Basic Information | |
---|---|
Family ID | F086146 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 111 |
Average Sequence Length | 38 residues |
Representative Sequence | GSVERRGTGIATPSSRRRVDGVEDDAMIQHERAVKF |
Number of Associated Samples | 28 |
Number of Associated Scaffolds | 111 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | Yes |
Most common taxonomic group | Eukaryota |
% of genes with valid RBS motifs | 0.90 % |
% of genes near scaffold ends (potentially truncated) | 94.59 % |
% of genes from short scaffolds (< 2000 bps) | 97.30 % |
Associated GOLD sequencing projects | 26 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.15 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Eukaryota (95.495 % of family members) |
NCBI Taxonomy ID | 2759 |
Taxonomy | All Organisms → cellular organisms → Eukaryota |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (46.847 % of family members) |
Environment Ontology (ENVO) | Unclassified (69.369 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (94.595 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52 |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.15 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Marine Seawater Seawater Marine Surface Seawater Seawater Seawater Marine Ocean Water |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0066841_100186473 | 3300005599 | Marine | GSVERRGTGIATPSSRRRVDGVEDDAKIQHERAVKF* |
Ga0066836_104199453 | 3300006166 | Marine | RGRPGSVERRGTGIATPSSRRRVDGVEVDAKIQHERAVKF* |
Ga0068500_14506572 | 3300006332 | Marine | LVDRRGTGIATPSSRRRVDGVEDDATMQRERAVKF* |
Ga0111541_105005162 | 3300008097 | Marine | GSIERWGTDIATPSSKRRVDGVEVDTTVQHERAVKF* |
Ga0103710_101625541 | 3300009006 | Ocean Water | SIERGGTGIATPSSRRRVDGVKVDATIQHERAAKF* |
Ga0115013_102856672 | 3300009550 | Marine | SVEWRGTGTATPSSRRRVDGVEVDATIQDERAVKF* |
Ga0115013_103051591 | 3300009550 | Marine | RSRPGSVERRGTGIVTPSSRRRVDGVEDDVIIQHERAVKF* |
Ga0115013_105884761 | 3300009550 | Marine | RPGSVERRGTGTSTPSSKRRVDGVEDAAMIQHERAVTF* |
Ga0115013_110887822 | 3300009550 | Marine | GSVERRGTGIATPSSRRRIDGVEEDAMIRHERAVKF* |
Ga0115013_112812011 | 3300009550 | Marine | PGSVKRRGTGIATPSSRRRVDGVEADATIQHERPVKF* |
Ga0115013_114131051 | 3300009550 | Marine | INQCVGWRGTGTATPSSRRRVDGVEVDATIQDERAVKF* |
Ga0115011_100493235 | 3300009593 | Marine | SVERRGTGIATPSSRRRVDGVEDDAAIQHERAVKF* |
Ga0115011_106379613 | 3300009593 | Marine | CRPGSVERRGTGIATPSSRRRVDGVEDDAAIQHERAVKF* |
Ga0115011_109722671 | 3300009593 | Marine | GSVERRGTGIATPSSRHRVDGVEVDATIQHERAVKF* |
Ga0115011_110171502 | 3300009593 | Marine | GSVERQGTGIATPSSRRRIDGFEDDAMIQHERAVKI* |
Ga0115011_111498892 | 3300009593 | Marine | RPGSVERRGTGIATPSSRRRVDGVEDDAAIQHERAVKF* |
Ga0115011_113316072 | 3300009593 | Marine | GCPGSVERRETGIATPSSRRRVDGVEDDAAMQHERAVKF* |
Ga0115011_113487511 | 3300009593 | Marine | MAWPSWLVERRRIGTTTLSSRRRVDGVEVDATIQRAVKF* |
Ga0115011_114618392 | 3300009593 | Marine | WRGRPGFVERRGIGIVTPSSGPRVDGVEDDAMIQHERAANF* |
Ga0115011_115384303 | 3300009593 | Marine | VERRGIGIVTPSSRPRVDGVEDDAMIQHERAVNF* |
Ga0115011_115835393 | 3300009593 | Marine | SVERRGTGIATPSSRRRVDGVEDDAMIQHERAVKF* |
Ga0115011_116483472 | 3300009593 | Marine | SVERRGTGIATPSSRRRVDGVEDDATIQDRRAVKF* |
Ga0115011_116840681 | 3300009593 | Marine | GRPGSVERRGTGIATPSSRRRVDGVEDDVTIQRERVVKF* |
Ga0115011_118253281 | 3300009593 | Marine | IISRRRRGHAGSVERRGTGIATPSSRRRVDGVEDDAAIQDEHAVKF* |
Ga0115011_118408522 | 3300009593 | Marine | VERRGTGIATPSSRRRVDGVEDDAMIQHDRAVKF* |
Ga0115011_119888211 | 3300009593 | Marine | PGSVEWRGTGIATPSSRRRVDGVEDDAMIQHERAVKL* |
Ga0115011_121937211 | 3300009593 | Marine | PGSVERRGTGIATPSSRRRVDGVEDDATMQHERAAP* |
Ga0115011_122031423 | 3300009593 | Marine | GSVERRGTGIATPSSRRRVDGVEDDATIQYERAVKF* |
Ga0115011_122139322 | 3300009593 | Marine | PGSVELRGTGIATPSSRRRVDGVEDDAMIQHERAVKV* |
Ga0115011_122542281 | 3300009593 | Marine | RPGSVERRGTGIATPSSRRRVDGVEDDAMIQHERAIKF* |
Ga0115012_102789331 | 3300009790 | Marine | GSVEWRGTGIATPSSRRRVDGVEDDAMIQHERAVKL* |
Ga0115012_104192421 | 3300009790 | Marine | VCGSVERRGIGIATPSSRRRVDGVEDDAMIQHERAVKF |
Ga0115012_104481081 | 3300009790 | Marine | VTSLRWRGCPGLVERRGTGIATPSSRRCVDGVEDDAAIQHERAVKF* |
Ga0115012_104524353 | 3300009790 | Marine | GRAGSGERRGIGIATPSSRRRVDGVEDDAMIQHERAVKF* |
Ga0115012_105351663 | 3300009790 | Marine | GSVERRGTGIATPSSRRRIDGVEDDAMIQHERAVKF* |
Ga0115012_106457791 | 3300009790 | Marine | PGSVERRGSDTATPSSRRRVDGVEDDAMIQHERAVKF* |
Ga0115012_106646723 | 3300009790 | Marine | SVERRGTGIATPSSRRRVDGVEDDATIQHERAVTF* |
Ga0115012_109693482 | 3300009790 | Marine | VERRGTGIATPSSRRRVDGVEDDAAIQHERAVKF* |
Ga0115012_110185642 | 3300009790 | Marine | AVWKSTSVSGTGIATLSSRRRVDGVEVDATNQHERAVTP* |
Ga0115012_112058281 | 3300009790 | Marine | RRWRGRPGSVERRGTGIATPSSRRRVDGVEDDATIHHERAVKF* |
Ga0115012_112192561 | 3300009790 | Marine | SVEWRGTGIATPSSRRRVDGVEDDAMIQHERAVKF* |
Ga0115012_114101822 | 3300009790 | Marine | GSIERRGTGIATPSSRRRVDGVEDDAVIQHERTVTF* |
Ga0115012_114210172 | 3300009790 | Marine | RPGSVERRGTGIATPSSRRRVDGVEDDAMIRHERAVKL* |
Ga0115012_117057731 | 3300009790 | Marine | PGSVERRGTGIATPSSRRRVDGVEDDAMIQHKRAVKF* |
Ga0115012_118471451 | 3300009790 | Marine | RGRPGSVERRGTGIATPSSRRRVDGVEVAATIQNERAVKF* |
Ga0115012_119272102 | 3300009790 | Marine | VERRGTGIATPSSRHRVDGVEDDATIQHEPAVKF* |
Ga0115012_119338481 | 3300009790 | Marine | PGSVERRGTGITTPSSRRRVDGVEDDATIQHERAVKF* |
Ga0115012_120803131 | 3300009790 | Marine | RGRPDSVERRGTGIATPSSRRRVDGVEDDAMIQHERAVKF* |
Ga0160422_103074271 | 3300012919 | Seawater | VASGSLDRVTGIATPSSRRRVDGVEDDAAIQHERAVKF* |
Ga0160422_106678202 | 3300012919 | Seawater | VEITVERRGTGIAAPSRRRRVDGVEDDAMIQHERAVKF* |
Ga0160422_107847412 | 3300012919 | Seawater | MRTGTATPSSRRRVDGMEGDATIQHERAVKFLFPHR |
Ga0163110_104384053 | 3300012928 | Surface Seawater | GSVERRGTGIATPSSSRRVDGVEEDAAIQHERAVKF* |
Ga0163110_106883421 | 3300012928 | Surface Seawater | RPGSVERRRTGIATPSSRHRVDGVEDDAMIQRERAVKF* |
Ga0163110_110875013 | 3300012928 | Surface Seawater | SVERRRTGIATPSSRHRVDGVEDDSMIEHERAVKF* |
Ga0163110_113136952 | 3300012928 | Surface Seawater | PGSVERRGTGIATPSSRRRVDGVEDDAMIQHERAVKF* |
Ga0163110_116220641 | 3300012928 | Surface Seawater | GSVERRGTGIATPSSRRRVDGVEVDATIQRELAVKF* |
Ga0163109_102607564 | 3300012936 | Surface Seawater | VERLGTGIATPSSRRRIDGVEDDAMIEHKRAVKF* |
Ga0163109_106565102 | 3300012936 | Surface Seawater | VERRGTGIATPSSRRRVDGVGDDATIQRERAVKF* |
Ga0163109_113321551 | 3300012936 | Surface Seawater | HGSVERRGTSIATPSSRRRVDGVEVDATIQHERAVKS* |
Ga0163180_100753802 | 3300012952 | Seawater | MTRPTCGWVERRGTGIATPSSRRRVDGVEDDATIQHERAVKF* |
Ga0163180_101024213 | 3300012952 | Seawater | SVERRGTGIATPSSRRRVDGVEVDAAIQRERAVKF* |
Ga0163180_101461611 | 3300012952 | Seawater | NQPVRRVCGSVERRGIGIATPSSRRRVDGVEDDAMIQHERAVKF* |
Ga0163180_102615271 | 3300012952 | Seawater | GSVERRGIGIATPSSRRRVDGVEDDDVIQHERVVKF* |
Ga0163180_103602842 | 3300012952 | Seawater | VERRGTGIATPSSRCRVDGVEDDAMIQHERAVKF* |
Ga0163180_105345363 | 3300012952 | Seawater | GPVERRGTGIATPSSRRRIDGVEVDAKIQHERAV* |
Ga0163180_105634561 | 3300012952 | Seawater | PGSVERRGTGIATPSSRRRVDGVEDDATIQRERAVKF* |
Ga0163180_106622832 | 3300012952 | Seawater | GSVERRGTGIATPSSRRRVDGVEDDAMIQHERAVKF* |
Ga0163180_107359273 | 3300012952 | Seawater | AGSVERRGTGTATPSNIYHEDGVEVDATIQHERAVKF* |
Ga0163180_107525262 | 3300012952 | Seawater | PGSVERRGTGIATPSSRHRVDGVEDDATIQHERAVNF* |
Ga0163180_108241152 | 3300012952 | Seawater | VERRGTGIATPSSRRRVDGVEDDAMIQHERAVKL* |
Ga0163180_109176003 | 3300012952 | Seawater | PGSVERRGTGIATPSSRRRVDGVEDEAMIQHERAVKF* |
Ga0163180_110413642 | 3300012952 | Seawater | SVERRGTGIATPSSRRRVDGVEDDATIQHERAVNF* |
Ga0163180_113036411 | 3300012952 | Seawater | RPGSVERRGTGIATPSSRRRVDGVEDDAMIQHERAVKF* |
Ga0163180_115135201 | 3300012952 | Seawater | RGRPGSVERRGTGIATPSSRRCVDGVEDDATIQHERAVKF* |
Ga0163180_117478992 | 3300012952 | Seawater | VERRGTGIATPSSRRRVDGVEDDAMIQHERAVKF* |
Ga0163180_117981471 | 3300012952 | Seawater | RPGSVERRGTGIATPSSRRRVDGVEEDAMIQHERAVKF* |
Ga0163179_102107641 | 3300012953 | Seawater | GRPGSVERRGTGIATPSSRRRVDGVEDETMIQHERAVKF* |
Ga0163179_107187442 | 3300012953 | Seawater | GSVERRGTGIATPSSRRRVDGVEDDAAIQHERAVKF* |
Ga0163179_109879842 | 3300012953 | Seawater | GRPGSVEWRGTGIATPSSRRRVDGVEDDAMIQHERAVKF* |
Ga0163179_113648151 | 3300012953 | Seawater | GRPGFVERRGIGIVTPSSRPRVDGVEDAMIQDERAVNF* |
Ga0163179_116641592 | 3300012953 | Seawater | AASVERRGTGIATPSSRRRVDGVEVDATIQHEGAVKL* |
Ga0163179_116985871 | 3300012953 | Seawater | VERRGTDIATPSSRRRVDGVEDDAAIQHERAVKF* |
Ga0163111_103462861 | 3300012954 | Surface Seawater | RPGSVEWRGTGIATPSSRRRVDGVEDDAMIQHERAVKF* |
Ga0163111_106588425 | 3300012954 | Surface Seawater | RGRAGSVERRGIGIATPSSRRRVDGVERDAMIQHERAVKF* |
Ga0163111_109433131 | 3300012954 | Surface Seawater | PGSLARRGTGIATPSSMRRVDGVEDDAMIQHARAVKL* |
Ga0163111_118552051 | 3300012954 | Surface Seawater | RGRPGSVERRGTGIATPSSRRRVDGEEVDATIQHEGAVK* |
Ga0163111_120013222 | 3300012954 | Surface Seawater | RPGSVERRGTGIATPSSSRRVDGVEDDAMIQHERAVKF* |
Ga0163111_123049342 | 3300012954 | Surface Seawater | MTLERRGPGIATPSSRRRVDGVEDDATIQHERTVKF* |
Ga0163111_124115762 | 3300012954 | Surface Seawater | GARGRPGSVERRGTGIATPSSRRRVDGVEDDATIQHERAVKV* |
Ga0163111_127566531 | 3300012954 | Surface Seawater | VISWRWRGRAGSIERRGTGIATPSSRRVDGVEDGAMIQHERAVKF* |
Ga0211628_10205732 | 3300020311 | Marine | PGSVERRGTGIATPSSRRRVDGVEDDAMIQHERAVKF |
Ga0211545_105164671 | 3300020452 | Marine | GSVERQGTGIATPSSRRRIDGVEVDAKIQRERAVKS |
Ga0211550_101512461 | 3300020453 | Marine | RARAGSVERRGTGIATPSSRRRVDGVEDDATMQHERTVKF |
Ga0211548_100385911 | 3300020454 | Marine | GLVDRRGTGIATPSSRRRVDGVEDDATMQRERAVKF |
Ga0211548_104708123 | 3300020454 | Marine | SVERRGTGIATPSSRRRVDGVEDDATIQHERAVKF |
Ga0211694_104627611 | 3300020464 | Marine | AGSVERRGIGTATPSSRHRVDCVEVDATMQHERAVKF |
Ga0211640_105164872 | 3300020465 | Marine | SVERRGTGIATPSSRRRVDGVEDDAAIQHERAVKF |
Ga0211713_103823421 | 3300020467 | Marine | TSVSGARGTGIATPSSRRRVDGVEDDAMIQHERAVTF |
Ga0211579_103114441 | 3300020472 | Marine | LGRPGSVERRGTGIATPSSRRRVDDVEDDAMIQHERAVTF |
Ga0209503_100716431 | 3300027859 | Marine | ASGARSVEWRGTGTATPSSRRRVDGVEVDATIQDERAVKF |
Ga0209503_106535732 | 3300027859 | Marine | VWKSASASGGSVERRGTGIATPSSKRRVDGVEDDAMIQHERAVKF |
Ga0209503_106614612 | 3300027859 | Marine | INQCVGWRGTGTATPSSRRRVDGVEVDATIQDERAVKF |
Ga0209404_101248641 | 3300027906 | Marine | PGSVERQGTGIATPSSRRRIDGFEDDAMIQHERAVKI |
Ga0209404_105344101 | 3300027906 | Marine | MTRPPGSVERRGTGIATPSSRRRVDGVEDDAMIQHG |
Ga0209404_110012132 | 3300027906 | Marine | MTWPSVERRGTGIATPSSRRHVDGVQVDATIQHERAVKF |
Ga0310343_101360181 | 3300031785 | Seawater | SVERRGTGIATPSSRRRVDGVEDDAAIQDERAVKF |
Ga0310343_103595401 | 3300031785 | Seawater | ISRRWRGRPGSVERRGTGITTPSSRRRVDGVAVDATIQHERAVKI |
Ga0310343_114069811 | 3300031785 | Seawater | PGSVERRGTGIATPSSRRRVDGVEDDAAIQDERAVKF |
Ga0310344_112704712 | 3300032006 | Seawater | SVERQGTGIATPSSRRRVDGVEDDAMIQHERAVKF |
Ga0315315_111208022 | 3300032073 | Seawater | SVERRVTGIATLSSRRRVDGVEDDAKNLHERAVKF |
Ga0310342_1014408552 | 3300032820 | Seawater | ISRRRRGRPGSLERRGTGIATPSSRHRVDGVEVDATIQHERAVKF |
⦗Top⦘ |