQLEPGDAGVRVRLTLDYEIAPGLKTQAVNTLRSRSPLPIRTDADAIMSRAVDEFFETRFAEQAAAYCEALRARLEARPA
Ga0257166_10038063	3300026358	Soil	RAGRSGRRERRFTLRGALVTVAGRWQLEPGDAEVRVRLTLDYEIAPDLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCEQVRAHLDGRPA
Ga0257147_10133782	3300026475	Soil	LSVERAGRSGRRERRFTLRGALVTVAGRWQLEPGDAEVRVRLTLDYEIAPDLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCEQVRAHLDGRPA
Ga0257155_10131091	3300026481	Soil	VNRQEQTATLSVGRAGRSGRRERRFTLRGALVTVAGRWQLEPGDAAVRVRLTLDYEIAPDLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCEQVRERLSGQPA
Ga0257157_10380102	3300026496	Soil	TLRGALVTVAGRWQLEPGDAAVRVRLTLDYEIAPDLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCEQVRERLSGQPA
Ga0209969_10785771	3300027360	Arabidopsis Thaliana Rhizosphere	GEGGHRERRFTLRGELVTISGRWRLEPTDAGVRVRLTLDYDIAGPLKTLAVNTLRSRSPLPIRTDADEILSRAVDEFFETRFAEQAADYCERLRTRLEGTKAGRPA
Ga0209967_10659742	3300027364	Arabidopsis Thaliana Rhizosphere	SRPSPLEGRGQGEGGHRERRFTLRGELVTISGRWRLEPTDAGVRVRLTLDYDIAGPLKTLAVNTLRSRSPLPIRTDADEILSRAVDEFFETRFAEQAADYCERLRTRLEGTKAGRPA
Ga0209996_10065501	3300027395	Arabidopsis Thaliana Rhizosphere	SPLEGRGQGEGGHRERRFTLRGELVTISGRWRLEPTDAGVRVRLTLDYDIAGPLKTLAVNTLRSRSPLPIRTDADEILSRAVDEFFETRFAEQAADYCERLRTRLEGTKAGRPA
Ga0209329_11337181	3300027605	Forest Soil	PAPGKGGGPLAHALELPIVDRHEQTATLSVGRAGRSGRSERRFTLRGALVTVAGRWQLEPGDAAVRVRLTLDYEIAPDLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAERAAAYCDQVRAHLTGRPA
Ga0209217_11924152	3300027651	Forest Soil	AGRSGRRERRFTLRGALVTVAGRWQLEPGDAAVRVRLTLDYEIAPDLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCEQMRERLSGQPA
Ga0209328_101559332	3300027727	Forest Soil	VNRQEQTATLSVGRAGRSGRRERRFTLRGALVTIAGRWQLVPGDAGVRVRLTLDYEIAPELKTHAVNTLRSRSPLPIRTDADAIMSRAVDEFFETRFTEHAVRFCEG
Ga0209074_100765141	3300027787	Agricultural Soil	VRGGAKAGPLPHVLDLPIVDRQEQVSTLTVSRAGKDDHRERRFRLRGPLVSIAGRWDLTPDDGVVRVRLTLDYEIAPDLKTLAVNTLRSRSPLPIRTDADAIMSRAVDEFFETRFAEHAAAYCAALRERLDARPA
Ga0209180_102899291	3300027846	Vadose Zone Soil	AGRNGRRERRFTLRGELVTVAGRWQLEPGDAAVRVRLTLDYEIAPELKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCERVRAHLDGRPA
Ga0307313_100570242	3300028715	Soil	GNGTAGGALHHELDLPIVDPQEQTTTLTVSRTGKDGRRERRFTMRGPLVTISGRWRLDPGADGVRVQLTLEYDIAPPLKTLAVDTLRSRSPLPIRTDADAILSRAVDEFFETRFTAQAVAFCERLRDRLQAARPRGARRA
Ga0307292_101431321	3300028811	Soil	HHEFDLPIVDPQEQTTTLTVSRAGKDGRRERRFTMRGPLVTISGRWRLDPGADGVRVQLTLEYDIAPPLKTLAVDTLRSRSPLPIRTDADAILSRAVDEFFETRFTAQAVAFCERLRDRLQAARPRGARRA
Ga0307312_100118976	3300028828	Soil	KDGRRERRFTMRGPLVTISGRWRLDPGADGVRVQLTLEYDIAPPLKTLAVDTLRSRSPLPIRTDADAILSRAVDEFFETRFTAQAVAFCERLRDRLQAARPRGTRRA
Ga0307277_101373911	3300028881	Soil	GRRERRFTMRGPLVTISGRWRLDPGADGVRVQLTLEYDIAPPLKTLAVDTLRSRSPLPIRTDADAILSRAVDEFFETRFTAQAVAFCERLRDRLQAARPRGARRA
Ga0310813_105733451	3300031716	Soil	ATLSVGRSGRDGRRERRFTLRGPLVRVAGRWQLEPGDAEVRVRLTLDYEIAPDLKTLALNTLRSRSPLPIRTDADAILSRAVDEFLETRFAEQAAVYCEQVRVHLSGRPA
Ga0307469_113798141	3300031720	Hardwood Forest Soil	AGRNGRRERRFSLRGSLVSVAGRWQLEPADDGVRLHVTLDYEIAPPLKEQAVTTLRSRSPLPIRTDADAILSRAVDEFFQTHLTAQAAAYCDAVRAHLAGRSA
Ga0307468_1000581971	3300031740	Hardwood Forest Soil	LPIVDRQEQTATLTVGRAGKDGRRERRFTMRGPLVTISGRWRFEPGPDGVRVQLTLDYEISPPLKTLAVDTLRSRSPLPIRTDADAILSRAVDEFFETRFTEQAATYCDQLRGRLDAARPRARRA
Ga0318503_103041252	3300031794	Soil	RRERRFSLRGPMASIAGCWTLEPADDGVRLRVTLAYDIVPSLKEQAVTTLRSRSPLPIRTDADAILSRAVDEFFETRLAEHAAAYCDAVRAQVATRSA
Ga0310904_111120681	3300031854	Soil	LEGKGQGEGAHRERRFTLRGELVTISGRWRLESTDAGVRVRLTLDYDIAGPLKTLAVNTLRSRSPLPIRTDADEILSRAVDEFFETRFAEQAADYCERLRARLEGTKAGRPA
Ga0310900_105077531	3300031908	Soil	HHALDLPIVDRQEQTATHTVSRTGKDGRERRFTIRGRLVTISGRWRLEPGPNGVRVQLTLDYDIAPPLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFTEQAAAYCERLRAGLQAAHPHGTRRA
Ga0214473_102876943	3300031949	Soil	RGALSHELDLPIVDRQAQTATLTVSRAGKNGRRERRFTMRGELVTIAGRWRLEPGPEGVRVHLTLDYDIAPPLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFTEHAVAYCERLRAQLGARSA
Ga0307479_100558464	3300031962	Hardwood Forest Soil	ATLTVGRPGKAGRRERRFAVRGELVTIAGRWRLEPSPAGVHVHLTLDYDIAAPLKTLAVNTLRSRSPLPIRTDADAIMSRAVDEFFETRFTEHAVRFCEGVRGGVDGPTSA
Ga0310906_111904702	3300032013	Soil	IRGRLVTISGRWRLEPGPNGVRVQLTLDYDIAPPLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFTEQAAAYCERLRAGLQAAHPHGTRRA
Ga0310890_105610751	3300032075	Soil	TGPLAHVLDLPIVDRQEQTATLIVKRAPAGDHRERRFGLRGPLVSIAGRWELTPDDDGVRVRLTLDYEIAPDLKALAVNTLRSRSPLPIRTDADAIMSRAVDEFFETRFTEQAAAYCSALRERLDARPA
Ga0315283_124632841	3300032164	Sediment	PGKNGRRERRFTLRGELVTITGRWRLEPADEGVRVHLTLDYDIAPPLKTLAVHTLRSRSPLPIRTDADAIMSRAVDEFFETRFTEQAAAYCERLRARVDQPKQGRPG
Ga0307472_1001077151	3300032205	Hardwood Forest Soil	PIVDRQAQTATLTVSRAGKNGRSERRFTMRGPLVTIAGRWRLEPGPEGVRVHLTLDYDIAPPLKALAVNTLRSRSPLPIRTDADAIVSRAVDEFFETRFTEHAVVYCERLRARLGGSSA
Ga0307472_1009699701	3300032205	Hardwood Forest Soil	RSGRRERRFTLRGALVTVAGRWQLEPGDAEVRVRLTLDYEIAPDLKTLAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCEQVRAQLSGRPA
Ga0335069_123716251	3300032893	Soil	GVAPRAGARPGTKLDQALELPIVDRKEQAVSLTVGRAGKNGRRARRFTLRGELVTITGRWWLEPADAGVRVHLTLDYDIAAPLKTLAVNTLRSRSPLPIRTDADAILSRTVDEFFETRFAEQAAAYCELLRARIGPPGRPA
Ga0247829_114888661	3300033550	Soil	VDRQAQTATLTVSRAGKNGRERRFTIRGRLVTIAGCWRLETGPAGVRIHLTLEYDVAPRLKELAVNTLRSRSPLPIRTDADAILSRAVDEFFETRFAEQAAAYCEHLCGHLKAARPGPVTRA
Ga0373950_0023610_2_319	3300034818	Rhizosphere Soil	KRAPAGDHRERRFGLRGPLVSIAGRWELTPDDDGVRVRLTLDYEIAPDLKALAVNTLRSRSPLPIRTDADAIMSRAVDEFFETRFTEQAAAYCSALRERLDARPA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086213

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences