Metagenome / Metatranscriptome Family F086087

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086087
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	72 residues
Representative Sequence	MDLSRTTIKKAYPYHGICEFCGRVHVLSYYDLVLECAVCEECAEDLASGENELIAAGIASPEPENFDGLGS
Number of Associated Samples	90
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	55.45 %
% of genes near scaffold ends (potentially truncated)	24.32 %
% of genes from short scaffolds (< 2000 bps)	71.17 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (51.351 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil (12.613 % of family members)
Environment Ontology (ENVO)	Unclassified (35.135 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.865 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.19% β-sheet: 23.23% Coil/Unstructured: 57.58%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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SCOP family	SCOP domain	Representative PDB	TM-score
a.262.1.1: PriB N-terminal domain-like	d1zt2b1	1zt2	0.64117
d.4.1.5: Recombination endonuclease VII, N-terminal domain	d1e7la2	1e7l	0.59002
d.58.53.7: Nucleotide cyclase domains from Cmr2-like	d3w2wa1	3w2w	0.56263
g.39.1.10: Transcription factor grauzone Cg33133-Pa, zinc finger associated domain	d1pzwa_	1pzw	0.56073
b.40.14.1: HupF/HypC-like	d2z1ca1	2z1c	0.54234

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF13840	ACT_7	12.61
PF01596	Methyltransf_3	6.31
PF12688	TPR_5	5.41
PF09587	PGA_cap	4.50
PF13298	LigD_N	2.70
PF00270	DEAD	2.70
PF02353	CMAS	2.70
PF01797	Y1_Tnp	1.80
PF07040	DUF1326	0.90
PF02641	DUF190	0.90
PF13480	Acetyltransf_6	0.90
PF02518	HATPase_c	0.90
PF00437	T2SSE	0.90
PF13533	Biotin_lipoyl_2	0.90
PF03447	NAD_binding_3	0.90
PF00271	Helicase_C	0.90
PF07992	Pyr_redox_2	0.90
PF16576	HlyD_D23	0.90
PF13425	O-antigen_lig	0.90
PF13561	adh_short_C2	0.90
PF00106	adh_short	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	6.31
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	6.31
COG4123	tRNA1(Val) A37 N6-methylase TrmN6	Translation, ribosomal structure and biogenesis [J]	6.31
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	2.70
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	2.70
COG2230	Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases	Lipid transport and metabolism [I]	2.70
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	1.80
COG1993	PII-like signaling protein	Signal transduction mechanisms [T]	0.90
COG5588	Uncharacterized conserved protein, DUF1326 domain	Function unknown [S]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.35 %
Unclassified	root	N/A	48.65 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.35 %
Unclassified	root	N/A	48.65 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.35 %
Unclassified	root	N/A	48.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.65 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	21.62 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.41 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.65 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	21.62 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.41 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.65 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	12.61 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.41 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	3.60 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	2.70 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.65 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	12.61 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.41 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	3.60 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.70 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.65 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	8.11 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.41 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	3.60 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.70 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.65 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	8.11 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.41 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	3.60 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.70 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.65 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	8.11 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.41 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	3.60 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.70 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.65 %
Pedosphaera parvula Ellin514	strain	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	8.11 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.41 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	3.60 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.70 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16582637	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1644	Open in IMG/M
2228664022\|INPgaii200_c0860644	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	931	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101514673	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2135	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101640325	All Organisms → cellular organisms → Bacteria	2556	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101875239	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5131	Open in IMG/M
3300000789\|JGI1027J11758_12909572	Not Available	1375	Open in IMG/M
3300000789\|JGI1027J11758_12996365	Not Available	1330	Open in IMG/M
3300000955\|JGI1027J12803_100366420	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2239	Open in IMG/M
3300000955\|JGI1027J12803_100884302	All Organisms → cellular organisms → Bacteria	2490	Open in IMG/M
3300000955\|JGI1027J12803_101920188	Not Available	720	Open in IMG/M
3300001178\|JGI12646J13576_102568	Not Available	686	Open in IMG/M
3300001545\|JGI12630J15595_10004051	All Organisms → cellular organisms → Bacteria	3181	Open in IMG/M
3300001661\|JGI12053J15887_10001471	All Organisms → cellular organisms → Bacteria	10987	Open in IMG/M
3300002245\|JGIcombinedJ26739_100000244	All Organisms → cellular organisms → Bacteria	26833	Open in IMG/M
3300002245\|JGIcombinedJ26739_100794977	Not Available	826	Open in IMG/M
3300002906\|JGI25614J43888_10000752	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	9176	Open in IMG/M
3300002917\|JGI25616J43925_10018339	All Organisms → cellular organisms → Bacteria	3102	Open in IMG/M
3300002917\|JGI25616J43925_10023840	All Organisms → cellular organisms → Bacteria	2714	Open in IMG/M
3300003219\|JGI26341J46601_10000919	All Organisms → cellular organisms → Bacteria	9441	Open in IMG/M
3300003219\|JGI26341J46601_10040375	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1491	Open in IMG/M
3300003368\|JGI26340J50214_10000221	All Organisms → cellular organisms → Bacteria	20540	Open in IMG/M
3300003505\|JGIcombinedJ51221_10056666	Not Available	1502	Open in IMG/M
3300004092\|Ga0062389_103602010	Not Available	581	Open in IMG/M
3300004092\|Ga0062389_104552803	Not Available	522	Open in IMG/M
3300004152\|Ga0062386_100148531	Not Available	1828	Open in IMG/M
3300005435\|Ga0070714_100925610	Not Available	847	Open in IMG/M
3300005436\|Ga0070713_101415184	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	674	Open in IMG/M
3300005445\|Ga0070708_101515813	Not Available	625	Open in IMG/M
3300005467\|Ga0070706_100051685	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	3793	Open in IMG/M
3300005467\|Ga0070706_100111538	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	2545	Open in IMG/M
3300005536\|Ga0070697_100021219	All Organisms → cellular organisms → Bacteria	5145	Open in IMG/M
3300005921\|Ga0070766_10042956	All Organisms → cellular organisms → Bacteria	2513	Open in IMG/M
3300006028\|Ga0070717_11599120	Not Available	591	Open in IMG/M
3300006052\|Ga0075029_100918573	Not Available	601	Open in IMG/M
3300006173\|Ga0070716_100612952	Not Available	820	Open in IMG/M
3300006175\|Ga0070712_101846536	Not Available	529	Open in IMG/M
3300006176\|Ga0070765_101298448	Not Available	686	Open in IMG/M
3300006854\|Ga0075425_102369170	Not Available	589	Open in IMG/M
3300006893\|Ga0073928_10092806	All Organisms → cellular organisms → Bacteria	2553	Open in IMG/M
3300006893\|Ga0073928_10484512	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300007788\|Ga0099795_10067736	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1340	Open in IMG/M
3300009038\|Ga0099829_11024026	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	685	Open in IMG/M
3300009143\|Ga0099792_11182292	Not Available	518	Open in IMG/M
3300009698\|Ga0116216_10914280	Not Available	525	Open in IMG/M
3300010159\|Ga0099796_10139935	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	945	Open in IMG/M
3300010341\|Ga0074045_10519903	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	764	Open in IMG/M
3300010343\|Ga0074044_10037104	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	3398	Open in IMG/M
3300010343\|Ga0074044_10610469	Not Available	712	Open in IMG/M
3300010371\|Ga0134125_11294028	Not Available	796	Open in IMG/M
3300010379\|Ga0136449_100730735	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1653	Open in IMG/M
3300010379\|Ga0136449_103119924	Not Available	643	Open in IMG/M
3300010859\|Ga0126352_1116621	Not Available	532	Open in IMG/M
3300012096\|Ga0137389_10447937	All Organisms → cellular organisms → Bacteria	1105	Open in IMG/M
3300012203\|Ga0137399_10222757	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1539	Open in IMG/M
3300012205\|Ga0137362_10405709	Not Available	1180	Open in IMG/M
3300012210\|Ga0137378_10427212	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1228	Open in IMG/M
3300012361\|Ga0137360_10947918	Not Available	742	Open in IMG/M
3300012918\|Ga0137396_10327429	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300012923\|Ga0137359_10025035	All Organisms → cellular organisms → Bacteria	5084	Open in IMG/M
3300012923\|Ga0137359_10569893	Not Available	995	Open in IMG/M
3300012925\|Ga0137419_10134100	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	1767	Open in IMG/M
3300012987\|Ga0164307_10760490	Not Available	766	Open in IMG/M
3300020199\|Ga0179592_10481072	Not Available	534	Open in IMG/M
3300020581\|Ga0210399_10144419	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1966	Open in IMG/M
3300021046\|Ga0215015_10641972	Not Available	1963	Open in IMG/M
3300021168\|Ga0210406_10627196	Not Available	836	Open in IMG/M
3300021171\|Ga0210405_10481444	Not Available	974	Open in IMG/M
3300021403\|Ga0210397_10030232	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3377	Open in IMG/M
3300021420\|Ga0210394_10262207	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1513	Open in IMG/M
3300021477\|Ga0210398_11511941	Not Available	522	Open in IMG/M
3300021478\|Ga0210402_11528841	Not Available	595	Open in IMG/M
3300021479\|Ga0210410_10329401	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1370	Open in IMG/M
3300021479\|Ga0210410_10827997	Not Available	811	Open in IMG/M
3300025320\|Ga0209171_10119450	All Organisms → cellular organisms → Bacteria	1583	Open in IMG/M
3300025910\|Ga0207684_10041880	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	3882	Open in IMG/M
3300025910\|Ga0207684_10080854	Not Available	2765	Open in IMG/M
3300025910\|Ga0207684_11426156	Not Available	566	Open in IMG/M
3300025915\|Ga0207693_11041573	Not Available	623	Open in IMG/M
3300026304\|Ga0209240_1046848	Not Available	1633	Open in IMG/M
3300026319\|Ga0209647_1001030	All Organisms → cellular organisms → Bacteria	24706	Open in IMG/M
3300026319\|Ga0209647_1022693	All Organisms → cellular organisms → Bacteria	3843	Open in IMG/M
3300026359\|Ga0257163_1045277	Not Available	700	Open in IMG/M
3300026498\|Ga0257156_1114039	Not Available	562	Open in IMG/M
3300026508\|Ga0257161_1015413	Not Available	1426	Open in IMG/M
3300026508\|Ga0257161_1016799	All Organisms → cellular organisms → Bacteria	1376	Open in IMG/M
3300026551\|Ga0209648_10024828	All Organisms → cellular organisms → Bacteria	5240	Open in IMG/M
3300027546\|Ga0208984_1139643	Not Available	520	Open in IMG/M
3300027610\|Ga0209528_1116123	Not Available	590	Open in IMG/M
3300027616\|Ga0209106_1071024	Not Available	780	Open in IMG/M
3300027663\|Ga0208990_1042675	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	1390	Open in IMG/M
3300027667\|Ga0209009_1015095	All Organisms → cellular organisms → Bacteria	1848	Open in IMG/M
3300027681\|Ga0208991_1001866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6055	Open in IMG/M
3300027681\|Ga0208991_1062729	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	1121	Open in IMG/M
3300027812\|Ga0209656_10004228	All Organisms → cellular organisms → Bacteria	9233	Open in IMG/M
3300027812\|Ga0209656_10429217	Not Available	588	Open in IMG/M
3300027824\|Ga0209040_10037325	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3019	Open in IMG/M
3300027825\|Ga0209039_10234781	Not Available	736	Open in IMG/M
3300027855\|Ga0209693_10372422	Not Available	691	Open in IMG/M
3300027884\|Ga0209275_10782836	Not Available	550	Open in IMG/M
3300027895\|Ga0209624_10543853	Not Available	772	Open in IMG/M
3300028759\|Ga0302224_10037555	All Organisms → cellular organisms → Bacteria	1796	Open in IMG/M
3300028780\|Ga0302225_10036446	All Organisms → cellular organisms → Bacteria	2460	Open in IMG/M
3300029636\|Ga0222749_10007688	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	4358	Open in IMG/M
3300030007\|Ga0311338_10573230	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	1167	Open in IMG/M
3300030054\|Ga0302182_10061419	Not Available	1688	Open in IMG/M
3300031753\|Ga0307477_10710274	Not Available	672	Open in IMG/M
3300031754\|Ga0307475_10863129	Not Available	716	Open in IMG/M
3300031962\|Ga0307479_10259667	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	1716	Open in IMG/M
3300032160\|Ga0311301_10780017	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1319	Open in IMG/M
3300032180\|Ga0307471_101931261	Not Available	739	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.10%
Host-Associated	Host-Associated	0.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.49%
Aquatic	Environmental → Aquatic	12.61%
Plants	Host-Associated → Plants	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.88%
Freshwater	Environmental → Aquatic → Freshwater	9.01%
Peat	Environmental → Terrestrial → Peat	3.60%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.70%
Sediment	Environmental → Aquatic → Sediment	0.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.35%
Loam	Environmental → Terrestrial → Soil → Loam	28.83%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.01%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.60%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.70%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.22%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.22%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.32%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	9.01%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.60%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.70%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	12.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.71%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	9.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.01%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.31%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.60%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.60%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.60%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.60%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.70%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.80%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.90%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001178	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010859	Boreal forest soil eukaryotic communities from Alaska, USA - C5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027546	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02609910	2088090014	Soil	MNMKLSRTTVRKAYPYEGVCEFCGSVSQLNHYDLVLECAVCEECAEDLAKGENELTAAGITSPEHFDGLGS
INPgaii200_08606442	2228664022	Soil	METNMNLSQTTVRKAYPYEGVCEFCGQVDELNYYDLVLECAVCRECAEDLARGENGLTAAGITSPEHFDGLGS
INPhiseqgaiiFebDRAFT_1015146734	3300000364	Soil	MKLSRTTVRKAYPYEGVCEFCGSVSQLNHYDLVLECAVCEECAEDLAKGENELTAAGITSPEHFDGLGS*
INPhiseqgaiiFebDRAFT_1016403253	3300000364	Soil	METNMNLSQTTVRKAYPYEGVCEFCGQVDELNYYDLVLECAVCRECAEDLARGENGLTAAGITSPEHFDGLGS*
INPhiseqgaiiFebDRAFT_1018752395	3300000364	Soil	MKMNLSRTIVKKEHPYLGICEFCGRIRELSYYDSVLECAICKECAEDLASGENALTAAGIRPPDSEHFDGLGS*
JGI1027J11758_129095721	3300000789	Soil	MNLSRTTIRKGYPYHGICEFCGQVRVLNYYDLVLECAVCEDCAVDLASGENELTAAGIASPEPENFDGLGP*
JGI1027J11758_129963651	3300000789	Soil	MNMNLSRTTLKKAHAYCGVCEFCGSVGELSYYDSVLESAVCGECAQDLATGENXLLSAGVVPPGLEDFDGLGP*
JGI1027J12803_1003664203	3300000955	Soil	MNMKLSRTTVRKAYPYEGVCEFCGSVSQLNHYDLVLECAVCEECAEDLAKGENELTAAGITSPEHFDGLGS*
JGI1027J12803_1008843022	3300000955	Soil	MKMNLSRTIVKKEHPYLGICEFCGRIRELSYYDSVLECAICEECAEDLASGENALTAAGIRPPDSEHFDGLGS*
JGI1027J12803_1019201883	3300000955	Soil	IKKAHPYHGICEFCGRVHELSYYDLVLECAVCEECAEDLASGENELIAAGIVSPEPQNFDGLGP*
JGI12646J13576_1025682	3300001178	Forest Soil	MNLSQTTVRKAYPYEGVCEFCGQVDELNYYDLVLECAVCRECAEDLARGENELTAAGITSPEHFDGLGS*
JGI12630J15595_100040515	3300001545	Forest Soil	METNMNLSQTTVRKAYPYEGVCEFCGQVDELNYYDLVLECAVCRECAEDLARGENELTAAGITSPEHFDGLGS*
JGI12053J15887_100014718	3300001661	Forest Soil	METNMNLSQTTVRKAYPYEGVCEFCGQVGELNYYDLVLECAVCRECAEDLARGENELTAAGITSPEHFDGLGS*
JGIcombinedJ26739_1000002448	3300002245	Forest Soil	METNMNLSQTTVRKAYPYEGVCEFCGQVDELNYYDLVLECAVCRECAEDLARGENELTAAXITSPEHFDGLGS*
JGIcombinedJ26739_1007949771	3300002245	Forest Soil	MNLSRTTLKKTHPYDGICEFCGRVDELSYYDSVLECTVCQECAEDLASGENQLAAAGIASPDADNFDGLGS*
JGI25614J43888_100007521	3300002906	Grasslands Soil	MDLSRTTIKKAHPYHGICEFCGRVHVLSYYDLVLECAVCEECAEDLASGENELMAAGIVSPEPENFDGLGP*
JGI25616J43925_100183392	3300002917	Grasslands Soil	MDLSRTTIKKAHPYHGICEFCGRVHVLSYYDLVLECAVCEECAEDLASGENELIAAGIASPEPENFDGLGS*
JGI25616J43925_100238402	3300002917	Grasslands Soil	MDLSRTTIKKAHPYQGICEFCGRVHVLSYYDLVLECAVCEECAEDLASGENELIAAGIVSPEPENFDGLGP*
JGI26341J46601_100009193	3300003219	Bog Forest Soil	MNLSRTTLKKAYSYLGVCEFCGRIGELSYYDSVLECALCRGCAEELANGENELSAAGIASPRPEDFEGLGS*
JGI26341J46601_100403751	3300003219	Bog Forest Soil	MVYSVSDSFAEMNMNLSRTTLKKAHPYHGICEFCGRVLELSYYDFVLECAICEECAEDLATAENALNAAGIPSPGFEYFDGSSS*
JGI26340J50214_1000022126	3300003368	Bog Forest Soil	MNLSRTTLKKAHPYLGVCEFCGRIGELSYYDSLLECAVCRECAQELASGENELTAAGIASPRPEDFEGLGS*
JGIcombinedJ51221_100566664	3300003505	Forest Soil	NSLASFCQSRRAVYSASDSFVETNMNLSRTTLKKAYPYLGICEFCGGILELXYYDFVLECAVCEECAGDLAAGENALAAVGIASPGPEYFDGSGS*
Ga0062389_1036020101	3300004092	Bog Forest Soil	MFSGNCHWLDFVKPNMNLSRTTLKKAHPYHGICEFCGRVRELGYYDSVLECAVCEECAEDLANGENQLAAAGIASPEGENFDGLGP*
Ga0062389_1045528032	3300004092	Bog Forest Soil	MVYSVSDSFAEMNMNLSRTTLKKAYPYHGICEFCGRVLELSYYDSVLECAICEECAEDLANAENALTAAGIPSPGFE*
Ga0062386_1001485311	3300004152	Bog Forest Soil	LGICEFCGGILELGYYDFVLECAVCEECAGDLAAGENALAAAGIALPGPEYFDGSGS*
Ga0070709_108424191	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MNPSQTTLIKAYPHLGICEFCGRVLELSYYDCVLECTVCKQCAEDLASGERALAVAG
Ga0070714_1009256101	3300005435	Agricultural Soil	LVVIEREELSHFLSPTFLINQMDLSRTTIKKAHPYHGICEFCGRVHELSYYDLVLECAVCEECAEDLASGENELIAAGIVSPEPQNFDGLGP*
Ga0070713_1014151842	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MNLSRTTFKKAYPYLGICEFCGGILELSYYDFVLECAVCEECAGDLAAGENALAAVGIASPGPEYFD
Ga0070708_1015158131	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MDLSRTTIKKAHPYHGICEFCGRVHVLSYYDLVLECAVCKECAEDLATGENELIAAGIASPEPENFDGLGP*
Ga0070706_1000516851	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	FLINQMDLSRTTIKKAHPYHGICEFCGRVHVLSYYDLVLECAVCKECAEDLATGENELIAAGIASPEPENFDGLGP*
Ga0070706_1001115381	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MDLSRTTIKKAHPYHGICEFCGRVHELSYYDLVLECAVCEECAEDLASGENELIATGIVSPEPQNFDGLGP*
Ga0070697_1000212194	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MNLSQTTVRKAYPYEGVCEFCGQVGELGYYDLVLECAVCHECAEDLAQGENELIAAGIASPEDFDGLGS*
Ga0070766_100429563	3300005921	Soil	MNLSRTTLKKAYPYLGICEFCGGILELSYYDFVLECAVCEECAGDLAAGENALAAVGIASPGPEYFDGSGS*
Ga0070717_115991201	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MDLSRTTIKKAHPYHGICEFCGRVHELSYYDLVLECAVCEECAEDLASGENELIAAGIVSPEPQNFDGLGP*
Ga0075029_1009185732	3300006052	Watersheds	MVYSVSDSFAEMNMNLSRTTLKKAYPYHGICEFCGRVLELSYYDFVLECAICEECAEDLATAENALAAAGIPSPGSEYFDGSSS*
Ga0070716_1006129522	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LITQMDLSRTTIKKAHPYHGICEFCGRVHVLSYYDLVLECAVCEECAEDLASGENELIAAGIVSPEPENFDGLGP*
Ga0070712_1018465361	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MNPSQTTLKKAHPYHGICEFCGRVGELSYYDAVLECAVCEDCAEDLARGENELAAVGIDSPKAENFDGLGS*
Ga0070765_1012984481	3300006176	Soil	MNLSPTTLKKAHPYHGICEFCGRVLELSYYDSVLECAVCQDCAEDLASGENELAALGIASPGAETFDGLGS*
Ga0075425_1023691702	3300006854	Populus Rhizosphere	MNLSRTTIKKAYPYHGICEFCGHVRVLNYYDLVLECAVCEDCAEDLASGENELTAAGIVSPEPETFDGLGP*
Ga0073928_100928063	3300006893	Iron-Sulfur Acid Spring	MNLSRTTLKKAYPYHGICEFCGRVLELSYYDLVLECAICEECAEDLATAENALTAAGIPSPGFE*
Ga0073928_104845122	3300006893	Iron-Sulfur Acid Spring	MNLSRTTLKKAHPYLGICEFCGGILELSYYDFVLECAVCEECAGDLAAGENALAAVGIASPGPEYFDGSGS*
Ga0099795_100677361	3300007788	Vadose Zone Soil	MNLSQTTVRKAYPYEGVCEFCGQVGELNYYDLVLECAVCRECAEDLARGENELTAAGITSPEHF
Ga0099829_110240262	3300009038	Vadose Zone Soil	MNEFSRRYVFYSASDSFVETNMKLSRTTLKKAYPYLGICEFCGRILELSYYDFVLECAVCEECAGDLAAGENALAAAGIASPGLEYPDGSDS*
Ga0099792_111822921	3300009143	Vadose Zone Soil	LSQTTVRKAYPYEGVCEFCGQVGELNYYDLVLECAVCRECAEDLARGENELTAAGITSPEHFDGLGS*
Ga0116216_109142802	3300009698	Peatlands Soil	FATFCSNSLASFCKSRRVVYSASDSFVESNMKLSRTTLKKAYPYLGICEFCGGILELGYYDFVLECAVCEECAGDLAAGENALAAVGIASPGPEYFDGSGS*
Ga0099796_101399352	3300010159	Vadose Zone Soil	MNLSQTTVRKAYPYEGVCEFCGQVGELNYYDLVLECAVCRECAEDLARGENELTAAGITSPEHFDGLGS*
Ga0074045_105199032	3300010341	Bog Forest Soil	VVYSASASDSFVETNMKLSRTTLKKAYPYLGICEFCGGILELGYYDFVLECAVCEECAGDLAAGENALTAAGIPSPGFEYFGGSSS*
Ga0074044_100371043	3300010343	Bog Forest Soil	VVYSASASDSFVETNMKLSRTTLKKAYPYLGICEFCGGILELGYYDFVLECAVCEECAGDLAAGENALAAVGIASPGPEYFDGSGS*
Ga0074044_106104691	3300010343	Bog Forest Soil	MNLSRTTLKKAHVYLGVCEFCGRIGELSYYDSVLECAVCRECAHELASGENELTAAGIASPRPEDFEGLGS*
Ga0134125_112940281	3300010371	Terrestrial Soil	MNLSRTTLKKAHAYCGVCEFCGSVGELSYYDSVLESAVCRECAQDLATGENELLSAGMVPPGPENFDGLGS*
Ga0136449_1007307352	3300010379	Peatlands Soil	MKLSRTTLKKAYPYLGICEFCGGILELGYYDFVLECAVCEECAGDLAAGENALAAVGIASPGPEYFDGSGS*
Ga0136449_1031199241	3300010379	Peatlands Soil	MVYSVSDSFEEMNMNLSRTTLKKAHPYHGICEFCGRVLELSYYDFVLECAICEECAEDLATAENALTAAGIPSPGFEYFDGSSS*
Ga0126352_11166212	3300010859	Boreal Forest Soil	QMNLSRTTLKKAYPYDGICEFCGRVRQLSYYDTVLECAVCEECAEDLASGENQLAAAGIASPDAEDFDGLGS*
Ga0137389_104479372	3300012096	Vadose Zone Soil	MNEFSRRYVFYSASDSFVETNMKLSRTTQKKAYPYLGICEFCGRILELSYYDFVLECAVCEECAGDLAAGENALAAAGIASPGLEYPDGSDS*
Ga0137399_102227573	3300012203	Vadose Zone Soil	MNLSQTTVRKAYPYEGVCEFCGQVGELNYYDLVLECAVCRECAEDLAKGENELTAAGITFPEHFDGLGS*
Ga0137362_104057092	3300012205	Vadose Zone Soil	MDLSRTTIKKAHPCHGICEFCGRVHVLSYYDLVLECAVCEECAEDLASGENELIAAGIASPEPENFDGLGS*
Ga0137378_104272121	3300012210	Vadose Zone Soil	METNMNLSQTTVRKANPYEGVCEFCGQVDELNYYNLVLECAVCRECAEDLARGENELTAAGITSPEHFDGLGS*
Ga0137360_109479181	3300012361	Vadose Zone Soil	MNLSQTTVRKANPYEGVCEFRGQVDELNYYDLVLECAVCRECAEDLARGENELTAAGITSPEHFDGLGS*
Ga0137396_103274293	3300012918	Vadose Zone Soil	IQLVETNMNLSQTTVRKAYPYEGVCEFCGQVGELNYYDLVLECAVCRECAEDLAKGENELTAAGITFPEHFDGLGS*
Ga0137359_100250355	3300012923	Vadose Zone Soil	MDLSRTTIKKAHPYHGICEFCGRAHVLSYYDLVLECAVCEECAEDLASGENELIAAGIVSPEPENFDGLGP*
Ga0137359_105698931	3300012923	Vadose Zone Soil	METNMNLSQTTVRKANPYEGVCEFCGQVDELNYYDLVLECAVCRECAEDLAKGENELTAAGITFPEHFDGLGS*
Ga0137419_101341003	3300012925	Vadose Zone Soil	MNLSQTTVRKAYPYEGVCEFCGQVGELNYYDLVLECAVCRECAEDLAKGENELTAAGITSPEHFDGLGS*
Ga0164307_107604901	3300012987	Soil	MNPSQTTLKKAYPHLGICEFCGRVLELSYYDCVLECTVCEQCAEDLASGERALAVAGIASPRRKDCDEPDA*
Ga0179592_104810721	3300020199	Vadose Zone Soil	METNMNLSQTTVRKAYPYEGVCEFCGQVDELNYYDLVLECAVCRECAEDLARGENELTAAGITSPEHFDGLGS
Ga0210399_101444191	3300020581	Soil	VETNMNLSRTTLKKAYPYLGICEFCGGILELSYYDFVLECAVCEECAGDLAAGENALAAVGIASPGPEYLDGSGS
Ga0215015_106419721	3300021046	Soil	MKLSRTTLKKAHPYLGICEFCGRVLELSYYDFVLECAVCEECAGDLAAAENALTAAGIASPGPEYFDGSGS
Ga0210406_106271962	3300021168	Soil	MNLSRTTLKKAYPYLGICEFCGGILELSYYDFVLECAVCEECAGDLAAGENALAAVGIASPGPEYLDGSGS
Ga0210405_104814441	3300021171	Soil	TTLKKAHPYHGICEFCGRVLELSYYDSVLECAVCQDCAEDLASGENELAALGIASPGAETFDGLGS
Ga0210397_100302324	3300021403	Soil	MNLSRTTLKKAYPYLGICEFCGGILELSYYDFVLECAVCEECAGDLAAGENALAAVGIASPGPEYFDGSGS
Ga0210394_102622072	3300021420	Soil	VETNMNLSRTTLKKAYPYLGICEFCGGILELSYYDFVLECAVCEECAGDLAAGENALAAVGIASPGPEYFDGSGS
Ga0210398_115119411	3300021477	Soil	MNLSPTTLKKAHPYHGICEFCGRVLELSYYDSVLECAVCQDCAEDLASGENELAALGIASPGAETFDGLGS
Ga0210402_115288411	3300021478	Soil	KKAYPYLGICEFCGRVLELSYYDFVLECAVCEECAGDLAAGENALTAAGIASPGLEYFDGSGS
Ga0210410_103294011	3300021479	Soil	MNLSPTTLKKAHPYHGICEFCGRVLELRYYDSVLECAVCQDCAEDLASGENELAALGIASPGAETFDGLGS
Ga0210410_108279972	3300021479	Soil	MNLSRTTLKKAYPYLGICEFCGGILELSYYDFVLECAVCEECAGDLAAGENALAAVGIAS
Ga0209171_101194502	3300025320	Iron-Sulfur Acid Spring	MQLSRTTVKKAYPYLGICEFCGRVLELSYYDFVLECAVCEECAGDLAAGENALTAAGIASPGLEYFDGSGS
Ga0207684_100418801	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MDLSRTTIKKAHPYHGICEFCGRVHVLSYYDLVLECAVCKECAEDLATGENELIAAGIASPEPENFDGLGP
Ga0207684_100808542	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MDLSRTTIKKAHPYHGICEFCGRVHELSYYDLVLECAVCEECAEDLASGENELIATGIVSPEPQNFDGLGP
Ga0207684_114261561	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MDLSRTTIKKAHPYHGICEFCGRVHVLSYYDLVLECAVCEECAEDLASGENELIAAGIASPEPENFDGLGS
Ga0207693_110415731	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MDLSRTTIKKAHPYQGICEFCGRVHVLSYYDLVLECAVCEECAEDLASGENELIAVGIVSPEPENFDGLGP
Ga0209240_10468483	3300026304	Grasslands Soil	MDLSRTTIKKAHPYHGICEFCGRVHVLSYYDLVLECAVCEECAEDLASGENELMAAGIASPEPENFDGLGS
Ga0209647_100103012	3300026319	Grasslands Soil	MDLSRTTIKKAHPYHGICEFCGRVHVLSYYDLVLECAVCEECAEDLASGENELMAAGIVSPEPENFDGLGP
Ga0209647_10226935	3300026319	Grasslands Soil	MDLSRTTIKKAHPYHGICEFCGRVHVLSYYDLVLECAVCEECAEDLASGENELIAAGI
Ga0257163_10452771	3300026359	Soil	MNLSQTTVRKAYPYEGVCEFCGQVGELSYYDLVLECAVCHQCAQDLANGENELTAAGIT
Ga0257156_11140392	3300026498	Soil	AFSLSNSFLITQMDLSRTTIKKAHPYQGICEFCGRVHVLSYYDLVLECAVCEECAEDLASGENELIAAGIVSPEPENFDGLGP
Ga0257161_10154131	3300026508	Soil	MDLSRTTIKKAHPYQGICEFCGRVHVLSYYDLVLECAVCEECAEDLASGENELIAAGIVS
Ga0257161_10167993	3300026508	Soil	YLGISEYLARIQLVETNMNLSQTTVRKAYPYEGVCEFCGQVGELSYYDLVLECAVCHQCAQDLANGENELTAAGITCPEHFDGLGS
Ga0209648_100248285	3300026551	Grasslands Soil	MDLSRTTIKKAYPYHGICEFCGRVHVLSYYDLVLECAVCEECAEDLASGENELIAAGIASPEPENFDGLGS
Ga0208984_11396431	3300027546	Forest Soil	ETNMNLSQTTVRKAYPYEGVCEFCGQVGELNYYDLVLECAVCRECAEDLARGENELTAAGITSPEHFDGLGS
Ga0209528_11161231	3300027610	Forest Soil	MNLSQTTVRKAYPYEGVCEFCGQVGELSYYDLVLECAVCHQCAQDLANGENELTAAGITCPEHFDGLGS
Ga0209106_10710242	3300027616	Forest Soil	MNLSQTTVRKAYPYEGVCEFCGQVGELNYYDLVLECAVCRECAEDLAKGENELTAAGITFPEHF
Ga0208990_10426752	3300027663	Forest Soil	MNLSQTTVRKAYPYEGVCEFCGQVGELNYYDLVLECAVCRECAEDLARGENELTAAGITSPEHFDGLGS
Ga0209009_10150952	3300027667	Forest Soil	MNLSPTTLKKSHPYHGICEFCGRVLELSYYDSVLECAVCQDCAEDLASGENELAALGIVFPGAETFDGLGS
Ga0208991_10018665	3300027681	Forest Soil	MNLSQTTVRKAYPYEGVCEFCGQVGELNYYDLVLECAVCRECAEDLAKGENELTAAGITFPEHFDGLGS
Ga0208991_10627292	3300027681	Forest Soil	METNMNLSQTTVRKAYPYEGVCEFCGQVGELNYYDLVLECAVCRECAEDLARGENELTAAGITSPEHFDGLGS
Ga0209656_1000422813	3300027812	Bog Forest Soil	MNLSRTTLKKAHPYLGVCEFCGRIGELSYYDSLLECAVCRECAQELASGENELTAAGIASPRPEDFEGLGS
Ga0209656_104292171	3300027812	Bog Forest Soil	QIFATFCSNSLASFCKTRRVVYSASDSLVETNMKLSRTTLKKAYPYLGICEFCGGILELGYYDFVLECAVCEECAGDLAAGENALAAAGIALPGPEYFDGSGS
Ga0209040_100373253	3300027824	Bog Forest Soil	MVYSVSDSFAEMNMNLSRTTLKKAHPYHGICEFCGRVLELSYYDFVLECAICEECAEDLATAENALNAAGIPSPGFEYFDGSSS
Ga0209039_102347811	3300027825	Bog Forest Soil	MNLSRTTLKKAYSYLGVCEFCGRIGELSYYDSVLECALCRGCAEELANGENELSAAGIASPRPEDFEGLGS
Ga0209693_103724222	3300027855	Soil	MNLSRTTLKKAHPYHGVCEFCGRVGELGYYDSVLECAVCQDCAEDLASGENELAAVGIVSPESERFDGLGS
Ga0209275_107828361	3300027884	Soil	MNLSRTTLKKAHPYHGVCEFCGRVGELGYYDSVLECAICEDCAEDLASGENELAAVGIV
Ga0209624_105438532	3300027895	Forest Soil	MNLSRTTLKKAHPYHGICEFCGRVGELGYYDSVLECAVCEECAEDLANGENQLAAAGIAAPEAENFDGLGS
Ga0302224_100375552	3300028759	Palsa	MNLSRTTLKKAHSYHGICEFCGRVDELSYYDTVLECAVCEDCAEDLASGENELSAVGIASPAAEDFDGLGS
Ga0302225_100364462	3300028780	Palsa	MNLSRTTLKKAHSYHGICEFCGRVDELSYYDTVLECAVCEDCAEDLSSGENELSAVGIASPAAEDFDGLGS
Ga0222749_100076884	3300029636	Soil	MNLSRTTLKKAYPYLGICEFCGGILELSYYDFVLECAVCEECAGDLAAGENALTGAGIASPGPEYLDGSGS
Ga0311338_105732301	3300030007	Palsa	MLSDNGNWIDFVEPNMNLSRTTLKKAHPYHGICEFCGRVRELGYYDSVLECAVCEECAEDLANGENQLAAAGIAAPEAENFDGLGS
Ga0302182_100614194	3300030054	Palsa	MNLSRTTLKKAHSYHGICEFCGRVDELSYYDTVLECAVCEDCAEDLASGENELSAVGIA
Ga0307477_107102741	3300031753	Hardwood Forest Soil	PYHGICEFCGRVHVLSYYDLVLECAVCEECAEDLASGENELIAAGIVSPEPENFDGLGP
Ga0307475_108631291	3300031754	Hardwood Forest Soil	YPYLGICEFCGRVLELSYYDFVLECAVCEECAGDLAAGENALTAAGIASPGLEYFDGSGS
Ga0307479_102596673	3300031962	Hardwood Forest Soil	MNLSQTTVCKAYPYEGICEFCGQVGALSYYDLVLECAVCHECAEDLANGENELIAAGITSPEHFDGLGS
Ga0311301_107800172	3300032160	Peatlands Soil	MKLSRTTLKKAYPYLGICEFCGGILELGYYDFVLECAVCEECAGDLAAGENALAAVGIASPGPEYFDGSGS
Ga0307471_1019312611	3300032180	Hardwood Forest Soil	MDLSRTTIKKAHPYHGICEFCGRVHVLSYYDLVLECAVCEECAEDLASGENELIAAGIVSPEPENFDGLGP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086087

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences