Metagenome / Metatranscriptome Family F086153

Basic Information
Family ID	F086153
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	44 residues
Representative Sequence	PDLQTGAFLHLLDQDKIEGITKNTEGWLENFRELTTVK
Number of Associated Samples	99
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.10 %
% of genes from short scaffolds (< 2000 bps)	91.89 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Most Common Taxonomy
Group	Unclassified (63.063 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater (14.414 % of family members)
Environment Ontology (ENVO)	Unclassified (49.550 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (91.892 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.82% β-sheet: 0.00% Coil/Unstructured: 68.18%
Feature Viewer

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Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF01467	CTP_transf_like	20.72
PF03796	DnaB_C	12.61
PF00772	DnaB	10.81
PF00268	Ribonuc_red_sm	4.50
PF01695	IstB_IS21	2.70
PF13759	2OG-FeII_Oxy_5	1.80
PF13481	AAA_25	0.90
PF00861	Ribosomal_L18p	0.90
PF00583	Acetyltransf_1	0.90
PF02867	Ribonuc_red_lgC	0.90
PF00085	Thioredoxin	0.90
PF02739	5_3_exonuc_N	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	23.42
COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	Replication, recombination and repair [L]	12.61
COG0208	Ribonucleotide reductase beta subunit, ferritin-like domain	Nucleotide transport and metabolism [F]	4.50
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	2.70
COG0209	Ribonucleotide reductase alpha subunit	Nucleotide transport and metabolism [F]	0.90
COG0256	Ribosomal protein L18	Translation, ribosomal structure and biogenesis [J]	0.90
COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	Replication, recombination and repair [L]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.06 %
All Organisms	root	All Organisms	36.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.06 %
cellular organisms	root	All Organisms → cellular organisms	30.63 %
Viruses	superkingdom	All Organisms → Viruses	6.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.06 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	30.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.60 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	2.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.06 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	25.23 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.60 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	2.70 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.06 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	25.23 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.60 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	2.70 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.06 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	25.23 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.60 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.70 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.90 %
Thiotrichales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.06 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	19.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.60 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	2.70 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.70 %
Piscirickettsiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae	0.90 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.06 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	19.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.60 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2.70 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.70 %
Methylophaga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Methylophaga	0.90 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.06 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	19.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.60 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2.70 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.70 %
unclassified Methylophaga	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Methylophaga → unclassified Methylophaga	0.90 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.06 %
Winogradskyella	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella	11.71 %
unclassified Flavobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae	4.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.60 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2.70 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.70 %
Maribacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter	0.90 %
Methylophaga sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Methylophaga → unclassified Methylophaga → Methylophaga sp.	0.90 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.06 %
unclassified Winogradskyella	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella	11.71 %
Flavobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	4.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.60 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2.70 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.70 %
unclassified Maribacter	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter	0.90 %
Methylophaga sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Methylophaga → unclassified Methylophaga → Methylophaga sp.	0.90 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.06 %
Winogradskyella sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	11.71 %
Flavobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	4.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.60 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2.70 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.70 %
Maribacter sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	0.90 %
Methylophaga sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Methylophaga → unclassified Methylophaga → Methylophaga sp.	0.90 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001961\|GOS2240_1002530	All Organisms → cellular organisms → Bacteria	1791	Open in IMG/M
3300001973\|GOS2217_10091456	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1865	Open in IMG/M
3300003409\|JGI26088J50261_1065238	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	631	Open in IMG/M
3300003592\|JGI26246J51724_1055844	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300004097\|Ga0055584_101215518	Not Available	786	Open in IMG/M
3300004097\|Ga0055584_101794765	Not Available	632	Open in IMG/M
3300004097\|Ga0055584_101916780	Not Available	609	Open in IMG/M
3300004273\|Ga0066608_1131781	Not Available	620	Open in IMG/M
3300004280\|Ga0066606_10237162	Not Available	654	Open in IMG/M
3300004457\|Ga0066224_1330667	Not Available	606	Open in IMG/M
3300005424\|Ga0066826_10024483	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2470	Open in IMG/M
3300005942\|Ga0070742_10025892	Not Available	1565	Open in IMG/M
3300006165\|Ga0075443_10322433	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	570	Open in IMG/M
3300006749\|Ga0098042_1099867	Not Available	736	Open in IMG/M
3300006874\|Ga0075475_10173862	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	934	Open in IMG/M
3300006874\|Ga0075475_10391673	Not Available	560	Open in IMG/M
3300007539\|Ga0099849_1199891	Not Available	752	Open in IMG/M
3300007552\|Ga0102818_1022577	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1244	Open in IMG/M
3300007557\|Ga0102821_1165466	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	563	Open in IMG/M
3300008258\|Ga0114840_1028481	Not Available	918	Open in IMG/M
3300008996\|Ga0102831_1151704	Not Available	769	Open in IMG/M
3300009000\|Ga0102960_1275518	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	595	Open in IMG/M
3300009000\|Ga0102960_1304869	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	562	Open in IMG/M
3300009000\|Ga0102960_1358691	Not Available	515	Open in IMG/M
3300009002\|Ga0102810_1050768	Not Available	1332	Open in IMG/M
3300009086\|Ga0102812_10152005	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1266	Open in IMG/M
3300009432\|Ga0115005_10966414	Not Available	689	Open in IMG/M
3300009505\|Ga0115564_10076708	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	1912	Open in IMG/M
3300010148\|Ga0098043_1067726	Not Available	1071	Open in IMG/M
3300010149\|Ga0098049_1029946	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1772	Open in IMG/M
3300010149\|Ga0098049_1232396	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	562	Open in IMG/M
3300012920\|Ga0160423_10624569	Not Available	729	Open in IMG/M
3300012928\|Ga0163110_10131482	Not Available	1712	Open in IMG/M
3300012936\|Ga0163109_11285047	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	533	Open in IMG/M
3300017708\|Ga0181369_1001894	All Organisms → cellular organisms → Bacteria	5904	Open in IMG/M
3300017708\|Ga0181369_1095229	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	622	Open in IMG/M
3300017719\|Ga0181390_1139460	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	618	Open in IMG/M
3300017726\|Ga0181381_1092668	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	642	Open in IMG/M
3300017731\|Ga0181416_1148564	Not Available	565	Open in IMG/M
3300017741\|Ga0181421_1005877	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3483	Open in IMG/M
3300017744\|Ga0181397_1125670	Not Available	665	Open in IMG/M
3300017748\|Ga0181393_1145027	Not Available	594	Open in IMG/M
3300017755\|Ga0181411_1225809	Not Available	520	Open in IMG/M
3300017781\|Ga0181423_1078549	Not Available	1303	Open in IMG/M
3300017967\|Ga0181590_10507580	Not Available	838	Open in IMG/M
3300017969\|Ga0181585_10286879	Not Available	1150	Open in IMG/M
3300018424\|Ga0181591_10142384	Not Available	1927	Open in IMG/M
3300020378\|Ga0211527_10137044	Not Available	702	Open in IMG/M
3300020403\|Ga0211532_10393660	Not Available	519	Open in IMG/M
3300020410\|Ga0211699_10207921	Not Available	748	Open in IMG/M
3300020430\|Ga0211622_10270021	Not Available	728	Open in IMG/M
3300020441\|Ga0211695_10292106	Not Available	597	Open in IMG/M
3300020457\|Ga0211643_10015006	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	4034	Open in IMG/M
3300020595\|Ga0206126_10122606	Not Available	1261	Open in IMG/M
3300021087\|Ga0206683_10491984	Not Available	604	Open in IMG/M
3300021957\|Ga0222717_10182948	Not Available	1254	Open in IMG/M
3300021958\|Ga0222718_10386880	Not Available	702	Open in IMG/M
3300021959\|Ga0222716_10557067	Not Available	634	Open in IMG/M
3300021960\|Ga0222715_10355631	Not Available	814	Open in IMG/M
3300021960\|Ga0222715_10456545	Not Available	686	Open in IMG/M
3300021960\|Ga0222715_10524309	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	625	Open in IMG/M
3300021961\|Ga0222714_10225687	Not Available	1065	Open in IMG/M
3300021961\|Ga0222714_10400688	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	725	Open in IMG/M
3300022074\|Ga0224906_1005263	All Organisms → cellular organisms → Bacteria	5453	Open in IMG/M
3300022198\|Ga0196905_1020147	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2093	Open in IMG/M
3300022926\|Ga0255753_1282268	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	652	Open in IMG/M
3300022927\|Ga0255769_10187673	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	926	Open in IMG/M
(restricted) 3300023109\|Ga0233432_10345603	Not Available	670	Open in IMG/M
3300024230\|Ga0228638_1104322	Not Available	688	Open in IMG/M
3300024231\|Ga0233399_1111776	Not Available	617	Open in IMG/M
3300024267\|Ga0228623_1001907	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6224	Open in IMG/M
3300024267\|Ga0228623_1042281	Not Available	912	Open in IMG/M
3300024294\|Ga0228664_1108566	Not Available	589	Open in IMG/M
3300024316\|Ga0228654_1038750	Not Available	712	Open in IMG/M
3300024346\|Ga0244775_11339529	Not Available	553	Open in IMG/M
3300024413\|Ga0233393_1085588	Not Available	696	Open in IMG/M
3300024428\|Ga0233396_1085682	Not Available	783	Open in IMG/M
3300024571\|Ga0256302_1178098	Not Available	500	Open in IMG/M
3300025084\|Ga0208298_1036105	Not Available	1013	Open in IMG/M
3300025102\|Ga0208666_1109340	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	670	Open in IMG/M
3300025132\|Ga0209232_1085907	Not Available	1082	Open in IMG/M
3300025138\|Ga0209634_1025982	Not Available	3173	Open in IMG/M
3300025658\|Ga0209659_1218807	Not Available	521	Open in IMG/M
3300025701\|Ga0209771_1080945	All Organisms → Viruses → Predicted Viral	1115	Open in IMG/M
3300025763\|Ga0255250_1139747	Not Available	520	Open in IMG/M
3300025767\|Ga0209137_1201487	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	671	Open in IMG/M
3300025840\|Ga0208917_1041202	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1866	Open in IMG/M
3300025879\|Ga0209555_10049442	All Organisms → Viruses → Predicted Viral	1900	Open in IMG/M
3300025880\|Ga0209534_10080932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Methylophaga → unclassified Methylophaga → Methylophaga sp.	1922	Open in IMG/M
3300026183\|Ga0209932_1062468	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	876	Open in IMG/M
3300026200\|Ga0208894_1178439	Not Available	537	Open in IMG/M
3300026443\|Ga0247559_1077272	Not Available	710	Open in IMG/M
3300026460\|Ga0247604_1080642	Not Available	756	Open in IMG/M
3300026500\|Ga0247592_1170752	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	517	Open in IMG/M
3300027198\|Ga0208163_1033970	Not Available	843	Open in IMG/M
3300027229\|Ga0208442_1072635	Not Available	565	Open in IMG/M
3300027234\|Ga0208170_1074626	Not Available	634	Open in IMG/M
3300027255\|Ga0208681_1068531	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	617	Open in IMG/M
3300027413\|Ga0208950_1039127	Not Available	1226	Open in IMG/M
3300027413\|Ga0208950_1083620	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	699	Open in IMG/M
3300027418\|Ga0208022_1063270	Not Available	798	Open in IMG/M
3300027714\|Ga0209815_1171672	Not Available	681	Open in IMG/M
3300027753\|Ga0208305_10018357	All Organisms → Viruses → Predicted Viral	2850	Open in IMG/M
3300027757\|Ga0208671_10088812	Not Available	1137	Open in IMG/M
3300028008\|Ga0228674_1097243	All Organisms → Viruses → Predicted Viral	1031	Open in IMG/M
(restricted) 3300028045\|Ga0233414_10210887	Not Available	874	Open in IMG/M
3300028099\|Ga0247576_1013583	Not Available	1655	Open in IMG/M
3300028110\|Ga0247584_1106499	Not Available	702	Open in IMG/M
3300028189\|Ga0257127_1046079	Not Available	1470	Open in IMG/M
3300028233\|Ga0256417_1154955	Not Available	616	Open in IMG/M
3300028280\|Ga0228646_1156496	Not Available	547	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	93.69%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	3.60%
Freshwater	Environmental → Aquatic → Freshwater	2.70%

Habitat	Taxonomy	Distribution
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	24.32%
Coastal	Environmental → Aquatic → Marine → Coastal	19.82%
Unclassified	Environmental → Aquatic → Marine → Unclassified	18.02%
Oceanic	Environmental → Aquatic → Marine → Oceanic	15.32%
Strait	Environmental → Aquatic → Marine → Strait	8.11%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	3.60%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	3.60%
Inlet	Environmental → Aquatic → Marine → Inlet	2.70%
River	Environmental → Aquatic → Freshwater → River	1.80%
Pelagic	Environmental → Aquatic → Marine → Pelagic	1.80%
Lake	Environmental → Aquatic → Freshwater → Lake	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	19.82%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	18.02%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	12.61%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	10.81%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	9.01%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	8.11%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	4.50%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	3.60%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	3.60%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	2.70%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	2.70%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	14.41%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	12.61%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	10.81%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	9.01%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	8.11%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	8.11%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	7.21%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	4.50%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	4.50%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	3.60%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	3.60%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	2.70%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	1.80%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	1.80%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	1.80%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	0.90%
Marine	Environmental → Aquatic → Marine → Inlet → Unclassified → Marine	0.90%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.90%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	0.90%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	0.90%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001961	Marine microbial communities from Dirty Rock, Cocos Island, Costa Rica - GS025	Environmental	Open in IMG/M
3300001973	Marine microbial communities from Bermuda, Atlantic Ocean - GS001	Environmental	Open in IMG/M
3300003409	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA	Environmental	Open in IMG/M
3300003592	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_10m_DNA	Environmental	Open in IMG/M
3300004097	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG	Environmental	Open in IMG/M
3300004273	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_135m	Environmental	Open in IMG/M
3300004280	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_100m	Environmental	Open in IMG/M
3300004457	Marine viral communities from Newfoundland, Canada MC-1	Environmental	Open in IMG/M
3300005424	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV49	Environmental	Open in IMG/M
3300005942	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757	Environmental	Open in IMG/M
3300006165	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA	Environmental	Open in IMG/M
3300006749	Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG	Environmental	Open in IMG/M
3300006874	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA	Environmental	Open in IMG/M
3300007539	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG	Environmental	Open in IMG/M
3300007552	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.571	Environmental	Open in IMG/M
3300007557	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.715	Environmental	Open in IMG/M
3300008258	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-3-NA	Environmental	Open in IMG/M
3300008996	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747	Environmental	Open in IMG/M
3300009000	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG	Environmental	Open in IMG/M
3300009002	Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573	Environmental	Open in IMG/M
3300009086	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713	Environmental	Open in IMG/M
3300009432	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome	Environmental	Open in IMG/M
3300009505	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523	Environmental	Open in IMG/M
3300010148	Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG	Environmental	Open in IMG/M
3300010149	Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG	Environmental	Open in IMG/M
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental	Open in IMG/M
3300012928	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG	Environmental	Open in IMG/M
3300012936	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG	Environmental	Open in IMG/M
3300017708	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG	Environmental	Open in IMG/M
3300017719	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21	Environmental	Open in IMG/M
3300017726	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24	Environmental	Open in IMG/M
3300017731	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 39 SPOT_SRF_2013-01-16	Environmental	Open in IMG/M
3300017741	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 44 SPOT_SRF_2013-06-19	Environmental	Open in IMG/M
3300017744	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23	Environmental	Open in IMG/M
3300017748	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21	Environmental	Open in IMG/M
3300017755	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09	Environmental	Open in IMG/M
3300017781	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14	Environmental	Open in IMG/M
3300017967	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017969	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018424	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300020378	Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)	Environmental	Open in IMG/M
3300020403	Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)	Environmental	Open in IMG/M
3300020410	Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)	Environmental	Open in IMG/M
3300020430	Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)	Environmental	Open in IMG/M
3300020441	Marine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524 (ERX556088-ERR599006)	Environmental	Open in IMG/M
3300020457	Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014)	Environmental	Open in IMG/M
3300020595	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160412_1	Environmental	Open in IMG/M
3300021087	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015	Environmental	Open in IMG/M
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental	Open in IMG/M
3300021960	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D	Environmental	Open in IMG/M
3300021961	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D	Environmental	Open in IMG/M
3300022074	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)	Environmental	Open in IMG/M
3300022198	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)	Environmental	Open in IMG/M
3300022926	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG	Environmental	Open in IMG/M
3300022927	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG	Environmental	Open in IMG/M
3300023109 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG	Environmental	Open in IMG/M
3300024230	Seawater microbial communities from Monterey Bay, California, United States - 48D	Environmental	Open in IMG/M
3300024231	Seawater microbial communities from Monterey Bay, California, United States - 43D	Environmental	Open in IMG/M
3300024267	Seawater microbial communities from Monterey Bay, California, United States - 28D	Environmental	Open in IMG/M
3300024294	Seawater microbial communities from Monterey Bay, California, United States - 78D	Environmental	Open in IMG/M
3300024316	Seawater microbial communities from Monterey Bay, California, United States - 66D	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300024413	Seawater microbial communities from Monterey Bay, California, United States - 21D	Environmental	Open in IMG/M
3300024428	Seawater microbial communities from Monterey Bay, California, United States - 32D	Environmental	Open in IMG/M
3300024571	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepA_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025084	Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)	Environmental	Open in IMG/M
3300025102	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)	Environmental	Open in IMG/M
3300025132	Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)	Environmental	Open in IMG/M
3300025138	Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)	Environmental	Open in IMG/M
3300025658	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_10m_DNA (SPAdes)	Environmental	Open in IMG/M
3300025701	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA (SPAdes)	Environmental	Open in IMG/M
3300025763	Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepA_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025767	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA (SPAdes)	Environmental	Open in IMG/M
3300025840	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025879	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_85LU_5_DNA (SPAdes)	Environmental	Open in IMG/M
3300025880	Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)	Environmental	Open in IMG/M
3300026183	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG (SPAdes)	Environmental	Open in IMG/M
3300026200	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV49 (SPAdes)	Environmental	Open in IMG/M
3300026443	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 4R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300026460	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 85R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300026500	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 54R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300027198	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753 (SPAdes)	Environmental	Open in IMG/M
3300027229	Estuarine microbial communities from the Columbia River estuary - metaG 1549B-3 (SPAdes)	Environmental	Open in IMG/M
3300027234	Estuarine microbial communities from the Columbia River estuary - metaG 1550A-02 (SPAdes)	Environmental	Open in IMG/M
3300027255	Estuarine microbial communities from the Columbia River estuary - metaG 1558A-02 (SPAdes)	Environmental	Open in IMG/M
3300027413	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_54_BLW_10 (SPAdes)	Environmental	Open in IMG/M
3300027418	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747 (SPAdes)	Environmental	Open in IMG/M
3300027714	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes)	Environmental	Open in IMG/M
3300027753	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 (SPAdes)	Environmental	Open in IMG/M
3300027757	Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 (SPAdes)	Environmental	Open in IMG/M
3300028008	Seawater microbial communities from Monterey Bay, California, United States - 1D_r	Environmental	Open in IMG/M
3300028045 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MG	Environmental	Open in IMG/M
3300028099	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 33R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300028110	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 43R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300028189	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_135m	Environmental	Open in IMG/M
3300028233	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - MB_1026D (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300028280	Seawater microbial communities from Monterey Bay, California, United States - 58D	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086153

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GOS2240_10025304	3300001961	Marine	LQTGAFLHLLDQDKIEGITKNTDTWLENFRGLTTVS*
GOS2217_100914564	3300001973	Marine	PDPSGAFLHLLDNDKIEGITKNTEGWLETFRKLTVYKR*
JGI26088J50261_10652383	3300003409	Marine	KQYVNDVLKQPAPDLQAGAFLRLLEQDKIEGITKNTEGWLETFRDLTKV*
JGI26246J51724_10558441	3300003592	Marine	DVIKSVVPDLQVGAFLHCLDTDKIEGITKNTEAWLENFRPLTTVK*
Ga0055584_1012155181	3300004097	Pelagic Marine	PDLQAGAFLHLLDNDKIEGVTKNTEGWLENFRGLTVFKK*
Ga0055584_1017947651	3300004097	Pelagic Marine	KSTILDIVKEDIPDLQAGAFLHLLDNDKIEGVTKNTEGWLENFRGLTVFKK*
Ga0055584_1019167801	3300004097	Pelagic Marine	IVKEDIPDLQAGAFLHLLENDKIEGITKNTEGWLENFRGLTVFKK*
Ga0066608_11317812	3300004273	Marine	KQKDHILDIIKSEIPDLQSGAFLHLLDQDKIEGITKNTEAWLEVFRSLTVFTK*
Ga0066606_102371622	3300004280	Marine	IPDLQSGAFLHLLDQDKIEGITKNTEAWLEVFRSLTVFTK*
Ga0066224_13306672	3300004457	Marine	KDHILDIIKSDIPSLQSGAFLHLLDQDKIEGITKNTEGWLENFRGLTVLKK*
Ga0066826_100244831	3300005424	Marine	ILDIIKSGVPDLQAGAFLHLLDTDRIEGVTKNTEGWLENFRGLTVFKK*
Ga0070742_100258921	3300005942	Estuarine	DLQTGAFLHLLDQDKIEGITKNTEGWLDNFKGLRFVK*
Ga0075443_103224332	3300006165	Marine	VHILDTMKSKIPTLQTGAFLHMLETDGIEGITKNTETWLENFRGLTTVIGNENR*
Ga0098042_10998672	3300006749	Marine	ILEIIKSDIPDLQAGAFLHLLDSDKIEGITKNTEGWLENFRGLTVFKK*
Ga0075475_101738621	3300006874	Aqueous	PDLQTGAFLHLLDQDKIEGITKNTEGWLENFRELTTVK*
Ga0075475_103916732	3300006874	Aqueous	LPDLQTGAFLHMLDQDKVEGITKNTEGWLENFRSLTTVIK*
Ga0099849_11998911	3300007539	Aqueous	KNTILNTITSPVPDLQSGAFLHLLDQDKIEGITKNTPGWLENFRALTTVIT*
Ga0102818_10225774	3300007552	Estuarine	QTGAFLHSLDQDKIEGITKNTEGWLENFRRLTTVS*
Ga0102821_11654663	3300007557	Estuarine	DLQTGAFLHSLDQDKIEGITKNTEGWLENFSRLTTVS*
Ga0114840_10284811	3300008258	Freshwater, Plankton	TLNVLKEAVPPLQTGAFLHLLDIDKIEGITKNTEGWLENFRTLTVFKQ*
Ga0102831_11517041	3300008996	Estuarine	TGAFLHLLDIDKIEGITKNTEGWLENFRTLTVFKQ*
Ga0102960_12755181	3300009000	Pond Water	TGAFLHLLDHDKIEGVTKNTEGWLENFRGLTTVQ*
Ga0102960_13048691	3300009000	Pond Water	DSVIKLPVPDLQTGTFLHYLDSDKIEGVTKNTEGWLENFRGLTTVS*
Ga0102960_13586912	3300009000	Pond Water	LQTGAFLHHLDQDKIEGVTKNTEGWLENFRGLTTVK*
Ga0102810_10507683	3300009002	Estuarine	DLQAGAFLHLLDNDKIEGVTKNTEGWLENFRGLTVFKK*
Ga0102812_101520054	3300009086	Estuarine	LQTGAFLHSLDQDKIEGITKNTEGWLENFRRLTTVS*
Ga0115005_109664142	3300009432	Marine	IIRGNVPDLQTGAFLHLLEQDQIEGITKNTEGWLENFRSLTVLK*
Ga0115564_100767083	3300009505	Pelagic Marine	KEEVRGLETGAFLHMLQHDKIEGITKNTESWLENFRGLTVIKK*
Ga0098043_10677262	3300010148	Marine	PDLQSGAFLHLLDQDKIEGITKNTEGWLQNFRGLTVFKK*
Ga0098049_10299461	3300010149	Marine	VINSPVPDLQTGAFLRLLEKDKIEGITKNTESWLENYRGLTTVK*
Ga0098049_12323963	3300010149	Marine	ILKADIPDLQTGVFLSLLDQDKIEGVTKNTEGWLENFRHLTTVS*
Ga0160423_106245691	3300012920	Surface Seawater	IIKSPVPDLQTGAFLRLLDQDKIEGVTKNTEGWLENFRGLTTVIK*
Ga0163110_101314821	3300012928	Surface Seawater	IKVVEDIFKSEIPDLQTGVFLSLLDQDKIEGVTKNTEGWLENFRGLTTVS*
Ga0163109_112850472	3300012936	Surface Seawater	IFKSDIPNLQTGVFLSLLDQDKIEGITKNTEGWLENFRGLTTVK*
Ga0181369_10018941	3300017708	Marine	TGAFLHLLDQDKIEGVTKNTEGWLENFRGLTVFKK
Ga0181369_10952291	3300017708	Marine	ELQTGVFLSLLDQDKIEGITKNTEGWLENFRGLTTVK
Ga0181390_11394601	3300017719	Seawater	DVFKQTIPDLQTGAFLHLMDQDKIEGITKNTEGWLENFRSLTTVK
Ga0181381_10926681	3300017726	Seawater	IFKSNIPKLQTGVFLSLLDQDKIEGITKNTEGWLENFRGLTTVK
Ga0181416_11485642	3300017731	Seawater	DTEKSTILNIVKEDIPDLQAGAFLHLLDNDKIEGVTKNTEGWLENFRGLTVFKK
Ga0181421_10058771	3300017741	Seawater	KQYVNSIISSIIPELQSGAFLHLLDQDKIEGITKNTEAWLENFRGLTKVK
Ga0181397_11256703	3300017744	Seawater	ITDLQTGAFLHLLDQDKIEGVTKNTEGWLDNFKGLRTVS
Ga0181393_11450271	3300017748	Seawater	TILDIIKSPIPDLQTGAFLRLLDQDKIEGVTKNTEGWLENFRGLTTVIK
Ga0181411_12258092	3300017755	Seawater	VEEILKSPIPDLQTGAFLHHLDQDKIEGVTKNTEGWLENFRGLTTVK
Ga0181423_10785494	3300017781	Seawater	KLQTGVFLSLLDQDKIEGITKNTEGWLENFRGLTTVK
Ga0181590_105075801	3300017967	Salt Marsh	PDLQTGAFLHHMDQDKIEGITKNTEGWLENFRGLTTVK
Ga0181585_102868791	3300017969	Salt Marsh	PAPRLQTGTFLHYLDNDKIEGITKNTEAWLETFRALTGFRAREL
Ga0181591_101423844	3300018424	Salt Marsh	DLQIGAFLHLLDQDKIEGITKNTEGWLENFRGLTTVS
Ga0211527_101370441	3300020378	Marine	ILDIIKSDIPDLQTGAFLHLLDQDKIEGITKNTEGWLENFRGLTVFKK
Ga0211532_103936602	3300020403	Marine	ILDIIKSPIPSLETGAFLHLLDQDKIEGITKNTEAWLETFRGLTVFKK
Ga0211699_102079211	3300020410	Marine	KGPIPDLQSGAFLHLLDNDKIEGITKNTEGWLETFRKLTVYKR
Ga0211622_102700212	3300020430	Marine	KNHIFDTIKDNVPNLQVGAFLHLLDIDKIEGITKNTEGWLQNFRGLTVFK
Ga0211695_102921061	3300020441	Marine	KNHIFDTIKDKVPSLQSGAFLHLLDTDRIEGITKNTEGWLENFRGLTVIK
Ga0211643_100150064	3300020457	Marine	DNVPNLRVGSFLRLLDIDKIEGITKNTEGWLQNFRGLTVFK
Ga0206126_101226061	3300020595	Seawater	EKSTILDIVKEDIPDLQAGAFLHLLDNDKIEGVTKNTEGWLENFRGLTVFKK
Ga0206683_104919842	3300021087	Seawater	PVNDLQTGAFLRMLELDGIEGITKNTEGWLENFRGLTTYKKSK
Ga0222717_101829484	3300021957	Estuarine Water	YVESIMKENIPGLQTGAFLHLMDQDKIEGITKNTEGWLETFRALTTVK
Ga0222718_103868802	3300021958	Estuarine Water	DIVKEDIPDLQAGAFLHLLDNDKIEGVTKNTEGWLENFRGLTVFKK
Ga0222716_105570671	3300021959	Estuarine Water	QSGAFLHLMDQDKIEGVTKNTEGWLENFRGLTVFKR
Ga0222715_103556312	3300021960	Estuarine Water	SGAFLHLLDQDKIEGITKNTEGWLENFRGLTVLKK
Ga0222715_104565452	3300021960	Estuarine Water	SPVNNLQTGAFLRMLELDGIEGITKNTEAWLENFRGLTTYKKK
Ga0222715_105243091	3300021960	Estuarine Water	QSGAFLHLLDQDKIEGITKNTEGWLENFRGLTTVL
Ga0222714_102256874	3300021961	Estuarine Water	PIPDLQTGAFLHLLDLDKIEGVTKNTEGWLENFRPLTTVR
Ga0222714_104006883	3300021961	Estuarine Water	VPNLQTGAFLHMLDQDKIEGITKNTEAWLENYRSLTTVQ
Ga0224906_10052631	3300022074	Seawater	SILEVIKSPIPNLQTGAFLHLLDQDKIEGVTKNTEGWLDNFKGLTTVTI
Ga0196905_10201471	3300022198	Aqueous	SEIPDLQTGAFLHLLDQDKIEGITKNTEGWLENFRGLKVIKK
Ga0255753_12822683	3300022926	Salt Marsh	KAPVPDLQTGAFLHLMDQDKIEGITKNTEGWLENFRGLTTVQ
Ga0255769_101876731	3300022927	Salt Marsh	QTGAFLHLLDSDKIEGITKNTEGWLENFRTLTVVK
(restricted) Ga0233432_103456031	3300023109	Seawater	QTGAFLRQLEQDKIEGITKNTEGWLENFRGLTAVSN
Ga0228638_11043221	3300024230	Seawater	EDIPDLQAGAFLHLLDNDKIEGVTKNTEGWLENFRGLTVFKK
Ga0233399_11117762	3300024231	Seawater	SDIPNLQSGAFLHLLDQDKIEGITKNTEGWLENFRGLTVLKK
Ga0228623_100190711	3300024267	Seawater	IKEKDHILNIIKSDIPNLQSGAFLHLLDQDKIEGITKNTEGWLENFRGLTVIKK
Ga0228623_10422811	3300024267	Seawater	LRASLPDLQTGAFLRQLEQDKIEGITKNTEGWLENFRGLTAVSN
Ga0228664_11085661	3300024294	Seawater	QTGAFLHLLDQDKIEGITKNTEGWLENFRGLTVFKK
Ga0228654_10387502	3300024316	Seawater	MEVLKSPINDLQTGAFLHLLDQDKIEGVTKNTEGWLDNFKGLRHKK
Ga0244775_113395292	3300024346	Estuarine	ILDIIKSDIPNLQSGAFLHLLDQDKIEGITKNTEGWLENFRGLTVLKK
Ga0233393_10855882	3300024413	Seawater	VIKTPVNDLQTGAFLRMLELDGIEGITKNTEAWLENFRGLTTYKKK
Ga0233396_10856823	3300024428	Seawater	KNTILDIVKEDIPDLQAGAFLHLLDNDKIEGVTKNTEGWLENFRGLTVFKK
Ga0256302_11780981	3300024571	Freshwater	TGAFLHLLGIDKIEGITKNTEGWLENFRTLTVFKQ
Ga0208298_10361051	3300025084	Marine	KNHILNIIKSDIPNLQSGAFLHLLDQDKIEGITKNTEGWLENFRGLTVIKK
Ga0208666_11093403	3300025102	Marine	TPDLQAGAFLRLLEQDKIEGITKNTEGWLETFRDLTKV
Ga0209232_10859072	3300025132	Marine	NSEKNTILEIIKKDIPDLQSGAFLHLLDSDKIEGITKNTEGWLENFRGLTVFKK
Ga0209634_10259821	3300025138	Marine	ILNIIKSDIPNLQSGAFLHLLDQDKIEGITKNTEGWLENFRGLTVLKK
Ga0209659_12188071	3300025658	Marine	MDVLRASLPDLQTGAFLRQLEQDKIEGITKNTEGWLENFRGLTAVSN
Ga0209771_10809453	3300025701	Marine	KSPVPDLQTGAFLRLLEKDKIEGITKNTEGWLENFRGLTVRS
Ga0255250_11397471	3300025763	Freshwater	PIPPLQTGAFLHLLDVDKIEGITKNTEGWLENFRTLTVFK
Ga0209137_12014873	3300025767	Marine	LKSEMPKLQTGGFLHLLEIDKIEGITKNTEGWLENFRRLTTVR
Ga0208917_10412021	3300025840	Aqueous	LQTGAFLHLLDQDKIEGITKNTEGWLENFRELTTVK
Ga0209555_100494425	3300025879	Marine	LKQPAPDLQAGAFLRLLEQDKIEGITKNTEGWLETFRDLTKV
Ga0209534_100809323	3300025880	Pelagic Marine	DTVKQDIPDLQTGAFMHLLDQDKIEGITKNTEGWLENFRGLTSFKK
Ga0209932_10624681	3300026183	Pond Water	QYVEEVIKQPIPTLQTGAFLHLLDQDKIEGVTKNTEGWLENFRDLTTVK
Ga0208894_11784391	3300026200	Marine	ILDIIKSGVPDLQAGAFLHLLDTDRIEGVTKNTEGWLENFRGLTVFKK
Ga0247559_10772721	3300026443	Seawater	KDHILNIIKSDIPNLQSGAFLHLLDQDKIEGITKNTEGWLENFRGLTVIKK
Ga0247604_10806421	3300026460	Seawater	PNLQSGAFLHLLDQDKIEGITKNTEGWLENFRGLTVIKK
Ga0247592_11707521	3300026500	Seawater	MIKKKNHILDIIKSDIPNLQTGAFLHLLDQDKIEGITKNTEGWLENFRGLT
Ga0208163_10339701	3300027198	Estuarine	KEEVNKLQTGAFLHLLDEDKIEGITKNTEGWLENFRRLTVVK
Ga0208442_10726351	3300027229	Estuarine	PPLQTGAFLHLLDIDKIEGITKNTEGWLENFRTLTVFKQ
Ga0208170_10746261	3300027234	Estuarine	LRASLPDLQTGAFLRQLEQDKIEGITKNTEGWLENFRTLTVFKQ
Ga0208681_10685311	3300027255	Estuarine	ILHTLNVLKEPIPPLQTGAFLHLLDIDKIEGITKNTEGWLENFRTLTVFKQ
Ga0208950_10391272	3300027413	Marine	KEEIPNLQTGAFLHLLDQDKIEGITRNTEGWLENFRGLTGYKK
Ga0208950_10836203	3300027413	Marine	EVINSPVPDLQTGAFLRLLEKDKIEGITKNTESWLENYRGLTTVK
Ga0208022_10632701	3300027418	Estuarine	LKEAVPPLQTGAFLHLLDIDKIEGITKNTEGWLENFRTLTVFKQ
Ga0209815_11716721	3300027714	Marine	HILDVMKASIPDLQAGAFLHLLDTDKIEGITKNTEGWLENFRKLTVYKK
Ga0208305_100183571	3300027753	Estuarine	DNNEKNTILDIVKEDIPDLQAGAFLHLLDNDKIEGVTKNTEGWLENFRGLTVFKK
Ga0208671_100888121	3300027757	Estuarine	VLRASLPDLQTGAFLRQLEQDKIEGITKNTEGWLENFRGLTAVSN
Ga0228674_10972433	3300028008	Seawater	ILDIVKEDIPDLQAGAFLHLLDNDKIEGVTKNTEGWLENFRGLTVFKK
(restricted) Ga0233414_102108872	3300028045	Seawater	QVGAFLRFLDQDQINGITKNTEGWLETFRPLTVFNKE
Ga0247576_10135831	3300028099	Seawater	IKSDIPNLQSGAFLHLLDQDKIEGITKNTEGWLENFRGLTVLKK
Ga0247584_11064992	3300028110	Seawater	PNLQSGAFLHLLDQDKIEGITKNTEGWLENFRGLTVLKK
Ga0257127_10460792	3300028189	Marine	DKKQKDHILDIIKSEIPDLQSGAFLHLLDQDKIEGITKNTEAWLEVFRSLTVFTK
Ga0256417_11549551	3300028233	Seawater	IPNLQSGAFLHLLDQDKIEGLTKNTEGWLENFRGLTVIKQ
Ga0228646_11564962	3300028280	Seawater	DVIKTPVNDLQTGAFLRMLELDGIEGITKNTEAWLENFRGLTTYKKK

Hidden Markov Model


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