Metagenome Family F086057

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086057
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	46 residues
Representative Sequence	QKLAGKSGQSAHVSVGLSGEVSPRLREELEKRGMTVQDRLVPGPLK
Number of Associated Samples	98
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.80 %
% of genes near scaffold ends (potentially truncated)	95.50 %
% of genes from short scaffolds (< 2000 bps)	94.59 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (16.216 % of family members)
Environment Ontology (ENVO)	Unclassified (38.739 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.243 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.16% β-sheet: 13.51% Coil/Unstructured: 74.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF14023	DUF4239	17.12
PF00248	Aldo_ket_red	7.21
PF01699	Na_Ca_ex	4.50
PF00596	Aldolase_II	1.80
PF13418	Kelch_4	0.90
PF01008	IF-2B	0.90
PF13349	DUF4097	0.90
PF00480	ROK	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	4.50
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	4.50
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	1.80
COG0182	5-methylthioribose/5-deoxyribulose 1-phosphate isomerase (methionine salvage pathway), a paralog of eIF-2B alpha subunit	Amino acid transport and metabolism [E]	0.90
COG1184	Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family	Translation, ribosomal structure and biogenesis [J]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	81.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.41 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	81.98 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.70 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	68.47 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.90 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	68.47 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.90 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	68.47 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.90 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	68.47 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	0.90 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	68.47 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.90 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459002\|FZY7DQ102F2EW4	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	504	Open in IMG/M
2170459024\|GZRSKLJ02H5SBM	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	508	Open in IMG/M
3300004463\|Ga0063356_103001964	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300005093\|Ga0062594_100495219	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M
3300005093\|Ga0062594_100812286	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	867	Open in IMG/M
3300005187\|Ga0066675_11030164	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	617	Open in IMG/M
3300005293\|Ga0065715_10203633	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1341	Open in IMG/M
3300005327\|Ga0070658_11014937	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	722	Open in IMG/M
3300005344\|Ga0070661_100708938	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	820	Open in IMG/M
3300005434\|Ga0070709_10760953	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	757	Open in IMG/M
3300005439\|Ga0070711_100544007	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	962	Open in IMG/M
3300005447\|Ga0066689_10118874	All Organisms → cellular organisms → Bacteria → Proteobacteria	1540	Open in IMG/M
3300005454\|Ga0066687_10269896	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	955	Open in IMG/M
3300005455\|Ga0070663_100231410	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1455	Open in IMG/M
3300005455\|Ga0070663_100885021	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	770	Open in IMG/M
3300005540\|Ga0066697_10118491	All Organisms → cellular organisms → Bacteria → Proteobacteria	1551	Open in IMG/M
3300005540\|Ga0066697_10331205	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	889	Open in IMG/M
3300005543\|Ga0070672_102008550	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	521	Open in IMG/M
3300005575\|Ga0066702_10179419	All Organisms → cellular organisms → Bacteria → Proteobacteria	1272	Open in IMG/M
3300005598\|Ga0066706_11092549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	610	Open in IMG/M
3300005617\|Ga0068859_100075777	All Organisms → cellular organisms → Bacteria	3405	Open in IMG/M
3300005843\|Ga0068860_102026526	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	597	Open in IMG/M
3300006173\|Ga0070716_101353348	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300006797\|Ga0066659_11525263	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300006954\|Ga0079219_12387697	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300009094\|Ga0111539_12999583	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	545	Open in IMG/M
3300009137\|Ga0066709_100721843	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1435	Open in IMG/M
3300010043\|Ga0126380_10122732	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1608	Open in IMG/M
3300010043\|Ga0126380_10674864	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	827	Open in IMG/M
3300010358\|Ga0126370_11607580	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	622	Open in IMG/M
3300010359\|Ga0126376_12666023	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	549	Open in IMG/M
3300010360\|Ga0126372_12574629	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	560	Open in IMG/M
3300010364\|Ga0134066_10082710	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	899	Open in IMG/M
3300010366\|Ga0126379_11271154	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	842	Open in IMG/M
3300010397\|Ga0134124_10194140	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1839	Open in IMG/M
3300010937\|Ga0137776_1403725	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	515	Open in IMG/M
3300012199\|Ga0137383_10762765	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	706	Open in IMG/M
3300012200\|Ga0137382_11218995	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	534	Open in IMG/M
3300012201\|Ga0137365_10909648	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	642	Open in IMG/M
3300012201\|Ga0137365_10938966	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	630	Open in IMG/M
3300012205\|Ga0137362_10982330	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	719	Open in IMG/M
3300012206\|Ga0137380_10725415	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	862	Open in IMG/M
3300012208\|Ga0137376_10520319	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1032	Open in IMG/M
3300012208\|Ga0137376_10803456	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	809	Open in IMG/M
3300012208\|Ga0137376_10875523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	772	Open in IMG/M
3300012208\|Ga0137376_11263372	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	628	Open in IMG/M
3300012361\|Ga0137360_10535038	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1000	Open in IMG/M
3300012361\|Ga0137360_11889818	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M
3300012519\|Ga0157352_1038148	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	668	Open in IMG/M
3300012685\|Ga0137397_10145516	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1754	Open in IMG/M
3300012917\|Ga0137395_10364289	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M
3300012922\|Ga0137394_10119890	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2226	Open in IMG/M
3300012923\|Ga0137359_10355247	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1302	Open in IMG/M
3300012929\|Ga0137404_11260757	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	681	Open in IMG/M
3300012951\|Ga0164300_10377657	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	771	Open in IMG/M
3300012957\|Ga0164303_10811994	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	645	Open in IMG/M
3300012961\|Ga0164302_11926874	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M
3300012971\|Ga0126369_10333436	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1532	Open in IMG/M
3300012985\|Ga0164308_10168682	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1638	Open in IMG/M
3300012987\|Ga0164307_10927326	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	703	Open in IMG/M
3300013296\|Ga0157374_10421136	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1334	Open in IMG/M
3300015054\|Ga0137420_1144702	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1063	Open in IMG/M
3300015371\|Ga0132258_13528089	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1071	Open in IMG/M
3300015373\|Ga0132257_101150880	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300015373\|Ga0132257_104229874	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	522	Open in IMG/M
3300015374\|Ga0132255_100381334	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2049	Open in IMG/M
3300016270\|Ga0182036_10836797	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	751	Open in IMG/M
3300016270\|Ga0182036_11129232	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	650	Open in IMG/M
3300016294\|Ga0182041_11167381	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	701	Open in IMG/M
3300016357\|Ga0182032_10446083	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1055	Open in IMG/M
3300016445\|Ga0182038_10852184	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	801	Open in IMG/M
3300018028\|Ga0184608_10277467	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300018051\|Ga0184620_10316801	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	527	Open in IMG/M
3300018054\|Ga0184621_10262752	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	613	Open in IMG/M
3300018433\|Ga0066667_11165996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	669	Open in IMG/M
3300019361\|Ga0173482_10172393	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	863	Open in IMG/M
3300019867\|Ga0193704_1072019	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	647	Open in IMG/M
3300019879\|Ga0193723_1037106	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1456	Open in IMG/M
3300019879\|Ga0193723_1095898	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	841	Open in IMG/M
3300019885\|Ga0193747_1155774	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300019998\|Ga0193710_1007659	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1086	Open in IMG/M
3300020018\|Ga0193721_1005693	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3256	Open in IMG/M
3300021560\|Ga0126371_13612365	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	522	Open in IMG/M
3300021968\|Ga0193698_1049205	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	543	Open in IMG/M
3300022756\|Ga0222622_10091119	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1850	Open in IMG/M
3300025905\|Ga0207685_10329630	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	764	Open in IMG/M
3300025916\|Ga0207663_11129684	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	630	Open in IMG/M
3300025921\|Ga0207652_10762751	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	860	Open in IMG/M
3300025926\|Ga0207659_10463030	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300025927\|Ga0207687_10204132	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1547	Open in IMG/M
3300025927\|Ga0207687_11372634	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	607	Open in IMG/M
3300025930\|Ga0207701_10908263	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	737	Open in IMG/M
3300025938\|Ga0207704_10819763	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	778	Open in IMG/M
3300025961\|Ga0207712_10063692	All Organisms → cellular organisms → Bacteria	2626	Open in IMG/M
3300025986\|Ga0207658_10094398	All Organisms → cellular organisms → Bacteria	2328	Open in IMG/M
3300026121\|Ga0207683_11581574	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	605	Open in IMG/M
3300026322\|Ga0209687_1105296	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	914	Open in IMG/M
3300026329\|Ga0209375_1147366	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	997	Open in IMG/M
3300026332\|Ga0209803_1121943	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1041	Open in IMG/M
3300026527\|Ga0209059_1267095	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	576	Open in IMG/M
3300026529\|Ga0209806_1271044	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	570	Open in IMG/M
3300026542\|Ga0209805_1215342	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300028793\|Ga0307299_10106381	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1050	Open in IMG/M
3300031057\|Ga0170834_109666941	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	504	Open in IMG/M
3300031122\|Ga0170822_13500933	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	553	Open in IMG/M
3300031716\|Ga0310813_11745722	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	584	Open in IMG/M
3300031719\|Ga0306917_10232889	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1406	Open in IMG/M
3300031939\|Ga0308174_11609530	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	558	Open in IMG/M
3300032001\|Ga0306922_12118026	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	545	Open in IMG/M
3300032261\|Ga0306920_102143353	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	779	Open in IMG/M
3300033158\|Ga0335077_11677606	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	602	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.18%
Host-Associated	Host-Associated	19.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.68%
Plants	Host-Associated → Plants	19.82%
Aquatic	Environmental → Aquatic	4.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.81%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.01%
Sediment	Environmental → Aquatic → Sediment	3.60%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.37%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.31%
Loam	Environmental → Terrestrial → Soil → Loam	5.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.60%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.90%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.90%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.54%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.22%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.60%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.70%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.90%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.21%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.50%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.60%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.60%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.80%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.90%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.90%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.90%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
2170459024	Grass soil microbial communities from Rothamsted Park, UK - FD1 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012519	Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300019998	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m1	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021968	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E1_04123850	2170459002	Grass Soil	AGFTDDVQKLAAKSGQSAHVSVGLSGEVSPRLREELEKRGMTVQDRLVPGPLK
FD1_07544840	2170459024	Grass Soil	HVFVGLSGEVSPRLREELEKRGMTVQDRLVPGPLK
Ga0063356_1030019641	3300004463	Arabidopsis Thaliana Rhizosphere	KSGQNAHVFVGLSGQVSPRLREELEKRGMTVQDRLVPGPLK*
Ga0062594_1004952191	3300005093	Soil	DDVQKLAAKSGQNAHVSVDLSGEVSPRLREELEKRRMTLQDRLVPGPLK*
Ga0062594_1008122862	3300005093	Soil	QSGQTKKIVVALSGQVSPRLREELEKRDMTVRDRLVPGPLK*
Ga0066675_110301641	3300005187	Soil	KSGQNAHVFVGLSGEVSPRLRQELEKRGMIVQDRLVPGPLK*
Ga0065715_102036333	3300005293	Miscanthus Rhizosphere	KSGQNAHISVDLSGEVSPRLREELEKRGMTVQDRLVPGPLK*
Ga0070658_110149371	3300005327	Corn Rhizosphere	QKLSGKSGQSPHVSVGLSGEASPRLHQELEKRGITLQDRLVPGPLR*
Ga0070661_1007089381	3300005344	Corn Rhizosphere	AWTAGAASFTDDLQKLSGKSCQSAHISIDLSGQVSPRLREELEKRGITLQDRLVLGPLK*
Ga0070709_107609531	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	QKLAGKSGQSAHVSVDLSGEVSPRLREELEKRGMIVQDRLVPGPLK*
Ga0070711_1005440071	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	KLAGKSGQSAHVSVDLSGEVSPRLREELEKRGMIVQDRLVPGPLK*
Ga0066689_101188743	3300005447	Soil	TDEVQKFAEKSGQGAHVFVGLPGQISPRLREELENRGITTQGRLVPGPLN*
Ga0066687_102698962	3300005454	Soil	VQKFAGKSGQGAHVFVGLSGEVSPRLRGELEQRGMTVQDRLVPGPLN*
Ga0070663_1002314101	3300005455	Corn Rhizosphere	KSGQSAHISVDLSGEVSPLLRAELEKRGMTVQDRLVPGPLK*
Ga0070663_1008850212	3300005455	Corn Rhizosphere	CQSAHISIDLSGQVSPRLREELEKRGITLQDRLVLGPLK*
Ga0066697_101184913	3300005540	Soil	KLAGKSGQNAHVLVGLSGEVSPRLREELEKRGMTVQDRLVSGPLK*
Ga0066697_103312051	3300005540	Soil	KLAGKSGQNAHVLVGLSGEVSPRLREELEKRGMTVQDRLVPGPLK*
Ga0070672_1020085501	3300005543	Miscanthus Rhizosphere	GQNVHMFVGLSGEISPRLREELEKRSVTVQDRLVPGPLK*
Ga0066702_101794193	3300005575	Soil	FTDEVQKFAGKSGQGAHVFVGLSGEVSPRLRGELEQRGMTVQDRLVPGPLN*
Ga0066706_110925492	3300005598	Soil	AEKSGQGAHVFVGLSGQVSPRLREELEKRGITVQDRLVPGPLK*
Ga0068859_1000757771	3300005617	Switchgrass Rhizosphere	KLAGKSGQSAHISIDLSGQVSPRLREELEKRGITLQDRLVLGPLK*
Ga0068860_1020265261	3300005843	Switchgrass Rhizosphere	VSVGLSGEVSPRLREELEKRGMTVQDRLVPGPLK*
Ga0070716_1013533481	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	SFTDDVQKLAAKSGQSAHVFVGLSGEVSPRLRQELEKRGMTVQDRLVPGPLK*
Ga0066659_115252631	3300006797	Soil	KSGQSTHVSVDLSGEVSPRLREELEKRGMTVQDRLVPGPLK*
Ga0079219_123876971	3300006954	Agricultural Soil	KSGQNTHVSVELSGQVSPRLRQELEKRGMTVHERLAAGPLK*
Ga0111539_129995832	3300009094	Populus Rhizosphere	KSGQSAHVFVGLSGEVSPRLREELEKRGMTVQDRLVPGPLK*
Ga0066709_1007218433	3300009137	Grasslands Soil	FTSDVQKRAAQSGENKNILVALSGQVPPRLREELEKRGFTVQERFVPGPLK*
Ga0126380_101227321	3300010043	Tropical Forest Soil	KLAGKSGQRAHISVDLSGEVSPRLREELQKREITVQDRLVPGPLK*
Ga0126380_106748641	3300010043	Tropical Forest Soil	QKLAGKSGQSTHVSIDLSGEVSPRLREELEKRGMTVQDRLVPGPLK*
Ga0126370_116075801	3300010358	Tropical Forest Soil	SFTDEVQKFAGKSGQSTHISVDLSGEVSPRLREELEKRGITVQDRLVPGPLK*
Ga0126376_126660232	3300010359	Tropical Forest Soil	DEVQKVAAKSGPTAHVSVDLSGEVSPRLREELEKRGISVQDRLVPGPLK*
Ga0126372_125746291	3300010360	Tropical Forest Soil	AGKSGQRAHISVDLSGEVSPRLREELQKRGITVQDRLVPGPLK*
Ga0134066_100827102	3300010364	Grasslands Soil	KSGQGAHVFVGLSGEVSPRLRGELEQRGMTVQDRLVPGPLN*
Ga0126379_112711541	3300010366	Tropical Forest Soil	SFTDDVQRLAGKSGQSAHVSVDLSGEISPRLREELEKRGMTVQDRLVPGPLK*
Ga0134124_101941401	3300010397	Terrestrial Soil	KLAGKSGQNAHISVDLSGEVSPRLREELEKRGMTVQDRLVPGPLK*
Ga0137776_14037252	3300010937	Sediment	QKLAGKSGQSAHVSVDLSGEVSPRLRAELEKRGMTVQDRLIPGPLK*
Ga0137383_107627651	3300012199	Vadose Zone Soil	SGQSAHVAVGLSGEVSPRLREELEKRGMTVQDRLVPGPLK*
Ga0137382_112189952	3300012200	Vadose Zone Soil	GKSGQSAHVSVDLSGELSPRLREELEKRGMIVQDRLVPGPLK*
Ga0137365_109096482	3300012201	Vadose Zone Soil	ASFTGDVLKLAGKSGQNARISVDLSGEVSPRLREELEKRGITVQDRLVPGPLK*
Ga0137365_109389662	3300012201	Vadose Zone Soil	KSGQNAHVFVGLSGEVSPRLREELEKRGMIVQDRLVPGPLK*
Ga0137362_109823302	3300012205	Vadose Zone Soil	AASFTDEVQKFAGKSGQSAHVSVGLSGEVSTRLREELEKRGMTVQDRLVPGPLK*
Ga0137380_107254152	3300012206	Vadose Zone Soil	GKSGQGAHVSVGLSGEVSPRLREELEKRGMIVQDRLVPGPLK*
Ga0137376_105203191	3300012208	Vadose Zone Soil	QSGQSGHVFVGLSGEVSARLRKELEKRGMTVQDRLVPGPLN*
Ga0137376_108034562	3300012208	Vadose Zone Soil	GQVAHVFVGLSGEVSPRLREELQKRGITIQDRLVPGPLSPAT*
Ga0137376_108755231	3300012208	Vadose Zone Soil	EKSGQGAHVFVGLSGQVSPRLREELEKRGITVQDRLVPGPLK*
Ga0137376_112633721	3300012208	Vadose Zone Soil	QSGQSGHVFVGLSGEVSARLRKELEKRGMTVQDRLVPGPLK*
Ga0137360_105350381	3300012361	Vadose Zone Soil	GQSAHVSVGLSGEVSPRLREELEKRGMTVQDRLVPGPLK*
Ga0137360_118898181	3300012361	Vadose Zone Soil	GAHVFVGLSGEVSPRLRGELEKRGMTVQDRLVPGPLN*
Ga0157352_10381482	3300012519	Unplanted Soil	AQFTNDVQKLAAQSGQTKKIVVALSGQVSPRLREELEKRGMTVRDRLVPGPLK*
Ga0137397_101455164	3300012685	Vadose Zone Soil	SAHVSVGLSGELSLRLREELEKRGMIVQDRLVPGPLK*
Ga0137395_103642893	3300012917	Vadose Zone Soil	TNDVQKLAAQSGKATNVLVALSGQVSPRLRQELETRGFTVHDRLVPGPLK*
Ga0137394_101198904	3300012922	Vadose Zone Soil	GAAQFTSDLQKLATQSGEKKNILVALSGQISARLREELEKRGITVQDRLVPGPLK*
Ga0137359_103552472	3300012923	Vadose Zone Soil	TGKSGQNAHVFVGLSGEVSPRLHQELEKRGMTVQDRLVPGPLK*
Ga0137404_112607571	3300012929	Vadose Zone Soil	SGQSAHVSVDLSGEVSPRLREELEKRGMTVQDRLVPGPLK*
Ga0164300_103776572	3300012951	Soil	DVQKLAAQSAQNKKIVVALSGQVSPRLREELEKRGMTVRDRLVAGPLK*
Ga0164303_108119941	3300012957	Soil	SGAAQFVTDVQKLAAQSAQNKKIVVALSGQVSPRLREELEKRGMTVRDRLVAGPLK*
Ga0164302_119268742	3300012961	Soil	AHVSVGLSGEISPRLREELEKRGMTVQDRLVPGPLK*
Ga0126369_103334361	3300012971	Tropical Forest Soil	SGQNVHVSVDLSGEVSPRLREELEKRGMIVQDRVVPGPLK*
Ga0164308_101686823	3300012985	Soil	VQKLAAQSAQNKKIVVALSGQVSPRLREELEKRGMTVRDRLVAGPLK*
Ga0164307_109273261	3300012987	Soil	GAAQFTEEVQKIAAQSGQTKKIVVALSGQISPRLREELEKRDMTVRDRLVPGPLK*
Ga0157374_104211361	3300013296	Miscanthus Rhizosphere	HISVHLSGEVSPRLRAELEKRGMTVEDRLVPGPLK*
Ga0137420_11447023	3300015054	Vadose Zone Soil	KSGQSAHVSVGLSGEVSPRLREELEKRGMIVQDRLVPGPLK*
Ga0132258_135280893	3300015371	Arabidopsis Rhizosphere	DVQKLAAKSGQNAHVSVDLSGEVSPRLREELEKRRMTLQDRLVPGPLK*
Ga0132257_1011508801	3300015373	Arabidopsis Rhizosphere	AWTAGAASFTDDVKKLAGKSGQSAHITVDLSGEVSPRLREELEKRGMTVQDRLVPGPLK*
Ga0132257_1042298742	3300015373	Arabidopsis Rhizosphere	AAQGGQTKKIVVALSGQVSPRLREDLEKRGITVQDRLVPGPLK*
Ga0132255_1003813341	3300015374	Arabidopsis Rhizosphere	HVSVDLSGEVSPRLREELEKRRMTLQDRLVPGPLK*
Ga0182036_108367971	3300016270	Soil	AKSGQSAHISVNLSGQVSPLLREQLQNLGITVQDRLVPGPLK
Ga0182036_111292321	3300016270	Soil	KFAGKSGQGAHVTVDLSGDVSPRLREELEKRGITIQDQLVSGPLK
Ga0182041_111673811	3300016294	Soil	VQKLAAKSGQNAHVSVDLSGEVSARLREELEKRRMTVQDRLVPGPLK
Ga0182032_104460831	3300016357	Soil	AQKLAAKSAQNAHVSVDLSGQVSPRLREELEKRGMTVQDRLVPGPLK
Ga0182038_108521843	3300016445	Soil	KSGQGAHVTVDLSGDVSPRLRDELEKRVMTVQDRLVSGPLK
Ga0184608_102774672	3300018028	Groundwater Sediment	VQKLAAKAGKNKNALVALSGQVSSRLREELEKRGFMVRDRLVPGPLK
Ga0184620_103168011	3300018051	Groundwater Sediment	SFTDEVQKFAANSGQNAHVSVDLSGEVSPRLREELEKRGMTVQDRLVPGPLK
Ga0184621_102627522	3300018054	Groundwater Sediment	VQKLAAKAGKNKNALVALSGQVSSPLREELEKRGFMVRDRLVPGPLK
Ga0066667_111659962	3300018433	Grasslands Soil	GAAAFTDEVQKFAEKSGQGAHVFVGLSGQVSPRLREELEKRGITVQDRLVPGPLK
Ga0173482_101723933	3300019361	Soil	YAAWTAAAASFTDEVKKSAGKSGQSAHVSVDLSGEISPRLREELEKRRMTLQDRLVPGPL
Ga0193704_10720192	3300019867	Soil	KLAGKSGQSAHVSVGLSGQVSPRLREELEKRGMTVQDRLVPGPLK
Ga0193723_10371063	3300019879	Soil	DVQKLAAKSDQSAHVSVGLSGEVSPRLREELEKRGMTVQDRLVPGPLK
Ga0193723_10958981	3300019879	Soil	GQSARVFFGLSGEVSPRLREELEKRGMTVQDRLAPGPLK
Ga0193747_11557741	3300019885	Soil	GAAGFTNDVQKLAAQSGKNPNGLVALSGQVSPRLRQELETRGFTVHDRLVPGPLK
Ga0193710_10076593	3300019998	Soil	HVSVGLSGEVSPRLREELEKRGMTVQDRLVPGPLK
Ga0193721_10056933	3300020018	Soil	MQKLAAQSGKNKNVFVALSGEVSPRLRQELETRGVTVQDRLLPGPLK
Ga0126371_136123652	3300021560	Tropical Forest Soil	VQKFAGKSEGAHIFVGLSGDVSPRLREELETRGMTVQDRLVPGPLK
Ga0193698_10492052	3300021968	Soil	QKLAGKSGQSAHVSVGLSGEVSPRLREELEKRGMTVQDRLVPGPLK
Ga0222622_100911194	3300022756	Groundwater Sediment	SGQTAQVSVGLSGEVSPRLREELEKRGMTVQDRLVPGPLK
Ga0207685_103296302	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	AHISVDLSGEVSPRLREELEKRGMTVQDRLVPGPLK
Ga0207663_111296842	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	AGKSGQNAHISVDLSGEVSPRLREELEKRGMTVQDRLVPGPLK
Ga0207652_107627512	3300025921	Corn Rhizosphere	GKSGQSPHVSVGLSGEASPRLHQELEKRGITLQDRLVPGPLR
Ga0207659_104630303	3300025926	Miscanthus Rhizosphere	ASFTDDVQKLSGKSCQSAHISIDLSGQVSPRLREELEKRGITLQDRLVLGPLK
Ga0207687_102041321	3300025927	Miscanthus Rhizosphere	KIAAQSGQTKKIVVALSGQVSPRLREELEKRDMTVRDRLVPGPLK
Ga0207687_113726341	3300025927	Miscanthus Rhizosphere	QKIAAQSGQTKKIVVALSGQVSPRLREELEKRDMTVRDRLVPGPLK
Ga0207701_109082631	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VQKVAGKSGQSAHISVDLSGEVSPRLRAELEKRGMTVQDRLVPGPLK
Ga0207704_108197632	3300025938	Miscanthus Rhizosphere	GQSPHVSVGLSGEASPRLHQELEKRGITLQDRLVPGPLR
Ga0207712_100636921	3300025961	Switchgrass Rhizosphere	QKLAGKSGQSAHISIDLSGQVSPRLREELEKRGITLQDRLVPGPLK
Ga0207658_100943981	3300025986	Switchgrass Rhizosphere	KLSGKSCQSAHISIDLSGQVSPRLREELEKRGITLQDRLVLGPLK
Ga0207683_115815741	3300026121	Miscanthus Rhizosphere	DMQKRAAKSGQNVHMFVGLSGEISPRLREELEKRSITVQDRLVPGPLK
Ga0209687_11052962	3300026322	Soil	AASFTDEVQKFAGKSGQGAHVFVGLSGEVSPRLRGELEQRGMTVQDRLVPGPLN
Ga0209375_11473661	3300026329	Soil	LAEKSGQSGHVFIGLSGQISPRLREELEKRGITVQDRLAPGPLK
Ga0209803_11219431	3300026332	Soil	AFTDEVQKFAEKSGQGAHVFVGLPGQISPRLREELENRGITTQGRLVPGPLN
Ga0209059_12670951	3300026527	Soil	AWTLAAASFTDEVQKFAGKSGQGAHVFVGLSGEVSPRLRGELEQRGMTVQDRLVPGPLN
Ga0209806_12710442	3300026529	Soil	AWTLGAASFTDEVQKFAGKSGQGAHVFVGLSGEVSPRLRGELEQRGMTVQDRLVPGPLN
Ga0209805_12153422	3300026542	Soil	AGFTDEAQKLADKSGQGAHLFVGLSGQVSPRLRQELEARGFTVHDRLAQGPLK
Ga0307299_101063812	3300028793	Soil	DVQKLAAKSGQSAHVFVGLSGEVSPRLREELEKRGMTVQDRLVPGPLK
Ga0170834_1096669412	3300031057	Forest Soil	GKSGHGAHVTVDLSGEVSPRLREELEKRGMTVQDRLVPGPLK
Ga0170822_135009332	3300031122	Forest Soil	AAAFTGEVQKFAGKSGHGAHVTVDLSGEVSPRLREELEKRGMTVQDRLVPGPLK
Ga0310813_117457221	3300031716	Soil	VQKLAAQSAQNKKIVVALSGQVSPRLREELEKRGMTVRDRLVAGPLK
Ga0306917_102328891	3300031719	Soil	VQKFAGKSGQGAHVTVDLSGDVSPRLRDELEKRGMTVQDRLVSGPLK
Ga0308174_116095302	3300031939	Soil	GAAQFTEDVRKIAAQSGQTKKIVVALSGQVSPRLREELEKRDMTVRDRLVPGPLK
Ga0306922_121180261	3300032001	Soil	SGQSAHISVNLSGQVSPLLREQLQNLGITVQDRLVPGPLK
Ga0306920_1021433531	3300032261	Soil	AHISVDLSGEISPRLRDELEKRGITVQDRLVPGPLK
Ga0335077_116776061	3300033158	Soil	FTSDVQKLAAQSGENKNILVALSGQVSPRLREELEKRSITVQDRLVPGPLK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F086057

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences