Metagenome / Metatranscriptome Family F086092

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F086092
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	42 residues
Representative Sequence	MRVLILSHRDVVAALPPQACAESMAAVLAARARGETYMPLR
Number of Associated Samples	100
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	91.43 %
% of genes near scaffold ends (potentially truncated)	94.59 %
% of genes from short scaffolds (< 2000 bps)	86.49 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (94.595 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (34.234 % of family members)
Environment Ontology (ENVO)	Unclassified (36.937 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.550 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.33% β-sheet: 0.00% Coil/Unstructured: 66.67%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF00248	Aldo_ket_red	85.59
PF12902	Ferritin-like	3.60
PF01522	Polysacc_deac_1	0.90
PF07883	Cupin_2	0.90
PF04525	LOR	0.90
PF00081	Sod_Fe_N	0.90
PF07690	MFS_1	0.90
PF00296	Bac_luciferase	0.90
PF10901	DUF2690	0.90
PF03807	F420_oxidored	0.90
PF00440	TetR_N	0.90
PF01546	Peptidase_M20	0.90
PF00300	His_Phos_1	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0605	Superoxide dismutase	Inorganic ion transport and metabolism [P]	0.90
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.90
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.90
COG4894	Putative phospholipid scramblase YxjI, Tubby2 superfamily	Lipid transport and metabolism [I]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.59 %
Unclassified	root	N/A	5.41 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.59 %
Unclassified	root	N/A	5.41 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.59 %
Unclassified	root	N/A	5.41 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	76.58 %
Unclassified	root	N/A	5.41 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	76.58 %
Unclassified	root	N/A	5.41 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	31.53 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	6.31 %
Unclassified	root	N/A	5.41 %

Name	Rank	Taxonomy	Distribution
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	11.71 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	6.31 %
Unclassified	root	N/A	5.41 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.80 %

Name	Rank	Taxonomy	Distribution
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	11.71 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	6.31 %
Unclassified	root	N/A	5.41 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.80 %

Name	Rank	Taxonomy	Distribution
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	11.71 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	6.31 %
Unclassified	root	N/A	5.41 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.80 %

Name	Rank	Taxonomy	Distribution
unclassified Arthrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter	11.71 %
unclassified Solirubrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter	6.31 %
Unclassified	root	N/A	5.41 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.80 %

Name	Rank	Taxonomy	Distribution
Arthrobacter sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp.	11.71 %
Solirubrobacter sp. URHD0082	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	6.31 %
Unclassified	root	N/A	5.41 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.80 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005467\|Ga0070706_100392119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	1292	Open in IMG/M
3300005617\|Ga0068859_101528866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	737	Open in IMG/M
3300005713\|Ga0066905_100175732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1574	Open in IMG/M
3300005764\|Ga0066903_104548794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	739	Open in IMG/M
3300006102\|Ga0075015_100914430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	533	Open in IMG/M
3300006173\|Ga0070716_100484939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	909	Open in IMG/M
3300006173\|Ga0070716_100514510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	886	Open in IMG/M
3300006755\|Ga0079222_10127260	All Organisms → cellular organisms → Bacteria	1400	Open in IMG/M
3300006804\|Ga0079221_10758726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	687	Open in IMG/M
3300006804\|Ga0079221_11594753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	528	Open in IMG/M
3300006893\|Ga0073928_11209409	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300009038\|Ga0099829_10671302	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300009088\|Ga0099830_11479019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	565	Open in IMG/M
3300009523\|Ga0116221_1028657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2790	Open in IMG/M
3300010046\|Ga0126384_10199148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1584	Open in IMG/M
3300010046\|Ga0126384_10519787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1029	Open in IMG/M
3300010322\|Ga0134084_10391165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	540	Open in IMG/M
3300010398\|Ga0126383_10141899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2226	Open in IMG/M
3300012924\|Ga0137413_10899928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	687	Open in IMG/M
3300013308\|Ga0157375_10473711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1417	Open in IMG/M
3300014150\|Ga0134081_10371391	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300016294\|Ga0182041_10620817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	951	Open in IMG/M
3300016319\|Ga0182033_11927297	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300016341\|Ga0182035_11337759	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300016404\|Ga0182037_10985966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	734	Open in IMG/M
3300017937\|Ga0187809_10030997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1709	Open in IMG/M
3300017939\|Ga0187775_10420890	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300017973\|Ga0187780_11372209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	521	Open in IMG/M
3300017974\|Ga0187777_10671582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp.	734	Open in IMG/M
3300020581\|Ga0210399_10122133	All Organisms → cellular organisms → Bacteria	2141	Open in IMG/M
3300021377\|Ga0213874_10273512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp.	629	Open in IMG/M
3300021402\|Ga0210385_10207088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1428	Open in IMG/M
3300021404\|Ga0210389_10717101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	783	Open in IMG/M
3300021433\|Ga0210391_10892607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	694	Open in IMG/M
3300021477\|Ga0210398_10119665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2140	Open in IMG/M
3300021560\|Ga0126371_10986455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	984	Open in IMG/M
3300021560\|Ga0126371_13011814	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300021861\|Ga0213853_10336939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	738	Open in IMG/M
3300024323\|Ga0247666_1107244	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300025574\|Ga0208717_1080131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	737	Open in IMG/M
3300025903\|Ga0207680_11107183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	566	Open in IMG/M
3300025929\|Ga0207664_10906941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	791	Open in IMG/M
3300026095\|Ga0207676_10151630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1997	Open in IMG/M
3300026306\|Ga0209468_1195316	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300026340\|Ga0257162_1050073	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300027497\|Ga0208199_1008262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2499	Open in IMG/M
3300027604\|Ga0208324_1011097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2919	Open in IMG/M
3300027765\|Ga0209073_10054259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1323	Open in IMG/M
3300027869\|Ga0209579_10063022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1964	Open in IMG/M
3300028072\|Ga0247675_1043850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	661	Open in IMG/M
3300028138\|Ga0247684_1079747	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300028379\|Ga0268266_10914398	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300028747\|Ga0302219_10277413	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300028787\|Ga0307323_10215318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	693	Open in IMG/M
3300028819\|Ga0307296_10124633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1386	Open in IMG/M
3300028828\|Ga0307312_10528902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	779	Open in IMG/M
3300029910\|Ga0311369_11420533	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300030503\|Ga0311370_10491559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	1507	Open in IMG/M
3300030520\|Ga0311372_10249307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2879	Open in IMG/M
3300030580\|Ga0311355_10141465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2602	Open in IMG/M
3300030617\|Ga0311356_10355312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1456	Open in IMG/M
3300030618\|Ga0311354_10433569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1317	Open in IMG/M
3300031525\|Ga0302326_13725056	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300031564\|Ga0318573_10197517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1066	Open in IMG/M
3300031572\|Ga0318515_10448921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp.	689	Open in IMG/M
3300031572\|Ga0318515_10474473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp.	668	Open in IMG/M
3300031572\|Ga0318515_10562207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp.	607	Open in IMG/M
3300031668\|Ga0318542_10451864	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	666	Open in IMG/M
3300031713\|Ga0318496_10184331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1145	Open in IMG/M
3300031747\|Ga0318502_10170415	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1249	Open in IMG/M
3300031764\|Ga0318535_10348301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	662	Open in IMG/M
3300031779\|Ga0318566_10064819	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1757	Open in IMG/M
3300031780\|Ga0318508_1206078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp.	563	Open in IMG/M
3300031798\|Ga0318523_10003038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5946	Open in IMG/M
3300031799\|Ga0318565_10582447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp.	538	Open in IMG/M
3300031821\|Ga0318567_10242618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1011	Open in IMG/M
3300031832\|Ga0318499_10248036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	691	Open in IMG/M
3300031846\|Ga0318512_10272492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	838	Open in IMG/M
3300031859\|Ga0318527_10210544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	824	Open in IMG/M
3300031880\|Ga0318544_10118987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1003	Open in IMG/M
3300031910\|Ga0306923_10862863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	994	Open in IMG/M
3300031910\|Ga0306923_11945542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp.	599	Open in IMG/M
3300031912\|Ga0306921_10774821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1097	Open in IMG/M
3300031912\|Ga0306921_11251186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	824	Open in IMG/M
3300031945\|Ga0310913_11061884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	566	Open in IMG/M
3300031954\|Ga0306926_11612116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	744	Open in IMG/M
3300031959\|Ga0318530_10243935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	740	Open in IMG/M
3300031996\|Ga0308176_10211804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1831	Open in IMG/M
3300032001\|Ga0306922_11122558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	804	Open in IMG/M
3300032001\|Ga0306922_12010532	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300032025\|Ga0318507_10434563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp.	571	Open in IMG/M
3300032041\|Ga0318549_10482616	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300032043\|Ga0318556_10064237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1803	Open in IMG/M
3300032044\|Ga0318558_10460036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp.	634	Open in IMG/M
3300032044\|Ga0318558_10642715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp.	530	Open in IMG/M
3300032060\|Ga0318505_10595391	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp.	520	Open in IMG/M
3300032065\|Ga0318513_10376314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp.	692	Open in IMG/M
3300032068\|Ga0318553_10305481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	832	Open in IMG/M
3300032076\|Ga0306924_10474674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1427	Open in IMG/M
3300032089\|Ga0318525_10102454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1459	Open in IMG/M
3300032089\|Ga0318525_10508208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	617	Open in IMG/M
3300032783\|Ga0335079_12203610	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300033158\|Ga0335077_10322725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1682	Open in IMG/M
3300033433\|Ga0326726_12508296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	500	Open in IMG/M
3300033544\|Ga0316215_1016342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	747	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.69%
Host-Associated	Host-Associated	6.31%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.19%
Plants	Host-Associated → Plants	6.31%
Aquatic	Environmental → Aquatic	4.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.08%
Peat	Environmental → Terrestrial → Peat	8.11%
Freshwater	Environmental → Aquatic → Freshwater	2.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.70%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.80%
Roots	Host-Associated → Plants → Roots	1.80%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.90%
Sediment	Environmental → Aquatic → Sediment	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.37%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	8.11%
Loam	Environmental → Terrestrial → Soil → Loam	6.31%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.41%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.80%
Unclassified	Host-Associated → Plants → Roots → Unclassified	1.80%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.80%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.90%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	45.05%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.02%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	8.11%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.50%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.60%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.90%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.90%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.90%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	34.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.81%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	7.21%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.60%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.60%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.70%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.70%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.70%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.80%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.80%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.80%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.90%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.90%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.90%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.90%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.90%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	0.90%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024323	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07	Environmental	Open in IMG/M
3300025574	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 shallow (SPAdes)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028072	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK16	Environmental	Open in IMG/M
3300028138	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK25	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033544	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE5	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070706_1003921192	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MRVLVLSHRAVLAALSAGECAEAMAAVLAEHARGETYMPLRSVMMP
Ga0070734_103447091	3300005533	Surface Soil	VLVLSHDDVLAALPPEECAQAMADVLAAHARSEAQMPLRTVWAPPDAAGLVG
Ga0068859_1015288661	3300005617	Switchgrass Rhizosphere	MRVLVLSHRDVLAALQPDACAAAMAAALAGHVRGESYMPLRSVMMPPDAPGFM
Ga0066905_1001757321	3300005713	Tropical Forest Soil	MRVLVLSHRDVVAALPPRACAESMAAVLAARARGE
Ga0066903_1045487942	3300005764	Tropical Forest Soil	MRVLTLSHRDVLAALQPEECAAAMATVLAEHARGGTYLPLRSVMAPPGAA
Ga0075015_1009144302	3300006102	Watersheds	MRVLVLSHRDVVAALPPRACAEAMAAVLTARARGETYHPL
Ga0070716_1004849391	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MRVLVLSHRDVLAALPPQACAAAMAAALAGHARGESYMPLRSVMMPP
Ga0070716_1005145101	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MRVLVLSHRDVLAALQPDACAAAMAAALAGHARGESYMPLRSVMM
Ga0079222_101272603	3300006755	Agricultural Soil	MRVLVLSHRDVVTALPPQACAESMAAVLAARARGETHMPLRSI
Ga0079221_107587262	3300006804	Agricultural Soil	MRVLILSHRDVLDALQPGPCADAMAAVLAGHARGETF
Ga0079221_115947531	3300006804	Agricultural Soil	MRVLILSHHDVVAALPPRACAEAMAAVLAARARGET
Ga0073928_112094091	3300006893	Iron-Sulfur Acid Spring	MRVLILSHRDVVAALAPRACAESMAAVLAARARGETHMPLR
Ga0099829_106713023	3300009038	Vadose Zone Soil	MRVLVLSHRDVVAALLPKACAESMAAVLAARALRP
Ga0099830_114790191	3300009088	Vadose Zone Soil	MRVLVLSHRDVVAALLPKACAESMAAVLAARARGETHMPLRS
Ga0116221_10286571	3300009523	Peatlands Soil	MRALVLSHREVLAALPVEACAHAMGAVLTEHARGGTYMPLRSVM
Ga0126384_101991481	3300010046	Tropical Forest Soil	MPVLILSHDDVHAALPPDACAEAMAAVLAEHARGATYLPLRSV
Ga0126384_105197872	3300010046	Tropical Forest Soil	MRVLILSHSDVEAALPPEACAEAMAAVLAEHARGATYLP
Ga0134084_103911651	3300010322	Grasslands Soil	MRVLVLGHRDVLDALSPQACADAMAAVLAGHARGESFLPLRSVMAPPGAAG
Ga0134128_123244601	3300010373	Terrestrial Soil	MRVLILSHDDVHKALTPEECADAMAAVLAGLARGEAFMPLHS
Ga0134126_115181551	3300010396	Terrestrial Soil	MRVLTLSNADIHAALPPAECELAMAAVLAARARGDAFNPLRTVTVPP
Ga0126383_101418993	3300010398	Tropical Forest Soil	MPVLILSHRDVLAALPPQACAEAMAAVLAAHARGET
Ga0137413_108999282	3300012924	Vadose Zone Soil	MKVLVLSHRDVLAALQPDACAAAMAAVLAGHARGETFMPLRSVMMP
Ga0157375_104737111	3300013308	Miscanthus Rhizosphere	MRVLVLSHRDVLAALQPEACVAAMAAVLARHARGETFMPLRSV
Ga0134081_103713911	3300014150	Grasslands Soil	MRVLVLSHRDVVAALSPRACAEAMAAVLAARARDETYHPLRTVMRP
Ga0182041_106208172	3300016294	Soil	MRVLILSHRDVLAALPPQACAESMAAVLAARARGETHMPLRSIMA
Ga0182033_119272972	3300016319	Soil	MRVLILSHRDVAAALPPQACAEAMAAVLTARARGETYH
Ga0182035_113377592	3300016341	Soil	MPVLILSHRDVLAALPPGKCAAAMTAVLAAHGRGETY
Ga0182037_109859661	3300016404	Soil	MRVLILSHRDVLAALTPQRCAEAMAEVLAAQARGETYLPLRSLMVPPG
Ga0187809_100309971	3300017937	Freshwater Sediment	MRALVLGHREVLAALPLEACAQAMTKVLTEQARGGTYMPLRSVMMAPGAAGFL
Ga0187775_104208902	3300017939	Tropical Peatland	MRVLILSHSDVEAALPPGACAEAMAAVLAEHARGATYLPLRSVIKP
Ga0187776_111694682	3300017966	Tropical Peatland	VRVLILSHADVHAALTPEECADAMASVLAAHARGE
Ga0187780_113722092	3300017973	Tropical Peatland	MLILTHGDVLAALPPSDCAAAMAEVLEARARGETYMPLR
Ga0187777_106715821	3300017974	Tropical Peatland	MLILTHDDVLTVLPPSDCAAAMAEVLEARARGETYMPLRTV
Ga0187822_103300321	3300017994	Freshwater Sediment	VRVLTLSNADIHAALTPADCERAMAGVLAARARGDAYNPLRTVTFPPGAAG
Ga0210399_101221333	3300020581	Soil	MRLLVLSHRDVLAALSPQACAEAMAAVLAGHARGETFMP
Ga0213874_102735122	3300021377	Plant Roots	MLVLSHDDVVAALPPEDCAEAMAEVLAARARGETYMP
Ga0210385_102070881	3300021402	Soil	MRVLLLSHRDVLAALPPEACAEAMAAVLAAHARGETYM
Ga0210389_107171012	3300021404	Soil	MRVLVLSHRDTLAALPAAACAEAMAEVLVARARGEAYLPLRSVM
Ga0210391_108926072	3300021433	Soil	MSVLILNHDDVHAALEPEECERAMAAVLTAHGRGEAYFPLR
Ga0210398_101196651	3300021477	Soil	MRVLVLSHQDVAAALPPRACAEAMAAVLTAQARGE
Ga0126371_109864551	3300021560	Tropical Forest Soil	MRVLILSHRDVVAALPPHACAEGMAAVLAARARGETYHPLRTVMR
Ga0126371_130118142	3300021560	Tropical Forest Soil	MRVLVLSHRDVLAALPPSACAEAMAAALAAHARGGSFMPLRSVMAPPG
Ga0213853_103369391	3300021861	Watersheds	MRVLILSHSDVLAALTPVACAEAMAAVLAGHASGETFMPLRSV
Ga0247666_11072442	3300024323	Soil	MRVLVLSHRDVLAALQPDACAAAMAAALAGHARGESYMPLRSVMMPPDAPGFMGL
Ga0208717_10801311	3300025574	Arctic Peat Soil	MGVLILSYADVAAALATDECERAMASVLAARARGGAFNPLRSVTAP
Ga0207680_111071832	3300025903	Switchgrass Rhizosphere	MGVLILGHDDVYAALPPEVCAEAMAAVLAEHARGGTYL
Ga0207700_107929771	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MRVLTLSNADIHAALPPAECEQAMAAVLAARARGDAFN
Ga0207664_109069411	3300025929	Agricultural Soil	MRVLVLSHRDILAALRPQACAEAMAAVLAGHARGETFMPLRS
Ga0207676_101516303	3300026095	Switchgrass Rhizosphere	MRVLVLSHRDILAALRPQACAEAMAAVLAGHARGETFMP
Ga0209468_11953162	3300026306	Soil	MRVLVLSHRDVVAALSPRACAEAMAAVLAARARDE
Ga0257162_10500732	3300026340	Soil	MRVLILSHRDVEAALPPEACAEAMAAVLAEHARGGTYLPLRT
Ga0208199_10082621	3300027497	Peatlands Soil	MRVLVLSHRDVLAALTPQACADAMAAVLAEHASGG
Ga0208324_10110971	3300027604	Peatlands Soil	MRVLVLSHRDVLAALTPQACADAMAAVLAEHASGGTYLPLR
Ga0209073_100542593	3300027765	Agricultural Soil	MQVLVLSHRDILAALRPQACAEAMAAVLAGHARGETFMP
Ga0209579_100630221	3300027869	Surface Soil	MRALVLGHREVLAALPLEACAHAMGAVLTEHARGGTYMP
Ga0247675_10438502	3300028072	Soil	MRVLVLSHRDVLAALQPDACAAAMAAALAGHARGESYMPLRSVMMPPDAPG
Ga0247684_10797472	3300028138	Soil	MGVLILSHDDVYAALPPEACAEAMAAVLAEHAQGATYLPLRS
Ga0268266_109143983	3300028379	Switchgrass Rhizosphere	MRVLVLSHRDVLAALQPDACASAMAAALAGHARGESYMPL
Ga0302219_102774132	3300028747	Palsa	MGVLVLSHDDVRAALTPAACIEAMAEVLAAHARGDAYMPLRSVMR
Ga0307323_102153181	3300028787	Soil	MRVLTLSHRDVLAALSPEDCAEAMAAVLAEHARGGT
Ga0307296_101246331	3300028819	Soil	MRVLTLSHRDVLAALSPEDCAEAMAAVLAEHARGG
Ga0307312_105289022	3300028828	Soil	MRVLILSHRDVLAALSPEACAGAMTAVLAERARGE
Ga0311369_114205331	3300029910	Palsa	MRVLVLSHDDVLAALPPADCAAAMAEVLGAHARGEAF
Ga0311370_104915591	3300030503	Palsa	MRVLVLSHDDVLAALPPAECAAAMAEVLAAHARDEAFMPLRSVMMPP
Ga0311372_102493071	3300030520	Palsa	MRVLVLSHDDVLAALPPAECAAAMAEVLAAHARDEAFMPLR
Ga0311355_101414651	3300030580	Palsa	MRVLVLSHEDVRETLTPAACLEAMAEVLAALARGEAYMPLRS
Ga0311356_103553123	3300030617	Palsa	MRVLVLSHADVHAALAPPDCELAMAEVLAARARGEAYMPLRSVMMPPGAS
Ga0311354_104335693	3300030618	Palsa	MRVLVLSHEDVRETLTPAACLEAMAEVLAALARGEAY
Ga0302326_137250562	3300031525	Palsa	MRVLMLSHADVHAALAPAECESAMAAVLAARARGEAYMPLRSVMMPPGAAGFM
Ga0318573_101975171	3300031564	Soil	MRVLILSHRDVLAALPPQACAESMAAVLAARARGETHM
Ga0318515_104489211	3300031572	Soil	MRVLVLSHRDVLAALPPQACAESMAAVLAARARGETHMPLRSIMAAPGAAGF
Ga0318515_104744732	3300031572	Soil	MRVLILSHRDVLAALPPQACAESMAAVLAARARGETHMPLRSIMAAPGAAGF
Ga0318515_105622072	3300031572	Soil	MRVLVLSHRDVVAALPPKTCAESMAAVLAARARGETHM
Ga0318542_104518642	3300031668	Soil	MRVLVLSHRDVLAALLPEACAEAMAAVLAGHARGE
Ga0318496_101843312	3300031713	Soil	MRVLVLSHRDVLAALTPDACAEAMAAVLAGHARGETFM
Ga0318502_101704152	3300031747	Soil	MRVLVLSHRDVVAALPPAACAESMAAVLAARARGETHMPLRSIMAPSG
Ga0318535_103483012	3300031764	Soil	MPVLILSHRDVLAALPPDKCAAAMAAILAAHGRGETYQ
Ga0318566_100648191	3300031779	Soil	MRVLILSHRDVVAALPPRACAESMAAVLAARARGETYMPLRSI
Ga0318508_12060781	3300031780	Soil	MRVLILSHRDVLAALPPQACAESMAAVLAARARGETHMPLRSIMAAPGAAGV
Ga0318523_100030381	3300031798	Soil	MRVLVLSHRDVLAALLPEACAEAMAAVLAGHARGETFMPLRSVM
Ga0318565_105824472	3300031799	Soil	MRVLVLSHRDVVAALPPRACAESMAAVLAARARGETH
Ga0318567_102426181	3300031821	Soil	MRVLVLSHRDVLAALSPEACAEAMAAVLAGHARGETF
Ga0318499_102480361	3300031832	Soil	MRVLILSHRDVLAALPPQACAESMAAVLAARARGETHMPPRVPP
Ga0318512_102724922	3300031846	Soil	MRVLILSHRDVVAALPPQACAESMAAVLAARARGETYMPLR
Ga0318527_102105442	3300031859	Soil	MRVLVLSHGDVVAALPPRACAESMAAVLAARARGETYMPLRSIMAAPG
Ga0318544_101189871	3300031880	Soil	MRVLVLSHRDVLAALPPQACAESMAAVLAARARGETHMPLRSIMAA
Ga0306923_108628631	3300031910	Soil	MRVLILSHRDVLAALPPQACAESMAAVLAARARGETHMPLRSIMAAPGA
Ga0306923_119455421	3300031910	Soil	MRVLVLSHGDVVAALPPRACAESMAAVLAARARGETYMPL
Ga0306921_107748211	3300031912	Soil	MRVLILSHNDVEAALPPGACAEAMAAVLAEHARGATYLPLR
Ga0306921_112511862	3300031912	Soil	MRVLILSHRDVLAALTPHGCAEAMAEVLAAQARGEAYLPLRSLMVPPGVAG
Ga0310913_110618842	3300031945	Soil	MRVLILSHRDVVAALPPRACAESMAAVLAARARGETYM
Ga0306926_116121162	3300031954	Soil	MRVLILSHRDVVAALPPRACAEAMAAVLAARARGET
Ga0318530_102439352	3300031959	Soil	MRVLVLSHRDVVAALPPAACAESMAAVLAARARGETHMPL
Ga0308176_102118041	3300031996	Soil	MRVLVLSHRDVLAALRPRPCAEAMAAVLAGHARGETH
Ga0306922_111225582	3300032001	Soil	MRVLILSHRDVLAALPPQACAESMAAVLAARARGE
Ga0306922_120105322	3300032001	Soil	MRVLILSHRDVLAALTPHGCAEAMAEVLAAQARGEAYLPLRSLMV
Ga0318507_104345631	3300032025	Soil	MRVLILSHRDVLAALPPQACAESMAAVLAARARGETHMPLRSIM
Ga0318549_104826162	3300032041	Soil	MRVLILSHRDVLAALTPHGCAEAMAEVLAAQARGEAYLPLRSLMVPPG
Ga0318556_100642371	3300032043	Soil	MRVLVLSHRDVLAALPPQACAESMAAVLAARARGETHMPL
Ga0318558_104600362	3300032044	Soil	MRVLILSHRDVLAALPPQACAESMAAVLAARARGETHMPLRSLMAAP
Ga0318558_106427151	3300032044	Soil	MRVLILSHRDVVAALPPQACAESMAAVLAARARGETYMPLRSI
Ga0318505_105953912	3300032060	Soil	MRVLVLSHGDVVAALPPRACAESMAAVLAARARGETYMPLRSI
Ga0318513_103763141	3300032065	Soil	MRVLILSHRDVLAALPPQACAESMAAVLAARARGETHMPLRSIMAAPGAAG
Ga0318553_103054811	3300032068	Soil	MRVLVLSHRDVVAALPPQACAESMAAVLAARARGETHMPLCEFQLA
Ga0306924_104746741	3300032076	Soil	MRVLVLSHRDVVAALPPKTCAESMAAVLAARARGETH
Ga0318525_101024543	3300032089	Soil	MRVLILSHRDVVAALPPRACAESMAAVLAARARGETYMPLR
Ga0318525_105082082	3300032089	Soil	MGVLILSHSDVEAALPPGACAEAMAAVLAEHARGA
Ga0335079_122036101	3300032783	Soil	MHVLILSHRDVHAALPPEACAEAMAAVLAEHARGAT
Ga0335077_103227253	3300033158	Soil	MHVLILSHRDVHAALPPEACAEAMAAVLAEHARGATYLPLRSV
Ga0326726_125082961	3300033433	Peat Soil	MRVLVLSHGDVVTALPPGECAAAMAAVLTAHGRGETYM
Ga0316215_10163422	3300033544	Roots	MRVLVLSHSDVLAALPAAACAEAMAEVLAARARGEAYGPLRSVMI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086092

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences