Metagenome / Metatranscriptome Family F086097

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F086097
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	69 residues
Representative Sequence	VAEKVKKPREVATADLIQQYEGKLALLKTWESLPAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI
Number of Associated Samples	106
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.08 %
% of genes near scaffold ends (potentially truncated)	21.62 %
% of genes from short scaffolds (< 2000 bps)	89.19 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (58.559 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (28.829 % of family members)
Environment Ontology (ENVO)	Unclassified (36.937 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.541 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 68.12% β-sheet: 0.00% Coil/Unstructured: 31.88%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF04355	SmpA_OmlA	0.90
PF16697	Yop-YscD_cpl	0.90
PF02633	Creatininase	0.90
PF00486	Trans_reg_C	0.90
PF08843	AbiEii	0.90
PF02803	Thiolase_C	0.90
PF00011	HSP20	0.90
PF04226	Transgly_assoc	0.90
PF13884	Peptidase_S74	0.90
PF01370	Epimerase	0.90
PF00326	Peptidase_S9	0.90
PF09954	DUF2188	0.90
PF01569	PAP2	0.90
PF12681	Glyoxalase_2	0.90
PF00440	TetR_N	0.90
PF02518	HATPase_c	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.90
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.90
COG1402	Creatinine amidohydrolase/Fe(II)-dependent FAPy formamide hydrolase (riboflavin and F420 biosynthesis)	Coenzyme transport and metabolism [H]	0.90
COG2253	Predicted nucleotidyltransferase component of viral defense system	Defense mechanisms [V]	0.90
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.90
COG2913	Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex	Cell wall/membrane/envelope biogenesis [M]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.56 %
Unclassified	root	N/A	41.44 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.56 %
Unclassified	root	N/A	41.44 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.56 %
Unclassified	root	N/A	41.44 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.44 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	29.73 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.70 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.44 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	29.73 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.70 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.44 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	21.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.90 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.44 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	20.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.90 %
Verrucomicrobia bacterium 13_2_20CM_55_10	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_55_10	0.90 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.44 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	20.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.90 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.90 %
Verrucomicrobia bacterium 13_2_20CM_55_10	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_55_10	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.44 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	20.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	0.90 %
Rhodococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus	0.90 %
Verrucomicrobia bacterium 13_2_20CM_55_10	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_55_10	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.44 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	20.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
unclassified Rhodococcus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus	0.90 %
unclassified Candidatus Udaeobacter	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter	0.90 %
Verrucomicrobia bacterium 13_2_20CM_55_10	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_55_10	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.44 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	20.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Rhodococcus sp. LB1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus → Rhodococcus sp. LB1	0.90 %
Candidatus Udaeobacter sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	0.90 %
Verrucomicrobia bacterium 13_2_20CM_55_10	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_55_10	0.90 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459003\|FZ032L002IE1HG	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	527	Open in IMG/M
2170459006\|GBPF9FW01B1NZW	Not Available	514	Open in IMG/M
2170459008\|GA8OVOZ02I9MTW	Not Available	514	Open in IMG/M
2170459009\|GA8DASG01C6BSK	Not Available	563	Open in IMG/M
2170459009\|GA8DASG01D4S3W	Not Available	525	Open in IMG/M
2170459009\|GA8DASG02FSCLU	Not Available	560	Open in IMG/M
2170459009\|GA8DASG02IQ5A3	Not Available	530	Open in IMG/M
2170459010\|GIO7OMY02GYRB2	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	518	Open in IMG/M
2170459011\|GKWS7RC01CDOVF	Not Available	539	Open in IMG/M
2209111022\|2221212309	Not Available	847	Open in IMG/M
3300004114\|Ga0062593_103281626	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300004480\|Ga0062592_102358754	Not Available	533	Open in IMG/M
3300005166\|Ga0066674_10500632	Not Available	547	Open in IMG/M
3300005178\|Ga0066688_10645544	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	678	Open in IMG/M
3300005332\|Ga0066388_100523692	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1818	Open in IMG/M
3300005435\|Ga0070714_100469032	All Organisms → cellular organisms → Bacteria	1198	Open in IMG/M
3300005439\|Ga0070711_101351408	Not Available	619	Open in IMG/M
3300005467\|Ga0070706_100287522	All Organisms → cellular organisms → Bacteria	1534	Open in IMG/M
3300005468\|Ga0070707_101063961	Not Available	775	Open in IMG/M
3300005536\|Ga0070697_100143032	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2012	Open in IMG/M
3300005540\|Ga0066697_10547599	Not Available	649	Open in IMG/M
3300005559\|Ga0066700_10872214	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	600	Open in IMG/M
3300005764\|Ga0066903_107421350	Not Available	566	Open in IMG/M
3300005938\|Ga0066795_10200079	Not Available	594	Open in IMG/M
3300006173\|Ga0070716_100311277	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300006175\|Ga0070712_100434174	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1091	Open in IMG/M
3300006176\|Ga0070765_101710781	Not Available	591	Open in IMG/M
3300006796\|Ga0066665_10822763	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	729	Open in IMG/M
3300006797\|Ga0066659_10439061	Not Available	1035	Open in IMG/M
3300007255\|Ga0099791_10016632	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3132	Open in IMG/M
3300009012\|Ga0066710_103557166	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	588	Open in IMG/M
3300009088\|Ga0099830_11009524	Not Available	689	Open in IMG/M
3300009137\|Ga0066709_100654476	All Organisms → cellular organisms → Bacteria	1505	Open in IMG/M
3300010159\|Ga0099796_10182331	Not Available	843	Open in IMG/M
3300010360\|Ga0126372_12842002	Not Available	536	Open in IMG/M
3300011003\|Ga0138514_100022807	Not Available	1136	Open in IMG/M
3300011269\|Ga0137392_10775623	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	792	Open in IMG/M
3300012198\|Ga0137364_11105021	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	597	Open in IMG/M
3300012199\|Ga0137383_10835118	Not Available	672	Open in IMG/M
3300012201\|Ga0137365_10038583	All Organisms → cellular organisms → Bacteria	3648	Open in IMG/M
3300012202\|Ga0137363_10722036	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300012203\|Ga0137399_10430024	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1103	Open in IMG/M
3300012203\|Ga0137399_11641932	Not Available	531	Open in IMG/M
3300012208\|Ga0137376_11440592	Not Available	580	Open in IMG/M
3300012350\|Ga0137372_10048359	All Organisms → cellular organisms → Bacteria	3774	Open in IMG/M
3300012351\|Ga0137386_10981653	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300012353\|Ga0137367_10364830	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300012357\|Ga0137384_10280445	Not Available	1388	Open in IMG/M
3300012358\|Ga0137368_10224839	All Organisms → cellular organisms → Bacteria	1315	Open in IMG/M
3300012360\|Ga0137375_10006675	All Organisms → cellular organisms → Bacteria	13697	Open in IMG/M
3300012361\|Ga0137360_10513327	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300012685\|Ga0137397_11324621	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	511	Open in IMG/M
3300012918\|Ga0137396_10500007	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	901	Open in IMG/M
3300012918\|Ga0137396_10775871	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_55_10	705	Open in IMG/M
3300012924\|Ga0137413_10206498	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1324	Open in IMG/M
3300012927\|Ga0137416_10816911	Not Available	825	Open in IMG/M
3300012944\|Ga0137410_10614115	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300012971\|Ga0126369_11599050	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300012989\|Ga0164305_10837865	Not Available	766	Open in IMG/M
3300015241\|Ga0137418_10029952	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5042	Open in IMG/M
3300015242\|Ga0137412_10331761	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1187	Open in IMG/M
3300015245\|Ga0137409_10906314	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	718	Open in IMG/M
3300018027\|Ga0184605_10357305	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	659	Open in IMG/M
3300018061\|Ga0184619_10281535	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	763	Open in IMG/M
3300018071\|Ga0184618_10448123	Not Available	543	Open in IMG/M
3300018072\|Ga0184635_10007403	All Organisms → cellular organisms → Bacteria	3668	Open in IMG/M
3300018433\|Ga0066667_10186393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus → Rhodococcus sp. LB1	1509	Open in IMG/M
3300018468\|Ga0066662_11742557	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300019869\|Ga0193705_1089454	Not Available	580	Open in IMG/M
3300019878\|Ga0193715_1061327	Not Available	799	Open in IMG/M
3300019880\|Ga0193712_1010800	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1869	Open in IMG/M
3300019881\|Ga0193707_1015285	All Organisms → cellular organisms → Bacteria	2573	Open in IMG/M
3300019999\|Ga0193718_1124282	Not Available	508	Open in IMG/M
3300020001\|Ga0193731_1008959	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2559	Open in IMG/M
3300020002\|Ga0193730_1121341	Not Available	715	Open in IMG/M
3300020004\|Ga0193755_1158616	Not Available	681	Open in IMG/M
3300020199\|Ga0179592_10058930	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1752	Open in IMG/M
3300021080\|Ga0210382_10025864	All Organisms → cellular organisms → Bacteria	2165	Open in IMG/M
3300021411\|Ga0193709_1040626	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1100	Open in IMG/M
3300021413\|Ga0193750_1052526	Not Available	849	Open in IMG/M
3300024288\|Ga0179589_10251037	Not Available	786	Open in IMG/M
3300024347\|Ga0179591_1051209	All Organisms → cellular organisms → Bacteria	3628	Open in IMG/M
3300025910\|Ga0207684_11221660	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300026359\|Ga0257163_1023233	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300026374\|Ga0257146_1053328	Not Available	655	Open in IMG/M
3300026377\|Ga0257171_1088917	Not Available	546	Open in IMG/M
3300026496\|Ga0257157_1076482	Not Available	576	Open in IMG/M
3300026514\|Ga0257168_1102350	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300026530\|Ga0209807_1244941	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	607	Open in IMG/M
3300026548\|Ga0209161_10031603	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3645	Open in IMG/M
3300026551\|Ga0209648_10301412	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1146	Open in IMG/M
3300026557\|Ga0179587_10501444	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	796	Open in IMG/M
3300026734\|Ga0208211_101079	Not Available	884	Open in IMG/M
3300026920\|Ga0208575_1009780	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	923	Open in IMG/M
3300027605\|Ga0209329_1058795	Not Available	824	Open in IMG/M
3300027684\|Ga0209626_1027753	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1374	Open in IMG/M
3300028536\|Ga0137415_10429488	All Organisms → cellular organisms → Bacteria	1126	Open in IMG/M
3300028711\|Ga0307293_10197203	Not Available	641	Open in IMG/M
3300028807\|Ga0307305_10090646	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1413	Open in IMG/M
3300028884\|Ga0307308_10191580	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	979	Open in IMG/M
3300028906\|Ga0308309_10210076	Not Available	1609	Open in IMG/M
3300030844\|Ga0075377_11659872	Not Available	580	Open in IMG/M
3300030855\|Ga0075374_11337658	Not Available	504	Open in IMG/M
3300030916\|Ga0075386_10008967	All Organisms → cellular organisms → Bacteria	1336	Open in IMG/M
3300030945\|Ga0075373_11598283	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300030966\|Ga0075383_10619766	Not Available	733	Open in IMG/M
3300031057\|Ga0170834_107197025	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300031128\|Ga0170823_14486262	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300031469\|Ga0170819_12996339	Not Available	671	Open in IMG/M
3300031754\|Ga0307475_11445324	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	529	Open in IMG/M
3300033412\|Ga0310810_10531848	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1156	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.50%
Aquatic	Environmental → Aquatic	4.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.59%
Sediment	Environmental → Aquatic → Sediment	3.60%
Freshwater	Environmental → Aquatic → Freshwater	0.90%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.28%
Loam	Environmental → Terrestrial → Soil → Loam	14.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.60%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.90%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.90%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	45.05%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	19.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.21%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.21%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.60%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.90%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.90%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	28.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.01%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	8.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.21%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.50%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.60%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.60%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.80%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.90%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.90%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.90%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459006	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm	Environmental	Open in IMG/M
2170459008	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
2170459011	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect Gram positive lysis 0-10cm	Environmental	Open in IMG/M
2209111022	Grass soil microbial communities from Rothamsted Park, UK - Chitin enrichment	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005938	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300019880	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a1	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300021413	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026734	Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN393 (SPAdes)	Environmental	Open in IMG/M
3300026920	Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN397 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030844	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030855	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030945	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030966	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB4 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4A_00700590	2170459003	Grass Soil	VAEKVKKPREVATADRIQQYEGKLALLKTWESLPAEIQENDYIIALKSRLRQVRNYLLRRKDPIANI
L01_07402670	2170459006	Grass Soil	RELATADLIQQYEGKLALLQTWESLPAETRLQENDYIIALKSRLRHVRNYLLHRKDRIAN
F48_05292720	2170459008	Grass Soil	MAKKVKKPRELATADLIQQYEGNLALLQTWESLRAETRLQENDYIIALKSRLRHVRNYLLHRKDPIANI
F47_07201620	2170459009	Grass Soil	VKKPRELATADLIQQYEGKLALLQTWESLRAETRLQENDYIIALKSRLRHVRNYLLHRKDRIANI
F47_03486860	2170459009	Grass Soil	MAKKVKKPRELATADRIQQYEGKLALLKTWESLPAETQLQEDDYIIALKSRLRHVRNYLLHRKDPIANI
F47_10389820	2170459009	Grass Soil	KKPRELATADLIQQYEGKLALLQTWESLRAETRLQENDYIIALKSRLRHVRNYLLHRKDRIANI
F47_09083540	2170459009	Grass Soil	MAKKVKKPRELATADLIQQYEGKLALLQTWESLPAETRLQENDYIIALKSRLRHVRNYLLHRKDRIANI
F62_03496610	2170459010	Grass Soil	LAKEVKKPREVATADRIQQYEGKLALLKTWESLPAETQLQENDYIIALKSRLRHVRNYLLHRKDRIANI
F64_01243330	2170459011	Grass Soil	MAKKVKKPRELATADLIQQYEGKLALLQIWESLRAETRLQENDYIIALKSRLRHVRSYLL
2222052503	2209111022	Grass Soil	MAKKVKKPRELATADLIQQYEGKLALLQTWESLRAETQLQENDYIIALKSRLRQVRNYLLHRKDPIANI
Ga0062593_1032816261	3300004114	Soil	PRELATADLIQQYEGKLALLQTWESLRAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI*
Ga0062592_1023587541	3300004480	Soil	PRELATADLIQQYEGKLALLKTWESLPAEIQENDYIIALKSRLRQVRNYLLRRKDPIANI
Ga0066674_105006321	3300005166	Soil	VAEKVKKPREVATADLIQLYEGKLALLKTWESLRAETQLQENDYIIALKSRLRQVRNYLLHRKDPIANI*
Ga0066688_106455441	3300005178	Soil	VAEKVKKPREVATADLIQQYEGKLALLKTWESLRAETQLQENGYIIALKSRLRQVRNYLLHRKDPIATI*
Ga0066388_1005236923	3300005332	Tropical Forest Soil	MGGSMWVSSSEMGVGEKVKKPKEMATADRIQQYEGKLALLQTWESLPGETQLQEHDYIMGLKSRLRQVRNYLLHRKDPTAHI*
Ga0070714_1004690322	3300005435	Agricultural Soil	VAEKVKKPREVATADLIQQYEGKLALLKTWESLPAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI*
Ga0070711_1013514082	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VKKTREVATADRIQQYEGKLALLKTWESLRAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI*
Ga0070706_1002875222	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VATADLIQQYEGKLALLKTWESLRAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI*
Ga0070707_1010639611	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VAEKVKKPREVATADLIQQYEGKLALLKTWESLRAETQLQENDYIIALKSRLRQVRNNLLHRKDPIANI*
Ga0070697_1001430324	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VAEKVKKPRGVATADLIQQYEGKLALLKTWESLRAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI*
Ga0066697_105475992	3300005540	Soil	VAKKVKTPREVATADRIQQYEGKLALLQTWESLPAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI*
Ga0066700_108722141	3300005559	Soil	GGDCVAEKVKKPREVATADLIQQYEGKLALLKTWESLRAETQLQENDYIIALKSRLRQVRNYLLHRKDPIANI*
Ga0066903_1074213502	3300005764	Tropical Forest Soil	MWVSSSEMGVGEKVKKPKEMATADRILQYEGKLALLQTWESLPGETQLQEHDYIMGLKSRLRQVRNYLLHRKDPTAHI*
Ga0066795_102000792	3300005938	Soil	VAEKVKKPREVATADLIQQYEGKLALLQTWESLRAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI*
Ga0070716_1003112773	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VAEKVKKPREVATADLIQQYEGKLALFKTWESLPAETQLQENDYIIALKSRLRHVRTYLLRRKDPIANI*
Ga0070712_1004341741	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VAKEVKKPREVATADRIQQYEGKLALLKTWESLPAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI*
Ga0070765_1017107812	3300006176	Soil	VAEKVKKPREVATADRIQQYEGKLALLKTWESLPAETQLQENDYIIALKSRLRHVRSYLLHRKDPIANI*
Ga0066665_108227632	3300006796	Soil	VAEKVKKPREVATADLIQQYEGKLALLKTWESLRAETQLQENDYIIALKSRLRQVRNYLLHRKDPIANI*
Ga0066659_104390612	3300006797	Soil	VAEKVKKPREVATADLIQQYEGKLALLKTWESLRAETQLQENDYIIALKSRLRQVRNYLL
Ga0099791_100166323	3300007255	Vadose Zone Soil	VAEKVKKPREVATADLIQRYEGKLALLQTWESLRAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI*
Ga0066710_1035571662	3300009012	Grasslands Soil	GDCVAKKMKQRREVATADRIQQYEGKLALLQTWESLPAVTQLQENDYIIALKSRLRHVRNYLLHRKDPIANI
Ga0099830_110095241	3300009088	Vadose Zone Soil	VAEKVKKPREVATAELIQQYEGKLALLQTWQSLRAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI*
Ga0066709_1006544761	3300009137	Grasslands Soil	VAEKVKKPREVATADLIQQYEGKLALLKTWESLRAETQLQENGYIIALKSRLRQVRNYLLHRKDPIANI*
Ga0099796_101823311	3300010159	Vadose Zone Soil	VAEKVKKPRELATADLIQQYEGKRALLKTWESLPAETQLQENDYIIALKSRLRQVRNYLLHRKDPIANI*
Ga0126372_128420021	3300010360	Tropical Forest Soil	MGVGEKVKKPKEMATADRIQQYEGKLALLQTWESLPGETQLQEHDYIIALKSRLRQVRNYLLHRKDRIANI*
Ga0138514_1000228071	3300011003	Soil	VAEKVKKPREVATADRIQQYEGKLALLKTWKSLPAETQLQENDYIIALKSRLRQVGNYLLRRKDPIANI*
Ga0137392_107756231	3300011269	Vadose Zone Soil	VGGDCVAEKVKKPREVATAELIQQYEGKLALLQTWQSLRAETQLQENDYILALKSRLRHVRNYLLHRKDPIANI*
Ga0137364_111050211	3300012198	Vadose Zone Soil	VAKKVKKPREVATADRIQQYEGKLALLQTWESLPAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI*
Ga0137383_108351181	3300012199	Vadose Zone Soil	VAEKVKKPREVATADRIQQYEGKLALLQTWESLRAETQLQENDYIIALKSRLRHVRSYLLHRKDPIANI*
Ga0137365_100385832	3300012201	Vadose Zone Soil	VAEKVKKTREVATADRIQQYEGKLALLKTWESLPAETQLQENDYIIALKSRLRHVRSYLLHRKDPIANI*
Ga0137363_107220362	3300012202	Vadose Zone Soil	VAEKVKKPREVATADLVQQYEGKLALLQTWESLRAETQLQENDYIIALKSRLRQVRNYLLRRKDPIANI*
Ga0137399_104300241	3300012203	Vadose Zone Soil	VAEKVKKPREAATADLIQQYEGKLALLQTWQSLHAETQLRENDYIITLKSRLRHVRNYLLHRKDPLANI*
Ga0137399_116419322	3300012203	Vadose Zone Soil	VAEKVKKPRELATADLIQQYEGKRALLKTWESLPAETQLQENDYIIALKSRLRQVRSYLLHRKDRIANI*
Ga0137376_114405921	3300012208	Vadose Zone Soil	VEKEVKKPREVATADRIQQYEGKLALLKTWESLPAKTQLQENDYIIALKSRLRHVRNYLLHRKDPIANI*
Ga0137372_100483597	3300012350	Vadose Zone Soil	VAKEVKKPREVATADRIQQYEGKLALLQTWESLPAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI*
Ga0137386_109816532	3300012351	Vadose Zone Soil	VAEKVKKTREVATADRIQQYEGKLALLKTWESLPAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI*
Ga0137367_103648302	3300012353	Vadose Zone Soil	VAKEVKKPREVATVDRIQQYEGKLALLKTWESLPAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI*
Ga0137384_102804452	3300012357	Vadose Zone Soil	VAKKVKKPREVATADRIQQYEGKLALLKTWESLPAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI*
Ga0137368_102248391	3300012358	Vadose Zone Soil	PREVATVDRIQQYEGKLALLKTWESLPAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI*
Ga0137375_1000667513	3300012360	Vadose Zone Soil	VAKEVKKPREVATVDRIQQYEGKLALLKTWESLPAETQLQENDYIIALKSRLRHVRNYLLHRKDTIANI*
Ga0137360_105133271	3300012361	Vadose Zone Soil	VAEKVKKPREVATADRIQQYEGKLALLKTWESLPAETQLQENDYIIALKSRLRHVRNYLLRRKDPIANI*
Ga0137397_113246212	3300012685	Vadose Zone Soil	ADLIQQYEGKRALLKTWESLPAETQLQENDYIIALKSRLRQVRSYLLHRKDRIANI*
Ga0137396_105000071	3300012918	Vadose Zone Soil	VAQKVKKPREVATADLIQQYEGKLALLQTWQSLRAETQLRENDYIITLKSRLRNVRNYLLHRKDPIANI*
Ga0137396_107758712	3300012918	Vadose Zone Soil	VAEKVKRPRELATADLIQQYEGKRALLKTWESLPAETQLQENDYIIALKSRLRQVRSYLLHRKDRIANI*
Ga0137413_102064983	3300012924	Vadose Zone Soil	VAEKVKKPRELATADLIQQYEGKRALLKTWESLPAETQLQENDYIIALKFRLRHVRNYLLHRKDPIANI*
Ga0137416_108169112	3300012927	Vadose Zone Soil	VGGDCVAEKVKKPRELATADLIQQYEGKLALLQTWESLRAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI*
Ga0137410_106141152	3300012944	Vadose Zone Soil	VAEKVKKPREVATADLIQQYEGKLALLKTWESLRAETQLQENDYIIALKSRLRHVRSYLLHRKDRIANI*
Ga0126369_115990501	3300012971	Tropical Forest Soil	MGGSMWVSSSEMGVGEKVKKPKEMATADRIQQYEGKLALLQTWESLPGETQLQEHDYIIALKSRLRQVRNYLLHRKDRIANI*
Ga0164305_108378651	3300012989	Soil	MAEKVKKPREVATADRIQQYEGKLALLQTWESLRAETQLQENDYIIALKSRLRHVRNYLLHRKDPSANI*
Ga0137418_100299522	3300015241	Vadose Zone Soil	VAEKVKKPREAATADLIQQYEGKLALLQTWQSLHAETQLRENDYIITLKSRLRHVRNYLLHRKDPIANI*
Ga0137412_103317611	3300015242	Vadose Zone Soil	VAEKVKKPREVATADLIQQYEGKRALLKTWESLPAETQLQENDYIITLKSRLRQVRSYLLHRKDRIANI*
Ga0137409_109063142	3300015245	Vadose Zone Soil	VAEKVKKPREVATADLIQQYEGKLALLKTWESLRAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI*
Ga0184605_103573052	3300018027	Groundwater Sediment	VAKEVKKPREVATTDRIHQYEGKLALLKTWESLPAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI
Ga0184619_102815351	3300018061	Groundwater Sediment	VEKEVKKPREVATADRIQQYEGKLALLKTWESLPAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI
Ga0184618_104481232	3300018071	Groundwater Sediment	VAEKVKKPREVATADLIQQYEGKLALLKTWESLPAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI
Ga0184635_100074036	3300018072	Groundwater Sediment	VEKEVKKPREVATADRIQQYEGKLALLKTWESLPAKTQLQENDYIIALKSRLRHVRNYLLHRKDPIANI
Ga0066667_101863933	3300018433	Grasslands Soil	VAKKVKKPREVATADRIQQYEGKLALLQTWESLPAVTQLQENDYIIALKSRLRQVRNYLLHRKDPIANI
Ga0066662_117425571	3300018468	Grasslands Soil	VAEKVKKPREVATADLIQQYEGKLALLKTWESLRAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI
Ga0193705_10894541	3300019869	Soil	VAKEVKKPRGAATADLIQQYEGKRALLKTWESLRAETQLQENDYIIALKSRLRQVRNNLLHRKDATANI
Ga0193715_10613271	3300019878	Soil	MAKKVKKPRELATADLIQQYEGKLALLQTWESLRAETRLQENDYIIALKSRLRHVRNYLLHRKDPIANI
Ga0193712_10108001	3300019880	Soil	VAQKVKKPREVATADLIQQYEGKRALLKTWESLPAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI
Ga0193707_10152851	3300019881	Soil	KKPRGAATADLIQQYEGKRALLKTWESLRAETQLQENDYIIALKSRLRQVRNNLLHRKDPIANI
Ga0193718_11242822	3300019999	Soil	VAKEVKKPRGAATDDLIQQYEGKRALLKTWESLRAETQLQENDYIIALKSRLRQVRNNLLHRKDPMANI
Ga0193731_10089593	3300020001	Soil	VAKEVKKQRGAATADLIQQYEGKRALLKTWESLAGETQLQENDYIIALKSRLRQVRNNLLHRKDPMANI
Ga0193730_11213412	3300020002	Soil	VGGDCVAKEVKKQRGAATADLIQQYEGKRALLKTWESLAGETQLQENDYIIALKSRLRQVRNNLLHRKDPMANI
Ga0193755_11586161	3300020004	Soil	VAEKVKKPREVATADLIQQYEGKLALLKTWESLRAETQLQENDYIIALKSRLRQVRNNLLHRKDPIANI
Ga0179592_100589303	3300020199	Vadose Zone Soil	VAEKVKKPREAATADLIQQYEGKLALLQTWQSLHAETQLRENDYIITLKSRLRHVRNYLLHRKDPIANI
Ga0210382_100258642	3300021080	Groundwater Sediment	VAKEVKKPREVATTDRIHQYEGKLALLKTWESLPTETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI
Ga0193709_10406261	3300021411	Soil	VAKEVKKPRGAATADLIQQYEGKRALLKTWESLAGETQLQENDYIIALKSRLRQVRNNLLHRKDPMANI
Ga0193750_10525262	3300021413	Soil	VKKPREVATADLIQQYEGKLALLQTWESLRAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI
Ga0179589_102510371	3300024288	Vadose Zone Soil	VAEKVKKPREVATADLIQQYEGKLALLKTWESLPAETQLQENDYIIALKSRLRQVRSYLLHRKDRIANI
Ga0179591_10512093	3300024347	Vadose Zone Soil	VAKEVKKPREVATADRIQQLRRQTSSAQNLGISPCRTQLQENDYIIALKSRLRHVRSYLLHRKDPIANI
Ga0207684_112216603	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VAEKLKKPRGVATADLIQQYEGKLALLKTWESLRAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI
Ga0257163_10232331	3300026359	Soil	VAEKVKKPREVATADRIQQYEGKLALLKTWESLPAEIQLQENDYIIALKSRLRQVRNYLLHRKDPIANI
Ga0257146_10533281	3300026374	Soil	VAEKVKKPREVATADRIQQYEGKLALLKTWESLPAETQLQENDYIIALKSRLRHVRSYLLHRKDRIANI
Ga0257171_10889172	3300026377	Soil	VAEKVKKPREVATADLIQQYEGKLALLKTWESLPAETQLQENDYIIALKSRLRHVRSYLLHRKDRIANI
Ga0257157_10764821	3300026496	Soil	VAQKVKKPREVATADLIQQYEGKLALLQTWQSLRAETQLRENDYIITLKSRLRNVRNYLLHRKDPIANI
Ga0257168_11023502	3300026514	Soil	VAEKVKKPREVATADLIQQYEGKLALLKTWQSLRAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI
Ga0209807_12449411	3300026530	Soil	LYRVGGDCVAEKVKKPREVATADLIQQYEGKLALLKTWESLRAETQLQENGYIIALKSRLRQVRNYLLHRKDPIANI
Ga0209161_100316033	3300026548	Soil	VAEKVKKPREVATADLIQQYEGKLALLKTWESLRAETQLQENDYIIALKSRLRQVRNYLLHRKDPIANI
Ga0209648_103014122	3300026551	Grasslands Soil	VAEKVKKPREVATADLIQQYEGKLALLQTWESLRAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI
Ga0179587_105014442	3300026557	Vadose Zone Soil	RVGGDCVAEKVKKPRELATADLIQQYEGKRALLKTWESLPAETQLQENDYIIALKSRLRQVRSYLLHRKDRIANI
Ga0208211_1010791	3300026734	Soil	VAEKVKKPRGVATADLIQQYEGKRALLKTWESLRAETQLQENDYIIALKSRLRNVRNYLLHRKDPIANI
Ga0208575_10097802	3300026920	Soil	VAEKVKKPRGVATADLIQQYEGKRALLKTWESLRAETQLQENDYIIALKSRLRQVRNNLLHRKDPIANI
Ga0209329_10587951	3300027605	Forest Soil	VAEKVKKPREVATADRIQQYEGKRALLKTWESLPAETQFQENDYIIALKSRLRHVRNYLLHRKDPIANI
Ga0209626_10277533	3300027684	Forest Soil	VAKEVKKPREVATADRIQQYEGKLALLKTWESLRAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI
Ga0137415_104294881	3300028536	Vadose Zone Soil	VAEKVKKPRELATADLIQQYEGKRALLKTWESLPAETQLQENDYIIALKSRLRQVRSYLLHRKDRIANI
Ga0307293_101972031	3300028711	Soil	VAKEVKKPREVATADRIQQYEGKLALLKTWESLPAKTQLQENDYIIALKSRLRHVRNYLLHRKD
Ga0307305_100906461	3300028807	Soil	MAKEVKKPREVATTDRIHQYEGKLALLKTWESLPAKTQLQENDYIIALKSRLRHVRNYLLHRKDPIANI
Ga0307308_101915802	3300028884	Soil	VAKEVKKPREVATADLIQQYEGKLALLKTWESLPAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI
Ga0308309_102100762	3300028906	Soil	VKEKVKKPREVATADRIQQYEGKLALLKTWESLPAETQLQENDYIIALKSRLRHVRSYLLHRKDPIANI
Ga0075377_116598721	3300030844	Soil	FRVGGDCVAEKVKKPREAATADLIQQYEGKLALLQTWESLRAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI
Ga0075374_113376581	3300030855	Soil	VTEKVKKAREVATAELIQQYEGKLALLKTWESLGAETQLQENDYIIALKSRLRHVRSYLLHRKDPIANI
Ga0075386_100089672	3300030916	Soil	VAEKVKKPREVATADRIQQYEGKLALLKTWESLPAETQLQENDYIIALKSRLRHVRSYLLHRKDPIANI
Ga0075373_115982832	3300030945	Soil	MAKKVKKPRELATADLIQQYEGKLALLQTWESLRAETRLQENDYIIALKSRLRHVRNYLLHRKDRIANI
Ga0075383_106197661	3300030966	Soil	MAKKVKKPRELATADLIQQYEGKLALLKTWESLPAETQLQENDYIIALKSRLRQVRNYLLHRKDRIANI
Ga0170834_1071970252	3300031057	Forest Soil	VAEKVKKPREVATADLIQQYEGKLALLKTWESLRAETQLQENDYIIALKSRLRHVR
Ga0170823_144862621	3300031128	Forest Soil	VTEKVKKAREVATAELIQQYEGKLALLQTWESLRAETQLQENDYIIALKSRLRHVRSYLLHRKDPIANI
Ga0170819_129963391	3300031469	Forest Soil	VAEKVKKPREVATADLIQEYEGKLALLQTWESLRAETQLQENDYIIALKSRLRQVRNYLLHRKDRIANI
Ga0307475_114453241	3300031754	Hardwood Forest Soil	VAKEVKKPRGVATADRIQQYEGKLALLKTWESLPAETQLQENDYIIALKSRLRHVRNYLLHRKDPIANI
Ga0310810_105318482	3300033412	Soil	VAEKVKKAREVATADLVQQYEGKLALLQTWESLRAETQLQENDYIIALKSRLQHVRNYLLHRKDPIANI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086097

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences