Metagenome / Metatranscriptome Family F086119

Basic Information
Family ID	F086119
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	92 residues
Representative Sequence	DSIVHKINIVRLISLDTTPARLHDALQKHPSTQNLRRYADDDLPRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR
Number of Associated Samples	108
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	5.66 %
% of genes near scaffold ends (potentially truncated)	90.09 %
% of genes from short scaffolds (< 2000 bps)	90.99 %
Associated GOLD sequencing projects	105
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (56.757 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.324 % of family members)
Environment Ontology (ENVO)	Unclassified (20.721 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.441 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.39% β-sheet: 8.70% Coil/Unstructured: 48.91%
Feature Viewer

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Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF01641	SelR	77.48
PF01625	PMSR	17.12

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0229	Peptide methionine sulfoxide reductase MsrB	Posttranslational modification, protein turnover, chaperones [O]	77.48
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	17.12

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.76 %
All Organisms	root	All Organisms	43.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.76 %
cellular organisms	root	All Organisms → cellular organisms	43.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.76 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.76 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	24.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.76 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	24.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.76 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.76 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	2.70 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.90 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.76 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	2.70 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.90 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.76 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	2.70 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.90 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.76 %
unclassified Frankia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia	1.80 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.90 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.76 %
Frankia sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp.	0.90 %
Frankia sp. Iso899	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. Iso899	0.90 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.90 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459012\|GOYVCMS02FL5IH	Not Available	559	Open in IMG/M
2170459024\|GZRSKLJ01CJS5L	Not Available	514	Open in IMG/M
2170459024\|GZRSKLJ02JG6RZ	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300005167\|Ga0066672_10384435	Not Available	918	Open in IMG/M
3300005171\|Ga0066677_10727506	Not Available	553	Open in IMG/M
3300005179\|Ga0066684_10867637	Not Available	591	Open in IMG/M
3300005335\|Ga0070666_10112161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1886	Open in IMG/M
3300005341\|Ga0070691_10039864	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2219	Open in IMG/M
3300005436\|Ga0070713_101118714	Not Available	761	Open in IMG/M
3300005439\|Ga0070711_100498231	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300005457\|Ga0070662_101386061	Not Available	606	Open in IMG/M
3300005459\|Ga0068867_101926960	Not Available	557	Open in IMG/M
3300005468\|Ga0070707_102297206	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300005526\|Ga0073909_10066385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp.	1351	Open in IMG/M
3300005535\|Ga0070684_100511628	All Organisms → cellular organisms → Bacteria	1112	Open in IMG/M
3300005546\|Ga0070696_100510553	Not Available	958	Open in IMG/M
3300005576\|Ga0066708_10875565	Not Available	561	Open in IMG/M
3300005598\|Ga0066706_10817038	Not Available	734	Open in IMG/M
3300006032\|Ga0066696_10295281	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300006172\|Ga0075018_10796531	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300006173\|Ga0070716_100309915	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300006578\|Ga0074059_12164257	Not Available	540	Open in IMG/M
3300006606\|Ga0074062_10031926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1354	Open in IMG/M
3300009098\|Ga0105245_11472721	Not Available	731	Open in IMG/M
3300010360\|Ga0126372_11907324	Not Available	639	Open in IMG/M
3300010371\|Ga0134125_12166077	Not Available	605	Open in IMG/M
3300010375\|Ga0105239_12902736	Not Available	559	Open in IMG/M
3300010376\|Ga0126381_103283070	Not Available	638	Open in IMG/M
3300010396\|Ga0134126_11377735	Not Available	780	Open in IMG/M
3300012200\|Ga0137382_10741507	Not Available	705	Open in IMG/M
3300012203\|Ga0137399_10541920	All Organisms → cellular organisms → Bacteria	977	Open in IMG/M
3300012206\|Ga0137380_10399790	All Organisms → cellular organisms → Bacteria	1220	Open in IMG/M
3300012208\|Ga0137376_11259607	Not Available	629	Open in IMG/M
3300012212\|Ga0150985_115402056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1094	Open in IMG/M
3300012224\|Ga0134028_1141077	Not Available	690	Open in IMG/M
3300012353\|Ga0137367_10197256	All Organisms → cellular organisms → Bacteria	1459	Open in IMG/M
3300012389\|Ga0134040_1002758	Not Available	559	Open in IMG/M
3300012397\|Ga0134056_1032225	Not Available	519	Open in IMG/M
3300012476\|Ga0157344_1031222	Not Available	512	Open in IMG/M
3300012481\|Ga0157320_1002321	Not Available	1063	Open in IMG/M
3300012491\|Ga0157329_1016260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	652	Open in IMG/M
3300012498\|Ga0157345_1024987	Not Available	634	Open in IMG/M
3300012915\|Ga0157302_10318616	Not Available	611	Open in IMG/M
3300012955\|Ga0164298_10858096	Not Available	656	Open in IMG/M
3300012958\|Ga0164299_10455820	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300012971\|Ga0126369_11288891	Not Available	820	Open in IMG/M
3300012977\|Ga0134087_10103540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1195	Open in IMG/M
3300012985\|Ga0164308_10584484	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300012986\|Ga0164304_10279240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1134	Open in IMG/M
3300015242\|Ga0137412_10564071	Not Available	865	Open in IMG/M
3300015371\|Ga0132258_11805764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1541	Open in IMG/M
3300015372\|Ga0132256_100384290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1503	Open in IMG/M
3300016270\|Ga0182036_11119185	Not Available	653	Open in IMG/M
3300016445\|Ga0182038_12012854	Not Available	523	Open in IMG/M
3300019361\|Ga0173482_10364789	Not Available	659	Open in IMG/M
3300020081\|Ga0206354_11509983	Not Available	845	Open in IMG/M
3300021088\|Ga0210404_10432770	Not Available	738	Open in IMG/M
3300021178\|Ga0210408_10595847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	875	Open in IMG/M
3300021404\|Ga0210389_10342023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1174	Open in IMG/M
3300021415\|Ga0193694_1018327	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300021474\|Ga0210390_11569368	Not Available	519	Open in IMG/M
3300022531\|Ga0242660_1043927	Not Available	952	Open in IMG/M
3300022724\|Ga0242665_10050109	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300024254\|Ga0247661_1043794	Not Available	815	Open in IMG/M
3300025903\|Ga0207680_10598969	Not Available	788	Open in IMG/M
3300025907\|Ga0207645_10058306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2465	Open in IMG/M
3300025918\|Ga0207662_10038664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2796	Open in IMG/M
3300025922\|Ga0207646_10107294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2505	Open in IMG/M
3300025929\|Ga0207664_11607468	Not Available	572	Open in IMG/M
3300025931\|Ga0207644_11565497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	553	Open in IMG/M
3300025940\|Ga0207691_10097341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2630	Open in IMG/M
3300025942\|Ga0207689_10899085	Not Available	747	Open in IMG/M
3300027176\|Ga0208992_1024414	Not Available	794	Open in IMG/M
3300027512\|Ga0209179_1077600	Not Available	731	Open in IMG/M
3300028138\|Ga0247684_1041698	Not Available	737	Open in IMG/M
3300028714\|Ga0307309_10147492	Not Available	593	Open in IMG/M
3300028768\|Ga0307280_10092781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	995	Open in IMG/M
3300028784\|Ga0307282_10081850	All Organisms → cellular organisms → Bacteria	1480	Open in IMG/M
3300028799\|Ga0307284_10334683	Not Available	611	Open in IMG/M
3300028811\|Ga0307292_10211258	Not Available	799	Open in IMG/M
3300029636\|Ga0222749_10227909	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300030989\|Ga0308196_1003273	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1394	Open in IMG/M
3300031114\|Ga0308187_10043443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1204	Open in IMG/M
3300031231\|Ga0170824_100035946	All Organisms → cellular organisms → Bacteria	1119	Open in IMG/M
3300031715\|Ga0307476_10405179	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300031716\|Ga0310813_10280777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1398	Open in IMG/M
3300031748\|Ga0318492_10303303	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300031771\|Ga0318546_10283527	All Organisms → cellular organisms → Bacteria	1144	Open in IMG/M
3300031778\|Ga0318498_10106219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1274	Open in IMG/M
3300031819\|Ga0318568_10417961	Not Available	835	Open in IMG/M
3300031820\|Ga0307473_11114355	Not Available	582	Open in IMG/M
3300031845\|Ga0318511_10228221	Not Available	832	Open in IMG/M
3300031859\|Ga0318527_10535029	Not Available	500	Open in IMG/M
3300031860\|Ga0318495_10413072	Not Available	594	Open in IMG/M
3300031897\|Ga0318520_10144579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. Iso899	1374	Open in IMG/M
3300031945\|Ga0310913_10635430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	756	Open in IMG/M
3300031962\|Ga0307479_10525140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1167	Open in IMG/M
3300032009\|Ga0318563_10140341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1293	Open in IMG/M
3300032009\|Ga0318563_10180583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1136	Open in IMG/M
3300032009\|Ga0318563_10290516	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300032052\|Ga0318506_10243361	Not Available	796	Open in IMG/M
3300032089\|Ga0318525_10343948	Not Available	765	Open in IMG/M
3300032091\|Ga0318577_10455198	Not Available	611	Open in IMG/M
3300033134\|Ga0335073_11503575	Not Available	649	Open in IMG/M
3300033158\|Ga0335077_10985193	Not Available	842	Open in IMG/M
3300034644\|Ga0370548_086449	Not Available	616	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.68%
Host-Associated	Host-Associated	15.32%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.78%
Plants	Host-Associated → Plants	15.32%
Aquatic	Environmental → Aquatic	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.11%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.21%
Sediment	Environmental → Aquatic → Sediment	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.27%
Loam	Environmental → Terrestrial → Soil → Loam	11.71%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.31%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.41%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.23%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	30.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.41%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.41%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.21%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.60%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	3.60%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.70%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.80%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.80%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.80%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.90%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.90%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459012	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO1O1 lysis Rhizosphere grass	Environmental	Open in IMG/M
2170459024	Grass soil microbial communities from Rothamsted Park, UK - FD1 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012224	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012389	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012397	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012476	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.yng.070610	Host-Associated	Open in IMG/M
3300012481	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.1.yng.040610	Host-Associated	Open in IMG/M
3300012491	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.8.old.040610	Host-Associated	Open in IMG/M
3300012498	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.yng.090410	Host-Associated	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021415	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s1	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022708	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024254	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK02	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027176	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300028138	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK25	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030989	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_197 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N56_02601180	2170459012	Grass Soil	TTPARLHDSLQKHPSTQTLRRYADNNLPRLSRRLESDATNELDLFLAKVYRLGHHKLLVYPFRPSVHRSHRASSPT
FD1_04506650	2170459024	Grass Soil	HKINIVRLINLDTTPARLHDALQEHPSTQNLRRYADDDLPRLARRLESDATNELDLFLATVYRLGYHKLLIYPFRPSVHRSPRASTPR
FD1_05474760	2170459024	Grass Soil	IVRLINLETTPARLRDSLQKHPSTQTLRRYADNDLPRLSRRLESDATNELDLFLAKVYRLGHHKLLIYPFRPSVHRSHRASSPT
Ga0066672_103844352	3300005167	Soil	ALEELCDWRDSIVHKISIVRLINLDTTPARLRDSLQKHPSTQNLRRYAADDQQRLSRRLKSDATNELDLFLARVYRLGHHKLLVYPFRPSVHRSPRAQQPEVK*
Ga0066677_107275061	3300005171	Soil	KDRKAREELCDWRDSIVHKIGIVRLINLDTTPARLHDSLQKHPSTQNLRRWSDDDLPRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRASSPR*
Ga0066684_108676371	3300005179	Soil	DWRDSIVHKVSIVRLINLDTTPARLHDSLQKHPSTQNLRRYADADQQRLSRRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRASSPR*
Ga0070666_101121614	3300005335	Switchgrass Rhizosphere	EELCDWRDSIVHKINIVRLINLETTPARLHDALQKHPSTQNLRRYADDDLPRLARRLESDATNELDLFLATVYRLGYHKLLIYPFRPSVHREPRARTPR*
Ga0070691_100398641	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	ALEELCDWRDSIVHKINIVRLINLDTTPARLHDALQKHPSTQNLRRYADDDLPRLARRLESDATNELDLFLATVYRLGYHKLLIYPFRPSVHRSPRASTPR*
Ga0070713_1011187141	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	CDWRDSIVHKIGIVRLINLDTTPARLHDSLQKHPSTQNLRRWADDDLPRLSRRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSTRASSPT*
Ga0070711_1004982311	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	NLETTEARLRDSLQRHASTRHIRKYSDDDLPRLALRLQTEALNELNLYLAYVYRLGHHRLLVYPFRPSVHRTPREDVPRGRREEMK*
Ga0070662_1013860611	3300005457	Corn Rhizosphere	TPARLHDALQKHPSTQNLRRYADDDLPRLARRLESDATNELDLFLATVYRLGYHKLLIYPFRPSVHRSPRASTPR*
Ga0068867_1019269602	3300005459	Miscanthus Rhizosphere	IVHKINIVRLINLDTTPARLHDALQKHPSTQNMRRYADDDLPRLARRLESDATNELDLFLACVYRLGYHKLLIYPFRPSVHREPRARTPR*
Ga0070707_1022972062	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	PARLHDSLQKHPSTQTLRRYADNDLPRLSRRLVSDATNELDLFLAKVYRLGQHKMLIYPYRPSVHRSHRATSST*
Ga0073909_100663853	3300005526	Surface Soil	IVRLINLDTTPARLHDALQKHPSTQNMRRYADDDLPRLARRLESDATNELDLFLACVYRLGYHKLLIYPFRPSVHRSPRASTPR*
Ga0070684_1005116283	3300005535	Corn Rhizosphere	LINLDTTPARLHDALQKHPSTQNMRRYADDDLPRLARRLESDATNELDLFLACVYRLGYHKLLIYPFRPSVHREPRARTPR*
Ga0070696_1005105531	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	ALEELCDWRDSIVHKINIVRLINLDTTPARLHDALQKHPSTQNMRRYADDDLPRLARRLESDATNELDLFLACVYRLGYHKLLIYPFRPSVHREPRARTPR*
Ga0066708_108755652	3300005576	Soil	IVRLINLDTTPARLHDALQKHPSTQNLRRYADDDLPRLARRLESDATNELDLFLAAVYRLGYHKLLIYPFRPSVHRSPRASTPR*
Ga0066706_108170382	3300005598	Soil	IVRLINLDTTPARLHDSLQKHPSTQNLRRWSDDDLPRLARRLESDATNELDLFLASVYRLGHHKLLVYPFRPSVHRSPRAQQPEVK*
Ga0066696_102952813	3300006032	Soil	VHKISIVRLINLDTTPARLHDSLQKHPSTQNLRRYADADQQRLSRRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRASSPR*
Ga0075018_107965311	3300006172	Watersheds	RALEELCDWRDSIVHRISIVRLINLETTPARLHDSLQKHPSTQTLRRYADHDLPRLSRRLESDATNELDLFLAKLYRLGHHKLLIYPFRPSVHRSHRATSPT*
Ga0070716_1003099153	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LRRWRESIVHKISIVRLINLETTEARLRDSLQRHASTRHIRKYSDDDLPRLALRLQTEALNELNLYLAYVYRLGHHRLLVYPFRPSVHRTPREDVPRGRREEMK*
Ga0074059_121642571	3300006578	Soil	EELCDWRDSIVHKINIVRLINLDTTPARLHDALQKHPSTQNLRRYADDDLPRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR*
Ga0074062_100319261	3300006606	Soil	DSIVHKINIVRLISLDTTPARLHDALQKHPSTQNLRRYADDDLPRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR*
Ga0105245_114727212	3300009098	Miscanthus Rhizosphere	ARLHDALQKHPSTQNMRRYADDDLPRLARRLESDATNELDLFLACVYRLGYHKLLIYPFRPSVHREPRARTPR*
Ga0126372_119073241	3300010360	Tropical Forest Soil	RALEELCDWRDSIVHKISIVRLINLDSTPARLREWLQKHPSTRNLRRYAGDDLPRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR*
Ga0134125_121660771	3300010371	Terrestrial Soil	KGQIKDRRAREELCDWRDSIVHKIGIVRLINLDTTPARLRDSLQKHPSTQNLRRWADDDLPRLSRRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSTRASSPT*
Ga0105239_129027361	3300010375	Corn Rhizosphere	KDQPALEELCDWRDSIVHKINIVRLINLDTTPARLHDALQKHPSTQNLRRYSDDDLPRLTRRLESDATNELDLFLASAYRLGYHKLLIYPFRPSVHRSTRASSPT*
Ga0126381_1032830701	3300010376	Tropical Forest Soil	ELCDWRDSIVHKISIVRLINLDTTPARLHDSLQQHSSTQNLRRYADDELPRLARRLESDAINELDLFLAAVYRLGYHKLLIYPFRPSVHRSPRASSPT*
Ga0134126_113777351	3300010396	Terrestrial Soil	KGRIKDRRALEELCDWRDSIVHKINIVRLINLDTTPARLHDALQKHPSTQNLRRYSDDDLPRLTRRLESDATNELDLFLATVYRLGYHKLLIYPFRPSVHRSPRASTPR*
Ga0137382_107415071	3300012200	Vadose Zone Soil	TIVRLINLETTPARLHDSLLKHPSTHNLRRYAEDDPERLSRRLESDATNELDLFLARVYRLGYHKLLIYPFRPSVHRSPRASTPR*
Ga0137399_105419201	3300012203	Vadose Zone Soil	QVKGQIKDRRAREELCDWRDSIVHKIGIVRLINLDTTPARLRDSLQKHPSTQNLRRWADDDLPRLSRRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSTRASSPT*
Ga0137380_103997903	3300012206	Vadose Zone Soil	VRLINLDTAPARLHDALQKHPSTQNLRRYADDDLPRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRARTPR*
Ga0137376_112596072	3300012208	Vadose Zone Soil	KDRRALEELCDWRDTIVHNINIVRLIHLDTTPARLHDALQKHPSTQNLRRYADDDLPRLARRLESDATNELDLFLACVYRLGYHKLLIYPFRPSVHRSPRASTPR*
Ga0150985_1154020563	3300012212	Avena Fatua Rhizosphere	INIVRLINLDTTPARLHDALQEHPSTQNLRRYADDDLPRLARRLESDATNELDLFLACVYRLGYHKLLIYPFRPSVHRSPRASTPR*
Ga0134028_11410771	3300012224	Grasslands Soil	RRALEELCDWRDSIVHKINIVRLISLDTTPARLHDSLQKHPSTQNLRRYTDDNLPRLARRLESDAINELNLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR*
Ga0137367_101972564	3300012353	Vadose Zone Soil	NLDTAPARLHDALQKHPSTQNLRRYADDDLPRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRARTPR*
Ga0134040_10027581	3300012389	Grasslands Soil	HKINIVRLINLDTTPARLHDSLQKHSSTQNLRRYTDDNLPRLARRLESDAINELNLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR*
Ga0134056_10322252	3300012397	Grasslands Soil	VKGRIKDRRALEEFCDWRDSIVHKINIVRLINLDTTPARLHDSLQKHSSTQNLRRYTDDNLPRLARRLESDAINELNLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR*
Ga0157344_10312221	3300012476	Arabidopsis Rhizosphere	LHDAPQKHPSTQNMRRYADDDLPRLARRLESGATNELGLFLACVYRLGYHKLLIYPFRPSVHREPRARTPR*
Ga0157320_10023211	3300012481	Arabidopsis Rhizosphere	VHKINIVRLINLDTTPARLHDALQKHPSTQDLRRYADDDLPRLARRLESDATNELDLFLACVYRLGYHKLLIYPFRPSVHREPRARTPR*
Ga0157329_10162601	3300012491	Arabidopsis Rhizosphere	VHKINIVRLINLDTTPARLHDAPQKHPSTQNMRRYADDDLPRLARRLESGATNELGLFLACVYRLGYHKLLIYPFRPSVHREPRASTPR*
Ga0157345_10249871	3300012498	Arabidopsis Rhizosphere	VHKINIVRLINLDTTPARLHDALQKHPSTQNMRRYADDDLPRLARRLESDATNELDLFLACVYRLGYHKLLIYPFRPSVHREPRARTPR*
Ga0157302_103186161	3300012915	Soil	TPARLHDSLQEHPSTQNLRRWSDDDLPRLARRLESDATNELDLFLASVYRLGYHKLLVYPFRPSVHRSRRAQQPEVK*
Ga0164298_108580961	3300012955	Soil	TTPARLHDALQKHPSTQNLRRYSDDALLRLTRRLESDATNELDLFLAAVYRLGYHKLLIYPFRPSVHRSPRASTPR*
Ga0164299_104558202	3300012958	Soil	DTTPARLHDALQKHPSTQDLRRYADDDLPRLARRLESDATNELDLFLACVYRLGYHKLLIYPFRPSVHREPRARTPR*
Ga0126369_112888911	3300012971	Tropical Forest Soil	RRALAELCDWRDSIVHKISIVRLINLDTTPARLHDSLQRHPSTQNLRRPADDELPRLARRMESDAINELDLFLAAVYRLGYHKLLIYPFRPSVHRSPRASSPT*
Ga0134087_101035403	3300012977	Grasslands Soil	KGRIKDQRALEELCDWRDSIVHKVSIVRLINLDTTPARLHDSLQKHPSTQNLRRYADADQQRLSRRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR*
Ga0164308_105844843	3300012985	Soil	HKINIVRLINLDTTPARLHDALQKHPSTQDLRRYADDDLPRLARRLESDATNELDLFLACVYRLGYHKLLIYPFRPSVHREPRARTPR*
Ga0164304_102792401	3300012986	Soil	TPARLHDALQKHPSTQDLRRYADDDLPRLARRLESDATNELDLFLACVYRLGYHKLLIYPFRPSVHRSPRASTPR*
Ga0137412_105640711	3300015242	Vadose Zone Soil	RAREELCDWRDSIVHKIGIVRLINLDTTPARLRDSLQKHPSTQNLRRWADDDLPRLSRRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSTRASSPT*
Ga0132258_118057642	3300015371	Arabidopsis Rhizosphere	VHKINIVRLINLDTTPARLHDAPQKHPSTQNMRRYADDALPRLARRLESGATNELGLFLACVYRLGYHKLLIYPFRPSVHREPRARTPR*
Ga0132256_1003842901	3300015372	Arabidopsis Rhizosphere	VHKINIVRLINLDTTPARLHDAPQKHPSTQNMRRYADDDLPRLARRLESGATNELGLFLACVYRLGYHKLLIYPFRPSVHREPRARTPR*
Ga0182036_111191851	3300016270	Soil	KIGAVRLIKLDTTPARLHDWLQKHPSTQNRRRYADNDLPRLARRLESDATHELDLFLDSVYRLGYRKLLIYPFRPSVHRSPRASTST
Ga0182037_107209581	3300016404	Soil	RLRDSLQRHSSTRNQRRYADGNLARLARRLESDATNELDLFLAKVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0182038_120128541	3300016445	Soil	DRVQGRIKERRAGEELGDWRDSSVHKIGIVRLINLDTTPARLRDSLQKHPSTQNLRRYADDDLPRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRLSVQRSPRASSPT
Ga0173482_103647892	3300019361	Soil	TPARLHDALQKHPSTQNMRRYADDDLPRLARRLESDATNELDLFLACVYRLGYHKLLIYPFRPSVHRSPQASTQR
Ga0206354_115099832	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	EELCDWRDSIVHKINIVRLINLDTTPARLHDALQKHPSTQNMRRYADDDLPRLARRLESDATNELDLFLACVYRLGYHKLLIYPFRPSVHREPRARTPR
Ga0210404_104327702	3300021088	Soil	DRRAREELCDWRDSIVHKIGIVRLINLDTTPARLRDSLQKHPSTQNLRRWSDDDLPRLARRLESDATNELDLFLARVYRLGHHKLLIYPFRPSVHRSPRAQQPEVK
Ga0210408_105958472	3300021178	Soil	QVKGRIKDRRALEELCDWRDSIVHRISIVRLINLETTPARLHDSLQKHPSTQTLRRYADHDLPRLSRRLESDATNELDLFLAKVYRLGHHKLLIYPFRSSVHRSHRATSPT
Ga0210389_103420231	3300021404	Soil	TTPVRLRDALQEHPSTQNLRRYSDDDLPRLTRRLESDATNELDLFLATVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0193694_10183271	3300021415	Soil	RDSIVHKINIVRLINLDTVPARLHDSLQKHPSTQNLRRYADDDLLRLARRLESDATNELDLFLATVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0210390_115693682	3300021474	Soil	RAREELCDWRDSIVHKIGIVRLINLDTTPARLRDSLQKHPSTQNLRRWSDDDLPRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRASSPT
Ga0242660_10439272	3300022531	Soil	QVKGQIKDRRAREELCDWRDSEVHKIGIVRLINLDTTPARLRDSLQKHPSTQNLRRWSDDDLPRLSRRLESDATNELDLFLARVYRLGHHKLLIYPFRPSVHRSPRAQQPEVK
Ga0242670_10209192	3300022708	Soil	ARLRDSLQKHPSTQNLRRWSDDDLPRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPT
Ga0242665_100501091	3300022724	Soil	KGQIKDRRAREELCDWRDSIVHKIGIVRLINLDTTPARLRDSLQKHPSTQNLRRWSDDDLPRLSRRLESDATNELDLFLARVYRLGHHKLLIYPFRPSVHRSPRAQQPEVK
Ga0247661_10437941	3300024254	Soil	RLINLDTTPARLHDALQKHPSTQNMRRYADDDLPRLARRLESDATNELDLFLACVYRLGYHKLLIYPFRPSVHREPRARTPR
Ga0207680_105989691	3300025903	Switchgrass Rhizosphere	RDSIVHKINIVRLISLDTTPARLHDALQKHPSTQNLRRYADDDLPRLARRLESDATNELDLFLATVYRLGYHKLLIYPFRPSVHREPRARTPR
Ga0207645_100583061	3300025907	Miscanthus Rhizosphere	EELCDWRDSIVHKINIVRLISLDTTPARLHDALQKHPSTQNLRRYADDDLPRLARRLESDATNELDLFLATVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0207663_113861872	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	TPARLHDSLQKHPSTQNLRRWADDDLPRLSRRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSTRASSPT
Ga0207662_100386641	3300025918	Switchgrass Rhizosphere	ELCDWRDSITHKISIVRLIHLDTTPARLHDALQKHPSTQNMRRYADDDLPRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHREPRARTPR
Ga0207646_101072941	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	GRIKDRRTLEELCDWRDSIVHKIGIVRLINLETTPARLHDSLQKHPSTQTLRRYADNDLPRLSRRLVSDATNELDLFLAKVYRLGQHKMLIYPYRPSVHRSHRATSST
Ga0207664_116074682	3300025929	Agricultural Soil	DWRDSIVHKIGIVRLINLDTTPARLHDSLQKHPSTQNLRRWSDDDLPRLSRRLESDATNELDLFLARVYRLGHHKLLIYPFRPSVHRSPRAQQPEVK
Ga0207644_115654972	3300025931	Switchgrass Rhizosphere	IVRLINLDTTPARLHDALQKHPSTQDLRRYADDDLPRLARRLESDATNELDLFLACVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0207691_100973414	3300025940	Miscanthus Rhizosphere	IVHKINIVRLINLDTTPARLHDALQKHPSTQNMRRYADDDLPRLARRLESDATNELDLFLACVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0207689_108990852	3300025942	Miscanthus Rhizosphere	VHKINIVRLINLETTPARLHDALQKHPSTQNLRRYADDDLPRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0208992_10244141	3300027176	Forest Soil	SALEELCDWRDSIVHKINIVRLISLDTTPARLHDALQKHPSTQNLRRYADDDLPRLARRLESDATNELDLFLACVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0209179_10776002	3300027512	Vadose Zone Soil	LRDWRDSIVHKISIVRLINLETTPARLHDSLQKHPSTQNQRRYADDDLERLSRRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0247684_10416982	3300028138	Soil	DWRDSIVHKINIVRLINLDTTPARLHDALQKHPSTQNMRRYADDDLPRLARRLESDATNELDLFLPCVYRLGYHKLLIYPFRPSVLREPRARTPR
Ga0307309_101474921	3300028714	Soil	DWRDSIVHKINIVRLINLDTVPARLHDSLQKHPSTQNLRRYADDNLPRLARRLESDAINELNLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0307280_100927811	3300028768	Soil	NIVRLISLDTTPARLHDALQKHPSTQNLRRYADDDLPRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0307282_100818503	3300028784	Soil	QPALEELCDWRDSIVHKINIVRLISLDTTPARLHDALQKHPSTQNLRRYADDDLTRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0307284_103346831	3300028799	Soil	IVRLINLDTVPARLHDSLQKHPSTQNLRRYADDNLPRLARRLESDAINELNLFLASVYRLGYHKLLIYPFRPSVHRSPRARTPR
Ga0307292_102112582	3300028811	Soil	RLISLDTTPARLHDALQKHPSTQNLRRYADDDLPRLARRLESDETNELDLFLACVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0222749_102279091	3300029636	Soil	LDTTPARLRDSLQKHPSTQNLRRWSDDDLPRLSRRLESDATNELDLFLARVYRLGHHKLLIYPFRPSVHRSPRAQQPEVK
Ga0308196_10032733	3300030989	Soil	EELCDWRDSIVHKINIVRLINLDTVPARLHDSLQKHPSTQKLRRYADDNLPRLARRLESDAINELNLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0308187_100434431	3300031114	Soil	RRALEELCDWRDSIVHKINIVRLINLDTVPARLHDSLQKHPSTQNLRRYADDNLPRLARRLESDAINELNLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0170824_1000359463	3300031231	Forest Soil	INLETTPARLHDSLQKHPSTQTLRRYADNNLPRLSRRLESDATNELDLFLAKVYRLGHHKLLVYPFRPSVHRSHRASSPT
Ga0318528_103114822	3300031561	Soil	TPARLREWLQKHPSTQKLRRYDDDDLPRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0307476_104051793	3300031715	Hardwood Forest Soil	KDRQALEELCDWRDSIVHKISIVRLVNLDTTPARLHEWLQKHPSTQNLRRYDDDNLPRLARRLESDATNELDLFLASVYRLGYHKMLVYPFRPSVHRSPRASTPT
Ga0310813_102807773	3300031716	Soil	INLDTTPARLHDSLQKHPSTQNLRRWADDDLPRLSRRLESDATNELDLFLACVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0318492_103033031	3300031748	Soil	IVHKIGAVRLIKLDTTPARLHDWLQKHPSTQNRRRYADNDLLRLARRLESDATHELDLFLDSVYRLGYRKLLIYPFRPSVHRSPRASTST
Ga0318546_102835271	3300031771	Soil	HKISILRLINLDTTPERLRDSLQRHSSTRNQRRYADGNLARLARRLESDATNELDLFLAKVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0318498_101062191	3300031778	Soil	TPARLHDWLQKHPSTQNRRRYADNDLLRLARRLESDATHELDLFLDSVYRLGYRKLLIYPFRPSVHRSPRASTST
Ga0318568_104179612	3300031819	Soil	EELCDWRDSIVHKISIVRLINLDTTPARLREWLQKHPSTQNLRRFADHDLPRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0307473_111143551	3300031820	Hardwood Forest Soil	WRDSIVHKINIVRLINLETTPARLHDALQKHPSTQNLRRYADDDLPRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0318511_102282212	3300031845	Soil	VKDRRALEELCDWRDSIVHKISIVRLINLDTTPARLREWLQKHPSTQNLRRFADDDLPRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0318527_105350291	3300031859	Soil	RDSIVHKISILRLINLDTTPERLRDSLQRHSSTRNQRRYADGNLARLARRLESDATNELDLFLAKVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0318495_104130721	3300031860	Soil	IKLDTTPARLHDWLQKHPSTQNRRRYADNDLLRLARRLESDATHELDLFLDSVYRLGYRKLLIYPFRPSVHRSPRASTST
Ga0318520_101445791	3300031897	Soil	TELCDWRDSIVHKIGAVRLIKLDTTPARLHDWLQKHPSTQNRRRYADNDLPRLARRLESDATHELDLFLDSVYRLGYRKLLIYPFRPSVHRSPRASTST
Ga0310913_106354302	3300031945	Soil	GIVRLINLDTTPARLRDSLQKHPSTRNLRRYADDDLPRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0307479_105251403	3300031962	Hardwood Forest Soil	DQVKGQIKDRRAREELCDWRDSIVHKIGIVRLINLDTTPARLHDSLQKHPSTQNLRRWSDDDLPRLSRRLESDATNELDLFLARVYRLGHHKLLIYPFRPSVHRSPRAQQPEVK
Ga0318563_101403411	3300032009	Soil	ISIVRLINLDTTPARLREWLQKHPSTQKLRRYDDDDLPRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0318563_101805833	3300032009	Soil	GAVRLIKLDTTPARLHDWLQKHPSTQNRRRYADNDLPRLARRLESDATHELDLFLDSVYRLGYRKLLIYPFRPSVHRSPRASTST
Ga0318563_102905161	3300032009	Soil	GDWRDSIVHKIGIVRLINLDTTPARLRDSLQKHPSTQNLRRYADDDLPRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRLSVQRSPRASSPT
Ga0318559_104807442	3300032039	Soil	ERLRDSLQRHSSTRNQRRYADGNLARLARRLESDATNELDLFLAKVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0318506_102433612	3300032052	Soil	VKDRRALEELCDWRDSIVHKISIVRLINLDTTPARLREWLQKHPSTQKLRRYDDDDLPRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0318525_103439481	3300032089	Soil	ISIVRLINLDTTPARLREWLQKHPSTRNLRRFADDDLPRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0318577_104551981	3300032091	Soil	SIVHKIGAVRLIKLDTTPARLHDWLQKHPSTQNRRRYADNDLLRLARRLESDATHELDLFLDSVYRLGYRKLLIYPFRPSVHRSPRASSPT
Ga0335073_115035751	3300033134	Soil	RAREELCDWRDSIVHKISIVRLINLDTTPARLQDSMQQHPSTQNLRRYAAADPLRLARRLESDATNELDLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR
Ga0335077_109851932	3300033158	Soil	SIVHKIGIVRLINLDTTPARLHDSLQQHPSTQNLRRYADDELPRLARRLESDAINELDLFLAAVYRLGYHKLLIYPFRPSVHRSPRASSPT
Ga0370548_086449_284_616	3300034644	Soil	VKGRIKDRQALEELCDWRDSIVHKINIVRLINLDTVPARLHDSLQKHPSTQNLRRYADDNLPRLARRLESDAINELNLFLASVYRLGYHKLLIYPFRPSVHRSPRASTPR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086119

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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