Basic Information | |
---|---|
Family ID | F086118 |
Family Type | Metagenome |
Number of Sequences | 111 |
Average Sequence Length | 46 residues |
Representative Sequence | MVKLFFLCRRRPDLTHDRYVERLLGGHVPLALRHHPTLRRYVVN |
Number of Associated Samples | 100 |
Number of Associated Scaffolds | 111 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 67.27 % |
% of genes near scaffold ends (potentially truncated) | 98.20 % |
% of genes from short scaffolds (< 2000 bps) | 96.40 % |
Associated GOLD sequencing projects | 97 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.40 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Bacteria (99.099 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (13.514 % of family members) |
Environment Ontology (ENVO) | Unclassified (25.225 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (39.640 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70. |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 33.33% β-sheet: 0.00% Coil/Unstructured: 66.67% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.40 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
⦗Top⦘ |
Visualization |
---|
Wetland Sediment Freshwater Sediment Freshwater Seawater Hot Spring Sediment Watersheds Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Grasslands Soil Peatlands Soil Soil Soil Grasslands Soil Soil Soil Hardwood Forest Soil Soil Soil Peatland Tropical Peatland Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Arabidopsis Rhizosphere Switchgrass Rhizosphere Arabidopsis Thaliana Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere |
Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
---|---|
|
|
Zoom: | Powered by OpenStreetMap |
⦗Top⦘ |
Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI1027J12803_1048284473 | 3300000955 | Soil | MPKLVFLCRRRPDLTHERYAELLLRGHVPLALRHHPTMRKYVVNVVEGL |
F14TB_1012841891 | 3300001431 | Soil | MVKLIFLCRRRPDLTHEQYVERLLQGHVPLALRHHPTMRGYVVNV |
Ga0063356_1055274372 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MVKLIFLCRRRPDITHERYAALLLEGHVPIALRHHPTMRRYTVNI |
Ga0062591_1017092231 | 3300004643 | Soil | MVKMMFLCRRRPDVDHARYVAMVLNDHVPLALRHHPTMRTYVVNVVDRSP |
Ga0062594_1001926211 | 3300005093 | Soil | MVKLIFLCRRRPEIGHDEYVERVLRGHVPLALRHHPTMLGYVVNIVEDTG |
Ga0066672_106432062 | 3300005167 | Soil | MVKLVFLCWRRPDISHERYVELLLRGHVPVALAHHPTLRRYVVNVVEGTREPAPALD |
Ga0066683_104835192 | 3300005172 | Soil | MVKLVFLCRRRPDLSHARYVELLLRGHVPIALAHHPTLRRYVVNVVEGTR |
Ga0066688_101273053 | 3300005178 | Soil | MVKLVFLCRQRSDLTHERYVARLLEGHVPLALRHHPTLRRY |
Ga0066685_102036601 | 3300005180 | Soil | MTKLFFLCHRRADLTHDEYAERLLGVHVPLALAHHPTLRRYVVNVV |
Ga0070676_102404751 | 3300005328 | Miscanthus Rhizosphere | MPKMIFLCRRRPDITHERYAELVLQGHVPLALRHHPTMRKYVVNVV |
Ga0070680_1009109101 | 3300005336 | Corn Rhizosphere | MVKLVFLCRRRADLTHERYAELLLGGHVPLALRHHPTMRKYVVNLVEGLRAGA |
Ga0070709_112099892 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | VVKLFFFCGRRDDLSHDAYAERLLHGHVPIALRHHPTLRRYTVNIVESS |
Ga0070700_1005602722 | 3300005441 | Corn, Switchgrass And Miscanthus Rhizosphere | MLKLFFFCRRRPDITRARYAELLLDGHVPIALEHHPTMRRYVVNIVEQSPSDWQEL |
Ga0070700_1012782912 | 3300005441 | Corn, Switchgrass And Miscanthus Rhizosphere | MVKLVFLCRRRPDITHETYVKRLLEGHVPLALRHHPTLRRYVVNVVEGTRGDV |
Ga0070708_1018766121 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | MTKLFFLCRRRADLTHEQYVERLIAGHVPLALAHHPTLRRYVVNVVE |
Ga0066681_108860302 | 3300005451 | Soil | MVKLVFLCRRRSDLTHGRYVARLLEGHVPLALRHHPTLRRY |
Ga0070707_1002888991 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | MVKLVFLCRRRPDLTHEQYVARLLEGHVPLALRHHPTLRRYVVNVVEGT |
Ga0070697_1001626712 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | MVKLFFLCRRRPDLTHDRYVERLLGGHVPLALRHHPTLRRYVVN |
Ga0070697_1010167341 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | MTKLFFLCRRRADLTHEQYVERLVAGHVPLALAHHPTLRRYVVNVVEGTR |
Ga0070696_1013026101 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | MVKLVFLCRRRPDITHARYVELLLGGHVPLALAHHQTMRRYVVNIV |
Ga0066701_102831843 | 3300005552 | Soil | MVKLVFLCRRRSDLTHERYVGRLLEGHVPLALRHHPTLRRYVVNIVE |
Ga0066701_108716492 | 3300005552 | Soil | MVKLVFLCRRRPDLSHARYVELLLRGHVPIALAHHPTLRRYVVNVV |
Ga0066704_102321171 | 3300005557 | Soil | MVKLVFLCRQRSDLTHERYVARLLEGHVPLALRHHPTLRRYVVNIVE |
Ga0066691_101418811 | 3300005586 | Soil | MVKLVFLCWRRPDISHERYVELLLRGHVPVALAHHPTLRRYVVNVVEGT |
Ga0068860_1008015172 | 3300005843 | Switchgrass Rhizosphere | MEKLIFLCRRRPNITHERYVELLLKGHVPIALQHHPTMRRYTVNIVEQGP |
Ga0075018_108164691 | 3300006172 | Watersheds | MVKLMFLCRRRPELTPAQYADRLLRGHVPLALRHHATMRGYVVNL |
Ga0070716_1005473331 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | MVKLVFLCRRRPDVTHEQYVDMLLHGHVPLALAHHPTLRRYVVNVVEATR |
Ga0070712_1013355832 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | MHKLIFLCRRRSDETHERYVDWLLGEHVPLALRHHPMLRRYVVNVV |
Ga0066665_116824322 | 3300006796 | Soil | MTKLFFLCHRRAALTHDEYAERLLGGHVPLALAHHPTLRRYVVNVVEGTR |
Ga0066659_105918922 | 3300006797 | Soil | MLKMIFLCRRRPDATHERYVDWLLGEHVPLALRHHPTLRRYVVNVVEGT |
Ga0075425_1015688361 | 3300006854 | Populus Rhizosphere | MMKLVFLCRRRPDLTHPEYAAHLLERHVPLALRHHPTLRRYVVN |
Ga0099828_107701522 | 3300009089 | Vadose Zone Soil | MVKLVFLCRRRPDITHERYAELLLRGHVPLALRHHPALRRYVV |
Ga0099827_106422471 | 3300009090 | Vadose Zone Soil | MVKLVFLCWRKPDLSHARYVELLLRGHVPIALSHHPTLRRYVVNVVEGTRGAGLEP |
Ga0115026_107249321 | 3300009111 | Wetland | LHVRGVVKLIFFCRRRPDLSHGRYAELLLLGHVPLALRHHPAMRGYI |
Ga0066709_1015815932 | 3300009137 | Grasslands Soil | MTKLFFLCRRRAELTHEQYVERLIAGLVPLALAHHPTLRRYVVNVVEGTRGPAP |
Ga0105248_114370332 | 3300009177 | Switchgrass Rhizosphere | MTKLIFLCRRRPDITHERYAELVLQGHVPLALRHHP |
Ga0126373_123409331 | 3300010048 | Tropical Forest Soil | MVKLIFLCRRRPDLTHDQYVERVLQGHVPLALRHHPAMRGYVVNVVENTGA |
Ga0134070_104739252 | 3300010301 | Grasslands Soil | MTKLFFLCRRRGDLTHDEYVERLLGGHVPLALAHHPTLR |
Ga0134086_100926663 | 3300010323 | Grasslands Soil | MVKVVFLCRRRSDLTHERYVARLLEGHVPLALRHHPTLRRYVVN |
Ga0134086_101170491 | 3300010323 | Grasslands Soil | MVKLVFLCRRRSDLTHGRYVARLLEGHVPLALRHHPT |
Ga0134064_100313901 | 3300010325 | Grasslands Soil | MVKVVFLCRRRSDLTHERYVARLLEGHVPLALRHHPT |
Ga0134065_102249471 | 3300010326 | Grasslands Soil | MVKLVFLCRRRSDLTHGRYVARLLEGHVPLALRHHPTLRRYVVNIVEGTRG |
Ga0134063_100637724 | 3300010335 | Grasslands Soil | MVKVVFLCRRRSDLTHERYVARLLEGHVPLALRHHPTLRRYVVNIVE |
Ga0126370_109634322 | 3300010358 | Tropical Forest Soil | MVKLVFLCRRRPDLTHEHYVERLLRGHVPIALAHH |
Ga0126378_134063811 | 3300010361 | Tropical Forest Soil | MVKLIFLCRRRPDITHERYADLLLNGHVPIALRHHPTLRRYTVNI |
Ga0134066_103145292 | 3300010364 | Grasslands Soil | MVKLVFLCRRRSDLTHERYVERLLGGHVPLAIRRHPTL |
Ga0136847_106731754 | 3300010391 | Freshwater Sediment | VKLVFLCRRRPDLTAARYTERLLHGHVPLALRHHPTLAKYVVNLV |
Ga0134124_120214342 | 3300010397 | Terrestrial Soil | MVKLVFLCRRRPDVTHEQYVDMLLHGHVPLALAHHSTLRR |
Ga0134123_103794501 | 3300010403 | Terrestrial Soil | VIMVKLIFLCRRRPDLTHERYGELLLGGHVPLALRHHPTMRKYVVNLVEGLRAG |
Ga0137382_101497821 | 3300012200 | Vadose Zone Soil | MVKLVFLCRRRPDITHERYAELLLRGHVPLALRHHPTLRRYVVNIVDDT |
Ga0137379_112430302 | 3300012209 | Vadose Zone Soil | MVKLVFLCRRRPHITHERYAELLLGGHVPLALRHHPTLRRYVVNIVE |
Ga0137394_115350161 | 3300012922 | Vadose Zone Soil | MVKLVFLCWRRPDISHERYVDLLLRGHVPIALAHHPTLRRYVVNVVEGTREPAPALD |
Ga0137413_107615891 | 3300012924 | Vadose Zone Soil | MVKLLFLCRRRDGLSHPEYVERLRGRHVPLALRHHPTLRRY |
Ga0137404_117806931 | 3300012929 | Vadose Zone Soil | MEPVVKLFFLCRRKDGLSHEAYAERLLRGHVPIALRHHPTLRRYTVNVVES |
Ga0137407_106597141 | 3300012930 | Vadose Zone Soil | MVKLVFLCWRRPDISHERDVELLLRGHVPVALAHHP |
Ga0134081_100074941 | 3300014150 | Grasslands Soil | MVKLVFLCRRRPDLTHERYVELLLGGHVPLALRHHPALRRYVVNI |
Ga0134078_102364641 | 3300014157 | Grasslands Soil | MTKLFFLCRRRGDLTHDEYVERLLGGHVPLALAHHPT |
Ga0157379_106736892 | 3300014968 | Switchgrass Rhizosphere | MEKLIFLCRRRPNITHERYVELLLKGHVPIALQHHPTMRRYTVNIVEQGPP |
Ga0132255_1017584192 | 3300015374 | Arabidopsis Rhizosphere | MVKLIFLCRRRPDLTHEQYVERLLEGHVPLALHHHPTMRGYVVNVVEQTGAGL |
Ga0134069_13027161 | 3300017654 | Grasslands Soil | MVKLVFLCWRRPDISHERYVELLLRGHVPVALAHHPTLRRYVLNVVEGTREPAPALDS |
Ga0187779_111967881 | 3300017959 | Tropical Peatland | MVKLIFLCRRRSDISHERYAELLLQGHVPLALEHHPTLR |
Ga0187773_102321013 | 3300018064 | Tropical Peatland | MVKLIFFCRRRRDISHARYTELLLTGHVPVALKHHPLMQRY |
Ga0066655_102568571 | 3300018431 | Grasslands Soil | MTKLFFLCHRRADLTHDEYAERLLGGHVPLALAPHPALRRYVVNVVEG |
Ga0066667_122484752 | 3300018433 | Grasslands Soil | MVKLVFLCRRRPDITHERYAELLLRGHVPLALRHHPTLRRSVVNIVQDT |
Ga0066662_128295403 | 3300018468 | Grasslands Soil | MVKLVFLCRQRSDLTHERYVARLLEGHVPLALRHHPTLRRYVVNIVEGTRGPAPPLDS |
Ga0210384_101536234 | 3300021432 | Soil | MVKLVFLCRRRSDLTHEQYVERLLGGHVALALRHHPTLRRYVVNIVEGTRGPTPALD |
Ga0209172_101671192 | 3300025310 | Hot Spring Sediment | MPKLVFLCRRRPDITHERYADLLLRGHVPLALRHHPT |
Ga0207684_115890351 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | MVKLIFLCRRRPDITHERYAELLLHGHVPLALRHHPTMRRYTVNIVDQGRPDEEALD |
Ga0207681_103027042 | 3300025923 | Switchgrass Rhizosphere | MVKLIFLCRRRPEIGHDEYVERVLRGHVPLALRHHPTMLGYVVNIVEDTGA |
Ga0207668_121538822 | 3300025972 | Switchgrass Rhizosphere | MRRMVKLIFLCRRRPDITHERYAELLLDGHVPIALQH |
Ga0207658_104566292 | 3300025986 | Switchgrass Rhizosphere | MRRMVKLIFLCRRRPDITHERYAELLLDGHVPIALQHHPTLRRYTVNIVERGPDS |
Ga0209761_13234451 | 3300026313 | Grasslands Soil | MVKLVFLCRRRSDLTHERYVARLLEGHVPLALRHHPTLRRYVVNI |
Ga0209267_11415732 | 3300026331 | Soil | MTKLFFLCRRRAELTHEQYVERLIAGHVPLALAHHP |
Ga0209158_12363982 | 3300026333 | Soil | MVKLVFLCWRRPDISHERYVELLLRGHVPVALAHHPTLRRYVVNVVEGTR |
(restricted) Ga0255058_103929622 | 3300027872 | Seawater | MLFLCRRRSGLTHDEYAHRVLQGHVPLALRHHPTLRHY |
Ga0268264_104756201 | 3300028381 | Switchgrass Rhizosphere | MEKLIFLCRRRPNITHERYVELLLKGHVPIALQHHPTMRRYTVNIVEQGPPSED |
Ga0268264_109755352 | 3300028381 | Switchgrass Rhizosphere | MRRMVKLIFLCRRRPDITHERYAELLLDGHVPIALQ |
Ga0265318_101220921 | 3300028577 | Rhizosphere | MRKLIFLCHRRPDITHERYTEQLLKSHIPIALEHHP |
Ga0247822_114989692 | 3300028592 | Soil | MVKLLFLCRRRSDITHERYARLLLEGHVPLALRHHPTMQRYAVNIV |
Ga0247826_107402851 | 3300030336 | Soil | MTKLIFLCRRRPDITHERYAELVLGGHVPLALRHHPTMRKYVVNVVEGFRAGA |
Ga0247826_111628692 | 3300030336 | Soil | MVKLIFLCRRRPDIGHDEYVERVLRGHVPLALRHHPTMLG |
Ga0318573_105662841 | 3300031564 | Soil | MVKLIFLCRRRPDLTHDQYVERVLQGHVPLALRHHPAMRGYVVNVVEDAG |
Ga0318561_104225201 | 3300031679 | Soil | MVKLIFLCRRRPDLTHDQYVERVLQGHVPLALRHHP |
Ga0318561_106205342 | 3300031679 | Soil | MVKLIFLCRRRPDLTHEQYVERVLQGHVPLALRHHPSMR |
Ga0318560_103854782 | 3300031682 | Soil | VVKLIFLCRRRPDLTHEQYVERVLRGHAPLALRHHPTMRGY |
Ga0318496_103510532 | 3300031713 | Soil | MVKLIFLCRRRPDLTHDQYVERVLQGHVPLALRHHPAMRGYVVNVV |
Ga0307469_106370231 | 3300031720 | Hardwood Forest Soil | VVKLFFFCGRRDDLSHDAYAEQLLRGHVPIALRHHPTLRRYTVN |
Ga0315907_106638442 | 3300031758 | Freshwater | VRKLVFLCRRRPDLARAEYARRLLRGHVPLALRHHPTLRRYVVNVVESAAVPGSSPLD |
Ga0318509_101317751 | 3300031768 | Soil | MVKLIFLCRRRPDLTHDQYVERVLQGHVPLALRHHPTM |
Ga0318521_107163311 | 3300031770 | Soil | MVKLIFLCRRRLDLTHDQYVERVLQGHVPLALRHHPAMRGYVVNVVEDAGAGL |
Ga0318566_102874481 | 3300031779 | Soil | MVKLLFLCRRRPDIDHDRYVALLLGGHVPIALRHHPTMRKYVVNVVERAQDGLP |
Ga0318550_106083892 | 3300031797 | Soil | MVKLLFLCRRRPDIDHDRYVALLLGGHVPIALRHHPTMRKYVVNVVERGQPV |
Ga0318497_103821582 | 3300031805 | Soil | MVKLIFLCRRRPDLTHDQYVERVLQGHVPLALRHHPTMRGYVVNVV |
Ga0307473_101628972 | 3300031820 | Hardwood Forest Soil | MVRLVFLCRRRPDIGHDRYVECLLHGHVPIALAHHPTLRRYVVNVVEE |
Ga0307473_105686271 | 3300031820 | Hardwood Forest Soil | VVKLFFFCGRRDDLSHDAYAEQLLRGHVPIALRHHPTLRRYTVNIVESSSPGSPPV |
Ga0310893_103838871 | 3300031892 | Soil | MPKLIFLCRRRPDITHERYAELVLGGHVPLALRHH |
Ga0318551_103486131 | 3300031896 | Soil | MVKLLFLCRRRPDIDHDRYVALLLGGHVPIALRHHPT |
Ga0306926_115672052 | 3300031954 | Soil | MVKLIFLCRRRPDLTHDQYVERVLQGHVPLALRHHPAMRGYVVNVVEDTGAGLEP |
Ga0306922_112412902 | 3300032001 | Soil | MVKLIFLCRRRPELTSEQYAERLLRGHVPLALRHHHPAM |
Ga0318570_104311432 | 3300032054 | Soil | VVKLIFLCRRRPDLTHEQYVERVLRGHVPLALRHHPTMRGYVVNVVEEASAGLE |
Ga0318575_104583232 | 3300032055 | Soil | VVKLIFLCRRRPDLTHEQYVERVLRGHVPLALRHHPTMRGYVVNVVEEAGA |
Ga0318525_107192301 | 3300032089 | Soil | MVKLIFLCRRRPDLTHDQYVERVLQGHVPLALRHHPAMRGYVVNVVED |
Ga0310895_107307471 | 3300032122 | Soil | MVKMMFLCRRRPDVDHARYVAMVLSDHVPLALRHHPTMRTYVVNVVDRSPTGWPE |
Ga0311301_100916011 | 3300032160 | Peatlands Soil | MATIPMVKLIFLCRRRPDITHAHYAERLLSGHVPIAL |
Ga0315276_103451502 | 3300032177 | Sediment | VVKLVFLCRRRADLTHDRYAELVLDGHVPLALRHHPAMRK |
Ga0307471_1024220102 | 3300032180 | Hardwood Forest Soil | MVKLCFLCRRRPDITHEIYVRRLLDGHVPIALRHHPTLRRYTVNIVETPHAG |
Ga0307471_1036731612 | 3300032180 | Hardwood Forest Soil | MRRMVKLIFLCRRRPDITHERYTELLLDGHVPIALQHHPT |
Ga0307471_1043057272 | 3300032180 | Hardwood Forest Soil | MRKLIFLCRRRADIDHQQYAKLLVEGHIPIALKHHPA |
Ga0307471_1043594451 | 3300032180 | Hardwood Forest Soil | MEKLIFLCRRRPDITHERYADLLLGGHVPLALRHHPAMQGYVV |
Ga0335069_121194482 | 3300032893 | Soil | MVKLVFLCRRRPDIDHARYAELLLHGHVPLALRHHPTLRRYVVNVVEQG |
Ga0314863_143382_334_513 | 3300033804 | Peatland | LTASQRFRQSQGMVKLIFLCRRRPDLTHEQYVERLRRGHVPIALRHHPAMRRYTVNIVDQ |
⦗Top⦘ |