NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F086146

Metagenome / Metatranscriptome Family F086146

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F086146
Family Type Metagenome / Metatranscriptome
Number of Sequences 111
Average Sequence Length 38 residues
Representative Sequence GSVERRGTGIATPSSRRRVDGVEDDAMIQHERAVKF
Number of Associated Samples 28
Number of Associated Scaffolds 111

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Eukaryota
% of genes with valid RBS motifs 0.90 %
% of genes near scaffold ends (potentially truncated) 94.59 %
% of genes from short scaffolds (< 2000 bps) 97.30 %
Associated GOLD sequencing projects 26
AlphaFold2 3D model prediction Yes
3D model pTM-score0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Eukaryota (95.495 % of family members)
NCBI Taxonomy ID 2759
Taxonomy All Organisms → cellular organisms → Eukaryota

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(46.847 % of family members)
Environment Ontology (ENVO) Unclassified
(69.369 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(94.595 % of family members)



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Multiple Sequence Alignments

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Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52
1Ga0066841_100186473
2Ga0066836_104199453
3Ga0068500_14506572
4Ga0111541_105005162
5Ga0103710_101625541
6Ga0115013_102856672
7Ga0115013_103051591
8Ga0115013_105884761
9Ga0115013_110887822
10Ga0115013_112812011
11Ga0115013_114131051
12Ga0115011_100493235
13Ga0115011_106379613
14Ga0115011_109722671
15Ga0115011_110171502
16Ga0115011_111498892
17Ga0115011_113316072
18Ga0115011_113487511
19Ga0115011_114618392
20Ga0115011_115384303
21Ga0115011_115835393
22Ga0115011_116483472
23Ga0115011_116840681
24Ga0115011_118253281
25Ga0115011_118408522
26Ga0115011_119888211
27Ga0115011_121937211
28Ga0115011_122031423
29Ga0115011_122139322
30Ga0115011_122542281
31Ga0115012_102789331
32Ga0115012_104192421
33Ga0115012_104481081
34Ga0115012_104524353
35Ga0115012_105351663
36Ga0115012_106457791
37Ga0115012_106646723
38Ga0115012_109693482
39Ga0115012_110185642
40Ga0115012_112058281
41Ga0115012_112192561
42Ga0115012_114101822
43Ga0115012_114210172
44Ga0115012_117057731
45Ga0115012_118471451
46Ga0115012_119272102
47Ga0115012_119338481
48Ga0115012_120803131
49Ga0160422_103074271
50Ga0160422_106678202
51Ga0160422_107847412
52Ga0163110_104384053
53Ga0163110_106883421
54Ga0163110_110875013
55Ga0163110_113136952
56Ga0163110_116220641
57Ga0163109_102607564
58Ga0163109_106565102
59Ga0163109_113321551
60Ga0163180_100753802
61Ga0163180_101024213
62Ga0163180_101461611
63Ga0163180_102615271
64Ga0163180_103602842
65Ga0163180_105345363
66Ga0163180_105634561
67Ga0163180_106622832
68Ga0163180_107359273
69Ga0163180_107525262
70Ga0163180_108241152
71Ga0163180_109176003
72Ga0163180_110413642
73Ga0163180_113036411
74Ga0163180_115135201
75Ga0163180_117478992
76Ga0163180_117981471
77Ga0163179_102107641
78Ga0163179_107187442
79Ga0163179_109879842
80Ga0163179_113648151
81Ga0163179_116641592
82Ga0163179_116985871
83Ga0163111_103462861
84Ga0163111_106588425
85Ga0163111_109433131
86Ga0163111_118552051
87Ga0163111_120013222
88Ga0163111_123049342
89Ga0163111_124115762
90Ga0163111_127566531
91Ga0211628_10205732
92Ga0211545_105164671
93Ga0211550_101512461
94Ga0211548_100385911
95Ga0211548_104708123
96Ga0211694_104627611
97Ga0211640_105164872
98Ga0211713_103823421
99Ga0211579_103114441
100Ga0209503_100716431
101Ga0209503_106535732
102Ga0209503_106614612
103Ga0209404_101248641
104Ga0209404_105344101
105Ga0209404_110012132
106Ga0310343_101360181
107Ga0310343_103595401
108Ga0310343_114069811
109Ga0310344_112704712
110Ga0315315_111208022
111Ga0310342_1014408552
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
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5101520253035GSVERRGTGIATPSSRRRVDGVEDDAMIQHERAVKFSequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered Regions
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.15
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
95.5%4.5%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Marine
Seawater
Seawater
Marine
Surface Seawater
Seawater
Seawater
Marine
Ocean Water
46.8%4.5%20.7%14.4%8.1%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0066841_1001864733300005599MarineGSVERRGTGIATPSSRRRVDGVEDDAKIQHERAVKF*
Ga0066836_1041994533300006166MarineRGRPGSVERRGTGIATPSSRRRVDGVEVDAKIQHERAVKF*
Ga0068500_145065723300006332MarineLVDRRGTGIATPSSRRRVDGVEDDATMQRERAVKF*
Ga0111541_1050051623300008097MarineGSIERWGTDIATPSSKRRVDGVEVDTTVQHERAVKF*
Ga0103710_1016255413300009006Ocean WaterSIERGGTGIATPSSRRRVDGVKVDATIQHERAAKF*
Ga0115013_1028566723300009550MarineSVEWRGTGTATPSSRRRVDGVEVDATIQDERAVKF*
Ga0115013_1030515913300009550MarineRSRPGSVERRGTGIVTPSSRRRVDGVEDDVIIQHERAVKF*
Ga0115013_1058847613300009550MarineRPGSVERRGTGTSTPSSKRRVDGVEDAAMIQHERAVTF*
Ga0115013_1108878223300009550MarineGSVERRGTGIATPSSRRRIDGVEEDAMIRHERAVKF*
Ga0115013_1128120113300009550MarinePGSVKRRGTGIATPSSRRRVDGVEADATIQHERPVKF*
Ga0115013_1141310513300009550MarineINQCVGWRGTGTATPSSRRRVDGVEVDATIQDERAVKF*
Ga0115011_1004932353300009593MarineSVERRGTGIATPSSRRRVDGVEDDAAIQHERAVKF*
Ga0115011_1063796133300009593MarineCRPGSVERRGTGIATPSSRRRVDGVEDDAAIQHERAVKF*
Ga0115011_1097226713300009593MarineGSVERRGTGIATPSSRHRVDGVEVDATIQHERAVKF*
Ga0115011_1101715023300009593MarineGSVERQGTGIATPSSRRRIDGFEDDAMIQHERAVKI*
Ga0115011_1114988923300009593MarineRPGSVERRGTGIATPSSRRRVDGVEDDAAIQHERAVKF*
Ga0115011_1133160723300009593MarineGCPGSVERRETGIATPSSRRRVDGVEDDAAMQHERAVKF*
Ga0115011_1134875113300009593MarineMAWPSWLVERRRIGTTTLSSRRRVDGVEVDATIQRAVKF*
Ga0115011_1146183923300009593MarineWRGRPGFVERRGIGIVTPSSGPRVDGVEDDAMIQHERAANF*
Ga0115011_1153843033300009593MarineVERRGIGIVTPSSRPRVDGVEDDAMIQHERAVNF*
Ga0115011_1158353933300009593MarineSVERRGTGIATPSSRRRVDGVEDDAMIQHERAVKF*
Ga0115011_1164834723300009593MarineSVERRGTGIATPSSRRRVDGVEDDATIQDRRAVKF*
Ga0115011_1168406813300009593MarineGRPGSVERRGTGIATPSSRRRVDGVEDDVTIQRERVVKF*
Ga0115011_1182532813300009593MarineIISRRRRGHAGSVERRGTGIATPSSRRRVDGVEDDAAIQDEHAVKF*
Ga0115011_1184085223300009593MarineVERRGTGIATPSSRRRVDGVEDDAMIQHDRAVKF*
Ga0115011_1198882113300009593MarinePGSVEWRGTGIATPSSRRRVDGVEDDAMIQHERAVKL*
Ga0115011_1219372113300009593MarinePGSVERRGTGIATPSSRRRVDGVEDDATMQHERAAP*
Ga0115011_1220314233300009593MarineGSVERRGTGIATPSSRRRVDGVEDDATIQYERAVKF*
Ga0115011_1221393223300009593MarinePGSVELRGTGIATPSSRRRVDGVEDDAMIQHERAVKV*
Ga0115011_1225422813300009593MarineRPGSVERRGTGIATPSSRRRVDGVEDDAMIQHERAIKF*
Ga0115012_1027893313300009790MarineGSVEWRGTGIATPSSRRRVDGVEDDAMIQHERAVKL*
Ga0115012_1041924213300009790MarineVCGSVERRGIGIATPSSRRRVDGVEDDAMIQHERAVKF
Ga0115012_1044810813300009790MarineVTSLRWRGCPGLVERRGTGIATPSSRRCVDGVEDDAAIQHERAVKF*
Ga0115012_1045243533300009790MarineGRAGSGERRGIGIATPSSRRRVDGVEDDAMIQHERAVKF*
Ga0115012_1053516633300009790MarineGSVERRGTGIATPSSRRRIDGVEDDAMIQHERAVKF*
Ga0115012_1064577913300009790MarinePGSVERRGSDTATPSSRRRVDGVEDDAMIQHERAVKF*
Ga0115012_1066467233300009790MarineSVERRGTGIATPSSRRRVDGVEDDATIQHERAVTF*
Ga0115012_1096934823300009790MarineVERRGTGIATPSSRRRVDGVEDDAAIQHERAVKF*
Ga0115012_1101856423300009790MarineAVWKSTSVSGTGIATLSSRRRVDGVEVDATNQHERAVTP*
Ga0115012_1120582813300009790MarineRRWRGRPGSVERRGTGIATPSSRRRVDGVEDDATIHHERAVKF*
Ga0115012_1121925613300009790MarineSVEWRGTGIATPSSRRRVDGVEDDAMIQHERAVKF*
Ga0115012_1141018223300009790MarineGSIERRGTGIATPSSRRRVDGVEDDAVIQHERTVTF*
Ga0115012_1142101723300009790MarineRPGSVERRGTGIATPSSRRRVDGVEDDAMIRHERAVKL*
Ga0115012_1170577313300009790MarinePGSVERRGTGIATPSSRRRVDGVEDDAMIQHKRAVKF*
Ga0115012_1184714513300009790MarineRGRPGSVERRGTGIATPSSRRRVDGVEVAATIQNERAVKF*
Ga0115012_1192721023300009790MarineVERRGTGIATPSSRHRVDGVEDDATIQHEPAVKF*
Ga0115012_1193384813300009790MarinePGSVERRGTGITTPSSRRRVDGVEDDATIQHERAVKF*
Ga0115012_1208031313300009790MarineRGRPDSVERRGTGIATPSSRRRVDGVEDDAMIQHERAVKF*
Ga0160422_1030742713300012919SeawaterVASGSLDRVTGIATPSSRRRVDGVEDDAAIQHERAVKF*
Ga0160422_1066782023300012919SeawaterVEITVERRGTGIAAPSRRRRVDGVEDDAMIQHERAVKF*
Ga0160422_1078474123300012919SeawaterMRTGTATPSSRRRVDGMEGDATIQHERAVKFLFPHR
Ga0163110_1043840533300012928Surface SeawaterGSVERRGTGIATPSSSRRVDGVEEDAAIQHERAVKF*
Ga0163110_1068834213300012928Surface SeawaterRPGSVERRRTGIATPSSRHRVDGVEDDAMIQRERAVKF*
Ga0163110_1108750133300012928Surface SeawaterSVERRRTGIATPSSRHRVDGVEDDSMIEHERAVKF*
Ga0163110_1131369523300012928Surface SeawaterPGSVERRGTGIATPSSRRRVDGVEDDAMIQHERAVKF*
Ga0163110_1162206413300012928Surface SeawaterGSVERRGTGIATPSSRRRVDGVEVDATIQRELAVKF*
Ga0163109_1026075643300012936Surface SeawaterVERLGTGIATPSSRRRIDGVEDDAMIEHKRAVKF*
Ga0163109_1065651023300012936Surface SeawaterVERRGTGIATPSSRRRVDGVGDDATIQRERAVKF*
Ga0163109_1133215513300012936Surface SeawaterHGSVERRGTSIATPSSRRRVDGVEVDATIQHERAVKS*
Ga0163180_1007538023300012952SeawaterMTRPTCGWVERRGTGIATPSSRRRVDGVEDDATIQHERAVKF*
Ga0163180_1010242133300012952SeawaterSVERRGTGIATPSSRRRVDGVEVDAAIQRERAVKF*
Ga0163180_1014616113300012952SeawaterNQPVRRVCGSVERRGIGIATPSSRRRVDGVEDDAMIQHERAVKF*
Ga0163180_1026152713300012952SeawaterGSVERRGIGIATPSSRRRVDGVEDDDVIQHERVVKF*
Ga0163180_1036028423300012952SeawaterVERRGTGIATPSSRCRVDGVEDDAMIQHERAVKF*
Ga0163180_1053453633300012952SeawaterGPVERRGTGIATPSSRRRIDGVEVDAKIQHERAV*
Ga0163180_1056345613300012952SeawaterPGSVERRGTGIATPSSRRRVDGVEDDATIQRERAVKF*
Ga0163180_1066228323300012952SeawaterGSVERRGTGIATPSSRRRVDGVEDDAMIQHERAVKF*
Ga0163180_1073592733300012952SeawaterAGSVERRGTGTATPSNIYHEDGVEVDATIQHERAVKF*
Ga0163180_1075252623300012952SeawaterPGSVERRGTGIATPSSRHRVDGVEDDATIQHERAVNF*
Ga0163180_1082411523300012952SeawaterVERRGTGIATPSSRRRVDGVEDDAMIQHERAVKL*
Ga0163180_1091760033300012952SeawaterPGSVERRGTGIATPSSRRRVDGVEDEAMIQHERAVKF*
Ga0163180_1104136423300012952SeawaterSVERRGTGIATPSSRRRVDGVEDDATIQHERAVNF*
Ga0163180_1130364113300012952SeawaterRPGSVERRGTGIATPSSRRRVDGVEDDAMIQHERAVKF*
Ga0163180_1151352013300012952SeawaterRGRPGSVERRGTGIATPSSRRCVDGVEDDATIQHERAVKF*
Ga0163180_1174789923300012952SeawaterVERRGTGIATPSSRRRVDGVEDDAMIQHERAVKF*
Ga0163180_1179814713300012952SeawaterRPGSVERRGTGIATPSSRRRVDGVEEDAMIQHERAVKF*
Ga0163179_1021076413300012953SeawaterGRPGSVERRGTGIATPSSRRRVDGVEDETMIQHERAVKF*
Ga0163179_1071874423300012953SeawaterGSVERRGTGIATPSSRRRVDGVEDDAAIQHERAVKF*
Ga0163179_1098798423300012953SeawaterGRPGSVEWRGTGIATPSSRRRVDGVEDDAMIQHERAVKF*
Ga0163179_1136481513300012953SeawaterGRPGFVERRGIGIVTPSSRPRVDGVEDAMIQDERAVNF*
Ga0163179_1166415923300012953SeawaterAASVERRGTGIATPSSRRRVDGVEVDATIQHEGAVKL*
Ga0163179_1169858713300012953SeawaterVERRGTDIATPSSRRRVDGVEDDAAIQHERAVKF*
Ga0163111_1034628613300012954Surface SeawaterRPGSVEWRGTGIATPSSRRRVDGVEDDAMIQHERAVKF*
Ga0163111_1065884253300012954Surface SeawaterRGRAGSVERRGIGIATPSSRRRVDGVERDAMIQHERAVKF*
Ga0163111_1094331313300012954Surface SeawaterPGSLARRGTGIATPSSMRRVDGVEDDAMIQHARAVKL*
Ga0163111_1185520513300012954Surface SeawaterRGRPGSVERRGTGIATPSSRRRVDGEEVDATIQHEGAVK*
Ga0163111_1200132223300012954Surface SeawaterRPGSVERRGTGIATPSSSRRVDGVEDDAMIQHERAVKF*
Ga0163111_1230493423300012954Surface SeawaterMTLERRGPGIATPSSRRRVDGVEDDATIQHERTVKF*
Ga0163111_1241157623300012954Surface SeawaterGARGRPGSVERRGTGIATPSSRRRVDGVEDDATIQHERAVKV*
Ga0163111_1275665313300012954Surface SeawaterVISWRWRGRAGSIERRGTGIATPSSRRVDGVEDGAMIQHERAVKF*
Ga0211628_102057323300020311MarinePGSVERRGTGIATPSSRRRVDGVEDDAMIQHERAVKF
Ga0211545_1051646713300020452MarineGSVERQGTGIATPSSRRRIDGVEVDAKIQRERAVKS
Ga0211550_1015124613300020453MarineRARAGSVERRGTGIATPSSRRRVDGVEDDATMQHERTVKF
Ga0211548_1003859113300020454MarineGLVDRRGTGIATPSSRRRVDGVEDDATMQRERAVKF
Ga0211548_1047081233300020454MarineSVERRGTGIATPSSRRRVDGVEDDATIQHERAVKF
Ga0211694_1046276113300020464MarineAGSVERRGIGTATPSSRHRVDCVEVDATMQHERAVKF
Ga0211640_1051648723300020465MarineSVERRGTGIATPSSRRRVDGVEDDAAIQHERAVKF
Ga0211713_1038234213300020467MarineTSVSGARGTGIATPSSRRRVDGVEDDAMIQHERAVTF
Ga0211579_1031144413300020472MarineLGRPGSVERRGTGIATPSSRRRVDDVEDDAMIQHERAVTF
Ga0209503_1007164313300027859MarineASGARSVEWRGTGTATPSSRRRVDGVEVDATIQDERAVKF
Ga0209503_1065357323300027859MarineVWKSASASGGSVERRGTGIATPSSKRRVDGVEDDAMIQHERAVKF
Ga0209503_1066146123300027859MarineINQCVGWRGTGTATPSSRRRVDGVEVDATIQDERAVKF
Ga0209404_1012486413300027906MarinePGSVERQGTGIATPSSRRRIDGFEDDAMIQHERAVKI
Ga0209404_1053441013300027906MarineMTRPPGSVERRGTGIATPSSRRRVDGVEDDAMIQHG
Ga0209404_1100121323300027906MarineMTWPSVERRGTGIATPSSRRHVDGVQVDATIQHERAVKF
Ga0310343_1013601813300031785SeawaterSVERRGTGIATPSSRRRVDGVEDDAAIQDERAVKF
Ga0310343_1035954013300031785SeawaterISRRWRGRPGSVERRGTGITTPSSRRRVDGVAVDATIQHERAVKI
Ga0310343_1140698113300031785SeawaterPGSVERRGTGIATPSSRRRVDGVEDDAAIQDERAVKF
Ga0310344_1127047123300032006SeawaterSVERQGTGIATPSSRRRVDGVEDDAMIQHERAVKF
Ga0315315_1112080223300032073SeawaterSVERRVTGIATLSSRRRVDGVEDDAKNLHERAVKF
Ga0310342_10144085523300032820SeawaterISRRRRGRPGSLERRGTGIATPSSRHRVDGVEVDATIQHERAVKF


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