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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F086045 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 111 |
| Average Sequence Length | 47 residues |
| Representative Sequence | MEQHVSWLTQFVNHYLGGLALALLSALHIKPSHPELPIPEHVVMA |
| Number of Associated Samples | 97 |
| Number of Associated Scaffolds | 111 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 100.00 % |
| % of genes near scaffold ends (potentially truncated) | 0.90 % |
| % of genes from short scaffolds (< 2000 bps) | 0.90 % |
| Associated GOLD sequencing projects | 92 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.33 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (99.099 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (18.018 % of family members) |
| Environment Ontology (ENVO) | Unclassified (25.225 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (54.054 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 38.36% β-sheet: 0.00% Coil/Unstructured: 61.64% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.33 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 111 Family Scaffolds |
|---|---|---|
| PF03899 | ATP-synt_I | 70.27 |
| PF09527 | ATPase_gene1 | 11.71 |
| PF00361 | Proton_antipo_M | 8.11 |
| PF14748 | P5CR_dimer | 4.50 |
| PF02347 | GDC-P | 0.90 |
| PF00578 | AhpC-TSA | 0.90 |
| PF00119 | ATP-synt_A | 0.90 |
| PF00137 | ATP-synt_C | 0.90 |
| PF03241 | HpaB | 0.90 |
| COG ID | Name | Functional Category | % Frequency in 111 Family Scaffolds |
|---|---|---|---|
| COG3312 | FoF1-type ATP synthase accessory protein AtpI | Energy production and conversion [C] | 70.27 |
| COG0356 | FoF1-type ATP synthase, membrane subunit a | Energy production and conversion [C] | 0.90 |
| COG0403 | Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain | Amino acid transport and metabolism [E] | 0.90 |
| COG0636 | FoF1-type ATP synthase, membrane subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K | Energy production and conversion [C] | 0.90 |
| COG1003 | Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain | Amino acid transport and metabolism [E] | 0.90 |
| COG2368 | Aromatic ring hydroxylase | Secondary metabolites biosynthesis, transport and catabolism [Q] | 0.90 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 99.10 % |
| All Organisms | root | All Organisms | 0.90 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300012986|Ga0164304_10447703 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 930 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 18.02% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 12.61% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 10.81% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 9.91% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 8.11% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 5.41% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 4.50% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 4.50% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 3.60% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 3.60% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.80% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 1.80% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 1.80% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 1.80% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere | 1.80% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 0.90% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 0.90% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 0.90% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.90% |
| Arctic Peat Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil | 0.90% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 0.90% |
| Rice Paddy Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil | 0.90% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 0.90% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 0.90% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.90% |
| Sediment | Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment | 0.90% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000793 | Forest soil microbial communities from Amazon forest - 2010 replicate II A001 | Environmental | Open in IMG/M |
| 3300001593 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 | Environmental | Open in IMG/M |
| 3300002245 | Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027) | Environmental | Open in IMG/M |
| 3300002914 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm | Environmental | Open in IMG/M |
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Environmental | Open in IMG/M |
| 3300005444 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG | Environmental | Open in IMG/M |
| 3300005445 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG | Environmental | Open in IMG/M |
| 3300005446 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 | Environmental | Open in IMG/M |
| 3300005546 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG | Environmental | Open in IMG/M |
| 3300005549 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG | Environmental | Open in IMG/M |
| 3300005555 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 | Environmental | Open in IMG/M |
| 3300005561 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 | Environmental | Open in IMG/M |
| 3300005568 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 | Environmental | Open in IMG/M |
| 3300005591 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 | Environmental | Open in IMG/M |
| 3300005602 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 | Environmental | Open in IMG/M |
| 3300005610 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 | Environmental | Open in IMG/M |
| 3300005883 | Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_302 | Environmental | Open in IMG/M |
| 3300006050 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014 | Environmental | Open in IMG/M |
| 3300006162 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 | Environmental | Open in IMG/M |
| 3300006173 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG | Environmental | Open in IMG/M |
| 3300006176 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 | Environmental | Open in IMG/M |
| 3300006797 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108 | Environmental | Open in IMG/M |
| 3300007258 | Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 | Environmental | Open in IMG/M |
| 3300009137 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158 | Environmental | Open in IMG/M |
| 3300009792 | Tropical forest soil microbial communities from Panama - MetaG Plot_12 | Environmental | Open in IMG/M |
| 3300010359 | Tropical forest soil microbial communities from Panama - MetaG Plot_15 | Environmental | Open in IMG/M |
| 3300010400 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 | Environmental | Open in IMG/M |
| 3300010401 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1 | Environmental | Open in IMG/M |
| 3300011271 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG | Environmental | Open in IMG/M |
| 3300012189 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG | Environmental | Open in IMG/M |
| 3300012208 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG | Environmental | Open in IMG/M |
| 3300012211 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG | Environmental | Open in IMG/M |
| 3300012349 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG | Environmental | Open in IMG/M |
| 3300012351 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG | Environmental | Open in IMG/M |
| 3300012363 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG | Environmental | Open in IMG/M |
| 3300012918 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG | Environmental | Open in IMG/M |
| 3300012922 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG | Environmental | Open in IMG/M |
| 3300012923 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG | Environmental | Open in IMG/M |
| 3300012924 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012925 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012977 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG | Environmental | Open in IMG/M |
| 3300012986 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG | Environmental | Open in IMG/M |
| 3300014638 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG | Environmental | Open in IMG/M |
| 3300015051 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300017936 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1 | Environmental | Open in IMG/M |
| 3300018058 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG | Environmental | Open in IMG/M |
| 3300018482 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118 | Environmental | Open in IMG/M |
| 3300020199 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300020581 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M | Environmental | Open in IMG/M |
| 3300020582 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O | Environmental | Open in IMG/M |
| 3300021171 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M | Environmental | Open in IMG/M |
| 3300021181 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O | Environmental | Open in IMG/M |
| 3300021420 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M | Environmental | Open in IMG/M |
| 3300021559 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M | Environmental | Open in IMG/M |
| 3300022717 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300024178 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK35 | Environmental | Open in IMG/M |
| 3300024330 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300025509 | Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes) | Environmental | Open in IMG/M |
| 3300026315 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes) | Environmental | Open in IMG/M |
| 3300026322 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes) | Environmental | Open in IMG/M |
| 3300026324 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes) | Environmental | Open in IMG/M |
| 3300026328 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes) | Environmental | Open in IMG/M |
| 3300026376 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B | Environmental | Open in IMG/M |
| 3300026529 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes) | Environmental | Open in IMG/M |
| 3300026552 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes) | Environmental | Open in IMG/M |
| 3300026555 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300027460 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE17-C (SPAdes) | Environmental | Open in IMG/M |
| 3300027480 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027535 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027603 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027629 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027651 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027660 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027842 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027846 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027869 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027908 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027911 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes) | Environmental | Open in IMG/M |
| 3300027915 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes) | Environmental | Open in IMG/M |
| 3300028146 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK23 | Environmental | Open in IMG/M |
| 3300028536 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Host-Associated | Open in IMG/M |
| 3300031057 | Oak Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031122 | Oak Spring Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031231 | Coassembly Site 11 (all samples) - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031240 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG | Host-Associated | Open in IMG/M |
| 3300031572 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19 | Environmental | Open in IMG/M |
| 3300031715 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05 | Environmental | Open in IMG/M |
| 3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
| 3300031753 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515 | Environmental | Open in IMG/M |
| 3300031754 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 | Environmental | Open in IMG/M |
| 3300031965 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185 | Environmental | Open in IMG/M |
| 3300032076 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2) | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300032205 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 | Environmental | Open in IMG/M |
| 3300034165 | Sediment microbial communities from East River floodplain, Colorado, United States - 19_s17 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| AF_2010_repII_A001DRAFT_100962291 | 3300000793 | Forest Soil | MNEQAAWLTEFVNHHLGHLALALLAALHIQPKHPELPIPEHVVMAFVVVIIGTILALA |
| JGI12635J15846_102468411 | 3300001593 | Forest Soil | MAEHVTGLTQFVNHYLGQFALALLSWLHIKPENPEMPIPEHVVMGFLVLIVG |
| JGI12635J15846_106694262 | 3300001593 | Forest Soil | METHVSWLTQIVNQYLGHFALGLLGALHIQPSNPATPIPEHVVMSFVVFLIGVLGTLWLRPRL |
| JGIcombinedJ26739_1016168191 | 3300002245 | Forest Soil | MEHVSALTHLVNRFFGSFALSLLSALHVKPTDPENPIPEHVVMALAVLVVGT |
| JGIcombinedJ26739_1018603801 | 3300002245 | Forest Soil | MEQHVSWISQVVNHFLGGIALALLSALHIQPSHPEMPIPEHVCMGFF |
| JGI25617J43924_100356464 | 3300002914 | Grasslands Soil | MEHHVSGITHFVNHYLGQLAAALLAALRIQPSDPELPIPEHVVMACVVLV |
| JGI25617J43924_100517754 | 3300002914 | Grasslands Soil | MEHHVSGITHFVNHYLGHLAAALLAALRIQPSDPELPIPEHVVMACVVLVL |
| Ga0066388_1043388071 | 3300005332 | Tropical Forest Soil | MEEHVSWITHTLNHYLGSAAVALLNALHIQPEHPDLPIPEQVCMAFTVLVIA |
| Ga0070711_1003770981 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | MEQHVSSITQFVNHYLGGPVLALLSALHITPEHSDRPIPE |
| Ga0070694_1004759733 | 3300005444 | Corn, Switchgrass And Miscanthus Rhizosphere | MEEHVSWITHILNHYLGSAALALLNALHIQPEHPDLPIPEQVCMAFT |
| Ga0070708_1002903521 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | MEHHVSGLTNLVNKLLGKIALSLLTALHIHPKDPTAPIPEYVVMS |
| Ga0066686_109478281 | 3300005446 | Soil | MAEHVTGLTEFVNHYLGRFVLALLSALHISPENPNLPVPEHVV |
| Ga0070696_1015035071 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | MEEHVSWITHILNHYLGSAALALLNALHIQPEHPDLPIPEQ |
| Ga0070704_1005569893 | 3300005549 | Corn, Switchgrass And Miscanthus Rhizosphere | MEEHVSWITHILNHYLGSAALALLNALHIQPEHPDLPIPEQVCMAFTVLVIATILA |
| Ga0066692_104239853 | 3300005555 | Soil | MAEHVTGLTQFVNHYLGQFALALLSALHIKPTNPELPIPEH |
| Ga0066692_105699891 | 3300005555 | Soil | MVEHVTGLTELVNHYFGRFALALLSALHISPENPDLPIPEHVVMGFLVLIIG |
| Ga0066699_105668531 | 3300005561 | Soil | MEKHVSWITHILNHYLGSAALALLNALHIQPEHPKQPIPEHVAMGLVVL |
| Ga0066699_105878311 | 3300005561 | Soil | MTEHVTVLTQLVNHFLGRFAFALLSALHISPENPDLPIPEHVVMGFMV |
| Ga0066703_100619474 | 3300005568 | Soil | MHEQAAWLTEFVNHHLGHVALALLAVLHIQPSHPELPIPQRVVMA |
| Ga0066703_106186822 | 3300005568 | Soil | METHVSWLTQIVNQFLGNFALGLLSALHIQPSNPATPIPEHVVMSFVVFVIGVLGTL |
| Ga0066703_107970412 | 3300005568 | Soil | MPEHLTGLTQLVNHYLGQIALALLSSLHISPENPDLPIPE |
| Ga0070761_102162584 | 3300005591 | Soil | MEHHVSWLTHFLNQILGGPALALFKALHITPSYPDTPIPEHVVMALMV |
| Ga0070762_108885982 | 3300005602 | Soil | MEQHVSWISQVVNHYLGGIALALLSALHIQPRHPEMPIPE |
| Ga0070763_106560281 | 3300005610 | Soil | MEQHVSWLTQFVNHYLGGLALALLSALHIKPSHPELPIPEHVVMA |
| Ga0075299_10454091 | 3300005883 | Rice Paddy Soil | MEHHVSGLTHLVNHYLGSLALALLSALHIHPTDPQLPIPEHVVMALVV |
| Ga0075028_1009891742 | 3300006050 | Watersheds | MEHHVSGITQFVNHYLGQFALALLAMLHIHSSDPELPIPEHVVMACVVLV |
| Ga0075030_1000595755 | 3300006162 | Watersheds | MEEHVSWLTQFVNHYLGGAAFALLHALHIQPSHPDLPIPEHVVM |
| Ga0070716_1017694992 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | MGEHASWITEVVNRYLGGAAQALLSALHIQPENPNLPIPEHVVMGLSVLVLCT |
| Ga0070765_1002055651 | 3300006176 | Soil | MEQHVSWITQLVNHYLGGVALALLSALHIRPDHPDMPIPEHVAMGILVLI |
| Ga0066659_106907042 | 3300006797 | Soil | MEEHVSWITHILNHYLGSAALALLNALHIQPEHPKQPIPEHVAMGLVVLIVGTLL |
| Ga0099793_105517772 | 3300007258 | Vadose Zone Soil | METHVSWLTQIVNQVLGHFALGLLSVLHIQPSNPATPIPEHVVMSFVVFVIGVLGTLWLRPRLSVD |
| Ga0066709_1015337081 | 3300009137 | Grasslands Soil | MEEHVSWITHILNHYLGSAALALLNALHIQPEHPKQPIPEHVAMGLVVLIVGMLLA |
| Ga0126374_112609722 | 3300009792 | Tropical Forest Soil | MHEPVAWLTQFVNHHLGHLALALLAALHIQPSHPELPIPGHVVMAFVVVIIGTI |
| Ga0126376_129054642 | 3300010359 | Tropical Forest Soil | MVEHPTWLTQFVNHHFGHYAAALLAALHIQPSKLEEPI |
| Ga0134122_104338321 | 3300010400 | Terrestrial Soil | MEEHVSWITHILNHYLGSAALALLNALHIQPEHPDLPIPEQVCMA |
| Ga0134121_118567633 | 3300010401 | Terrestrial Soil | MGEHASWITEVVNRYLGGAAQALLSALHIQPENPNLPIPEH |
| Ga0137393_114088082 | 3300011271 | Vadose Zone Soil | MGEHASWITQFVNHYLGGAALAPLSALHIRPNNPELPIPEHVVMALLVLV |
| Ga0137388_113159883 | 3300012189 | Vadose Zone Soil | MENHVSGLTALVNHYLGHFALVLLSLLHIQPNNPEVPIPEHVVMALVV |
| Ga0137376_113132961 | 3300012208 | Vadose Zone Soil | METHVSWLTQIVNQVLGHFALGLLSVLRIQPSNPATPIPEHVVMSFVVFVIGVLGTLWL |
| Ga0137377_102650831 | 3300012211 | Vadose Zone Soil | MTEHVAWLTEFVNHHFGRFALALLSALHIKPTNPELPIQNTS* |
| Ga0137387_103657351 | 3300012349 | Vadose Zone Soil | METHVSWLTQLVNQYLGHFALGLLNALHIQPSNPTTAIPEHVVMSFVVFGIGVLGTL |
| Ga0137386_107875571 | 3300012351 | Vadose Zone Soil | MTEHVTWLTEFVNHHFGRFALALLSALHIKPTNPELPIPEHVIMAMVVLLVGTV |
| Ga0137390_103889401 | 3300012363 | Vadose Zone Soil | MGEHASWITQFVNHYLGGAALALLSALHIRPNNPELP |
| Ga0137396_105873211 | 3300012918 | Vadose Zone Soil | METHVSWLTQIVNQFLGNFALGLLSALHIQPSNPATPIPEHVVMSFVVFVIGVLG |
| Ga0137394_113349032 | 3300012922 | Vadose Zone Soil | METHVSWLTQIVNQVLGHFALGLLSALHIQPSNPATPIPEHVVMSFVVFVIGVLG |
| Ga0137359_100832401 | 3300012923 | Vadose Zone Soil | MGEQATWITRWVNEHFGGAALALLSALHIRPENPNLPIPEHVVMGLL |
| Ga0137413_100897791 | 3300012924 | Vadose Zone Soil | MEQHVSWITQIVNHVLGGPALALLHALHIQPDHPDLPIPEHVCMGLLVLIAGT |
| Ga0137419_115217202 | 3300012925 | Vadose Zone Soil | METHVSWLTQIVNQVLGHFALGLLSALHIQPSNPATPIPEHVVMS |
| Ga0134087_100955051 | 3300012977 | Grasslands Soil | MHEQAAWLTEFVNHHLGHVALALLAVLHIQPSHPELPIPQRVV |
| Ga0164304_104477031 | 3300012986 | Soil | MEHHVSELTQFVNQYLGQFALALFNLLHIKPTNPEMPI |
| Ga0181536_104907562 | 3300014638 | Bog | MEEHVSWITHFVNQYLGGAAAALLHALHIQPSHPDLPI |
| Ga0137414_10563092 | 3300015051 | Vadose Zone Soil | MDEQATWITRWVNEHFGGVPLALLSALHIRPENPNLPIPEHVVMGLLVLL |
| Ga0137414_11235251 | 3300015051 | Vadose Zone Soil | MGEQATWITRWVNEHFGGAALALLSALHIHPEKSQLAD |
| Ga0187821_102634643 | 3300017936 | Freshwater Sediment | MEQHVSWLTQFVNNYLGGIALALLSALHIKPSHPEMPIPEHVVMAL |
| Ga0187766_113473581 | 3300018058 | Tropical Peatland | MEHHVTELTQFVNHYLGSLALALLQLLHIKPSNPEL |
| Ga0066669_113872131 | 3300018482 | Grasslands Soil | MHEQAAWLTEFVNHHLGHVALALLAVLHIQPSHPEL |
| Ga0066669_118664631 | 3300018482 | Grasslands Soil | MEEHVSWITQFLNHYLGSAALALLNALHIQPEHADRPIPEHVCMACLVLAIAFFL |
| Ga0179592_104058031 | 3300020199 | Vadose Zone Soil | METHVSWLTRIVNQYLGHFALSLLSALHIQPSNPATPVPEHVVMSFVVFVIGVLGTLWLRPRLSVD |
| Ga0210399_110009672 | 3300020581 | Soil | MEQHVSWISQVVNHYLGGIALALLSALHIQPRHPEMPIPEH |
| Ga0210395_111044411 | 3300020582 | Soil | MEQHVSWLTQFVNHYLGALALLLLSALHIKPDHPEMPI |
| Ga0210405_102946871 | 3300021171 | Soil | MEQHVSWISQVVNHFLGGIARALLAALHIQPNHPNMPIP |
| Ga0210388_104745294 | 3300021181 | Soil | MEQHVSWISQVVNHFLGGIALALLSALHIQPRHPEMPIPE |
| Ga0210394_109232611 | 3300021420 | Soil | MEQHVSWISQVVNHYLGGIALALLSALHIQPRHPEMPIPEHVCMGFFVFVVG |
| Ga0210394_112194862 | 3300021420 | Soil | MEARVSWLTQFVNHYLGGVALALLQALHIHPSRPDLPIPESVVMCMVVFL |
| Ga0210409_103043934 | 3300021559 | Soil | METHVSWLTQIVNQYLGHFALGLLSALHIHPSNPATPIPEHVVM |
| Ga0242661_10740041 | 3300022717 | Soil | MEHHVSWLTQFVNHYLGGLALQLLAVLHIEPNNPEMPIPEHVVM |
| Ga0247694_10301301 | 3300024178 | Soil | MEHHVSDLTQFVNHYLGQFALVLFHLLHIKPTNPDMPIP |
| Ga0137417_12415861 | 3300024330 | Vadose Zone Soil | MTEHVTGLTRLVNHYLGQFALALLSWLHITPENPETPIPEHVVMAVVVLMWF |
| Ga0208848_11112291 | 3300025509 | Arctic Peat Soil | MEHVSWLTKLVNHYLGGFALSLDAALHITPSDHEYPIPEHVVMALAV |
| Ga0209686_10401204 | 3300026315 | Soil | MHEQAAWLTEFVNHHLGHVALALLAVLHIQPSHPELPIPQRVVMAVVAVII |
| Ga0209687_10344364 | 3300026322 | Soil | MPEHVTWLTQFVNHHLGHFALALLAALHIQPSNPELPIPDHVVM |
| Ga0209470_100345412 | 3300026324 | Soil | MHEQAAWLTEFVNHHLGHVALALLAALHIQPSHPELPIPQRVVMAVVVV |
| Ga0209802_10530374 | 3300026328 | Soil | MHEQAAWLTEFVNHHLGHVALALLAVLHIQPSHPELPIPQRV |
| Ga0257167_10768312 | 3300026376 | Soil | METHVSWLTQIVNQVLGHFALGLLSALHIQPSNPATPIPEHVVMSFVVFVIGVLGTLWLR |
| Ga0209806_12864362 | 3300026529 | Soil | MHEQAAWLTEFVNHHLGHVALALLAVLHIQPSHPELPIPQRVVMAVVVVIIGR |
| Ga0209577_103160574 | 3300026552 | Soil | MPEHVTWLTQFVNHHLGHFALALLAALHIQPSNPELPIPDHVVMAFV |
| Ga0179593_11419553 | 3300026555 | Vadose Zone Soil | MGERATWITRWVNEHFGGAALALLSALHIRPENPNLPIPETRP |
| Ga0207506_10034554 | 3300027460 | Soil | MEHHVSDLTQFVNHYLGQFALALFNLLHIKPTNPH |
| Ga0208993_10502233 | 3300027480 | Forest Soil | METHVSWLTQIVNQFLGNFALGLLSALHIQPSNPATP |
| Ga0209734_10243283 | 3300027535 | Forest Soil | METHVSWLTQIVNQYLGHFALGLLSALHIQPSNPATPIPEYVVMSF |
| Ga0209331_10489893 | 3300027603 | Forest Soil | MGEHASWITLLVNHYLGGAALALLSALHIRPTNPELPIP |
| Ga0209422_11416801 | 3300027629 | Forest Soil | MGEQATWITQFVNHYLGSAALALLSALHIRPNNPELPVPEHVVMGLLVLLLS |
| Ga0209217_11239853 | 3300027651 | Forest Soil | MESHISWLTQIVNQYLGHFALALLSALHIQPSNPATPIPEHVVMSFVV |
| Ga0209736_11359863 | 3300027660 | Forest Soil | METHVSWLTQIVNQYLGHFALGLLSALHIQPSNPATPIPEHVVMSFVVF |
| Ga0209580_103008551 | 3300027842 | Surface Soil | MGEQATWITQLVNHYLGGAALALLSALHIQPNNPELPIPEHVVM |
| Ga0209180_101006641 | 3300027846 | Vadose Zone Soil | MENHVSWLAQFVNQVLGRFALAVLSALHIKPNNPSAPIPEHVVMAACVLLLGTA |
| Ga0209579_104002393 | 3300027869 | Surface Soil | MEHHVSWLTHFVNQVLGAPALALLKALHITPSYPDTPIPEHVVMALTVLVVGT |
| Ga0209006_102834434 | 3300027908 | Forest Soil | MEEHVSWLTQFVNHYLGGVALALLHALHIQPSHPDFPIPEHVVMCMIV |
| Ga0209698_104319724 | 3300027911 | Watersheds | MEEHVSWLTQFVNHYLGGAAFALLHALHIQPSHPDLPIPEHVVMSMMVFVIGAL |
| Ga0209069_103089793 | 3300027915 | Watersheds | MGEQATWITQFVNHYLGGAALALLSALYIRPTNPELPI |
| Ga0247682_10029641 | 3300028146 | Soil | MEQHVSWLTQFVNHYLGSLALTLLSALHISPSHPETPIPEHVVMALMV |
| Ga0137415_109323933 | 3300028536 | Vadose Zone Soil | MAEHVTGLTEFVNHYLGRFALALLSALHIRPENPDMP |
| Ga0265338_109130292 | 3300028800 | Rhizosphere | MEEHVSWITQFVNHHLGGAVLALLSALHIHSAHPDMPIPEFDVMCGIVF |
| Ga0170834_1087853661 | 3300031057 | Forest Soil | MEQHVSWLTQFVNHYLGPVALALLSVLHIKPNHPELPIPEHVVMALTV |
| Ga0170822_161490031 | 3300031122 | Forest Soil | MEEHVSWLTHFVNHYLGGVALALLYALHIRPSHPDLPIPEHVVMCMMV |
| Ga0170824_1121251781 | 3300031231 | Forest Soil | MGEHASWITEVVNRYLGGAALALLSALHIKPENPSLPIPEHVV |
| Ga0170824_1281053041 | 3300031231 | Forest Soil | MEEHVSWLTHFVNHYLGGAAFALLHALHIQPTHPDLPIPEH |
| Ga0265320_1000037741 | 3300031240 | Rhizosphere | MEEHVSWLTTFVNHYLGGVAAALLQALHVQPSHPALPIPEYV |
| Ga0318515_105790242 | 3300031572 | Soil | MHEPVAWLTQFVNHHLGHLALALLASLHIQPSHPEQPI |
| Ga0307476_102462771 | 3300031715 | Hardwood Forest Soil | MEQHVSWITQIVNHVLGGAAIALLNALHIQPDHPDLPIPEHVCMGILVLIV |
| Ga0307476_103006341 | 3300031715 | Hardwood Forest Soil | MEQNVSWITQIVNHVLGGAALALLHALHIQPDHPELPIPE |
| Ga0307476_110486602 | 3300031715 | Hardwood Forest Soil | MEQHVSWISQVVNHFLGGIALALLSALHIQPSHPE |
| Ga0307469_100970884 | 3300031720 | Hardwood Forest Soil | MEEHVSWITHILNQFFGSATLALLNALNIQPDSRQLPIPERVAMGLVILVIGTLLALWLR |
| Ga0307469_114059581 | 3300031720 | Hardwood Forest Soil | MEHHVSWLTQLVNHYLGGLALSFLQALHIKPADPATPIPEVVVMQLVVFLIGVVGTLWLRSRLSVGSP |
| Ga0307477_107752161 | 3300031753 | Hardwood Forest Soil | MQEHAKWLTLFVNQHLGSAAIALLHALHIQPSHPDLPIPEHLVMSLVVFVIAALG |
| Ga0307475_112706822 | 3300031754 | Hardwood Forest Soil | MQEHAKWLTIFVNQHLGNVAIALLHALHIQPSHPDLPIPEYVVMSLVVFLI |
| Ga0326597_122285541 | 3300031965 | Soil | MEEHVSWLTHLVNHYLGGAALALLGALGIQPTHPDLPIPEHVVMSMVVVV |
| Ga0306924_113227171 | 3300032076 | Soil | MNEHAAWLTQFVNHHLGHLALALLAALHIQPNHPERPIPEHVVMA |
| Ga0307471_1030678731 | 3300032180 | Hardwood Forest Soil | MVEHVTRLTEFVNHYLGPFALALLSALHVTPENPDLPIPEHVVMAFV |
| Ga0307472_1007266443 | 3300032205 | Hardwood Forest Soil | MEHHVSGITHFVNHYLGPFALSLLSMLHIQPTDPELPIP |
| Ga0364942_0318999_367_507 | 3300034165 | Sediment | MEQHVSWLTHFVNHYLGPYALALLSVLHIRPNHPETPIPEHVVMSLV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |