Metagenome / Metatranscriptome Family F086129

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086129
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	67 residues
Representative Sequence	MDILIRLARTGLRRGIRYGSRRWLITGITAGVLALVQRVLTEPPKTVYSTELKPGERLEIRTIPPNP
Number of Associated Samples	93
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.68 %
% of genes near scaffold ends (potentially truncated)	25.23 %
% of genes from short scaffolds (< 2000 bps)	84.68 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (67.568 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (17.117 % of family members)
Environment Ontology (ENVO)	Unclassified (25.225 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.450 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 40.30% β-sheet: 16.42% Coil/Unstructured: 43.28%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF02597	ThiS	43.24
PF02113	Peptidase_S13	17.12
PF01171	ATP_bind_3	9.91
PF07332	Phage_holin_3_6	3.60
PF14801	GCD14_N	1.80
PF13365	Trypsin_2	1.80
PF10442	FIST_C	0.90
PF02817	E3_binding	0.90
PF13607	Succ_CoA_lig	0.90
PF13377	Peripla_BP_3	0.90
PF01416	PseudoU_synth_1	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG1977	Molybdopterin synthase sulfur carrier subunit MoaD	Coenzyme transport and metabolism [H]	43.24
COG2104	Sulfur carrier protein ThiS (thiamine biosynthesis)	Coenzyme transport and metabolism [H]	43.24
COG2027	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	17.12
COG0037	tRNA(Ile)-lysidine synthase TilS/MesJ	Translation, ribosomal structure and biogenesis [J]	9.91
COG0301	Adenylyl- and sulfurtransferase ThiI (thiamine and tRNA 4-thiouridine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	9.91
COG0482	tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain	Translation, ribosomal structure and biogenesis [J]	9.91
COG0519	GMP synthase, PP-ATPase domain/subunit	Nucleotide transport and metabolism [F]	9.91
COG0603	7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	9.91
COG1606	ATP-utilizing enzyme, PP-loop superfamily	General function prediction only [R]	9.91
COG0101	tRNA U38,U39,U40 pseudouridine synthase TruA	Translation, ribosomal structure and biogenesis [J]	0.90
COG0508	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component	Energy production and conversion [C]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.57 %
Unclassified	root	N/A	32.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.57 %
Unclassified	root	N/A	32.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.57 %
Unclassified	root	N/A	32.43 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	58.56 %
Unclassified	root	N/A	32.43 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	58.56 %
Unclassified	root	N/A	32.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.43 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	27.93 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	5.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.43 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	25.23 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	4.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.43 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	21.62 %
Actinobacteria bacterium IMCC26256	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26256	3.60 %
Microthrixaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae	2.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.43 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	21.62 %
Actinobacteria bacterium IMCC26256	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26256	3.60 %
Candidatus Microthrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix	2.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.43 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	21.62 %
Actinobacteria bacterium IMCC26256	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26256	3.60 %
Candidatus Microthrix parvicella	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	2.70 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10256953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	866	Open in IMG/M
3300004633\|Ga0066395_10046157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1906	Open in IMG/M
3300005167\|Ga0066672_10369866	Not Available	937	Open in IMG/M
3300005168\|Ga0066809_10049681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	937	Open in IMG/M
3300005172\|Ga0066683_10181645	Not Available	1297	Open in IMG/M
3300005179\|Ga0066684_10166060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1410	Open in IMG/M
3300005332\|Ga0066388_100000626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	17463	Open in IMG/M
3300005332\|Ga0066388_100246991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2422	Open in IMG/M
3300005332\|Ga0066388_101028140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1384	Open in IMG/M
3300005434\|Ga0070709_11431623	Not Available	560	Open in IMG/M
3300005436\|Ga0070713_100730955	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300005436\|Ga0070713_101108453	Not Available	765	Open in IMG/M
3300005440\|Ga0070705_101909060	Not Available	505	Open in IMG/M
3300005445\|Ga0070708_100058617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	3431	Open in IMG/M
3300005468\|Ga0070707_100572363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1092	Open in IMG/M
3300005549\|Ga0070704_101871146	Not Available	556	Open in IMG/M
3300005554\|Ga0066661_10081801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1904	Open in IMG/M
3300005556\|Ga0066707_10211379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1255	Open in IMG/M
3300005559\|Ga0066700_10154617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1557	Open in IMG/M
3300005560\|Ga0066670_10142997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1389	Open in IMG/M
3300005586\|Ga0066691_10285103	Not Available	973	Open in IMG/M
3300005713\|Ga0066905_100017719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	3679	Open in IMG/M
3300005764\|Ga0066903_100091150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	4053	Open in IMG/M
3300005981\|Ga0081538_10264050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	648	Open in IMG/M
3300006046\|Ga0066652_100485761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1144	Open in IMG/M
3300006172\|Ga0075018_10181157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	989	Open in IMG/M
3300006573\|Ga0074055_11140861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	648	Open in IMG/M
3300006575\|Ga0074053_11798123	Not Available	860	Open in IMG/M
3300006581\|Ga0074048_10046692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	977	Open in IMG/M
3300006797\|Ga0066659_11670567	Not Available	536	Open in IMG/M
3300006844\|Ga0075428_100108318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	3028	Open in IMG/M
3300006844\|Ga0075428_100190609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	2217	Open in IMG/M
3300006845\|Ga0075421_100617399	All Organisms → cellular organisms → Bacteria	1271	Open in IMG/M
3300006845\|Ga0075421_101345823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	788	Open in IMG/M
3300006846\|Ga0075430_100624790	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300006853\|Ga0075420_100420625	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300006853\|Ga0075420_100422726	All Organisms → cellular organisms → Bacteria	1152	Open in IMG/M
3300006853\|Ga0075420_100911078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	756	Open in IMG/M
3300006880\|Ga0075429_100153892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2014	Open in IMG/M
3300006953\|Ga0074063_13345860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1009	Open in IMG/M
3300006969\|Ga0075419_11453029	Not Available	513	Open in IMG/M
3300009012\|Ga0066710_104564854	Not Available	517	Open in IMG/M
3300009094\|Ga0111539_10431420	Not Available	1534	Open in IMG/M
3300009094\|Ga0111539_13513931	Not Available	503	Open in IMG/M
3300009789\|Ga0126307_10013952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5920	Open in IMG/M
3300009789\|Ga0126307_10088197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2451	Open in IMG/M
3300009792\|Ga0126374_10243018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1170	Open in IMG/M
3300009840\|Ga0126313_10005210	Not Available	7737	Open in IMG/M
3300010036\|Ga0126305_10241661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1158	Open in IMG/M
3300010036\|Ga0126305_10446813	Not Available	857	Open in IMG/M
3300010037\|Ga0126304_10074227	Not Available	2110	Open in IMG/M
3300010037\|Ga0126304_10260853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1142	Open in IMG/M
3300010041\|Ga0126312_10574022	Not Available	810	Open in IMG/M
3300010043\|Ga0126380_10488708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	941	Open in IMG/M
3300010046\|Ga0126384_11343840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	664	Open in IMG/M
3300010166\|Ga0126306_10028125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3778	Open in IMG/M
3300010166\|Ga0126306_11136384	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300010333\|Ga0134080_10483824	Not Available	586	Open in IMG/M
3300010358\|Ga0126370_11873358	Not Available	582	Open in IMG/M
3300010362\|Ga0126377_10326935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1522	Open in IMG/M
3300010398\|Ga0126383_11218720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	842	Open in IMG/M
3300012021\|Ga0120192_10087277	Not Available	614	Open in IMG/M
3300012199\|Ga0137383_10405021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	999	Open in IMG/M
3300012200\|Ga0137382_10213444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1329	Open in IMG/M
3300012201\|Ga0137365_10265761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1274	Open in IMG/M
3300012204\|Ga0137374_10024958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6677	Open in IMG/M
3300012204\|Ga0137374_10090209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26256	2930	Open in IMG/M
3300012204\|Ga0137374_10870549	Not Available	664	Open in IMG/M
3300012206\|Ga0137380_10754448	Not Available	842	Open in IMG/M
3300012209\|Ga0137379_10867935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	807	Open in IMG/M
3300012210\|Ga0137378_11368114	Not Available	622	Open in IMG/M
3300012285\|Ga0137370_10467818	Not Available	769	Open in IMG/M
3300012350\|Ga0137372_10005113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	12791	Open in IMG/M
3300012350\|Ga0137372_10081298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26256	2756	Open in IMG/M
3300012356\|Ga0137371_10591641	Not Available	853	Open in IMG/M
3300012357\|Ga0137384_10163902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1860	Open in IMG/M
3300012359\|Ga0137385_10407689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1158	Open in IMG/M
3300012532\|Ga0137373_10721755	Not Available	742	Open in IMG/M
3300012925\|Ga0137419_10349704	All Organisms → cellular organisms → Bacteria	1143	Open in IMG/M
3300012986\|Ga0164304_10487605	Not Available	897	Open in IMG/M
3300014487\|Ga0182000_10691249	Not Available	503	Open in IMG/M
3300015241\|Ga0137418_10233886	All Organisms → cellular organisms → Bacteria	1569	Open in IMG/M
3300018078\|Ga0184612_10227839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	965	Open in IMG/M
3300018081\|Ga0184625_10115570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1392	Open in IMG/M
3300018431\|Ga0066655_10226038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1177	Open in IMG/M
3300018431\|Ga0066655_11407918	Not Available	506	Open in IMG/M
3300018433\|Ga0066667_10979028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	729	Open in IMG/M
3300018465\|Ga0190269_11555027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	548	Open in IMG/M
3300018469\|Ga0190270_10336736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26256	1364	Open in IMG/M
3300018482\|Ga0066669_10404586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1157	Open in IMG/M
3300020003\|Ga0193739_1040740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1201	Open in IMG/M
3300021073\|Ga0210378_10058362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1518	Open in IMG/M
3300022694\|Ga0222623_10193038	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300025910\|Ga0207684_10156688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26256	1960	Open in IMG/M
3300025910\|Ga0207684_10240586	Not Available	1561	Open in IMG/M
3300025928\|Ga0207700_10268069	Not Available	1465	Open in IMG/M
3300025928\|Ga0207700_10890643	Not Available	796	Open in IMG/M
3300026309\|Ga0209055_1102856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1135	Open in IMG/M
3300026538\|Ga0209056_10597692	Not Available	557	Open in IMG/M
3300027546\|Ga0208984_1096615	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300027681\|Ga0208991_1056826	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1181	Open in IMG/M
3300027738\|Ga0208989_10027686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1958	Open in IMG/M
3300027909\|Ga0209382_10703297	Not Available	1087	Open in IMG/M
3300028047\|Ga0209526_10179031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1476	Open in IMG/M
3300028536\|Ga0137415_10950903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	670	Open in IMG/M
3300028793\|Ga0307299_10180251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	795	Open in IMG/M
3300028875\|Ga0307289_10151022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	955	Open in IMG/M
3300028876\|Ga0307286_10306023	Not Available	588	Open in IMG/M
3300028889\|Ga0247827_11308594	Not Available	507	Open in IMG/M
3300031200\|Ga0307496_10074445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	620	Open in IMG/M
3300033550\|Ga0247829_10523905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	983	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.39%
Host-Associated	Host-Associated	12.61%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.88%
Plants	Host-Associated → Plants	12.61%
Aquatic	Environmental → Aquatic	4.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.71%
Sediment	Environmental → Aquatic → Sediment	3.60%
Freshwater	Environmental → Aquatic → Freshwater	0.90%
Roots	Host-Associated → Plants → Roots	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.06%
Loam	Environmental → Terrestrial → Soil → Loam	19.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.60%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.90%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	45.95%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.60%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.12%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.91%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	9.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.41%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.50%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.80%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.90%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.90%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.90%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012021	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T1	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027546	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031200	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 9_S	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_102569532	3300001661	Forest Soil	MDILIRIARTGLRRGIRTGSRRWLVTGITAGVLALVRRALTESPETVYRTELKPGERIEVRTIPRNP*
Ga0066395_100461574	3300004633	Tropical Forest Soil	MDILMRLARTGLRRGIRTGSRRWLVTGITAGLLAIVRRVLRESPETVYRTELKPGERLEIRTLPPNP*
Ga0066672_103698662	3300005167	Soil	MIDILIRIARTGLRRGISTGSRRWLVTGITAGVLALVRRALTESPETVYRTELKPGERIEVRTIPRNP*
Ga0066809_100496813	3300005168	Soil	LIDILIRLARTGLRRGIRYGSRRWLITGITAGLLALVQRMLTEPPKTVYSAELKPGEQLEIRTLPPDS*
Ga0066683_101816453	3300005172	Soil	MMDILIRIARTGLRRGIRTGSRRWLVTGITAGLLALVRRALTQSPETVYRTELKPGERLEVRTIPRNP*
Ga0066684_101660602	3300005179	Soil	MDILIRLARTGLRRGIRYGSRRWLITGITAGVLALVQRVLTEPPKTVYRTELKPGERVEIRTIPPNP*
Ga0066388_1000006267	3300005332	Tropical Forest Soil	MMDFLVRLARTGLRRGIRTGSRRWLITGITAGTLAIARRVLTESPKTVYRAELKPGERLEIRTLPPNP*
Ga0066388_1002469915	3300005332	Tropical Forest Soil	MMEMLVRLARTGLRRGIRTGSRRWVVTGITAGLLVIVQRVLSESPATVYRTELQPGERLEIRTLPPSP*
Ga0066388_1010281404	3300005332	Tropical Forest Soil	MMEILVRLARTGLRRGIQTGSHRWLVTGITAGLLVIVQRVLSESPKTVYRTELQPGERLEIRTLPRSP*
Ga0070709_114316232	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LMDILIRLARTGLRRGIRYGSRRWLITGITAGVLALVQRVLTEPPKTVYSTELKPGERLEIRTIPPNS*
Ga0070713_1007309552	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MMDVLIRIARTGLRRGIRTGSRRWLVTGITAGLLALARRALKESPETVYRTELKPGERLEIRTIPRNP*
Ga0070713_1011084532	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MDILIRLARTGLRRGIRYGSRRWLITGITAGLLALAQRVLTEPPKTVYSSELKPGERLEIRTIPRNP*
Ga0070705_1019090601	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MMDILIRIARTGLRRGIRTGSRRWLVTGITAGLLALARRALKESPETVYRTELKPGERLEIRTIPRNP*
Ga0070708_1000586174	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MDILIRLARTGLRRGIRYGSRRWLITGITAGVLALVQRVLTEPPKTVYSTELKPGERLEIRTIPPNP*
Ga0070707_1005723633	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MDILIRLARTGLRRGIRYGSRRWLITGITAGVLALVQRVLTEPPKTVYSTELKPGERLEIRTIPPNS*
Ga0070704_1018711462	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	LMDILIRLARTGLRRGIRYGSRRWLITGITAGVLALVQRVLTEPPKTVYSTELKPGERLEIRTIPPNP*
Ga0066661_100818013	3300005554	Soil	MDILIRIARTGLRRGIRTGSRRWIVTGITAGALALVRRALTESPETVYRTELKPGERIEVRTIPPNP*
Ga0066707_102113793	3300005556	Soil	TGLRRGIRTGSRRWLVTGITAGLLALVRRALTQSPETVYRTELKPGERLEVRTIPRNP*
Ga0066700_101546171	3300005559	Soil	MDILIRIARTGLRRGISTGSRRWLVTGITAGVLALVRRALTESPETVYRTELKPGERIEV
Ga0066670_101429974	3300005560	Soil	MDILIRLARTGLRRGIRYGSRRWLITGITAGVLALIQRVLTEPPKTVYRTELKPGERVEIRTIPPNP*
Ga0066691_102851033	3300005586	Soil	MDILIRVARTGLRRGIRYGSRRWLITGITAGVLALVQRVLTEPPKTVYRTELKPGERVEIRTIPPNP*
Ga0066905_1000177194	3300005713	Tropical Forest Soil	MMDILVRLARTGLRRGIRTGSRRWLVTGITAGLLAIARRVLTESPRTVYRAELRPGERLEIRTLPPNP*
Ga0066903_1000911505	3300005764	Tropical Forest Soil	MMDILVRLARTGLRRGIRTGSRRWLVTGITAGFLAIARRLLTESPETVYRTELKPGERLEIRTLPPNP*
Ga0081538_102640503	3300005981	Tabebuia Heterophylla Rhizosphere	GAARLMDILVRVARTGIRRGIRYGSRRWLITGITAGFLALVRRMLTEPPKTVYETELEPGERLEIRTIPPNP*
Ga0066652_1004857611	3300006046	Soil	VMDILIRLARTGLRRGIRYGSRRWLITGITAGLLALVQRMLTEPPKTVYSSELKPGERLEIRTLPPNS*
Ga0075018_101811574	3300006172	Watersheds	LIDILIRLARIGLRRGIRYGSRRWLITGIAAGLLALAQRVLTEPPKTVYSAELEPDERLEIRTTPPNP*
Ga0074055_111408611	3300006573	Soil	VPRPQAPHDRGGATRLIDILIRLARIGLRRGIRYGSRRWLITGIAAGLLALAQRVLTEPPKTVYSAELEPGERLEIRTIPPNP*
Ga0074053_117981233	3300006575	Soil	LIDILIRLARIGLRRGIRYGSRRWLITGIAAGLLALAQRVLTEPPKTVYSAELEPDERLEIRTIPPNP*
Ga0074048_100466923	3300006581	Soil	IDILIRLARTGLRRGIRYGSRRWLITGITAGLLALVQRMLTEPPKTVYSAELKPGEQLEIRTLPPDS*
Ga0066659_116705672	3300006797	Soil	MMDILIRIARTGLRRGIRTGSRRWIVTGITAGVLALVRRALTESPETVYRTELKPGERIEVRTIPPNP*
Ga0075428_1001083184	3300006844	Populus Rhizosphere	MDILIRLARTGLRRGIRYGSRRWLITGITAGLLALLQRMLTEPPKTVYSEELKPGERLEIRTIPRNP*
Ga0075428_1001906094	3300006844	Populus Rhizosphere	VMDILIRLARIGLRRGIRYGSRRWLMTGITAGLLALVQRMLTEPPKTVYSAELKPGERLEIRTIPPNS*
Ga0075421_1006173994	3300006845	Populus Rhizosphere	VMDILIRLARIGLRRGIRYGSRRWLMTGITAGLLALVQRMLTEPPKTVYSAELKPGERLEIRTIPP
Ga0075421_1013458231	3300006845	Populus Rhizosphere	MDILIRLARIGLRRGIRYGSRRWLMTGITAGLLALVQRMLTEPPKTVYSAELKPGERLEIRTIPPNS*
Ga0075430_1006247902	3300006846	Populus Rhizosphere	VMDILIRLARIGLRRGIRYGSRRWLMTGITAGLLALVQRMLTEPPKTVYSAELEPGERLEIRTIPPDS*
Ga0075420_1004206251	3300006853	Populus Rhizosphere	MMDILIRIARTGLRRGIRTGSRRWLVTGITAGLLALARRALKESPETVYRTELKPGERL
Ga0075420_1004227261	3300006853	Populus Rhizosphere	VMDILIRLARIGLRRGIRYGSRRWLMTGITAGLLALVQRMLTEPPKTVYSAELKPGE
Ga0075420_1009110781	3300006853	Populus Rhizosphere	MDILIRLARIGLRRGIRYGSRRWLMTGITAGLLALVQRMLTEPPKTVYSAELKPGERLEIRTIPPDS*
Ga0075429_1001538924	3300006880	Populus Rhizosphere	MDILIRLARTGLRRGIRYGSRRWLITGITAGLLALLQRMLTEPPKTVYSEELKPGERLDIRTIPRNP*
Ga0074063_133458601	3300006953	Soil	DILIRLARIGLRRGIRYGSRRWLITGIAAGLLALAQRVLTEPPKTVYSAELEPDERLEIRTIPPNP*
Ga0075419_114530292	3300006969	Populus Rhizosphere	LMDILIRLARTGLRRGIRYGSRRWLITGITAGLLALLQRMLTEPPKTVYSAELKPGERLEIRTIPRNP*
Ga0066710_1045648541	3300009012	Grasslands Soil	LMDILIRLARTGLRRGIRYGSRRWLITGITAGVLALIQRVLTEPPKTVYRTELKPGERVEIRT
Ga0111539_104314202	3300009094	Populus Rhizosphere	MDILIRIARTGLRRGIRTGSRRWLVTGITAGLLALARRALKESPETVYRTELKPGERLEIRTIPRNP*
Ga0111539_135139312	3300009094	Populus Rhizosphere	MEILIRLARTGLRRGIRYGSRRWLITGITAGLLALLQRMLTEPPKTVYSAELKPGERLEIRTIPRNP*
Ga0126307_100139525	3300009789	Serpentine Soil	MEILIRLARTGLRRGIRYGSRRWLIMGITAGLLALVQRMITEPPKAVYSTELEPGERLEIRTIPPNS*
Ga0126307_100881975	3300009789	Serpentine Soil	GLRRGIRYGSRRWLIAGITAGLLALAKRVLTEGPETVYRTELQPGERLEVRTIPRNP*
Ga0126374_102430183	3300009792	Tropical Forest Soil	MDVLLRLARTGLRRGIRTGSRRWLMTGITAGLLALVRRALTESPKTVYRAELKPGERLEIRTLPPNP*
Ga0126313_100052106	3300009840	Serpentine Soil	MDILIRIARTGLRRGIRYGSRRWLITGITAGLLALVQRVLTQSPKTVYSTELKAGERLEIRTIPRNP*
Ga0126305_102416611	3300010036	Serpentine Soil	MDILIRIARTGLRRGIRYGSRRWLITGITAGLLALVQRVLTQSPKTVYSTELKAGEL
Ga0126305_104468132	3300010036	Serpentine Soil	MDILIRLARTGLRRGIRYGSRRWLITGITAGLLALVQRMITEPPKAVYSTELEPGERLEIRTIPPNS*
Ga0126304_100742274	3300010037	Serpentine Soil	MEILIRLARTGLRRGIRYGSRRWLITGISAGLLALVQRMITEPPKAVYSTELEPGERLEIRTIPPNS*
Ga0126304_102608533	3300010037	Serpentine Soil	MDILMRIARTGLRRGIRYGSRRWLIAGITAGLLALAKRVLTEGPETVYRTELQPGERLEVRTIPRNP*
Ga0126312_105740222	3300010041	Serpentine Soil	MDILMRIARTGLRRGIRYGSRRWLITGITAGLLALAKRVLTERPETVYRTELEPGERLEVRTVPRNP*
Ga0126380_104887081	3300010043	Tropical Forest Soil	MDILVRLARTGLRRGIRTGSRRWLVTGITAGLLAIARRVLTESPRTVYRAELRPGERLEIRTLPPNP*
Ga0126384_113438403	3300010046	Tropical Forest Soil	MDMLVRLARTGLRRGIRTGSRRWLVTGITAGMLAIVRRVLTESPETVYRTELKPGERVEIRTLPPNP
Ga0126306_100281254	3300010166	Serpentine Soil	MDILMRIARTGLRRGIRYGSRRWLIAGITAGSLALAKRVLTEGPETVYRTELQPGERLEVRTIPRNP*
Ga0126306_111363841	3300010166	Serpentine Soil	RRGIRYGSRRWLITGITAGLLALVQRVLTQSPKTVYSTELKAGERLEIRTIPRNP*
Ga0134080_104838242	3300010333	Grasslands Soil	MDILIRIARTGLRRGIRTGSRRWLVTGITAGLLALVRRALTQSPETVYRTELKPGERIEVRTIPRNP*
Ga0126370_118733582	3300010358	Tropical Forest Soil	MDILMRLARTGLRRGIRTGSRRWLVTGITAGLLAIVQRVLRESPETVYRTELKPGERLEIRTLPPNP*
Ga0126377_103269351	3300010362	Tropical Forest Soil	MDILVRLARTGLRRGIRTGSRRWLVTGITAGLLAIARRVLTESPRTVYRAELRPGERLEIRTLPPN
Ga0126383_112187203	3300010398	Tropical Forest Soil	MDMLVRLARAGLRRGIRTGSRRWLVTGITAGMLAIVRRVLTESPETVYRTELKPGERVEIRTLPPNP*
Ga0120192_100872772	3300012021	Terrestrial	MDILVRIARTGLRRGIRYGSRRWLITGISAGLLALVHRMITEPPKTVHSAELKPGERLEIRTIPRNPESLPPRPAGT
Ga0137383_104050214	3300012199	Vadose Zone Soil	MDILIRIARTGLRRGIRTGSRRWLVTGITAGVLALVRRALTESPKTVYRTELKPGERIEVRTIPRNP*
Ga0137382_102134441	3300012200	Vadose Zone Soil	MDILIRIARTGLRRGISTGSRRWLVTGITAGVLALVRRAMTESPETVYRTELKPGERIEVRTIPRSP*
Ga0137365_102657611	3300012201	Vadose Zone Soil	MDILIRLARTGLRRGIRYGSRRWLMTGITAGLLALLQRVLTEPPKTVYSTELKPGERVEIRTIPPNP*
Ga0137374_100249588	3300012204	Vadose Zone Soil	VTIDFLIRIARTGLRRGIRQGSRGWLFTGITAGLLALARRAVAEPRRTVFRAELKPGERVQIRTIPRNP*
Ga0137374_100902095	3300012204	Vadose Zone Soil	VTIDFLIRIARTGLRRGIRQGSRGWLFTGITAGLLALARRAVSEPRRTVYRAELKPGERVQIRTIPRNP*
Ga0137374_108705492	3300012204	Vadose Zone Soil	MDILIRLARTGLRRGIRYGSRRWLITGITAGLLALLQRMLTEPPKTVYSTELKPDERLEIRTVPPNS*
Ga0137380_107544483	3300012206	Vadose Zone Soil	MDILIRIARTGLRRGISTGSRRWLVTGITAGVLALVRRALTESPKTVYRTELKPGERIEVRTIPRNP*
Ga0137379_108679351	3300012209	Vadose Zone Soil	RTGLRRGIRTGSRPWLVTGITAGLLALVRRALTESPETVYRTELQPGERLEVRTIPRNP*
Ga0137378_113681143	3300012210	Vadose Zone Soil	MDILIRLARTGLRRGIRYGSRRWLMTGITAGLLALLQRVLTEPPKTVYSTELKPGERVEIRTIPRNP*
Ga0137370_104678182	3300012285	Vadose Zone Soil	MDILIRLARTGLRRGIRYGSRRWLITGITAGLLALVQRMLTEPPKTVYSSELKPGERLEIRTLPPNS*
Ga0137372_100051134	3300012350	Vadose Zone Soil	VTIDFLIRIARTGLRRGIRTGSRGWLFTGITAGLLALARRAVSEPRRTVYRAELKPGERVQIRTIPRNP*
Ga0137372_100812983	3300012350	Vadose Zone Soil	MDILIRIARTGLRRGIRTGSRRWLVTGITAGLLALVRRALTESPETVYRTELKPGERLEVRTIPRNP*
Ga0137371_105916412	3300012356	Vadose Zone Soil	MDILIRIARTGLRRGIRTGSRRWLVTGITAGLLALVRRALTQSPETVYRTELKPGERLEVRTIPRNP*
Ga0137384_101639024	3300012357	Vadose Zone Soil	VNVILRIARTGLRRGLRDGSPRWLIVGITAGAVALIRRALTETPTTLYATELKPGERVEIRTVPRDS*
Ga0137385_104076894	3300012359	Vadose Zone Soil	RTGLRRGIRTGSRRWLVTGITAGVLALVRRALTESPKTVYRTELKPGERIEVRTIPRNP*
Ga0137373_107217552	3300012532	Vadose Zone Soil	VTDILIRLARTGLRRGIRYGSRRWLITGITAGLLALLQRMITEPPKTVYSTELEPGERLEIRTIPPNS*
Ga0137419_103497043	3300012925	Vadose Zone Soil	MIDILIRLARTGLRRGIRTGSRRWLVTGITAGVLALVRRALTESPETVYRTELKPGERIEVRTIPRNP*
Ga0164304_104876052	3300012986	Soil	MDILIRLARTGLRRGIRYGSRRWLITGITAGVLALVQRVLTEPPKTVYSTELEPGERLEIRTIPPNS*
Ga0182000_106912492	3300014487	Soil	MDILIRLARTGLRRGIRQGSRRWLITGITAGLLALVQRMLTEPPKTVYSAELKPGERLEIRTIPPNS*
Ga0137418_102338862	3300015241	Vadose Zone Soil	VIDILIRLARTGLRRGIRTGSRRWLVTGITAGVLALVRRALTESPETVYRTELKPGERIEVRTIPRNP*
Ga0184612_102278393	3300018078	Groundwater Sediment	MDILIRLARTGLRRGIRYGSRRWLITGITAGLLALLQRMLTEPPKTVYSTELKPGERVEIRTVPPNS
Ga0184625_101155703	3300018081	Groundwater Sediment	MDILIRLARTGLRRGIRYGSRRWLITGITAGLLALLQRMLTEPPKTVYSSELKPGERLEIRTVPPNS
Ga0066655_102260384	3300018431	Grasslands Soil	MDILIRLARTGLRRGIRYGSRRWLITGITAGVLALVQRVLTEPPKTVYRTELKPGERVEIRTIPPNS
Ga0066655_114079181	3300018431	Grasslands Soil	MMDILIRIARTGLRRGIRTGSRRWLVTGITAGLLALVRRALTQSPETVYRTELKPGERLEVRTIPR
Ga0066667_109790281	3300018433	Grasslands Soil	MMDILIRIARTGLRRGISTGSRRWLVTGITAGVLALVRRALTESPETVYRTELKPGERIEVRTIPPNP
Ga0190269_115550271	3300018465	Soil	RTGLRRGIRYGSRRWLVTGITAGLLALLQRMLTEPPKTVYSTELKPGERLEIRTVLPNS
Ga0190270_103367361	3300018469	Soil	RGGATRLMDILIRLARTGLRRGIRYGSRRWLITGITAGLLALVQRMLTEPPKTVYSTELEPGERVEIRTVSPNS
Ga0066669_104045863	3300018482	Grasslands Soil	HDRGGATRVMDILIRLARTGLRRGIRYGSRRWLITGITAGLLALVQRMLTEPPKTVYSSELKPGERLEIRTLPPNS
Ga0193739_10407403	3300020003	Soil	MDILIRLARTGLRRGIRYGSRRWLITGITAGLLALVQRMLTEPPKTVYSTELKPGERVEIRTVPPNS
Ga0210378_100583621	3300021073	Groundwater Sediment	MDILIRLARTGLRRGIRYGSRRWLITGITAGLLALLQRMLTEPPKTVYSAELKPGERLEIRTVPPNS
Ga0222623_101930382	3300022694	Groundwater Sediment	MDILIRLARTGLRRGIRYGSRRWLITGITAGLLALLQRMLTEPPKTVYSTELKPGERLEIRTVPPNS
Ga0207684_101566883	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MMDILIRIARTGLRRGIRTGSRRWLVTGITAGLLALARRALKESPETVYRTELKPGERLEIRTIPRNP
Ga0207684_102405863	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MDILIRLARTGLRRGIRYGSRRWLITGITAGVLALVQRVLTEPPKTVYSTELKPGERLEIRTIPPNP
Ga0207700_102680692	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MMDVLIRIARTGLRRGIRTGSRRWLVTGITAGLLALARRALKESPETVYRTELKPGERLEIRTIPRNP
Ga0207700_108906432	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MDILIRLARTGLRRGIRYGSRRWLITGITAGLLALAQRVLTEPPKTVYSSELKPGERLEIRTIPRNP
Ga0209055_11028563	3300026309	Soil	MDILIRIARTGLRRGIRTGSRRWIVTGITAGALALVRRALTESPETVYRTELKPGERIEVRTIPPNP
Ga0209056_105976922	3300026538	Soil	LMDILIRLARTGLRRGIRYGSRRWLITGITAGVLALVQRVLTEPPKTVYRTELKPGERVEIRTIPPNP
Ga0208984_10966151	3300027546	Forest Soil	PQAPDHRRGAAHVMDILIRIARTGLRRGIRTGSRRWLVTGITAGVLALVRRALTESPETVYRTELKPGERIEVRTIPRNP
Ga0208991_10568263	3300027681	Forest Soil	MMDMLIRIARTGLRRGIRTGSRRWLVTGITAGVLALVRRALTESPETVYRTELKPGERIEVRTIPRNP
Ga0208989_100276863	3300027738	Forest Soil	MMDMLIRIARTGLRRGIRTGSRRWLVTGITAGVLALVQRALTESPETVYRTELKPGERIEVRTIPRNP
Ga0209382_107032973	3300027909	Populus Rhizosphere	VMDILIRLARIGLRRGIRYGSRRWLMTGITAGLLALVQRMLTEPPKTVYSAELKPGERLEIRTIPPNS
Ga0209526_101790314	3300028047	Forest Soil	MDILIRLARTGLRRGIRYGSRRWLITGITAGLLALAQRVLTEPPNTVYSSELKPGERLEIRTIPPNP
Ga0137415_109509031	3300028536	Vadose Zone Soil	RGAAHVMDILIRIARTGLRRGIRTGSRRWLVTGITAGVLALVRRALTESPETVYRTELKPGERIEVRTIPRNP
Ga0307299_101802513	3300028793	Soil	MDILIRLARTGLRRGIRYGSRRWLITGITAGLLALLQRMLTEPPKTVYSSELKPGERLEIRTVP
Ga0307289_101510224	3300028875	Soil	MDILIRLARTGLRRGIRYGSRRWLVTGITAGLLALLQRMLTEPPKTVYSTELKPGERVEIRTVPPNS
Ga0307286_103060232	3300028876	Soil	LMDILIRLARTGLRRGIRYGSRRWLITGITAGLLALLQRMLTEPPKTVYSSELKPGERLEIRTVPPNS
Ga0247827_113085941	3300028889	Soil	VMDILIRLARTGLRRGIRYGSRRWLITGITAGLLALLQRMLTEPPKTVYSAELKPGERLEIRTIPPDS
Ga0307496_100744451	3300031200	Soil	ILIRLARTGLRRGIRYGSRRWLITGITTGLLALLQRMLTEPPKTVYSTELKPGERLEIRTVPPNS
Ga0247829_105239054	3300033550	Soil	VMDILIRLARTGLRRGIRYGSRRWLITGITAGLLALLQRMLTEPPKTVYSAELKPGERLEIRTIPRNP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086129

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences