Metagenome / Metatranscriptome Family F086130

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086130
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	77 residues
Representative Sequence	VRSAAATNVTRLRVRGGDAAKLSERLLEHGIAIRPALRVAAEGAEFELFTNETILRRPVAETIEAFVKALGSV
Number of Associated Samples	95
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.20 %
% of genes from short scaffolds (< 2000 bps)	95.50 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (76.577 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (47.748 % of family members)
Environment Ontology (ENVO)	Unclassified (59.459 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (45.946 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.75% β-sheet: 16.83% Coil/Unstructured: 58.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
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SCOP family	SCOP domain	Representative PDB	TM-score
c.67.1.0: PLP-dependent transferases	d2dr1a_	2dr1	0.69
c.67.1.0: PLP-dependent transferases	d2dr1a_	2dr1	0.69
c.67.1.3: PLP-dependent transferases	d1eg5a_	1eg5	0.68
c.67.1.0: PLP-dependent transferases	d4isya1	4isy	0.68
c.67.1.3: PLP-dependent transferases	d1eg5a_	1eg5	0.68
c.67.1.0: PLP-dependent transferases	d4isya1	4isy	0.68
c.67.1.1: PLP-dependent transferases	d1jg8a_	1jg8	0.67
c.67.1.0: PLP-dependent transferases	d3dr4a1	3dr4	0.67
c.67.1.1: PLP-dependent transferases	d1jg8a_	1jg8	0.67
c.67.1.0: PLP-dependent transferases	d3dr4a1	3dr4	0.67

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF01327	Pep_deformylase	38.74
PF00551	Formyl_trans_N	2.70
PF08359	TetR_C_4	2.70
PF02265	S1-P1_nuclease	0.90
PF14294	DUF4372	0.90
PF02911	Formyl_trans_C	0.90
PF01416	PseudoU_synth_1	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0242	Peptide deformylase	Translation, ribosomal structure and biogenesis [J]	38.74
COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	Transcription [K]	2.70
COG0101	tRNA U38,U39,U40 pseudouridine synthase TruA	Translation, ribosomal structure and biogenesis [J]	0.90
COG0223	Methionyl-tRNA formyltransferase	Translation, ribosomal structure and biogenesis [J]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.58 %
Unclassified	root	N/A	23.42 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.58 %
Unclassified	root	N/A	23.42 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.58 %
Unclassified	root	N/A	23.42 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	54.95 %
Unclassified	root	N/A	23.42 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	28.83 %
Unclassified	root	N/A	23.42 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.42 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	16.22 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	6.31 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.42 %
Shewanellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae	16.22 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.41 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	3.60 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.90 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.42 %
Shewanella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella	16.22 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.41 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	3.60 %
Siccirubricoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus	0.90 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.42 %
Shewanella ulleungensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella → Shewanella ulleungensis	16.22 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.41 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	3.60 %
Siccirubricoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus	0.90 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004092\|Ga0062389_101978985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	760	Open in IMG/M
3300004268\|Ga0066398_10185471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	541	Open in IMG/M
3300005181\|Ga0066678_10540526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	774	Open in IMG/M
3300005436\|Ga0070713_100812480	Not Available	897	Open in IMG/M
3300005439\|Ga0070711_100477887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella → Shewanella ulleungensis	1024	Open in IMG/M
3300005454\|Ga0066687_10214201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1058	Open in IMG/M
3300005559\|Ga0066700_10373818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1006	Open in IMG/M
3300005764\|Ga0066903_107061579	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300006050\|Ga0075028_100996155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	521	Open in IMG/M
3300006172\|Ga0075018_10154698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella → Shewanella ulleungensis	1060	Open in IMG/M
3300006175\|Ga0070712_100237258	All Organisms → cellular organisms → Bacteria	1451	Open in IMG/M
3300006800\|Ga0066660_10668236	Not Available	859	Open in IMG/M
3300010343\|Ga0074044_10342071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	981	Open in IMG/M
3300010358\|Ga0126370_11390966	Not Available	662	Open in IMG/M
3300010360\|Ga0126372_10814443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella → Shewanella ulleungensis	927	Open in IMG/M
3300010376\|Ga0126381_102996445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	671	Open in IMG/M
3300012189\|Ga0137388_10537210	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300012189\|Ga0137388_10573234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1049	Open in IMG/M
3300012202\|Ga0137363_11356284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	600	Open in IMG/M
3300012683\|Ga0137398_10880474	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300012918\|Ga0137396_10256699	All Organisms → cellular organisms → Bacteria → Proteobacteria	1290	Open in IMG/M
3300012929\|Ga0137404_11718785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	583	Open in IMG/M
3300012971\|Ga0126369_13124262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	542	Open in IMG/M
3300015264\|Ga0137403_10803889	Not Available	795	Open in IMG/M
3300016270\|Ga0182036_10649972	Not Available	850	Open in IMG/M
3300016270\|Ga0182036_10958572	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300016270\|Ga0182036_11220731	Not Available	626	Open in IMG/M
3300016294\|Ga0182041_10096930	Not Available	2155	Open in IMG/M
3300016294\|Ga0182041_10298083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1335	Open in IMG/M
3300016319\|Ga0182033_10258405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1419	Open in IMG/M
3300016357\|Ga0182032_11485182	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300016357\|Ga0182032_12047332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	503	Open in IMG/M
3300016371\|Ga0182034_11577154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus	576	Open in IMG/M
3300016404\|Ga0182037_10916190	Not Available	761	Open in IMG/M
3300016422\|Ga0182039_10272459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1389	Open in IMG/M
3300016422\|Ga0182039_10654302	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300016445\|Ga0182038_10174594	All Organisms → cellular organisms → Bacteria → Proteobacteria	1667	Open in IMG/M
3300017955\|Ga0187817_10330530	Not Available	972	Open in IMG/M
3300020170\|Ga0179594_10375164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	540	Open in IMG/M
3300021361\|Ga0213872_10220249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella → Shewanella ulleungensis	808	Open in IMG/M
3300021362\|Ga0213882_10460213	Not Available	542	Open in IMG/M
3300021401\|Ga0210393_11200344	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300021407\|Ga0210383_10817009	Not Available	797	Open in IMG/M
3300021439\|Ga0213879_10248403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella → Shewanella ulleungensis	537	Open in IMG/M
3300021476\|Ga0187846_10204814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella → Shewanella ulleungensis	826	Open in IMG/M
3300022512\|Ga0242676_1053362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300022532\|Ga0242655_10090653	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300022714\|Ga0242671_1045161	Not Available	715	Open in IMG/M
3300022724\|Ga0242665_10314727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella → Shewanella ulleungensis	551	Open in IMG/M
3300025915\|Ga0207693_10522503	Not Available	926	Open in IMG/M
3300025929\|Ga0207664_11458033	Not Available	606	Open in IMG/M
3300027846\|Ga0209180_10732351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	535	Open in IMG/M
3300027855\|Ga0209693_10300843	Not Available	782	Open in IMG/M
3300028047\|Ga0209526_10109556	All Organisms → cellular organisms → Bacteria → Proteobacteria	1942	Open in IMG/M
3300031057\|Ga0170834_105656829	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300031446\|Ga0170820_12852152	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300031469\|Ga0170819_17478573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	516	Open in IMG/M
3300031543\|Ga0318516_10455766	All Organisms → cellular organisms → Bacteria → Proteobacteria	735	Open in IMG/M
3300031544\|Ga0318534_10129222	All Organisms → cellular organisms → Bacteria	1454	Open in IMG/M
3300031544\|Ga0318534_10626466	Not Available	610	Open in IMG/M
3300031544\|Ga0318534_10728210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella → Shewanella ulleungensis	559	Open in IMG/M
3300031545\|Ga0318541_10177043	All Organisms → cellular organisms → Bacteria	1177	Open in IMG/M
3300031546\|Ga0318538_10633060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella → Shewanella ulleungensis	580	Open in IMG/M
3300031561\|Ga0318528_10125851	All Organisms → cellular organisms → Bacteria	1357	Open in IMG/M
3300031573\|Ga0310915_10800787	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300031668\|Ga0318542_10182045	All Organisms → cellular organisms → Bacteria	1055	Open in IMG/M
3300031682\|Ga0318560_10214546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella → Shewanella ulleungensis	1030	Open in IMG/M
3300031713\|Ga0318496_10236529	All Organisms → cellular organisms → Bacteria	1006	Open in IMG/M
3300031713\|Ga0318496_10331055	Not Available	841	Open in IMG/M
3300031724\|Ga0318500_10179019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1008	Open in IMG/M
3300031744\|Ga0306918_10182403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1572	Open in IMG/M
3300031751\|Ga0318494_10528010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	688	Open in IMG/M
3300031763\|Ga0318537_10094134	All Organisms → cellular organisms → Bacteria → Proteobacteria	1107	Open in IMG/M
3300031768\|Ga0318509_10035486	All Organisms → cellular organisms → Bacteria	2466	Open in IMG/M
3300031778\|Ga0318498_10230557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella → Shewanella ulleungensis	837	Open in IMG/M
3300031782\|Ga0318552_10340808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella → Shewanella ulleungensis	763	Open in IMG/M
3300031792\|Ga0318529_10580920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella → Shewanella ulleungensis	520	Open in IMG/M
3300031795\|Ga0318557_10288903	All Organisms → cellular organisms → Bacteria → Proteobacteria	752	Open in IMG/M
3300031796\|Ga0318576_10104335	All Organisms → cellular organisms → Bacteria → Proteobacteria	1296	Open in IMG/M
3300031797\|Ga0318550_10310389	All Organisms → cellular organisms → Bacteria → Proteobacteria	765	Open in IMG/M
3300031805\|Ga0318497_10415269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	753	Open in IMG/M
3300031805\|Ga0318497_10775355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300031819\|Ga0318568_10025236	All Organisms → cellular organisms → Bacteria → Proteobacteria	3266	Open in IMG/M
3300031845\|Ga0318511_10466225	Not Available	583	Open in IMG/M
3300031845\|Ga0318511_10587589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella → Shewanella ulleungensis	519	Open in IMG/M
3300031846\|Ga0318512_10324208	All Organisms → cellular organisms → Bacteria → Proteobacteria	768	Open in IMG/M
3300031860\|Ga0318495_10499243	Not Available	531	Open in IMG/M
3300031879\|Ga0306919_10603307	Not Available	847	Open in IMG/M
3300031880\|Ga0318544_10033250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1801	Open in IMG/M
3300031893\|Ga0318536_10313854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella → Shewanella ulleungensis	795	Open in IMG/M
3300031894\|Ga0318522_10316837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	591	Open in IMG/M
3300031896\|Ga0318551_10100770	All Organisms → cellular organisms → Bacteria	1536	Open in IMG/M
3300031910\|Ga0306923_10728935	All Organisms → cellular organisms → Bacteria → Proteobacteria	1101	Open in IMG/M
3300031910\|Ga0306923_12400761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	523	Open in IMG/M
3300031912\|Ga0306921_12466038	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300031942\|Ga0310916_11291638	Not Available	601	Open in IMG/M
3300031946\|Ga0310910_10431866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1044	Open in IMG/M
3300031947\|Ga0310909_10278003	All Organisms → cellular organisms → Bacteria	1401	Open in IMG/M
3300031947\|Ga0310909_10545035	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300031954\|Ga0306926_12840137	Not Available	522	Open in IMG/M
3300032042\|Ga0318545_10160714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella → Shewanella ulleungensis	800	Open in IMG/M
3300032044\|Ga0318558_10388616	Not Available	694	Open in IMG/M
3300032055\|Ga0318575_10215601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella → Shewanella ulleungensis	965	Open in IMG/M
3300032055\|Ga0318575_10237805	Not Available	918	Open in IMG/M
3300032055\|Ga0318575_10308539	Not Available	801	Open in IMG/M
3300032060\|Ga0318505_10000735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	8252	Open in IMG/M
3300032063\|Ga0318504_10377328	Not Available	675	Open in IMG/M
3300032091\|Ga0318577_10119988	All Organisms → cellular organisms → Bacteria	1241	Open in IMG/M
3300032782\|Ga0335082_11646384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella → Shewanella ulleungensis	515	Open in IMG/M
3300033289\|Ga0310914_10088556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	2639	Open in IMG/M
3300033289\|Ga0310914_10919363	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.10%
Host-Associated	Host-Associated	0.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.50%
Aquatic	Environmental → Aquatic	3.60%
Plants	Host-Associated → Plants	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.69%
Freshwater	Environmental → Aquatic → Freshwater	1.80%
Sediment	Environmental → Aquatic → Sediment	1.80%
Cave	Environmental → Terrestrial → Cave	0.90%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.78%
Loam	Environmental → Terrestrial → Soil → Loam	8.11%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.80%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.90%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	67.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.80%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.80%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.90%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.90%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.90%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	47.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.12%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.11%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.60%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.60%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.70%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.80%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.90%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.90%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.90%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.90%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.90%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021361	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2	Host-Associated	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300022512	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022714	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062389_1019789851	3300004092	Bog Forest Soil	ATNVTRLRIRGGDACGLPERLIARGVSIRPALQCAAEGADFELFTNETILRRPAAETIGIFLEALGAA*
Ga0066398_101854711	3300004268	Tropical Forest Soil	GTNVTRLRVFRHDATTLPERLLARGIAIRPALYASPEGAEFELLTNETILRRPMNEIVDAFTEALKS*
Ga0066678_105405261	3300005181	Soil	RRPEGGTNVTRLRVFGDDAASLPERLLARGIAIRPALDASPEGAEFELFTNETILRCPPHEIIEIFVEAL*
Ga0070713_1008124801	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	TGTNVARLRVLGADAESLPERLLARGIAIRPALHASPERAEFELFTNETILRRPANQIVETFIEALEC*
Ga0070711_1004778871	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	SPAATNVTRLFVSGRDAVALPERLLPHGIAIRPVLRSSPQKAEFELFTNETLLRRPIGEIVEIFAEAL*
Ga0066687_102142011	3300005454	Soil	TRLRVFGAGAEGLPERLLARGIAIRPALHASPEGAEFELFTNETILRRPANEIAEIFIGALKAPLRP*
Ga0066700_103738182	3300005559	Soil	AATNVTRLRVCGGDAARLPERLLASDVAIRPALRSTAEGVEFELITNETILRRPVAETIEIFLEALAST*
Ga0066903_1070615792	3300005764	Tropical Forest Soil	PPTATNVTRLRVRGCGAADLPERLLAYGIAIRPARNASVDAAEFELFTNETLLRRPTPVVIDAFLDALRPA*
Ga0075028_1009961552	3300006050	Watersheds	GAATNVTRLRVHSSGAANLPEGLLAYGITIRAPFHTSAEGAEFELFTNETILRRPTAETIEAFVKALKSV*
Ga0075018_101546982	3300006172	Watersheds	SGAATNVTRLRVRSSGAANLPERLLAYGIAIRAPFHTSAEGAEFELFTNETILRRPTAETIEAFVKALKSV*
Ga0070712_1002372581	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	AAETVFEALHRHPGCEVRRPPAPTNVTRLRVFGTDAATFPERLLARGIAIRPALTVSPADAEFELFTNETILRCPTEEIVEIFVDALGSQRSPP*
Ga0066660_106682361	3300006800	Soil	RAAAATNVTRLQVFRTDVEGLPDRLLKHGIAIRPALQASPECAVFELITNETILRRPADEIVETFIGALGS*
Ga0074044_103420711	3300010343	Bog Forest Soil	AATNVTRLRIRGGDASELPERLLARGVSIRPALQCAAEGAEFELFTNETILRRPAAETIGIFLEALGAA*
Ga0126370_113909662	3300010358	Tropical Forest Soil	LRQHPACEVRRAAAATNVARLRVFGSGSTKLPERLLAHGIAIRPALHASPEGAEFELFTNETILRRPTEEIVNIFANALGSLPARQY*
Ga0126372_108144431	3300010360	Tropical Forest Soil	CEIVRSGAATNVTRLRVRNSSAADLPERLLASGIAIRSPFHTSAEGAAFELFTNETILRRPTAETIEAFFKALKSV*
Ga0126381_1029964451	3300010376	Tropical Forest Soil	KHPGCEVLRPAAATNVTRLRVSGPCAATLPERLLGRGIAIRPAVRLSDERAEFELFTNETILRRPIERTVEAFVDSLGSL*
Ga0137388_105372103	3300012189	Vadose Zone Soil	TNVTRLCVSGRDAAALSERLLTRGIVIRPSLHSSPKGAEFELFTNETILRRPIGEIVEIFAEAL*
Ga0137388_105732342	3300012189	Vadose Zone Soil	SVATNVAQLSAHGSDAAWLPQRLLTAGISIRPALHSAADGALFELITNETILRRPVAETIDIFLKALRSV*
Ga0137363_113562842	3300012202	Vadose Zone Soil	GATNVARLLVSGRDTAELPQRLLARGIAIRPPLHSSSQGAEFELFTNETILRRPVAETIAIFAGVL*
Ga0137398_108804741	3300012683	Vadose Zone Soil	AVGEHERWIVPRSSAATSVTRLRVCGGDAARLPERLLASEVAIRPALRSTAEGAEFELITNETILRRPVAETIEIFLEALAST*
Ga0137396_102566993	3300012918	Vadose Zone Soil	RLRVCGGDAARLPERLLASGVAIRPALRSAADGAEFELITNETILRRPVAETIEIFLGALAHPA*
Ga0137404_117187851	3300012929	Vadose Zone Soil	VARLRVCGGDAAGLPERLLASGVAIRPALRSAADGAEFELITNETILRRSVAETTEIFLGALASA*
Ga0126369_131242622	3300012971	Tropical Forest Soil	EHERCTVPRSSAATNVTRLRICGGDTARLPERLLASGVAIRPAQRSTADGAEFELITNETILRRPVPETIEIFFEALTSI*
Ga0137403_108038891	3300015264	Vadose Zone Soil	HKHPGCEVLRSPTATNVTRLRICGRDAANLPERLRRQGIAIRPALRASSKEAEFELFTNETILRRPIAEIIAIFLEALGPASSPQY*
Ga0182036_106499722	3300016270	Soil	VWRPAAETNVTRLRVLGSDAPSLPERLLVRGIAIRPALRTGPEGAEFELITNETILRRPANEIVEIFIEALGSQPARQH
Ga0182036_109585721	3300016270	Soil	SASGTNVARLHVHRGDAATLPERLLARGVSIRPALHSSSDGAEFELYTNETILRRPTAEIIEIFVAALGSG
Ga0182036_112207312	3300016270	Soil	PAAATNVTRLRVSGPRAAALPERLLARGVAIRPAIQVSDERAEFELFTNETILRRPIERTVEAFLDSLSLV
Ga0182041_100969301	3300016294	Soil	RCEILRSAAATNVARLRVRGGAAADLSKRLLAEGIAIRSPLYVSAEGAEFELFTNEAILRRPIAETTELFVKALRSL
Ga0182041_102980833	3300016294	Soil	SAAATNVARLRVRGCDAARLPERLLAHGVAIRSALYASSEGAEFELFTNETILRRPADETIAAFVEALGSV
Ga0182033_102584051	3300016319	Soil	RSASGTNVARLHVHRGDAATLPERLLARGVSIRPALRSSADDAEFELYTNETILRRPTGEIIEIFATALGSG
Ga0182032_114851821	3300016357	Soil	RRCEILRSAAATNVARLRVRGGAAADLPKRLLAEGIAIRSPLYVSAEGAEFELFTNEAILRRPIAETTELFLKALRSL
Ga0182032_120473322	3300016357	Soil	HRRCEILRSAAATNVARLRVRGGAAADLSKRLLAEGIAIRSPLYVSAEGAEFELFTNETILRRPAAETTELFVKALGSL
Ga0182034_115771541	3300016371	Soil	GCEVLRSTAATNVTRLRVSGRCAATLPKRLLARGVEARSAIRSSDERAEFELFTNETILRRPVGETVDAFVNGLGFI
Ga0182037_109161902	3300016404	Soil	LEAILRRDGCEVRRPAATTNVTRLRVLGSDAPSLPERLLVRGIAIRPALRTGPEGAEFELITNETILRRPANEIVEIFIEALGSQPARQH
Ga0182039_102724593	3300016422	Soil	FEALLRRDGCEVRRPAAATNVARLRVSGRDASSLPERLLAHGIAIRPALRTGPQDAEFELITNETILRRPANEIVEIFIEALGSRPAHQH
Ga0182039_106543022	3300016422	Soil	RCEILRSAAATNVARLRVRGGAAADLPKRLLAEGIAIRSPLYVSAEGAEFELFTNEAILRRPIAETTELFVKALRSL
Ga0182038_101745943	3300016445	Soil	HGSCEIVRSATATNVTRLRIRGRDAAGLPERLLEHGVAIRSPLRASAEGAEFELFTNETILRRPATETIEAFVKALGSE
Ga0187817_103305301	3300017955	Freshwater Sediment	REHGRCEILRSAAATNVTRLRILRGDASRLPERLLPRGVSIRPALQSTAEGAEFELFTNETILRRPAAETIGIFLEALGAA
Ga0179594_103751642	3300020170	Vadose Zone Soil	SSAATNVTRLRVCGGDAARLPERLLASGVAIRPALRSAADGAEFELITNETILRRPVAETIEIFLGALAHPA
Ga0213872_102202491	3300021361	Rhizosphere	TRLRVRGSDAATLPERLLAGGVAIRTALRSSAEGAEFELVTNETILRRPIAETIEIFAEALAFG
Ga0213882_104602132	3300021362	Exposed Rock	TRLRVFGADMASLPERLLARGIAIRPALQVTREGAEFELFTNETILRRPAGEIVEMFMESLGPGPAPQY
Ga0210393_112003442	3300021401	Soil	RLRVRSSGAANLPERLLAYGIAIRAPFHTSAEGAEFELFTNETILRRPTAETIEAFVKALKSV
Ga0210383_108170092	3300021407	Soil	RRHPGCEVRRPESGTNVTRLRVFGADAEGLPERLLACGIAIRPALHVSPEGAEFELFTNETILRRPADEIAEMFVETLES
Ga0213879_102484031	3300021439	Bulk Soil	CEIVRSAAATNVTRLRVRGRDAATLPEQLLAGGVAIRTALRSSAEGAEFELVTNETILRRPIAETIEIFDEALAFG
Ga0187846_102048142	3300021476	Biofilm	HGRCEIVRSATATNVTRLRVRGGSAASLPERLLAHGIAIRSARCASTEAAEFELFTNETILRRPAAVTIEAFVKALGSG
Ga0242676_10533621	3300022512	Soil	AAETLLQVLRRHPGCEVRRPESGTNVTRLRVFGADAEGLPERLLACGIAIRPALHVSPEGAEFELFTNETILRRPADQIAEMFVETLES
Ga0242655_100906531	3300022532	Soil	GTNVARLRVFGNDAVGLPERLLARGITIRPALHASPEDAEFELFTNETILCRSTDEIVGIFFEAL
Ga0242671_10451612	3300022714	Soil	ERAAAAAETLLQVLRRHPGCEVRRPESGTNVTRLRVFGADAEGLPERLLACGIAIRPALHVSPEGAEFELFTNETILRRPADQIAEMFVETLES
Ga0242665_103147272	3300022724	Soil	CEIPRSPAATNVTRLFVSGRDAVALPERLLPRGIAIRPVLRSSPQKAEFELFTNETLLRRPIGEIVEIFAEAL
Ga0207693_105225031	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	AAETVFEALHRHPGCEVRRPPAPTNVTRLRVFGTDAATFPERLLARGIAIRPALTVSPADAEFELFTNETILRCPTEEIVEIFVDALGSQRSPP
Ga0207664_114580331	3300025929	Agricultural Soil	RQSGCEVERPATATNVARLRVLGPDAESLPERLLARGIAIRPALHASREGAEFELFTNETILRRPANEILEIFVEALES
Ga0209180_107323512	3300027846	Vadose Zone Soil	NFPNCEVPRSPAATNVTRLCVSGRDAVALPERLLGRGIAIRPALRSSPQRAEFELFTNETILRRPIGEIVEIFAEAL
Ga0209693_103008431	3300027855	Soil	AAAETLLQVLRRHPGCEVRRPESGTNVTRLRVFGADAEGLPERLLACGIAIRPALHVSPEGAEFELFTNETILRRPADEIAEMFVETLES
Ga0209526_101095564	3300028047	Forest Soil	SSAATNVTRLRVCGGDAARLPERLLALGVAIRPALRSVADGAEFELITNETILRRPVAETIEIFLEALAST
Ga0170834_1056568291	3300031057	Forest Soil	TNVTHLRVLGDDAVSLPERLLARGIAIRPALHASPEGAEFELFTNETILRRPPQEIIKIFAEAL
Ga0170820_128521523	3300031446	Forest Soil	CEVRRPEGGTNVTHLRVLGDDAVSLSERLLARGIAIRPALHASPEGAEFELFTNETILRRPPQEIIKIFAEACEHPRKRVDGAGVKAKV
Ga0170819_174785731	3300031469	Forest Soil	TRLRVCGGDAARLPERLLESEVAIRPALRSTAEGAEFELITNETTLRRPVAETIEIFLEALTST
Ga0318516_104557661	3300031543	Soil	AADNLFGALREHGRCEILRSAAATNVSRLHVRGSGAADLPERLLEDGIAVRPALHASAEGAEFELFTNETILRRPTEETIEALVKALGSR
Ga0318534_101292221	3300031544	Soil	VEAADNLFVALREHRRCEILRSAAATNVARLRVRGGAAADLPKRLLAEGIAIRSPLYVSAEGAEFELFTNEAILRRPIAETTELFVKALRSL
Ga0318534_106264661	3300031544	Soil	VLRSAAATNVTRLNVLGSDAAALPERLLARGIAIRRALRSSPEGAEFELVTNETILRRPIAEIIEAFVEALRPA
Ga0318534_107282102	3300031544	Soil	HGSCEIVRSATATNVTRLRVRGADAARLPERLLEHGVAIRPALHAAAEGAEFELFTNETILRRPVAETIKAFVKALGSV
Ga0318541_101770431	3300031545	Soil	VEAADNLFVALREHRRCEILRSAAATNVARLRVRGGAAADLSKRLLAEGIAIRSPLYVSAEGAEFELFTNETILRRPAAETTELFVKALGSL
Ga0318538_106330602	3300031546	Soil	VRSAAATNVTRLRVRGGDAARLPERLLEHGVAIRPASHTAAGEAEFELFTNETILRRPAAETIGAFVKALGSV
Ga0318528_101258511	3300031561	Soil	FGRAVEAADNLFAALREHRRCEILRSAAATNVARLRVRGGAAADLPKRLLAEGIAIRSPLYVSAEGAEFELFTNEAILRRPIAETTELFVKALRSL
Ga0310915_108007872	3300031573	Soil	TRLRVLGCGAAKLPERLFAHGIAIRAALETSEDGAEFELVTNETILRRPVADTIEAFVNALGSV
Ga0318542_101820452	3300031668	Soil	VEAADNLFAALREHGRCEILRSAAATNVARLRVRGGAAADLPKRLLAEGIAIRSPLYVSAEGAEFELFTNEAILRRPIAETTELFVKALRSL
Ga0318560_102145461	3300031682	Soil	RSAAATNVTRLRVRGGDAARLPERLLEHGFAIRPALHTAAGVAEFELFTNETILRRPAVETIEAFVKALGSV
Ga0318496_102365292	3300031713	Soil	LREHGRCEILRSAAATNVARLRVRGGAAADLPKRLLAEGIAIRSPLYVSAEGAEFELFTNEAILRRPIAETTELFVKALRSL
Ga0318496_103310552	3300031713	Soil	GYEVLRPAAATNVTRLRVSGPRAAALPERLLARGVAIRPAIQVSDERAEFELFTNETILRRPIERTVEAFLDSLSLV
Ga0318500_101790193	3300031724	Soil	HDNCEVLRSSAATNVTRLRVTDRDAAALPERLLTGGITIRSPLRASPTGAEFELFTNETILRRPIAEIIATFAAAL
Ga0306918_101824031	3300031744	Soil	LAKYQNCEVLRSPTATNVTRLRVTDRGAAALPERLLTGGITIRSPLRASPTGAEFELFTNETILRRPIAEIIATFAAAL
Ga0318494_105280101	3300031751	Soil	KHGSCEIVRSATATNVTRLRIRGRDAAGLPERLLEHGVAIRSPLRASAEGAEFELFTNETILRRPTTETIEAFVKALGSE
Ga0318537_100941341	3300031763	Soil	ATNVSRLHVRGSGAADLPERLLEDGIAVRPALHASAEGAEFELFTNETILRRPTEETIEAFVKALGSR
Ga0318509_100354864	3300031768	Soil	VRSATATNVTRLRVRGADAARLPERLLEHGVAIRPALHAAAEGAEFELFTNETILRRPVAETIKAFVKALGSV
Ga0318498_102305572	3300031778	Soil	ILRSAAATNVSRLHVRGSGAADLPERLLEDGIAVRPALHASAEGAEFELFTNETILRRPAAETIEAFVEALGSE
Ga0318552_103408081	3300031782	Soil	CEIVRPAAATNVTRLRVRGGDAARLPERLLEHGVAIRPALHTAAGAAEFELFTNETILRRPLAETIGAFVKALGSV
Ga0318529_105809202	3300031792	Soil	REHGRCEIVRPAAATNVTRLRVRGGDAARLPERLLEHGVAIRPALHTAAGAAEFELFTNETILRRPLAETIGAFVKALGSV
Ga0318557_102889031	3300031795	Soil	GLRSAAATNVTRLRVSGPCAATLPERLFARGVAIRPAVRISDERAEFELFTNETILRRPVGETVDAFVNGLGFI
Ga0318576_101043353	3300031796	Soil	IVRSAAATNVTRLRVRGGDAAKLSERLLEHGIAIRPALRVAAEGAEFELFTNETILRRPVAETIEAFVKALGSV
Ga0318550_103103892	3300031797	Soil	GERFGRAAQAADNLFGALREHGRCEILRSAAATNVSRLHVRGSGAADLPERLLEDGIAVRPALHASAEGAEFELFTNETILRRPTEETIEAFVKALGSR
Ga0318497_104152691	3300031805	Soil	CQIVRAPAATKVARLRVRGCGAAYLPKRLLTHGVAIRSALNASVDAAEFELFTNETLLRRPTPEVIDAFLDALGPA
Ga0318497_107753551	3300031805	Soil	RNHETCQVLRSAAATNVTRLNVLGSDAAALPERLLARGIAIRRALRSSPEGAEFELVTNETILRRPIAEIIEAFVEALRPA
Ga0318568_100252362	3300031819	Soil	VRSAAATNVTRLRVRGGDAAKLSERLLEHGIAIRPALRVAAEGAEFELFTNETILRRPVAETIEAFVKALGSV
Ga0318511_104662251	3300031845	Soil	RPATATNVTRLRVFGADAESLPERLLARGIAIRPALHASRVGAEFELFTNETILRRPVNEILEIFVEALESYPARQY
Ga0318511_105875891	3300031845	Soil	CEIVRSAAATNVTRLRLRGGDAARLPERLFEHGVAIRPALHTAAGAAEFELFTNETILRRPAAETIEAFVKALGSV
Ga0318512_103242081	3300031846	Soil	DNLFGALREHGRCEILRSAAATNVSRLHVRGSGAADLPERLLEDGIAVRPALHASAEGAEFELFTNETILRRPTEETIEAFVKALGSR
Ga0318495_104992431	3300031860	Soil	EVLRSAAATNVTRLRVSGPCAATLPERLFARGVAIRPAVRISDERAEFELFTNETILRRPVGETVDAFVNGLGFI
Ga0306919_106033072	3300031879	Soil	GCEVRRPAAATNVARLRVSGRDASSLPERLLAHGIAIRPALRTGPQDAEFELITNETILRRPANEIVEIFIEALGSRPAHQH
Ga0318544_100332501	3300031880	Soil	YQNCEVLRSPTATNVTRLRVTDRGAAALPERLLTGGITIRSPLRASPTGAEFELFTNETILRRPIAEIIATFAAAL
Ga0318536_103138542	3300031893	Soil	ALRRNERCQMVRPPAATNVARLRVRGCGAADLPKRLLAHGVAIRPALDASVDAAEFELFTNETILRRPTPEVIDAFLDALRPA
Ga0318522_103168371	3300031894	Soil	LWDALAKYQNCEVLRSPTATNVTRLRVTDRGAAALPERLLTGGITIRSPLRASPTGAEFELFTNETILRRPIAEIIATFAAAL
Ga0318551_101007701	3300031896	Soil	NLFAALREHGRCEILRSAAATNVARLRVRGGAAADLPKRLLAEGIAIRSPLYVSAEGAEFELFTNETILRRPIAETTELFVKALRSL
Ga0306923_107289351	3300031910	Soil	AVAAADELFAALRRRERCQIVRAPAATNVARLRVRGCGAAYLPKRLLTHGVAIRSALNASVDAAEFELFTNETLLRRPTPEVIDAFLDALGPA
Ga0306923_124007612	3300031910	Soil	RQSDCEVERPATATNVTRLRVFGADAESLPERLLARGIAIRPALHASRVGAEFELFTNETILRRPVNEILEIFVEALESYPARQY
Ga0306921_124660381	3300031912	Soil	GTNVARLHVHRGDAATLPERLLARGVSIRPALHSSSDGAEFELYTNETILRRPTAEIIEIFVAALGPADRQFVARR
Ga0310916_112916382	3300031942	Soil	ILRRDGCEVRRPAATTNVTRLRVLGSDAPSLPERLLVRGIAIRPALRTGPEGAEFELITNETILRRPANEIVEIFIEALGSQPARQH
Ga0310910_104318663	3300031946	Soil	TNVTRLNVLGSDAAALPERLLARGIAIRRALRSSPEGAEFELVTNETILRRPIAEIIEAFVEALRPA
Ga0310909_102780031	3300031947	Soil	RRSERCRIVRAPAATNVARLRVRGCGAADLPKRLLTHGVKIRSALSASVDAAEFELFTNETLLRRPTPEVIDAFLDALGPA
Ga0310909_105450352	3300031947	Soil	GTNVARLHVHRGDAATLPERLLARGVSIRPALRSSADDAEFELYTNETILRRPTGEIIEIFATALGSG
Ga0306926_128401371	3300031954	Soil	CDLPRSPRATNVAHLLVSGRDAAALPQRLLAHGIAIRPPLHSSSEGAEFELFTNETILRRPIAETIAIFVEAL
Ga0318545_101607142	3300032042	Soil	HGRCEILRSAAATNVARLRVRGGAAADLPKRLLAEGIAIRSPLYVSAEGAEFELFTNEAILRRPIAETTELFVKALRSL
Ga0318558_103886162	3300032044	Soil	LWDALAKYQNCEVLRSPTATNVTRLRVTDRGAAALPERLLTGGIIIRSPLRASPTGAEFELFTNETILRRPIAEIIATFAAAL
Ga0318575_102156011	3300032055	Soil	TNVKRLRVRGADAARLPERLLEHGVAIRPALHAAAEGAEFELFTNETILRRPVAETIKAFVKALGSV
Ga0318575_102378051	3300032055	Soil	DALAKYQNCEVLRSPTATNVTRLRVTDRGAAALPERLLTGGITIRSPLRASPTGAEFELFTNETILRRPIAEIIATFAAAL
Ga0318575_103085391	3300032055	Soil	SAAATNVTRLNVLGSDAAALPERLLARGIAIRRALRSSPEGAEFELVTNETILRRPIAEIIEAFVKALRPA
Ga0318505_1000073510	3300032060	Soil	RSAAATNVTRLRVSGPCAATLPERLFARGVAIRPAVRISDERAEFELFTNETILRRPVGETVDAFVNGLGFI
Ga0318504_103773282	3300032063	Soil	AAATNVARLRVSGRDAASLPERLLAHGIAIRPALRTGPQDAEFELITNETILRRPANEIVEIFIEALGSRPAHQH
Ga0318577_101199881	3300032091	Soil	VEAADNLFAALREHGRCEILRSAAATNVARLRVRGGAAADLPKRLLAEGIAIRSPLYVSAEGAEFELFTNETILRRPIAETTELFVKALRSL
Ga0335082_116463842	3300032782	Soil	SERFGCAVKAAETLFRAIVEREDCQILRSSAATNVMRLRVYGGDAAGLPERLLASGVSIRPALHSTDDGALFELITNETILRRPLAETIEIFLRAL
Ga0310914_100885561	3300033289	Soil	ATNVTRLRVTDRGAAALPERLLTGGITIRSPLRASPTGAEFELFTNETILRRPIAEIIAAFAAAL
Ga0310914_109193632	3300033289	Soil	CCEILRSAAATNVTRLRVRGCGAAALPERLLAHGITIRSALDASAEGAEFELFTNETILRRPIAEVIDTFLDTLGPA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086130

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences