Metagenome / Metatranscriptome Family F086079

Basic Information
Family ID	F086079
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	44 residues
Representative Sequence	LRHANVVILTDETEFARLLTACWQAERQAPNITVLSSDSWR
Number of Associated Samples	97
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	19.82 %
% of genes from short scaffolds (< 2000 bps)	16.22 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Most Common Taxonomy
Group	Unclassified (79.279 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.324 % of family members)
Environment Ontology (ENVO)	Unclassified (24.324 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.063 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.54% β-sheet: 0.00% Coil/Unstructured: 72.46%
Feature Viewer

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Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF02954	HTH_8	5.41
PF03640	Lipoprotein_15	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	0.90

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.28 %
All Organisms	root	All Organisms	20.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.28 %
cellular organisms	root	All Organisms → cellular organisms	20.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.28 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	20.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.28 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	18.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.28 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.50 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.28 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.50 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.28 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.50 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.28 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.50 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.28 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.50 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.90 %

Scaffold	Taxonomy	Length	IMG/M Link
3300002912\|JGI25386J43895_10141046	All Organisms → cellular organisms → Bacteria → Acidobacteria	599	Open in IMG/M
3300005447\|Ga0066689_10077296	All Organisms → cellular organisms → Bacteria → Acidobacteria	1859	Open in IMG/M
3300006173\|Ga0070716_100749971	All Organisms → cellular organisms → Bacteria → Acidobacteria	751	Open in IMG/M
3300006755\|Ga0079222_11969246	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300006794\|Ga0066658_10145767	All Organisms → cellular organisms → Bacteria → Acidobacteria	1192	Open in IMG/M
3300010364\|Ga0134066_10382507	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	531	Open in IMG/M
3300011271\|Ga0137393_10531143	All Organisms → cellular organisms → Bacteria → Acidobacteria	1009	Open in IMG/M
3300012351\|Ga0137386_10046219	All Organisms → cellular organisms → Bacteria → Acidobacteria	2997	Open in IMG/M
3300012362\|Ga0137361_11878817	All Organisms → cellular organisms → Bacteria → Acidobacteria	516	Open in IMG/M
3300021086\|Ga0179596_10070696	All Organisms → cellular organisms → Bacteria → Acidobacteria	1513	Open in IMG/M
3300021401\|Ga0210393_10134687	All Organisms → cellular organisms → Bacteria → Acidobacteria	1981	Open in IMG/M
3300021420\|Ga0210394_10135356	All Organisms → cellular organisms → Bacteria → Acidobacteria	2137	Open in IMG/M
3300021559\|Ga0210409_10549974	All Organisms → cellular organisms → Bacteria → Acidobacteria	1020	Open in IMG/M
3300026281\|Ga0209863_10006718	All Organisms → cellular organisms → Bacteria	3801	Open in IMG/M
3300026304\|Ga0209240_1048996	All Organisms → cellular organisms → Bacteria → Acidobacteria	1593	Open in IMG/M
3300026320\|Ga0209131_1411052	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
3300026528\|Ga0209378_1035672	All Organisms → cellular organisms → Bacteria	2564	Open in IMG/M
3300026542\|Ga0209805_1275991	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	644	Open in IMG/M
3300026551\|Ga0209648_10329089	All Organisms → cellular organisms → Bacteria → Acidobacteria	1069	Open in IMG/M
3300027605\|Ga0209329_1009339	All Organisms → cellular organisms → Bacteria → Acidobacteria	1835	Open in IMG/M
3300027857\|Ga0209166_10008353	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6854	Open in IMG/M
3300031753\|Ga0307477_10383152	All Organisms → cellular organisms → Bacteria → Acidobacteria	964	Open in IMG/M
3300031754\|Ga0307475_11360224	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.40%
Host-Associated	Host-Associated	3.60%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.79%
Aquatic	Environmental → Aquatic	3.60%
Plants	Host-Associated → Plants	3.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.89%
Sediment	Environmental → Aquatic → Sediment	2.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.70%
Freshwater	Environmental → Aquatic → Freshwater	0.90%
Peat	Environmental → Terrestrial → Peat	0.90%
Roots	Host-Associated → Plants → Roots	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.38%
Loam	Environmental → Terrestrial → Soil → Loam	10.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.70%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.80%
Lake	Environmental → Aquatic → Freshwater → Lake	0.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	17.12%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.01%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.70%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.70%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.80%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.32%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	23.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.71%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.41%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.50%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.50%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.60%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.70%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.80%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.90%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.90%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.90%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.90%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002681	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF120 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005531	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300024331	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026281	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032275	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0005471J37259_1169352	3300002681	Forest Soil	VRNASVLILSDEPEFARLLTACWQAERLAPGITLLSSDLWKDHEA
JGI25386J43895_101410462	3300002912	Grasslands Soil	LRHANIVILTDETEFARLLTACWQGERQMPAITVLGSDLWNKQEAPAHDL
JGI25617J43924_100589372	3300002914	Grasslands Soil	LRSASVLILTDETDFARLLTACWQAEKHAPGITVLGSDLWR
Ga0062595_1018543642	3300004479	Soil	LPNFNVLILTDETEFARLLTACWQAERQTPAITVLASDLWKEHQDTP
Ga0066689_100772961	3300005447	Soil	LPHANVVILTDESEFARLLTACWQAERQAPNITVLNSNSWREQDAPDHDL
Ga0066689_102980972	3300005447	Soil	LRHANIVILTDETEFARLLTACWQGERQMPAITVLGSDLWNK
Ga0070707_1010575051	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LRHANVVILTDETEFARLLTACWQAERQAPLVTVLTSDLWQEQQA
Ga0070738_101863491	3300005531	Surface Soil	LRHASLLILTDDAEFARLLSACWQAERQAPRITVLSSDL
Ga0070731_105921591	3300005538	Surface Soil	VRSASVLILTDEPEFARLLTACWQAERHAPGITVL
Ga0066707_103568721	3300005556	Soil	LRHANVVILTDDSEFARLLTACWQAERQAPNITVL
Ga0066670_101383201	3300005560	Soil	LRHANVIILTDETEFARLLTACWQAERQAPVITVLT
Ga0066705_106717411	3300005569	Soil	LRSASVLILTDETEFARLLTACWRAERQAPGITVLGTDLWKDH
Ga0070761_110599922	3300005591	Soil	VRSASVLILTDEPEFARLLTACWQAERHAPGITVLSSELW
Ga0070764_100592261	3300005712	Soil	LQNVSVLIVTDEPEFARLLTACWRAERDVPAITVLASDVWNEH
Ga0070716_1007499711	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LPHANVVILTDESEFARLLTACWQAERQAPNITVLNSNSWREQDAPDHDLV
Ga0075014_1001339272	3300006174	Watersheds	LRNANVVILTDETEFARLLTACWQAERLAPNIAVINSDSWREQDAPAH
Ga0075014_1006725251	3300006174	Watersheds	LRHASVVILTDEAEFARLLTACWQAERRAPAVTVLTSDLWKAQEAPVGDLMVLG
Ga0079222_119692461	3300006755	Agricultural Soil	LRQANVVILTDETEFARLLTACWQAERQAPVVTVLTSELWQEQEAPARDLI
Ga0066658_101457671	3300006794	Soil	LRHANVVILTDESEFARLLTACWQAERQAPNITVLNSNSWREQDAPDHDLV
Ga0075434_1005381271	3300006871	Populus Rhizosphere	LPNFTVLILTDETEFARLLTACWQAERQPPAISVLASNLW
Ga0099795_103117841	3300007788	Vadose Zone Soil	LRHANVVILTDETEFARLLTACWQAERQAPNITVLNSGSWREQD
Ga0099828_102228641	3300009089	Vadose Zone Soil	LRNANVVILTDETEFARLLTACWQAERQAPNITVLNSDS
Ga0074044_105434652	3300010343	Bog Forest Soil	LRNANVLILTDEAEFARLLTACWQAERHAPRVTVLNSDVWTAQSGPT
Ga0126370_115554622	3300010358	Tropical Forest Soil	LKNANVVILTDESEFARLLSACWHAERHAPAITVLN
Ga0126377_117627831	3300010362	Tropical Forest Soil	LKHASVLILTDETEFARLLTSCWQTERQAPRITVLNS
Ga0134066_103825072	3300010364	Grasslands Soil	LRHANVVILTDDSEFARLLTACWQAERQAPNIAVLNSDSWHEPNAPAHDLV
Ga0137393_105311431	3300011271	Vadose Zone Soil	LRHANVVILTDETEFARLLTACWQTERQAPNITVLNSDSWREQDAPAHDLV
Ga0137389_104538121	3300012096	Vadose Zone Soil	LRHANVIILTDETEFARLLTAGWQAERQAPRVTVLTSDLWQEQEAPARD
Ga0137389_105466882	3300012096	Vadose Zone Soil	LRHANVVILTDETEFARLLTACWQAERQAPVVTVLTSDLWQEQEAPARD
Ga0137388_119041432	3300012189	Vadose Zone Soil	LRHANVLILTDETEFARLLTACWQAERQAPNITVLNSDSWREQDAPA
Ga0137383_110216872	3300012199	Vadose Zone Soil	LRHANVVILTDETEFARLLTACWQTERQAPGVTVLNSDSWQDQDA
Ga0137380_111923242	3300012206	Vadose Zone Soil	LRHANVVILTDETEFARLLTACWQTERQAPGVTVL
Ga0137386_100462192	3300012351	Vadose Zone Soil	LRHANVVILTDETEFARLLTACWQAERQAPNITVINSDSWQEQNAQEHDLVVV*
Ga0137360_102590312	3300012361	Vadose Zone Soil	LRHANVLILTDETEFARLLTACWQAERQAPSITVIS
Ga0137360_118443121	3300012361	Vadose Zone Soil	LRSASVLILTDETDFARLLTACWQAERHAPGITVL
Ga0137361_118788171	3300012362	Vadose Zone Soil	LRHANVVILTDETEFARLLTACWQAERQAPNITVLNSDSWREQDAPAHDLVVVG
Ga0137398_107391572	3300012683	Vadose Zone Soil	LILTDETDFARLLTACWQAEKHAPGITVLGSDLWRDHETLPH
Ga0137413_113553501	3300012924	Vadose Zone Soil	LVNSNVLIVTDETEFARLLTSCWQAERQAPGITILGSE
Ga0137419_109281872	3300012925	Vadose Zone Soil	LRSASVLILTDETDFARLLTACWQAEKHAPGITVLGSDLWRDHE
Ga0137419_112659581	3300012925	Vadose Zone Soil	LRHANVLVLTDETEFARLLTACWQAERQAPGITVIGSELWREQDVPR
Ga0137418_104507961	3300015241	Vadose Zone Soil	LRHANVVILTDDTEFARLHTACWQAERQPPNITVLNSDLWQEQNTTA
Ga0182034_119674071	3300016371	Soil	LRHANVVILTDETEFARLLTACWQAERHAPRVTVL
Ga0134112_105259591	3300017656	Grasslands Soil	LRHANVVILTDDSEFARLLTACWQAERQAPNITVLNSDSWHEQNAPSH
Ga0137408_14816241	3300019789	Vadose Zone Soil	LANSNVLIVTDETEFARLLTSCWQAERQAPGITILGSELWSEHEEIA
Ga0179594_102845061	3300020170	Vadose Zone Soil	LRHANVVILTDETEFARLLTACWQAERQAPNITVLSSDSWR
Ga0179592_102438251	3300020199	Vadose Zone Soil	LRSASVLILTDETDFARLLTACWQAEKHAPGITVLGSDL
Ga0210407_101110291	3300020579	Soil	LRSASVLILTDETDFARLLTACWQAEKHAPGITVLGSDLWK
Ga0210403_111209382	3300020580	Soil	LRHANVVILTDETEFARLLTACWQAERQAPNITVLN
Ga0210401_106460762	3300020583	Soil	VRNASVLILSDEPEFARLLTACWQAERVAPGITVLSSDLWK
Ga0179596_100706961	3300021086	Vadose Zone Soil	LRNANVIILTDETEFGRLLTACWQTERQAPNITVLSSDLWREQDAPAHDPVVLGP
Ga0210404_100610291	3300021088	Soil	LRHANVVILTDETEFARLLTACWQTERQAPGVTVLTSD
Ga0210404_100640172	3300021088	Soil	LRHANVVILTDETEFARLLTACWQTERQAPNITVLNSDSWREQDAP
Ga0210406_105076701	3300021168	Soil	VRNASVLILSDEPEFARLLTACWQAERLAPGITVLSSDLWK
Ga0210400_107987931	3300021170	Soil	LRHANVVILTDETEFARLLTACWQTERQAPNITVLNSDSWRE
Ga0210400_114847161	3300021170	Soil	LQNSSVLIVTDEPEFARLLTACWRAERDVPAITVLASDVWNEHEAVAHEL
Ga0210405_104858781	3300021171	Soil	VRNASVLILSDEPEFARLLTACWQAERLAPGITVL
Ga0210408_106286942	3300021178	Soil	LRNANVVILTDETEFARLLTACWQAERQAPNIAVVNSDSW
Ga0210388_115289502	3300021181	Soil	VRNASVLILSDEPEFARLLTACWQAERLAPGITVLSSDLWKDHE
Ga0213876_100415601	3300021384	Plant Roots	LQNSSVLIVTDEPEFARLLTACWRAEREVPAITVLGSDVWNEHEGVAHELAVVG
Ga0210393_101346873	3300021401	Soil	LRNANVLILTDESEFARLLTACWQAERQAPGITVLGSESWKQHEAL
Ga0210393_116919312	3300021401	Soil	VRNASVLILSDEPEFARLLTACWQAERLAPGITLLSS
Ga0210385_100640284	3300021402	Soil	LQNFNVLIVTDEPEFARLLTACWRAEREVPAITVLAS
Ga0210397_104970362	3300021403	Soil	LQNVSVLIVTDEPEFARLLTACWRAERDVPAITVLASDVWNEHEG
Ga0210386_101074323	3300021406	Soil	LPNSNALIVTDETEFARLLTSCWQAERQAPAITVLGSD
Ga0210394_101353561	3300021420	Soil	LRHANVVILTDETEFARLLTACWQAERQAPAITVLGSSLWREHEGTSHDLVVV
Ga0210384_105280032	3300021432	Soil	LRSASVLILTDETDFARLLTACWRAEKHAPGITVL
Ga0210390_113156822	3300021474	Soil	LRNANVLILTDDAEFARLLTACWQTERQAPRVAVLSSDL
Ga0210398_101031741	3300021477	Soil	LQNFNVLIVTDEPEFARLLTACWRAEREVPAITVLASDVWNEHEGVAHELAVV
Ga0210410_111430091	3300021479	Soil	LRHANVVILTDETEFARLLTACWQAEPQAPNITVLNSESWQE
Ga0210409_105499741	3300021559	Soil	LRHANVVILTDETEFARLLTACWQAEPQAPNITVLNSESWQKQDAPAHDLV
Ga0242662_101301022	3300022533	Soil	LRNANVLILTDESEFARLLTACWQAERQAPGITVLGSESWK
Ga0137417_10998861	3300024330	Vadose Zone Soil	LRHANVVILTDETEFARLLTACWQAERQAPNQAPNITVLN
Ga0137417_14397063	3300024330	Vadose Zone Soil	MRQQSVILTDETEFARFADGCWQAERQAPNITVLIAIVA
Ga0247668_10052301	3300024331	Soil	MPGSFSPLRHANLLILTDDAEFARLLSACWQAERQAPRITVL
Ga0207671_109072801	3300025914	Corn Rhizosphere	LQNASVLIVTDEPEFARLLTACWRAERDVPAITVLASDVWGEH
Ga0209863_100067181	3300026281	Prmafrost Soil	LANSNVLIVTDETEFARLLTSCWQAERQAPGITVLGSDLWS
Ga0209839_102317881	3300026294	Soil	LRNANVLILTDEAEFARLLTACWQTERQAPRVTVLNSDVWHGQSGPT
Ga0209240_10489961	3300026304	Grasslands Soil	LRNANVVILTDETEFARLLTACWQAERQAPNITVLNSDSWREQEAPAHDLV
Ga0209131_14110521	3300026320	Grasslands Soil	LRNANVVILTDETEFARLLTACWQAERQAPNITVLNSDSWREQEAPAHDLVVV
Ga0209152_103055991	3300026325	Soil	LRNASVLILTDETDFARLLTSCWQADRHAPAITVLGSELWKNHEVA
Ga0209267_11020332	3300026331	Soil	LRHANVVILTDDSEFARLLTACWQAERQAPNITVLNSDSWHE
Ga0209803_11281492	3300026332	Soil	LRHANIVILTDETEFARLLTACWQGERQMPAITVLGSDLWNKQE
Ga0257161_10890912	3300026508	Soil	LRHANVVILTDETEFARLLTACWQAERQAPNITVLNSDSWPEQDTP
Ga0209378_10356724	3300026528	Soil	LRHANVVILTDDSEFARLLTACWQAERQAPNITVLNSDSWHEQNAPSHDLVV
Ga0209056_105739501	3300026538	Soil	LRHASVVILTDETEFARLLTACWQAERHAPAVTVLTSDL
Ga0209805_11572131	3300026542	Soil	LRHANVVILTDDSEFARLLTACWQAERQAPNITVLNS
Ga0209805_12759912	3300026542	Soil	LRHANVVILTDDSEFARLLTACWQAERQAPNIAVLNSDSWHEPNAPAHDLVVVGP
Ga0209648_103290892	3300026551	Grasslands Soil	LRHANVVILTDETEFARLLTACWQAERQAPNITVLNSDSWREQDAPAHDLV
Ga0209648_104976511	3300026551	Grasslands Soil	LRNANVIILTDETEFGRLLTACWHAERQAPNITVLNSDLWR
Ga0209116_10640663	3300027590	Forest Soil	LPNSNVLIVTDETEFARLLTACWQTERQAPGITVLGSDL
Ga0209329_10093391	3300027605	Forest Soil	LRHANVVILTDETEFARLLTACWQAERQAPNITVLNSDSWREQDAPAHDLVVVGP
Ga0209118_11080381	3300027674	Forest Soil	LRSANVLILSDETDFARLLTACWQAERHAPAITVL
Ga0209074_101728491	3300027787	Agricultural Soil	LRHANVVILTDETEFARLLTACWQAERQAPVVTVLTS
Ga0209274_102020091	3300027853	Soil	VRNASVLILTDEPEFARLLTACWQTERQAPGITVLSSELWKDHEATP
Ga0209274_106769771	3300027853	Soil	VRSASVLILTDEPEFARLLTACWQAERHAPGITVLSSELWK
Ga0209693_101933011	3300027855	Soil	LQNFSVLIVTDEPEFARLLTACWRAERDVPAITVLASDVWKEHEGVAHELAVV
Ga0209166_100083536	3300027857	Surface Soil	LRHANVVILTDETEFARLLTACWQADRQAPVVTVLTSDLWQEQQ
Ga0209068_102547271	3300027894	Watersheds	LRNANVVILTDETEFARLLTACWQAERLVPNIAVLNSDSWREQDALVLA
Ga0209488_105684361	3300027903	Vadose Zone Soil	LRHANVVILTDETEFARLLTACWQAERQAPNITVLNSDSWREQEAPTHD
Ga0209006_110486231	3300027908	Forest Soil	LQNSSVLIVTDEPEFARLLTACWRAERDVPAITVLASDVWNE
Ga0137415_105830631	3300028536	Vadose Zone Soil	LRHANVLVLTDETEFARLLTACWQAERQAPGITVIGSE
Ga0137415_110083351	3300028536	Vadose Zone Soil	LANSNVLIVTDETEFARLLTSCWQAERQAPGITILGSELWSEHE
Ga0265338_105921912	3300028800	Rhizosphere	LRNANVLILTDEAEFGRLLSTCWQAERQAPRVTIVDSEH
Ga0222749_106329342	3300029636	Soil	LRHANVVILTDETEFGRLLTACWQAERQAPNITVLNSDSW
Ga0311353_107942451	3300030399	Palsa	LRNANVLILTDEAEFGRLLTTCWRTERQPPRMTILDSDNWHGQE
Ga0307477_103831522	3300031753	Hardwood Forest Soil	LRHANVVILTDETEFARLLTACWQAERQAPNITVLNSDSWREQEAPAHDLVVV
Ga0307475_113602241	3300031754	Hardwood Forest Soil	LRHANVVILTDDTEFARLLTACWQAERQAPNITVLNSDSWHEQDAPALDLIVVGP
Ga0310913_111945921	3300031945	Soil	LRQANVVILTDETEFARLLTACWQAERQAPVVTVLTSDLCQEQQ
Ga0307479_104826012	3300031962	Hardwood Forest Soil	LRSASVLILTDEPDFARLLTACWQAEKHAPGITVLGSDLW
Ga0307479_112779582	3300031962	Hardwood Forest Soil	LRSASVLILTDETDFARLLTACWQAEKHGPGITVMGSD
Ga0315270_111881231	3300032275	Sediment	LRHTNVIVLTDETEFARLLTACWQAERHVPAIAVLNSDLWLRQQHLPCDLLV

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086079

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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