NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F086150

Metagenome Family F086150

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F086150
Family Type Metagenome
Number of Sequences 111
Average Sequence Length 70 residues
Representative Sequence MYNPFAKKENKKASLDEKKTSQDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQREWG
Number of Associated Samples 71
Number of Associated Scaffolds 111

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 51.35 %
% of genes near scaffold ends (potentially truncated) 36.04 %
% of genes from short scaffolds (< 2000 bps) 80.18 %
Associated GOLD sequencing projects 63
AlphaFold2 3D model prediction Yes
3D model pTM-score0.21

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (92.793 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(43.243 % of family members)
Environment Ontology (ENVO) Unclassified
(86.486 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(83.784 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 4.12%    β-sheet: 9.28%    Coil/Unstructured: 86.60%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.21
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 111 Family Scaffolds
PF14464Prok-JAB 16.22
PF14311DUF4379 7.21
PF12770CHAT 1.80
PF09603Fib_succ_major 0.90
PF01555N6_N4_Mtase 0.90
PF13175AAA_15 0.90
PF00075RNase_H 0.90
PF00158Sigma54_activat 0.90
PF04851ResIII 0.90
PF00078RVT_1 0.90
PF12728HTH_17 0.90
PF02195ParBc 0.90
PF00589Phage_integrase 0.90
PF05128DUF697 0.90
PF00899ThiF 0.90

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 111 Family Scaffolds
COG0863DNA modification methylaseReplication, recombination and repair [L] 0.90
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 0.90
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 0.90
COG3768Uncharacterized membrane protein YcjF, UPF0283 familyFunction unknown [S] 0.90


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A92.79 %
All OrganismsrootAll Organisms7.21 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2166559018|JCVI_READ_1129096Not Available963Open in IMG/M
3300000154|SI47jul10_150mDRAFT_c1025498Not Available1170Open in IMG/M
3300000167|SI39nov09_120mDRAFT_c1034501Not Available1164Open in IMG/M
3300001971|GOS2215_10033697Not Available935Open in IMG/M
3300003494|JGI26240J51127_1005840Not Available3213Open in IMG/M
3300003495|JGI26244J51143_1030869Not Available1027Open in IMG/M
3300003702|PicMicro_10016110Not Available6485Open in IMG/M
3300004109|Ga0008650_1196882Not Available519Open in IMG/M
3300005398|Ga0066858_10007563Not Available3318Open in IMG/M
3300005398|Ga0066858_10010978All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → Halorubrum californiense2736Open in IMG/M
3300005398|Ga0066858_10023986Not Available1820Open in IMG/M
3300005400|Ga0066867_10186477Not Available763Open in IMG/M
3300005400|Ga0066867_10252456Not Available638Open in IMG/M
3300005400|Ga0066867_10358457Not Available518Open in IMG/M
3300005402|Ga0066855_10253042Not Available577Open in IMG/M
3300005402|Ga0066855_10274802Not Available553Open in IMG/M
3300005408|Ga0066848_10028747Not Available1565Open in IMG/M
3300005422|Ga0066829_10027227Not Available1811Open in IMG/M
3300005422|Ga0066829_10113588Not Available811Open in IMG/M
3300005422|Ga0066829_10196576Not Available594Open in IMG/M
3300005423|Ga0066828_10282611Not Available535Open in IMG/M
3300005423|Ga0066828_10314450Not Available502Open in IMG/M
3300005425|Ga0066859_10111815Not Available818Open in IMG/M
3300005425|Ga0066859_10169046Not Available648Open in IMG/M
3300005426|Ga0066847_10014012Not Available2618Open in IMG/M
3300005427|Ga0066851_10228136Not Available582Open in IMG/M
3300005428|Ga0066863_10118030Not Available962Open in IMG/M
3300005429|Ga0066846_10299343Not Available523Open in IMG/M
3300005430|Ga0066849_10319593Not Available591Open in IMG/M
3300005603|Ga0066853_10194273Not Available677Open in IMG/M
3300005603|Ga0066853_10197952Not Available670Open in IMG/M
3300005605|Ga0066850_10203918Not Available715Open in IMG/M
3300005837|Ga0078893_11069541All Organisms → cellular organisms → Bacteria4396Open in IMG/M
3300006013|Ga0066382_10240325Not Available624Open in IMG/M
3300006166|Ga0066836_10201256Not Available1182Open in IMG/M
3300006166|Ga0066836_10352581Not Available884Open in IMG/M
3300006166|Ga0066836_10964883Not Available514Open in IMG/M
3300006902|Ga0066372_10500219Not Available714Open in IMG/M
3300007504|Ga0104999_1009716Not Available7305Open in IMG/M
3300007504|Ga0104999_1135701Not Available896Open in IMG/M
3300007512|Ga0105016_1174489Not Available1100Open in IMG/M
3300007514|Ga0105020_1004348Not Available16534Open in IMG/M
3300007514|Ga0105020_1091694Not Available2366Open in IMG/M
3300007755|Ga0105014_1117799Not Available631Open in IMG/M
3300009104|Ga0117902_1188402Not Available2065Open in IMG/M
3300009104|Ga0117902_1454994Not Available1108Open in IMG/M
3300009104|Ga0117902_1781151Not Available641Open in IMG/M
3300009126|Ga0118723_1207147Not Available1072Open in IMG/M
3300009173|Ga0114996_10027011Not Available5573Open in IMG/M
3300009173|Ga0114996_10312523Not Available1226Open in IMG/M
3300009376|Ga0118722_1082881All Organisms → cellular organisms → Bacteria2297Open in IMG/M
3300009409|Ga0114993_11072046Not Available571Open in IMG/M
3300010883|Ga0133547_11872264All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → unclassified Gimesia → Gimesia sp.1105Open in IMG/M
3300012920|Ga0160423_10795024Not Available636Open in IMG/M
3300020262|Ga0211537_1055826Not Available714Open in IMG/M
3300020328|Ga0211567_1033959Not Available1161Open in IMG/M
3300020344|Ga0211570_1073322Not Available788Open in IMG/M
3300020361|Ga0211531_1204995Not Available511Open in IMG/M
3300020373|Ga0211660_10034882Not Available2309Open in IMG/M
3300020423|Ga0211525_10232730Not Available771Open in IMG/M
3300020423|Ga0211525_10381762Not Available576Open in IMG/M
3300020423|Ga0211525_10466868Not Available509Open in IMG/M
3300020435|Ga0211639_10356642Not Available603Open in IMG/M
3300020444|Ga0211578_10152664Not Available914Open in IMG/M
3300020470|Ga0211543_10306851Not Available770Open in IMG/M
3300020476|Ga0211715_10280141Not Available815Open in IMG/M
3300022225|Ga0187833_10006453All Organisms → cellular organisms → Bacteria10828Open in IMG/M
3300022225|Ga0187833_10012679All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → Winogradskyella vidalii7039Open in IMG/M
3300022225|Ga0187833_10019241Not Available5375Open in IMG/M
3300022225|Ga0187833_10051429Not Available2859Open in IMG/M
3300022225|Ga0187833_10058132Not Available2640Open in IMG/M
3300022225|Ga0187833_10130968Not Available1557Open in IMG/M
3300022225|Ga0187833_10172206Not Available1298Open in IMG/M
3300022225|Ga0187833_10189471Not Available1218Open in IMG/M
3300022225|Ga0187833_10206946Not Available1148Open in IMG/M
3300022225|Ga0187833_10209339Not Available1139Open in IMG/M
3300022225|Ga0187833_10256828Not Available992Open in IMG/M
3300022225|Ga0187833_10468643Not Available654Open in IMG/M
3300022225|Ga0187833_10494090Not Available630Open in IMG/M
3300022227|Ga0187827_10205484Not Available1334Open in IMG/M
3300022227|Ga0187827_10353509Not Available928Open in IMG/M
3300022227|Ga0187827_10773331Not Available535Open in IMG/M
(restricted) 3300024252|Ga0233435_1045147Not Available1762Open in IMG/M
3300026192|Ga0207986_1014927Not Available2246Open in IMG/M
3300026199|Ga0208638_1164841Not Available587Open in IMG/M
3300026206|Ga0207988_1032123Not Available1379Open in IMG/M
3300026209|Ga0207989_1088514Not Available787Open in IMG/M
3300026210|Ga0208642_1023630Not Available1637Open in IMG/M
3300026211|Ga0208132_1088471Not Available713Open in IMG/M
3300026211|Ga0208132_1137045Not Available534Open in IMG/M
3300026257|Ga0208407_1080032Not Available1055Open in IMG/M
3300026279|Ga0208411_1190366Not Available519Open in IMG/M
3300026321|Ga0208764_10175695Not Available1071Open in IMG/M
3300027630|Ga0209432_1142595Not Available692Open in IMG/M
3300027838|Ga0209089_10268734Not Available981Open in IMG/M
3300027844|Ga0209501_10734364Not Available527Open in IMG/M
3300027847|Ga0209402_10791742Not Available507Open in IMG/M
3300028198|Ga0257121_1085594Not Available1180Open in IMG/M
3300028706|Ga0257115_1130766Not Available619Open in IMG/M
3300031766|Ga0315322_10158120Not Available1609Open in IMG/M
3300031861|Ga0315319_10678497Not Available506Open in IMG/M
3300032138|Ga0315338_1001205Not Available35869Open in IMG/M
3300032138|Ga0315338_1001735All Organisms → cellular organisms → Bacteria25130Open in IMG/M
3300032138|Ga0315338_1002711Not Available16812Open in IMG/M
3300032278|Ga0310345_11019537Not Available809Open in IMG/M
3300032278|Ga0310345_12297246Not Available522Open in IMG/M
3300032360|Ga0315334_10456137Not Available1090Open in IMG/M
3300032360|Ga0315334_10786751Not Available824Open in IMG/M
3300032360|Ga0315334_11125118Not Available679Open in IMG/M
3300032820|Ga0310342_101216877All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → unclassified Gimesia → Gimesia sp.891Open in IMG/M
3300032820|Ga0310342_103050654Not Available557Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine43.24%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater18.02%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine10.81%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine8.11%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater7.21%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine4.50%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine1.80%
Water ColumnEnvironmental → Aquatic → Marine → Coastal → Unclassified → Water Column1.80%
Environmental And Host-AssociatedEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Environmental And Host-Associated0.90%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater0.90%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.90%
Marine Surface WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water0.90%
Marine, Hydrothermal Vent PlumeEnvironmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine, Hydrothermal Vent Plume0.90%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2166559018Marine microbial communities from the Atlantic Ocean, for comparison studies - Ocean6 (GOS4441574)EnvironmentalOpen in IMG/M
3300000154Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 150mEnvironmentalOpen in IMG/M
3300000167Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 120mEnvironmentalOpen in IMG/M
3300001971Marine microbial communities from the Sargasso Sea - GS000cEnvironmentalOpen in IMG/M
3300003494Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_150m_DNAEnvironmentalOpen in IMG/M
3300003495Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_150m_DNAEnvironmentalOpen in IMG/M
3300003702Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Microbial AssemblyEnvironmentalOpen in IMG/M
3300004109Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_150m_DNAEnvironmentalOpen in IMG/M
3300005398Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV201EnvironmentalOpen in IMG/M
3300005400Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261EnvironmentalOpen in IMG/M
3300005402Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV73EnvironmentalOpen in IMG/M
3300005408Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV72EnvironmentalOpen in IMG/M
3300005422Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV43EnvironmentalOpen in IMG/M
3300005423Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV47EnvironmentalOpen in IMG/M
3300005425Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV199EnvironmentalOpen in IMG/M
3300005426Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV74EnvironmentalOpen in IMG/M
3300005427Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65EnvironmentalOpen in IMG/M
3300005428Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV253EnvironmentalOpen in IMG/M
3300005429Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV76EnvironmentalOpen in IMG/M
3300005430Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69EnvironmentalOpen in IMG/M
3300005603Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV61EnvironmentalOpen in IMG/M
3300005605Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV67EnvironmentalOpen in IMG/M
3300005837Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18EnvironmentalOpen in IMG/M
3300006013Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_NADW_ad_2500m_LV_BEnvironmentalOpen in IMG/M
3300006166Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91EnvironmentalOpen in IMG/M
3300006902Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_AEnvironmentalOpen in IMG/M
3300007504Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate aEnvironmentalOpen in IMG/M
3300007512Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate bEnvironmentalOpen in IMG/M
3300007514Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate aEnvironmentalOpen in IMG/M
3300007755Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate bEnvironmentalOpen in IMG/M
3300009104Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2umEnvironmentalOpen in IMG/M
3300009126Combined Assembly of Gp0139357, Gp0139356EnvironmentalOpen in IMG/M
3300009173Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134EnvironmentalOpen in IMG/M
3300009376Combined Assembly of Gp0137079, Gp0137080EnvironmentalOpen in IMG/M
3300009409Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150EnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300020262Marine microbial communities from Tara Oceans - TARA_B100000097 (ERX556100-ERR599172)EnvironmentalOpen in IMG/M
3300020328Marine microbial communities from Tara Oceans - TARA_B100001971 (ERX555937-ERR599015)EnvironmentalOpen in IMG/M
3300020344Marine microbial communities from Tara Oceans - TARA_B100001964 (ERX556104-ERR598987)EnvironmentalOpen in IMG/M
3300020361Marine microbial communities from Tara Oceans - TARA_B100000071 (ERX556078-ERR599167)EnvironmentalOpen in IMG/M
3300020373Marine microbial communities from Tara Oceans - TARA_B100000959 (ERX555949-ERR598946)EnvironmentalOpen in IMG/M
3300020423Marine microbial communities from Tara Oceans - TARA_B100000315 (ERX556027-ERR599062)EnvironmentalOpen in IMG/M
3300020435Marine microbial communities from Tara Oceans - TARA_B100000586 (ERX556070-ERR599086)EnvironmentalOpen in IMG/M
3300020444Marine microbial communities from Tara Oceans - TARA_B100001245 (ERX556114-ERR598980)EnvironmentalOpen in IMG/M
3300020470Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)EnvironmentalOpen in IMG/M
3300020476Marine microbial communities from Tara Oceans - TARA_B100001750 (ERX556108-ERR598958)EnvironmentalOpen in IMG/M
3300022225Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_400_PacBio MetaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300022227Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300024252 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_135_MGEnvironmentalOpen in IMG/M
3300026192Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV89 (SPAdes)EnvironmentalOpen in IMG/M
3300026199Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV51 (SPAdes)EnvironmentalOpen in IMG/M
3300026206Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV74 (SPAdes)EnvironmentalOpen in IMG/M
3300026209Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65 (SPAdes)EnvironmentalOpen in IMG/M
3300026210Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV251 (SPAdes)EnvironmentalOpen in IMG/M
3300026211Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV199 (SPAdes)EnvironmentalOpen in IMG/M
3300026257Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69 (SPAdes)EnvironmentalOpen in IMG/M
3300026279Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261 (SPAdes)EnvironmentalOpen in IMG/M
3300026321Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91 (SPAdes)EnvironmentalOpen in IMG/M
3300027630Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_800m (SPAdes)EnvironmentalOpen in IMG/M
3300027838Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)EnvironmentalOpen in IMG/M
3300027844Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)EnvironmentalOpen in IMG/M
3300027847Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)EnvironmentalOpen in IMG/M
3300028198Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_100EnvironmentalOpen in IMG/M
3300028706Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_100mEnvironmentalOpen in IMG/M
3300031766Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515EnvironmentalOpen in IMG/M
3300031861Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 3416EnvironmentalOpen in IMG/M
3300032138Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8EnvironmentalOpen in IMG/M
3300032278Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MGEnvironmentalOpen in IMG/M
3300032360Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915EnvironmentalOpen in IMG/M
3300032820Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MGEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
Ocean6-_008417302166559018Environmental And Host-AssociatedMHNPFSKRNKTKSQIEKRSETKDPLSVEDLLVDGTQKATITSDGRLLAKKDALKDQEEHIDLLKQREWGSC
SI47jul10_150mDRAFT_102549833300000154MarineMNNPFANKQTKASQVNEKRAIKDPLSVEDLLVDGTAKATITSDGRLLAKKDALKSKEEHIDLLKQREW
SI39nov09_120mDRAFT_103450113300000167MarineMNNPFANKQTKASQVNEKRAIKDPLSVEDLLVDGTAKATITSDGRLLAKKDALKSKEEHIDL
GOS2215_1003369733300001971MarineMHNPFSKRNKTKSQIEKRSETKDPLSVEDLLVDGTQKATITSDGRLLAKKDALKDQEEHIDLLKQREWGSC*
JGI26240J51127_100584023300003494MarineMNNPFANKQTKASQVNEKRAIKDPLSVEDLLVDGTAKATITSDGRLLAKKDALKSKEEHIDLLKQREWGVK*
JGI26244J51143_103086933300003495MarineNQIKNKQNKEIKMNNPFANKQTKASQVNEKRAIKDPLSVEDLLVDGTAKATITSDGRLLAKKDALKSKEEHIDLLKQREWGVK*
PicMicro_1001611033300003702Marine, Hydrothermal Vent PlumeMYNPFAKKENKKASLDEKKTNQDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQREWGCQ*
Ga0008650_119688213300004109MarineMFNPFSKKQTKPSSIEDKKATQDPLEVEDLLVDGTQKATITSDGRLLSKGDSLKDKEEHIDLLKQREWGLK*
Ga0066858_1000756343300005398MarineMYNPFAKKENKKARLDEKKTNHDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQREWGCR*
Ga0066858_1001097813300005398MarineMFNPFSKKEKSQPSIENVATTQDPLSVEDLLVDGTQKATITSDGKLVSKKDALKDKEEHIDLLKQREWGNK*
Ga0066858_1002398623300005398MarineMYNPFAKKENKKASLDEKKTNQDPLSVENLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQREWGCQ*
Ga0066867_1018647713300005400MarineMNNPFASKQTKTSQVNEKRAIKDPLSVEDLLVDGTAKATITSDGRLLAKKDALKGKEEHIDLLKQREWGVK*
Ga0066867_1025245623300005400MarineGVNMSNPFSKKQNKLSQVDETKPVQDPLSVEDLLIDGTQKATITSDGRLLSKKDALKDKEEHIDLLKQREWGSNELVG*
Ga0066867_1035845713300005400MarineMTMFNPFSKKQSKVSSIEDKKSTQDPLEVEDLLVDGTKKATITSDGRLLSKGDSLKDKEEHIDLLKQREWGGVE*
Ga0066855_1025304213300005402MarineMFNPFSKKDNQPTQPEGSKSSQDPLNVEDLLVDGTQKATITSDGRLVSKKDALKDKEEHIDLLKQREWGNS*TG
Ga0066855_1027480213300005402MarineMFNPFSKKQTKPSSIEDKKATRDPLEVEDLLVDGTQKATITSDGRLLSKGDSLKDKEEHIDLLKQREWGLK*
Ga0066848_1002874713300005408MarineMYNPFAKKENKKASLDEKKTNQDPLSVENLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQREWGCR*
Ga0066829_1002722723300005422MarineMYNPFAKKENKKASLDEKKTNQDPLSVENLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQREWGYR*
Ga0066829_1011358813300005422MarineMYNPFAKKENKKARLDEKKTNHDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQ
Ga0066829_1019657623300005422MarineMYNPFAKKENKKASLDEKKTSQDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQ
Ga0066828_1028261113300005423MarineMFNPFSKKQSKVSSIEDKKSTQDPLEVEDLLVDGTKKATITSDGRLLSKGDSLKDKEEHIDLLKQREWGGVE*
Ga0066828_1031445013300005423MarineKKMYNPFTKKEKKQKPLEEKKSPQDPLSVEDLLVDGTQKATITSDGRLVSKKDALKDKKEHIDLLKQREWGN*
Ga0066859_1011181513300005425MarineMYNPFTKKEKKQKPLEEKKSPQDPLSVEDLLVDGTQKATITSDGRLVSKKDALKDKKEHIDLLKQREWGN*
Ga0066859_1016904613300005425MarineMYNPFAKKENKKASLDEKKTNQDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDKEEHIDL
Ga0066847_1001401233300005426MarineMENKIIKGEKMYNPFAKTENKKASLDEKKTNQDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQREWGYR*
Ga0066851_1022813613300005427MarineMSNPFSKKQNKLSQVDETKPVQDPLSVEDLLVDGTSKATITSDGRLLSKKDALKDKEEHIDLLKQREW
Ga0066863_1011803033300005428MarineMFNPFSKKENKKSKPEEDKSPKDPLSVEDLLVDGTQRATITSDGRLLAKKDALKDKEEHIDLLKQREWGSK*
Ga0066846_1029934323300005429MarineMNPFSKKQNKLSQVDDTQTVQDPLSVEDLLVDGTSKATITSDGRLLSKKDALKDKEEHIDLLKQREWGVK*
Ga0066849_1031959313300005430MarineMSNPFSKKQNKLSQVDETKPVQDPLSVEDLLIDGTQKATITSDGRLLSKKDALKDKEEHIDLLKQREWGSNELVD*
Ga0066853_1019427323300005603MarineTKPSSIEDKKATQDPLEVEDLLVDGTQKATITSDGRLLSKGDSLKDKEEHIDLLKQREWGLK*
Ga0066853_1019795213300005603MarineMYNPFAKKENKKASLDEKKTNQDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQREW
Ga0066850_1020391823300005605MarineIGVNMSNPFSKKQNKLSQVDETKPVQDPLSVEDLLIDGTQKATITSDGRLLPKKDALKDKEEHIDLLKQREWGSNELVG*
Ga0078893_1106954133300005837Marine Surface WaterMFNPFSKKDNKKTSTVEHHRSEDPLSVEDLLVDGSKKATITSDGRLLSKKDAIKDKEEHIDLLKQREWGVER*
Ga0066382_1024032523300006013MarineMSNPFSKKQNKLSQVDETKTVQDPLSVEDLLIDGTQKATITSDGRLLSKKDALKDNEEHIDLLKQREWGSNGPTK*
Ga0066836_1020125623300006166MarineMKNPFAVKQTKPTTVGEKKPNQDPLEVEDLLVDGTKKATITSDGRLLSKSDSLKDKEEHIDLLKQREWGSK*
Ga0066836_1035258133300006166MarineMFNPFSKKQPKATSVEDNKSTQDPLEVEDLLIDGSRKATITSDGRLLSKSDSLKDNEEHIDLLKQREWGC*
Ga0066836_1096488313300006166MarineMYNPFSKKENKKPDAANEKSTKDPLSVEDLMVDGSKKATITSDGRLLSKKDALKGKEEHIDLLKQREWGGEK*
Ga0066372_1050021913300006902MarineMFNPFSKKENQPTQPEDNKSSKDPLNVEDLLVDGTQKATITSDGRLVSKKDALKDKEEHIDLLKQREWGDS*
Ga0104999_100971633300007504Water ColumnMFNPFAKKQNKPSSIEDEKATQDPLEVEDLLVDGTQKATITSDGRLLSKSESLKDKEEHIDLLKQREWG*
Ga0104999_113570113300007504Water ColumnMNPFAQKQNKPSQTGAAKDIQDPLSVEDLLVDGTSKATITSEGQLISKKDALKDNVEHIDLLKQREW
Ga0105016_117448943300007512MarineMNPFAKKQNKPSQPGAAKDIQDPLSVEDLLVDGTSKANITSEGQLISKKDALKDNVEHIDLLKQREWGTSILQRASNLGYFVPWF
Ga0105020_100434853300007514MarineMFNPFARKQNKPSSIEDKKATQDPLEVEDLLVDGTQKATITSDGRLLSKGDSLKDKEEHIDLLKQREWGLK*
Ga0105020_109169413300007514MarineMFNPFAKKENKKSKPEENKSPKDPLSVEDLLVDGTQRATITSDGRLLAKKDALKDKEEHIDLLKQREWGDK*
Ga0105014_111779923300007755MarineKTSQVNEKRAIKDPLSVEDLLVDGTAKATITSDGRLLAKKDALKGKEEHIDLLKQREWGVK*
Ga0117902_118840233300009104MarineQPKATSVEDKKSTQDPLEVEDLLIDGSRKATITSDGRLLSKSDSLKDNEEHIDLLKQREWGC*
Ga0117902_145499413300009104MarineMYNPFSKKPKKSTKIQDKIEKKDPLSVEDLLVDGTQKATITSDGRLISKKDALKDSEEHIDLLKQREWGIR*
Ga0117902_178115113300009104MarineMSNPFSKKQNKLSQVEETKPVQDPLSVEDLLVDGTSKATITSDGRLLSKKDALKDKEEHIDLLKQREWGSNGPTK*
Ga0118723_120714723300009126MarineMFNPFARKQNKPSSIEDKKATQDPLEVEDLLVDGTQKATITSDGRLLSKGDSLKDKE
Ga0114996_1002701133300009173MarineMSNPFSKKQNKLSQVDETKTVQDPLSVEDLLIDGTQKATITSDGRLLSKKDALKDKEEHIDLLKQREWGSNELVG*
Ga0114996_1031252313300009173MarineMFNPFSKKQSKVSSIEDKKSTQDPLEVEDLLIDGTKKATITSDGRLLSKGDSLKDKEEHIDLLKQREWGVVE*
Ga0118722_108288113300009376MarineMFNPFAKKQNKPSSIEDEKATQDPLEVEDLLVDGTQKATITSDGRLLSKSESLKDKEEHIDLLKQREW
Ga0114993_1107204613300009409MarineSSIEDKKSTQDPLEVEDLLIDGTKKATITSDGRLLSKGDSLKDKEEHIDLLKQREWGVVE
Ga0133547_1187226423300010883MarineMFNPFSKKQTKPSSIEDKKATREPLEVEDLLVDGTQKATITSDGRLLSKGDSLKDKEEHIDLLKQREWGLK*
Ga0160423_1079502423300012920Surface SeawaterFSKKNKTKSQIEKRSETKDPLSVEDLLVDGTQKATITSDGRLLAKKDALKDQEEHIDLLKQREWGSC*
Ga0211537_105582623300020262MarineMFNPFSKKEKSQPSIENVATTQDPLSVEDLLVDGTQKATITSDGKLVSKKDALKDKEEHIDLLKQREWGNK
Ga0211567_103395933300020328MarineMYNPFAKTENKKASLDEKKTSQDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQREWGCR
Ga0211570_107332213300020344MarineFSKKEKSQPSIENVATTQDPLSVEDLLVDGTQKATITSDGKLVSKKDALKDKEEHIDLLKQREWGNK
Ga0211531_120499523300020361MarineMYNPFAKKENKKASLDEKKTSQDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQREWG
Ga0211660_1003488213300020373MarineKASLDEKKTNQDPLSVENLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQREWGYR
Ga0211525_1023273013300020423MarineMYNPFAKKENKKASLDEKKTSQDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQREWGYR
Ga0211525_1038176213300020423MarineKKEKSQPSIENVATTQDPLSVEDLLVDGTQKATITSDGKLVSKKDALKDKEEHIDLLKQREWGNK
Ga0211525_1046686813300020423MarineMFNPFAKKENKKASLDDKKTNRDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDKIGAA
Ga0211639_1035664223300020435MarineMFNPFSKKDNQPTQPEGNKSSKDPLNVEDLLVDGTQKATITSDGRLVSKKDALKDKEEHIDLLKQREWGNS
Ga0211578_1015266433300020444MarineMFNPFSKKQSKPSSIEDKKATQDPLEVEDLLVDGTKKATITSDGRLLSKGDSLKDKEEHIDLLKQREWGSQ
Ga0211543_1030685123300020470MarineMFNPFSKKDNKKTKPEENITPNDPLTVEDLLVDGTQKATITSDGRLLSKKDAIKDKEEHIDLLKQREWGVK
Ga0211715_1028014113300020476MarinePFSKKDNKKTSPSEQQSTKDPLSVEDLLVDGSKKATITSDGRLLSKKDAIKGKEEHIDLLKQREWGGEK
Ga0187833_10006453113300022225SeawaterMINPFSRKENKISSLDEKKANQDPLAVEDLLVNGTQKATITSDGRLVTKKNALKDKEEHIDLMKQREWGCR
Ga0187833_1001267923300022225SeawaterMYNPFAKKENKKASLDEKKTNQDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQRERGCQ
Ga0187833_1001924173300022225SeawaterMENKIIKGEKMYNPFAKTENKKASLDEKKTNQDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQREWGYR
Ga0187833_1005142933300022225SeawaterMYNPFAKKENKKARLDEKKTNHDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQREWGCR
Ga0187833_1005813213300022225SeawaterMFNPFSKKQTKPSSIEDKKATQDPLEVEDLLVDGTQKATITSDGRLLSKGDSLKDKEEHIDLLKQREWGLK
Ga0187833_1013096833300022225SeawaterMYNPFAKKENKKASLDEKKTNQDPLSVENLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQREWGYR
Ga0187833_1017220613300022225SeawaterMYNPFAKKENKKASLDEKKTNQDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQREWGCQ
Ga0187833_1018947113300022225SeawaterMFNPFSKKENKKSKPEEDKSPKDPLSVEDLLVDGTQRATITSDGRLLAKKDALKDKEEHIDLLKQREWGSK
Ga0187833_1020694623300022225SeawaterMFNPFSKKQSKVSSIEDKKSTQDPLEVEDLLVDGTKKATITSDGRLLSKGDSLKDKEEHIDLLKQREWGGVE
Ga0187833_1020933923300022225SeawaterMYNPFAKKENKKASLDEKKTSQDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQREWGCR
Ga0187833_1025682833300022225SeawaterMYNPFTKKEKKQKPLEEKKSPQDPLSVEDLLVDGTQKATITSDGRLVSKKDALKDKKEHIDLLKQREWGN
Ga0187833_1046864313300022225SeawaterMFNPFSKKQSKVSSIDDKKSTQDPLEVEDLLVDGTKKATITSDGRLLSKGDSLKDKEEHIDLLKQREWGGVE
Ga0187833_1049409023300022225SeawaterMNNPFAKKQTSQSKLSKKTEREDPLSVEDLLVDGTKKATITSDGRLLSKNDSLKDKEEHVDLLKQREWGIK
Ga0187827_1020548423300022227SeawaterMYNPFAKKENKKASLDEKKTNQDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQREWGCR
Ga0187827_1035350923300022227SeawaterMNPFSKKQNKLSQVDDTQTVQDPLSVEDLLVDGTSKATITSDGRLLSKKDALKDKEEHIDLLKQREWGLK
Ga0187827_1077333113300022227SeawaterMSNPFSKKQNKLSQVDETKPVQDPLSVEDLLIDGTQKATITSDGRLLSKKDALKDKEEHIDLLKQREWGSNELVG
(restricted) Ga0233435_104514733300024252SeawaterMNNPFANKQTKASQVNEKRAIKDPLSVEDLLVDGTAKATITSDGRLLAKKDALKSKEEHIDLLKQREWGVK
Ga0207986_101492723300026192MarineMYNPFAKKENKKASLDEKKTNQDPLSVENLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQREWGCR
Ga0208638_116484113300026199MarineKKQTKPSSIEDKKATQDPLEVEDLLVDGTQKATITSDGRLLSKGDSLKDKEEHIDLLKQREWGLK
Ga0207988_103212333300026206MarineMYNPFAKTENKKASLDEKKTNQDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQREWGYR
Ga0207989_108851423300026209MarineMNNPFASKQTKTSQVNEKRAIKDPLSVEDLLVDGTAKATITSDGRLLAKKDALKGKEEHIDLLKQREWGVK
Ga0208642_102363033300026210MarineMFNPFSKKQSKVSSIEDKKSTQDPLEVEDLLVDGTKKATITSDGRLLSKGDSLKDKEEH
Ga0208132_108847123300026211MarineFTKKEKKQKPLEEKKSPQDPLSVEDLLVDGTQKATITSDGRLVSKKDALKDKKEHIDLLKQREWGN
Ga0208132_113704523300026211MarineMYNPFAKKENKKASLDEKKTSQDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDKEE
Ga0208407_108003223300026257MarineMKNPFAVKQTKPTTVGEKKPNQDPLEVEDLLVDGTKKATITSDGRLLSKSDSLKDKEEHIDLLKQREWGS
Ga0208411_119036623300026279MarineMTMFNPFSKKQSKVSSIEDKKSTQDPLEVEDLLVDGTKKATITSDGRLLSKGDSLKDKEEHIDLLKQREWGGVE
Ga0208764_1017569523300026321MarineMKNPFAVKQTKPTTVGEKKPNQDPLEVEDLLVDGTKKATITSDGRLLSKSDSLKDKEEHIDLLKQREWGSK
Ga0209432_114259523300027630MarineFNPFSKKDNQPTQPEGSKSSQDPLNVEDLLVDGTQKATITSDGRLVSKKDALKDKEEHIDLLKQREWGNS
Ga0209089_1026873423300027838MarineMSNPFSKKQNKLSQVDETKTVQDPLSVEDLLIDGTQKATITSDGRLLSKKDALKDKEEHIDLLKQREWGSNELVG
Ga0209501_1073436423300027844MarineMFNPFSKKQSKVSSIEDKKSTQDPLEVEDLLIDGTKKATITSDGRLLSKGDSLKDKEEHIDLLKQREWGVVE
Ga0209402_1079174213300027847MarineMSNPFSKKQNKLSQVDETKTVQDPLSVEDLLIDGTQKATITSDGRLLSKKDALKDKEEHIDL
Ga0257121_108559413300028198MarineKASQVNEKRAIKDPLSVEDLLVDGTAKATITSDGRLLAKKDALKSKEEHIDLLKQREWGV
Ga0257115_113076623300028706MarineNPFANKQTKASQVNEKRAIKDPLSVEDLLVDGTAKATITSDGRLLAKKDALKSKEEHIDLLKQREWGVK
Ga0315322_1015812043300031766SeawaterMYNPFANKQSKASSMEDEKATKDPLEVEDLLVDGSKKATITSDGRLQSKGDSLKDKEEHIDLLKQREWGSQ
Ga0315319_1067849713300031861SeawaterMFNPFSKKDNQPTQPEGNKSSQDPLNVEDLLVDGTQKATITSDGRLVSKKDALKDKEEHIDLLKQREWGNS
Ga0315338_100120573300032138SeawaterMFNPFSKKQSKATSIEDKKATQDPLEVEDLLVDGTKKATITSDGRLLSKGDSLKDKEEHIDLLKQREWGAQ
Ga0315338_1001735243300032138SeawaterMINPFRKKENKKSNLEEKKERQDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDEEEHIDLLKQREWGSK
Ga0315338_1002711173300032138SeawaterMFNPFSKKQTKPSSIEDKKATQDPLEVEDLLVDGTKKATITSDGRLLSKGDSLKDKEEHIDLLKQREWGSQ
Ga0310345_1101953713300032278SeawaterMFNPFSKKQSKVSSIDDKKSTQDPLEVEDLLVDGTKKATITSDGRLLSKGDSLKDKEEHIDLLKQREWGGAE
Ga0310345_1229724623300032278SeawaterMNNPFIKKEAKQSKPEEKKPVQDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQREWGSK
Ga0315334_1045613713300032360SeawaterNPFSKKQNKLSQVDDTQTVQDPLSVEDLLVDGTSKATITSDGRLLSKKDALKDKEEHIDLLKQREWGLK
Ga0315334_1078675123300032360SeawaterMSNPFSKKQNKLSQVDETKPVQDPLSVEDLLIDGTQKATITSDGRLLSKKDALKDKEEHIDLLKQREWGSNELVD
Ga0315334_1112511813300032360SeawaterMNNPFIKKEAKQSKPEEKKPVQDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDKEEHIDLLKQREWGS
Ga0310342_10121687733300032820SeawaterMFNPFSKKQSKPSSIEDKKATQDPLEVEDLLVDGTQKATITSDGRLLSKGDSLKDKEEHIDLLKQREWGLK
Ga0310342_10305065413300032820SeawaterMNNPFIKKEAKQSKPEEKKPVQDPLSVEDLLVDGTQKATITSDGRLVTKKDALKDKEEHI


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