NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F086094

Metagenome / Metatranscriptome Family F086094

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F086094
Family Type Metagenome / Metatranscriptome
Number of Sequences 111
Average Sequence Length 42 residues
Representative Sequence PDEPNKPLAVFKIVGGCGALVLIGVWLYAAGKRRAARPA
Number of Associated Samples 100
Number of Associated Scaffolds 111

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 95.50 %
% of genes from short scaffolds (< 2000 bps) 87.39 %
Associated GOLD sequencing projects 94
AlphaFold2 3D model prediction Yes
3D model pTM-score0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (53.153 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(9.009 % of family members)
Environment Ontology (ENVO) Unclassified
(28.829 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(46.847 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.
1JGI1027J12803_1042303612
2JGI1027J12803_1086313012
3JGI12635J15846_106285571
4JGI12635J15846_106436801
5JGIcombinedJ26739_1007014092
6Ga0062385_105733971
7Ga0070709_114696232
8Ga0070733_106129171
9Ga0070764_102345691
10Ga0070764_108468052
11Ga0066903_1014562952
12Ga0080027_102064321
13Ga0075024_1006166271
14Ga0075028_1000124621
15Ga0075029_1001481454
16Ga0075017_1008408281
17Ga0075019_106506302
18Ga0075030_1012779412
19Ga0075030_1013246792
20Ga0070716_1004157962
21Ga0070765_1002626473
22Ga0116218_11169051
23Ga0116113_11660621
24Ga0116120_12163292
25Ga0116223_100515923
26Ga0126370_100782913
27Ga0126372_125375921
28Ga0137384_115094451
29Ga0157315_10623662
30Ga0137394_101555511
31Ga0137416_112468611
32Ga0137404_104392961
33Ga0137407_114671382
34Ga0164304_103806322
35Ga0181531_105604841
36Ga0181531_109648372
37Ga0182024_127008362
38Ga0181522_106448583
39Ga0182034_103488593
40Ga0181505_104121773
41Ga0187802_102006241
42Ga0187820_11216631
43Ga0187814_102727021
44Ga0187847_106957852
45Ga0187817_110232831
46Ga0187777_112709972
47Ga0187884_100503703
48Ga0187874_101284132
49Ga0187882_12029311
50Ga0187875_104186732
51Ga0187855_101939512
52Ga0187871_107927761
53Ga0187887_106038162
54Ga0187784_103174591
55Ga0193751_12726492
56Ga0193726_10145844
57Ga0210403_107188253
58Ga0210406_103600191
59Ga0210406_104274762
60Ga0210396_109795071
61Ga0210384_109315862
62Ga0210391_100354215
63Ga0210391_101197351
64Ga0210390_111416741
65Ga0210398_107736021
66Ga0224560_1013482
67Ga0208190_10968761
68Ga0208355_10182763
69Ga0207930_10605002
70Ga0207665_102618231
71Ga0207665_106823842
72Ga0179587_104799172
73Ga0208994_10180263
74Ga0209220_11580582
75Ga0208324_11219232
76Ga0208827_10438931
77Ga0209011_10286721
78Ga0209011_11562801
79Ga0209040_102232963
80Ga0209517_100284195
81Ga0209169_104649651
82Ga0209590_105668912
83Ga0209380_103783373
84Ga0209698_100291981
85Ga0302167_101264621
86Ga0265338_101750412
87Ga0265338_109378832
88Ga0302200_101651421
89Ga0222748_10720871
90Ga0247271_1083961
91Ga0311328_103967061
92Ga0311330_109116321
93Ga0302175_101575721
94Ga0316363_102010842
95Ga0310039_100585391
96Ga0302180_103897351
97Ga0302140_102185501
98Ga0302320_122558341
99Ga0310686_1069665921
100Ga0307474_110423262
101Ga0307477_100242124
102Ga0307473_105022672
103Ga0307478_102973681
104Ga0307471_1001911953
105Ga0307471_1043088332
106Ga0306920_1036518551
107Ga0335079_117881101
108Ga0335078_117405831
109Ga0326726_108550861
110Ga0370501_0038562_4_135
111Ga0370492_0325214_2_121
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 46.27%    β-sheet: 0.00%    Coil/Unstructured: 53.73%
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5101520253035PDEPNKPLAVFKIVGGCGALVLIGVWLYAAGKRRAARPAExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
53.2%46.8%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Peatland
Bog Forest Soil
Bog
Peatland
Freshwater Sediment
Watersheds
Soil
Soil
Vadose Zone Soil
Tropical Forest Soil
Surface Soil
Peatlands Soil
Arctic Peat Soil
Soil
Soil
Soil
Hardwood Forest Soil
Soil
Untreated Peat Soil
Tropical Peatland
Prmafrost Soil
Permafrost
Tropical Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Fen
Palsa
Bog
Peat Soil
Arabidopsis Rhizosphere
Rhizosphere
8.1%3.6%7.2%4.5%6.3%6.3%9.0%5.4%6.3%4.5%3.6%4.5%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI1027J12803_10423036123300000955SoilSLLPQPDEPNQALAVLKIIGLTGALLGIGVIIYAFGKRRARAT*
JGI1027J12803_10863130123300000955SoilDEPNKPLAVFKIVGGCGALLLVGVWIYVAGKRRAARNV*
JGI12635J15846_1062855713300001593Forest SoilPNKLLAVVKIVGGCGALVVIGVGLYWAGKRRARRTHVSR*
JGI12635J15846_1064368013300001593Forest SoilPLAVFKIVGGCGALVLIGVGLYWAGKRRAHQSHGLSH*
JGIcombinedJ26739_10070140923300002245Forest SoilANKPLAVFKIVGATGALVLVGVWIFLAGKRRAERPS*
Ga0062385_1057339713300004080Bog Forest SoilEPNKPLALLKIVGGTGALLLVGGWIYAAGKHRAARAVPGK*
Ga0070709_1146962323300005434Corn, Switchgrass And Miscanthus RhizospherePQPDEPNKLLAVIKVVGLSGLLVLIGTWIYWAGKKRALR*
Ga0070733_1061291713300005541Surface SoilPDEPNKPLALLKIVGGCGALLLIGVWIYAAGKRRAARMSLT*
Ga0070764_1023456913300005712SoilIPQPDEPNKPLALFKIVGGTGVLVLVGAWLYIAGKRRARAQSQPT*
Ga0070764_1084680523300005712SoilDEPNKPLALLKIVGGCGALVLIGVWLYVAGKRRAAQPNM*
Ga0066903_10145629523300005764Tropical Forest SoilPNKPLAVFKVVGGCGALLLIGVFLYLAGKRRAVLV*
Ga0080027_1020643213300005993Prmafrost SoilKPLALFKVVGGCGALVLIGAWLYVAGKRRARRQVS*
Ga0075024_10061662713300006047WatershedsPDEPNKLLAVIKIVGLSGLLVLIGAWIYWAVRRRARQGSTFL*
Ga0075028_10001246213300006050WatershedsPPPDEPNKPLAVFKIVGGCGALLVIGMWLYWAGKRRAAQTT*
Ga0075029_10014814543300006052WatershedsLSVLPPPDEPNKPLAVFKIVGGCGALLAIGMWLYWTGRRRANHQEA*
Ga0075017_10084082813300006059WatershedsPQPDEPNKPLALLKIVGGCGALLLIGAWIYVAGKRRARSSRQQGLT*
Ga0075019_1065063023300006086WatershedsILLSLIPQPDEPNKPLALLKIVGGCGALLLVGAWIYWSGKRRAWSGQ*
Ga0075030_10127794123300006162WatershedsEPNKPLALLKIVGGCGALLLIGAWIYVAGKRRARSSRQQGLT*
Ga0075030_10132467923300006162WatershedsDEPNKPLALLKIVGGCGALLLIGAGLYIAGKHRAARAEIA*
Ga0070716_10041579623300006173Corn, Switchgrass And Miscanthus RhizospherePQPDESNKALALLKILGGCGALLLVGVWLYVAGKSRAGRVPHQPKIV*
Ga0070765_10026264733300006176SoilPDEPNKPLALLKIVGGTGALLLIGAWMYWAGKRRTAQNAQWR*
Ga0116218_111690513300009522Peatlands SoilKPLALFKIVGGTGAIVLIGAWIYWAGKRRAARGTKTVT*
Ga0116113_116606213300009638PeatlandIALSVLPPPDEPNKPLAVFKIVGGCGGLVLIGAWLFWSGKRRAQRHPSQQA*
Ga0116120_121632923300009641PeatlandDEPNKPLALFKIVGGTAALLLLGIGIYVAGRQRGSENI*
Ga0116223_1005159233300009839Peatlands SoilLSVLPPPDEPNKPLAVFKIVGGCGALVLIGVGLHWVGKRRAGSIS*
Ga0126370_1007829133300010358Tropical Forest SoilLPPPDEPNKPLAVFKIVGGCGALLLIGMWIYWAGRRRAKRIEAHAGI*
Ga0126372_1253759213300010360Tropical Forest SoilDEPNKPLAVIKVVGLSGLMVLIGAWIYLAGKRKAQQD*
Ga0137384_1150944513300012357Vadose Zone SoilPLAMLKVIGGCGALVLVGAWIYWAGKRRATNAASRV*
Ga0157315_106236623300012508Arabidopsis RhizosphereDEPNKILAVVKIVGLSGILVGMGAWIYWSGKRRAARRRK*
Ga0137394_1015555113300012922Vadose Zone SoilLPPPDEPNKPLAVFKIVGGCGALVLIGMWLYWAGKRRALRDQQILSR*
Ga0137416_1124686113300012927Vadose Zone SoilPPDEPNKLLAVFKIVGGCGALVLIGVGLYWAGKRRARRSAEFSR*
Ga0137404_1043929613300012929Vadose Zone SoilPNKALAVFKIVGGCGALVLIGMWLYWSGKRRARRAA*
Ga0137407_1146713823300012930Vadose Zone SoilQPDEPNKPLALLKIVGGTAVMVLIGVCLYVAGKGRAQNSGLRT*
Ga0164304_1038063223300012986SoilEPNKLLAVIKIVGLSGLLVLIGAWIYWAGKRRAAREQSP*
Ga0181531_1056048413300014169BogPNKPLALFKVVGATMALVLLGVWIYATGKRRAASKAGAST*
Ga0181531_1096483723300014169BogVIPQPDEPNKPLAILKVVGGSIVLVLIGAWIYWAGKRRANLTRK*
Ga0182024_1270083623300014501PermafrostKALAVFKIVGGCGALVVIGVGLYWAGKRRAAWLL*
Ga0181522_1064485833300014657BogDEPNKPLAVFKIVGGCGALVLIGVGLYCLGKRRAQRNPSIWH*
Ga0182034_1034885933300016371SoilPQPDEPNKPLALFKVVGGCGALLLVGVWIYLAGKRRALRTDGPSR
Ga0181505_1041217733300016750PeatlandLIPQPDEPNKPLALLKIVGGTGALVLVGMWIYLAGKRRAAKSSMEK
Ga0187802_1020062413300017822Freshwater SedimentPQPDEPNKPLALFKVVGGCGALLLIGAWIYIAGKRRAARPA
Ga0187820_112166313300017924Freshwater SedimentPQPDEPNKLLALLKIVGGCGALLLIGVWIYRAGKRRAT
Ga0187814_1027270213300017932Freshwater SedimentLSLIPQPDEPNKPLALFKVVGGCGALVLIGAWIYIAGKRRAAREAAKET
Ga0187847_1069578523300017948PeatlandPDEPNKPLAVFKIVGGCGALLLIGAGLHWTGKRRAQRTADASR
Ga0187817_1102328313300017955Freshwater SedimentLSLIPPPDEPNKPLAVLKVVGGCGALLFIGAWIYVAGKHRAAQASARET
Ga0187777_1127099723300017974Tropical PeatlandDEPNKPLALFKIVGGTGALLLVGVWLYRAGKRRAIA
Ga0187884_1005037033300018009PeatlandLPPPDEPNKPLAVLKIVGGCGALLLIGVWLYWTGKRRAQRTM
Ga0187874_1012841323300018019PeatlandDEPNKPLALFKIIGGTGALVLIGAWIYWAGKRRAARVATRET
Ga0187882_120293113300018021PeatlandNKPLAVFKIVGGCGALLLIGVWLYWAGKRRAQRNPDVSR
Ga0187875_1041867323300018035PeatlandIPQPDEPNKPLALLKIVGGCAALVLIGVGIYVAGKHRAGPR
Ga0187855_1019395123300018038PeatlandPDEPNKPLAVFKIVGGCGALVLIGVWLYAAGKRRAARPA
Ga0187871_1079277613300018042PeatlandQPDEPNKLLALLKIVGGTGALVLIGAWIYVAGKHRAARAKLE
Ga0187887_1060381623300018043PeatlandIPQPDEPNKPLALFKIIGGTGALVLIGAWIYWAGKRRAARVATRET
Ga0187784_1031745913300018062Tropical PeatlandSVIPAPDEANKPLAVVKVVGGSIVLIAAGAGTYWFGKRQR
Ga0193751_127264923300019888SoilIPQPDEPNKLLAVIKIVGLSGLLVLIGAWIYWAGKRRALK
Ga0193726_101458443300020021SoilPQPDEPNKLLAVIKIVGLSGLMVLIGAWIYWAGKRRATRQRVLEP
Ga0210403_1071882533300020580SoilLIPQPDEPNKPLALFKIVGGTGALVLIGAWIYWAGKRRAHAGKKTQAALS
Ga0210406_1036001913300021168SoilNKALAVFKIVGGCGALVLIGVGLYWAGKRRAQKSPHFSR
Ga0210406_1042747623300021168SoilPNKTLAVFKIVGGCGALVLIGVGLYWAGKRRAQRSPGLFH
Ga0210396_1097950713300021180SoilQPDEPNKPLALLKIVGGTGALLLIGAWMYWAGKRRTAQNAQWR
Ga0210384_1093158623300021432SoilEPNKPLAVFKIVGGCGALVLIGVGLYWAGKRRAQKSPDFSR
Ga0210391_1003542153300021433SoilSLIPQPDEPNKPLALLKIVGGTGALLLIGAWMYWAGKRRTAQNAQWR
Ga0210391_1011973513300021433SoilSLIPQPDEPNKLLALLKIVGGTGVLVLVGIGIYAAGRRRAARA
Ga0210390_1114167413300021474SoilAVSVLPPPDEPNKPLAVFKIVGGCGALVLIGVGLYWTGKRRAAKAI
Ga0210398_1077360213300021477SoilLIPQPDEPNKLLALLKIVGGTGVLVLVGIGIYAAGRRRAARA
Ga0224560_10134823300023019SoilSLIPQPDEPNKPLALLKIVGGTGALVLMGAGIYIAGKRRAAKPVIET
Ga0208190_109687613300025473PeatlandIPQPDEPNKLLALSKIVGGTGALVVVGVWLYRAGKRRAADSVLTH
Ga0208355_101827633300025581Arctic Peat SoilPNKPLAALKIVGGCGALLLIGVGLYWAGKRRAQTGN
Ga0207930_106050023300025604Arctic Peat SoilNKPLAMLKVIGGCGALVLIGAWIYWAGKRRAARDASPA
Ga0207665_1026182313300025939Corn, Switchgrass And Miscanthus RhizosphereLIPQPDESNKALALLKILGGCGALLLVGVWLYVAGKSRAGRVPHQPKIV
Ga0207665_1068238423300025939Corn, Switchgrass And Miscanthus RhizosphereLIPQPDEPNKPLALFKVVGGCGALVLIGAWLYMAGKRRAAEG
Ga0179587_1047991723300026557Vadose Zone SoilQAEELNKPLALLKVVGGTAVLVSLGVWIYIAGKRRAARAPQSEM
Ga0208994_101802633300027164Forest SoilPAPDEPNKPLAVFKIVGGTGALLVFGAWLYLRGKRRARII
Ga0209220_115805823300027587Forest SoilDEPNKLLAVFKIVGGCGALVLIGIGLYWAGKRRARRSPDFSR
Ga0208324_112192323300027604Peatlands SoilLALFKIVGGTGAIVLIGAWIYWAGKRRAARGTKTVT
Ga0208827_104389313300027641Peatlands SoilPNKPLALFKVVGGCGALVLIGVWIYRAGRKRAIAT
Ga0209011_102867213300027678Forest SoilALSVLPPPDEPNKLLAVFKIVGGCGALVLIGIGLYWAGKRRARRSPDFSR
Ga0209011_115628013300027678Forest SoilEPNKPLALLKIVGGTGALMVVGGLIYVAGKRRAARLHEET
Ga0209040_1022329633300027824Bog Forest SoilQPDEPNKPLALLKIVGGTAVLVLVGIGIYVAGKRRAAQNKIA
Ga0209517_1002841953300027854Peatlands SoilPPPDEPNKPLAVFKIVGGCGALVLIGVGLHWVGKRRAGSIS
Ga0209169_1046496513300027879SoilKPLALFKIVGGTGVLVLVGAWLYIAGKRRARAQSQPT
Ga0209590_1056689123300027882Vadose Zone SoilEPNKPLALFKVVGGCGALVAIGAGIYVAGKRRAKLG
Ga0209380_1037833733300027889SoilQPDEANKPLALFKIVGGTGLLVLVGVWIYAAGKRRASR
Ga0209698_1002919813300027911WatershedsLFTIALSVLPPPDEPNKTLAVFKIVGGCGALVLIGAGLYWAGKRRAARMT
Ga0302167_1012646213300028676FenDEPNKPLAVFKIVGGCGALVLIGMWLYWSGKRRAARTT
Ga0265338_1017504123300028800RhizospherePDEPNKALALFKVVGGTGALVVIGAWIYWAGKRRAAREHQLT
Ga0265338_1093788323300028800RhizosphereNKPLAMFKVIGGCGALVLIGAWIYWAGKRRSATDASAA
Ga0302200_1016514213300028909BogVLPPPDEPNKPLAVFKIVGGCGGLVLIGAWLFWSGKRRAQRHPSQQA
Ga0222748_107208713300029701SoilLALFKIVGGTGALVLIGAWIYWAGKRRAHTGKKTQAALS
Ga0247271_10839613300029903SoilSMLPPPDEPNKPLAVFKIVGGCGALVLMGVGLYWAGKRRQL
Ga0311328_1039670613300029939BogPLALLKIVGGTGVLVLVGVAIYFAGKRRAAQSVLTN
Ga0311330_1091163213300029945BogPDEPNKPLALLKIVGGTGVLVLVGAGIYNTGKRRGARSIA
Ga0302175_1015757213300030014FenPDEPNKPLAVFKIVGGCGALLLIGVWLYWAGKKRAMAK
Ga0316363_1020108423300030659Peatlands SoilLSVLPPPDEPNKPLAVFKIVGGCGALVLIGVGLHWVGKRRAGSIS
Ga0310039_1005853913300030706Peatlands SoilDEPNKPLALFKIVGGTGAIVLIGAWIYWAGKRRAARGTKTVT
Ga0302180_1038973513300031028PalsaQADEPNKTLALFKILGATTALVLIGVWIYAAGKRRAAKEVGAL
Ga0302140_1021855013300031261BogQPDEPNKPLALLKIVGGTGVLVLVGAGIYNTGKRRGARSIA
Ga0302320_1225583413300031524BogSVLPPPDEPNKALAVLKIVGGCGALVLLGVGLYWSGKRRAQRGVGLSTDAASTGPR
Ga0310686_10696659213300031708SoilNKLLALLKIVGGTTALVLIGLGIYVAAKRKAAAIG
Ga0307474_1104232623300031718Hardwood Forest SoilLIPQPDEPNKPLALFKIVGGTGALVLIGAWIYAAGKHRAASPMQNKLS
Ga0307477_1002421243300031753Hardwood Forest SoilKALALLKILGGCGALLLVGVWLYVAGKRRAARVAHQPKIV
Ga0307473_1050226723300031820Hardwood Forest SoilVLPQPDEPNKSLAVVKIVGGCGVLVLIGVGLYWTGKRRAMRSHGLSH
Ga0307478_1029736813300031823Hardwood Forest SoilSLIPQPDEPNKALALLKILGGCGALLLVGVWLYVAGKRRAARGAHQPKIV
Ga0307471_10019119533300032180Hardwood Forest SoilLPPPDEPNKLLAVFKIVGGCGALVLIGVGLYWAGKRRAVTR
Ga0307471_10430883323300032180Hardwood Forest SoilPQPDEPNKLLAVIKIVGLSGLLVLIGAWIYWAGKRRAQSS
Ga0306920_10365185513300032261SoilISVIPQHDEPNKLLAVIKVVGGSAVLLAVGAWLYWAGKQRASI
Ga0335079_1178811013300032783SoilTSLTILLSLLPQPDEPNKLLAVVKIVGSTGAILAVGAWIYWTGKRRTT
Ga0335078_1174058313300032805SoilDEPNKPLAVLKIVGGCAALILVGVWIYVAGKRRAARALIKSDTPR
Ga0326726_1085508613300033433Peat SoilDEPNKLLAVIKIVGLSGLLVLIGAWIYWAGKKRALSKTT
Ga0370501_0038562_4_1353300034195Untreated Peat SoilLSLIPQPDEPNKLLAVIKIVGLSGLLVLIGAWIYWAGKKRALR
Ga0370492_0325214_2_1213300034282Untreated Peat SoilPNKPLALFKIVGGTGVLVLVGVGIYVVGKHRAAASIQNT


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