NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F086029

Metagenome / Metatranscriptome Family F086029

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F086029
Family Type Metagenome / Metatranscriptome
Number of Sequences 111
Average Sequence Length 41 residues
Representative Sequence MAHVCRAETAAMPGWYGIAAAFDDVQFDRDDRIPSRFLKP
Number of Associated Samples 91
Number of Associated Scaffolds 111

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 97.30 %
% of genes from short scaffolds (< 2000 bps) 84.68 %
Associated GOLD sequencing projects 88
AlphaFold2 3D model prediction Yes
3D model pTM-score0.21

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(31.532 % of family members)
Environment Ontology (ENVO) Unclassified
(32.432 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(51.351 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52
1JGIcombinedJ26739_1010505151
2JGI25382J37095_100328141
3Ga0058882_17232921
4Ga0066690_109564592
5Ga0066701_103874072
6Ga0066695_106120772
7Ga0066670_100381451
8Ga0070762_104601181
9Ga0080026_102688701
10Ga0075028_1004756832
11Ga0075014_1003500031
12Ga0066665_115121581
13Ga0073928_1000750213
14Ga0066710_1001496396
15Ga0099829_104139573
16Ga0099829_111394821
17Ga0099827_104608213
18Ga0116127_10508151
19Ga0134062_103420462
20Ga0074044_101349311
21Ga0126370_122690361
22Ga0126372_127129232
23Ga0134122_100099137
24Ga0150983_105636461
25Ga0137392_113176042
26Ga0153990_10670761
27Ga0137388_106672452
28Ga0137382_107428981
29Ga0137399_104960222
30Ga0137399_111279631
31Ga0137399_116986951
32Ga0137362_106857741
33Ga0137362_116168001
34Ga0137381_100520581
35Ga0137381_106182212
36Ga0137376_104937122
37Ga0137379_102600191
38Ga0137377_112797992
39Ga0137386_102800741
40Ga0137360_100225511
41Ga0137360_113719842
42Ga0137395_106389551
43Ga0137416_116868802
44Ga0137416_116994291
45Ga0137416_118359682
46Ga0137416_121953762
47Ga0137404_104785211
48Ga0137407_120194931
49Ga0164303_112125422
50Ga0157372_120428952
51Ga0134081_100260061
52Ga0134078_100726831
53Ga0137420_13187561
54Ga0137420_13660321
55Ga0137420_14614602
56Ga0137403_107693772
57Ga0134085_104744841
58Ga0182036_108469302
59Ga0187806_10331353
60Ga0187816_100357493
61Ga0187772_104582472
62Ga0193726_12968811
63Ga0179592_100208251
64Ga0210407_113339901
65Ga0210407_114833272
66Ga0210403_113382521
67Ga0210401_100431411
68Ga0210406_106703771
69Ga0210400_109198212
70Ga0210400_113502712
71Ga0210405_111114642
72Ga0210408_104857231
73Ga0210408_105980932
74Ga0210388_102291711
75Ga0210388_109074451
76Ga0210385_104906671
77Ga0210383_114709251
78Ga0210383_115747431
79Ga0210384_116397302
80Ga0210392_112827831
81Ga0210402_1001549410
82Ga0210402_116830031
83Ga0210409_100449413
84Ga0210409_106677842
85Ga0126371_135305011
86Ga0212123_109406121
87Ga0208935_10157152
88Ga0207699_105231732
89Ga0209802_11200191
90Ga0209804_10887923
91Ga0179587_100270071
92Ga0209179_11280862
93Ga0209118_10447173
94Ga0209773_101560723
95Ga0209701_107067501
96Ga0209283_108870861
97Ga0209380_103914722
98Ga0209069_105246772
99Ga0308309_102426393
100Ga0308309_115647112
101Ga0222749_104219482
102Ga0222749_106808182
103Ga0310686_1010646001
104Ga0307474_108318041
105Ga0307469_110734471
106Ga0318517_102376972
107Ga0306919_105657581
108Ga0307479_117400601
109Ga0306922_101623961
110Ga0307471_1012215592
111Ga0370484_0227677_14_145
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 4.41%    β-sheet: 16.18%    Coil/Unstructured: 79.41%
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510152025303540MAHVCRAETAAMPGWYGIAAAFDDVQFDRDDRIPSRFLKPSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.21
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
100.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Bog Forest Soil
Peatland
Freshwater Sediment
Iron-Sulfur Acid Spring
Watersheds
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Grasslands Soil
Soil
Grasslands Soil
Soil
Soil
Hardwood Forest Soil
Untreated Peat Soil
Tropical Peatland
Bog Forest Soil
Permafrost Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Attine Ant Fungus Gardens
31.5%3.6%6.3%21.6%3.6%3.6%3.6%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ26739_10105051513300002245Forest SoilMAHVRRAETAAMPGWYGIAAAFDDVQFDRDDRLPSRFLKP*
JGI25382J37095_1003281413300002562Grasslands SoilTIATVRRIELAATPGWFGVAASFDDMEFGRDDMIPSRFLDE*
Ga0058882_172329213300004121Forest SoilVSTARVQRIEPAAMPGWYGVAASFDDVQFDRDDGVPSRFLRP*
Ga0066690_1095645923300005177SoilKAHVQRYEPASMRGWYGVAASFDDVQFDRDDRIPTRFLKP*
Ga0066701_1038740723300005552SoilRVCRVEVAAMPGWYGIAAFFEDVQFDRDDGVPSRFLKP*
Ga0066695_1061207723300005553SoilRTETAAMPGWHGIAAIFDDVQFDRDDRIPSRYLKS*
Ga0066670_1003814513300005560SoilMGMGSVVMTTLARVCRIEAAAMPGWHGLAACFDDVQFDHDDDMPSRFLKP*
Ga0070762_1046011813300005602SoilIVTTARVQRIEPAAMPGWYGVAASFDDVQFDRDDGVPSRFLRP*
Ga0080026_1026887013300005952Permafrost SoilAHVRRSDPAAMPGWYGIAATFDDVQFDRDDCVPTRFLSV*
Ga0075028_10047568323300006050WatershedsGNVVMATMAHVCRTEPAAMPGWYGIAAAFDDVQFDRDDHMPSRFLKP*
Ga0075014_10035000313300006174WatershedsLGNVVVATMAHVCRTESAAMPGWYGVAAAFDDVQFDRDDHMPSRFLKP*
Ga0066665_1151215813300006796SoilNVVVATMAHVCRAETAAMPGWYGIAAAFDDVQFDRDDRIPSRFLKP*
Ga0073928_10007502133300006893Iron-Sulfur Acid SpringVRRLEPAATPGWYGVAVLFDDMSFDRDDRVPSRFLSL*
Ga0066710_10014963963300009012Grasslands SoilCRAEAAAMPGWYGIAAAFDDVQFDRDDRIPSRFLKP
Ga0099829_1041395733300009038Vadose Zone SoilAETAAMPGWYGIAAAFDDVQFDRDDRIPSRFLVVS*
Ga0099829_1113948213300009038Vadose Zone SoilNVVAATMSRVCRTEPAAVAGWHGIAAAFDDVQFDRDDRIPSRYLKP*
Ga0099827_1046082133300009090Vadose Zone SoilVCRIEVAAMPGWYGIAAFFEDVQFDRDDGVPSRFLKP*
Ga0116127_105081513300009618PeatlandVEAAATPGWHGIAASFDDVEFDRDDLVPSRFLNW*
Ga0134062_1034204623300010337Grasslands SoilGRGSVLMTTMAHVCRTEAAAMPGWYGFAACFDDVEFDHDDDLPSRFLRP*
Ga0074044_1013493113300010343Bog Forest SoilMGHGSVVIVTTARVQRCGPAATPGWYGIAASYDDVQFDRDDGLPSHFQRP*
Ga0126370_1226903613300010358Tropical Forest SoilTLAHVCRTEAAAMPGWYGLAACFDDVQFDHDDDLPSRFLKR*
Ga0126372_1271292323300010360Tropical Forest SoilRRIEPAAMPGWYGIAVAFTDVQFDRDDGIPARFL*
Ga0134122_1000991373300010400Terrestrial SoilARVQRIETAAMPGWYGVAATFDELAFDRDDRVPSRFLKP*
Ga0150983_1056364613300011120Forest SoilGNVVVATMAHVRRAETAAMPGWYGIAAAFDDVQFDRDDHIPSRFLKP*
Ga0137392_1131760423300011269Vadose Zone SoilTMAHVCRAEAAAMPGWYGIAAAFDDVQFDRDDRIPSRFLKP*
Ga0153990_106707613300012169Attine Ant Fungus GardensTEPAATPGWYGIAASFDDVQFDRDDRVPARFLNP*
Ga0137388_1066724523300012189Vadose Zone SoilHVRRVEPAAMPNWYGIAASFDDVQFDRDDGIPIRFL*
Ga0137382_1074289813300012200Vadose Zone SoilMAHVCRAETAAMPGWYGIAAAFDDVQFDRDDRIPSRFLKP*
Ga0137399_1049602223300012203Vadose Zone SoilCRAETAAMPGWYGIAAAFDDVQFDRDDRVPSRFLKP*
Ga0137399_1112796313300012203Vadose Zone SoilVVAATMARVCRTEAAAVPGWHGIAAAFDEVQFDRDDCIPSRYLKP*
Ga0137399_1169869513300012203Vadose Zone SoilHEPASMPGWYGIAASFDDVQFDRDDRVPSRFLNP*
Ga0137362_1068577413300012205Vadose Zone SoilRAEPAATPNWYGIAASFDDMEFDRDDGVPSRFLGS*
Ga0137362_1161680013300012205Vadose Zone SoilAEAAAMPGWYGIAAAFDDVQFDRDDRIPSRFLKP*
Ga0137381_1005205813300012207Vadose Zone SoilRTEAAAMRGWYGLAASFDDVQFDHDDDVPSRFLKP*
Ga0137381_1061822123300012207Vadose Zone SoilRIEVAAMPGWYGIAAFFEDVQFDRDDGVPSRFMKP*
Ga0137376_1049371223300012208Vadose Zone SoilGNVVVATMAHVCRAETAAMPGWYGIAAAFDDVQFDRDDRIPSRFLKP*
Ga0137379_1026001913300012209Vadose Zone SoilTMARVCRVEVAAMPGWYGIAAFFEDVQFDRDDGVPSRFLKP*
Ga0137377_1127979923300012211Vadose Zone SoilVCRIEAAAMPSWFGIAATFDDVQFDRDDGIPSRFLKP*
Ga0137386_1028007413300012351Vadose Zone SoilTMARVCRIEVAAMPGWYGIAAFFEDVQFDRDDGVPSRFMKP*
Ga0137360_1002255113300012361Vadose Zone SoilVMMTMAHVQRAEPAATPNWYGIAASFDDMEFDRDDGVPSRFLGS*
Ga0137360_1137198423300012361Vadose Zone SoilATTARVRRLEPAAMPGWYGVAALFDDMSFDRDDRVPSRFLGL*
Ga0137395_1063895513300012917Vadose Zone SoilNVVMATMANVVRAEAAAMPGWHGIAAAFDDVQFDRDDRIPSRFLKP*
Ga0137416_1168688023300012927Vadose Zone SoilCRAEAAAMPGWYGIAAAFDDVQFDRDDHIPSRFLKP*
Ga0137416_1169942913300012927Vadose Zone SoilGNVVLVSMARVRRTEPSAVPGWFGVAAAFEDVQFDRDDGLPSRFQKL*
Ga0137416_1183596823300012927Vadose Zone SoilATMAHVCRAETAAMPGWYGIAAAFDDVQFDRDDRIPSRFLKP*
Ga0137416_1219537623300012927Vadose Zone SoilHVCRAETAAMPGWYGIATSFDDVQFDRDDRLPSRFLKP*
Ga0137404_1047852113300012929Vadose Zone SoilNVVVATMAHVCRREPAATPGWFGIAAAFDDVQFDRDDRIPSRYLKP*
Ga0137407_1201949313300012930Vadose Zone SoilRTESAAMPGWFGVAAAFDDVEFDRDDGLPCRFQKP*
Ga0164303_1121254223300012957SoilVGRTELAAVPGWFGAAAAFDDVQFDRDDGLPSRFQKP*
Ga0157372_1204289523300013307Corn RhizosphereRIETAAMPGWYGVAATFDELAFDRDDRVPSRFLKP*
Ga0134081_1002600613300014150Grasslands SoilNVVVATMARVCRTETVAMPGWHGIAAAFDDVQFDRDDCIPSRYLKP*
Ga0134078_1007268313300014157Grasslands SoilGNVVAVTMARVRRTETAAMPGWHGIAAIFDDVQFDRDDRIPSRYLKS*
Ga0137420_131875613300015054Vadose Zone SoilGLGNVVVATMAHVRRAETAAVPGWFGIAAAFDDVQFDRDDRIPSRFLKP*
Ga0137420_136603213300015054Vadose Zone SoilMATMAHVCRAETAAMPGWHGIAAAFKEVLQFDRDDRIPSRFLKP*
Ga0137420_146146023300015054Vadose Zone SoilMAHVCRIETAAMPGWHGIAAAFDDVQFDRDDRVPSRYLKP*
Ga0137403_1076937723300015264Vadose Zone SoilATMAHVCRAETAAMPGWHGIAAAFKEVQFDRDDRIPSRFLKP*
Ga0134085_1047448413300015359Grasslands SoilTVRRIEPAATPGWFGVAASFDDMEFGRDDVIPSRFLDA*
Ga0182036_1084693023300016270SoilMGRGSVVMTTMAHVCRAEAAATPGWYELAACFDDVQFDHDDDLPSRFLKP
Ga0187806_103313533300017928Freshwater SedimentMVTLAQVCRTEKADMPGWFGVAASFNDVQFDRDDSIPSRYLKP
Ga0187816_1003574933300017995Freshwater SedimentLAQVCRVEKADMPGWFGVAASFNDVQFDRDDSIPSRYLKP
Ga0187772_1045824723300018085Tropical PeatlandVCRIEAANMPGWYGIAAKFEDFGFDRDDRIPEPITVD
Ga0193726_129688113300020021SoilRVERAAMPGWYGVAASFDDVEFDRDDSVPTRFECF
Ga0179592_1002082513300020199Vadose Zone SoilTTMARVCRTETAAMPGWHGIAAAFDDVQFDRDDRIPSRYLKP
Ga0210407_1133399013300020579SoilSTARVQRIEPAAMPGWYGVAASFDDVQFDRDDGVPSRFLRP
Ga0210407_1148332723300020579SoilRAEAAAMPGWYGIAAAFDDVQFDRDDRIPSRFLKP
Ga0210403_1133825213300020580SoilHVQRYEPASMPGWYGIAAAFDDVQFDRDDRVPTRFLKP
Ga0210401_1004314113300020583SoilKAHVQRYEPASMPGWYGIAAAFDDVQFDRDDRVPTRFLKP
Ga0210406_1067037713300021168SoilARVQRIEPAAMPGWYGVAASFDDVQFDRDDGVPSRFLRP
Ga0210400_1091982123300021170SoilSRAHVQRCETAAMPGWYGIATSFDDVQFDRDDRVPARFLKP
Ga0210400_1135027123300021170SoilNVVLATRAHVQRCDPAATPGWHGIAALFDDVQFDRDDRVPTRFLKP
Ga0210405_1111146423300021171SoilTRAHVQRSDPAATPGWHGIAASFDDVQFDRDDRVPSRFLKP
Ga0210408_1048572313300021178SoilARVQRLEPAAVPRWYGVAALFDDMCFDRDDRVPSRFLNL
Ga0210408_1059809323300021178SoilLATRAHVQRCDPAATPGWHGIAALFDDVQFDRDDRVPTRFLKP
Ga0210388_1022917113300021181SoilTARVQRIEPAAMPGWYGVAAAFDDVKFDRDDGVPSRFLRP
Ga0210388_1090744513300021181SoilRVQRIEAAAMPGWYGVAAAFDDVHFDRDDGLPSRFQRP
Ga0210385_1049066713300021402SoilQRLEPAAMPGWYGVAALFDDMSFDRDDRVPARFLKL
Ga0210383_1147092513300021407SoilRVRRLEPAAMPGWYGVAALFDDMSFDRDDRVPARFLKL
Ga0210383_1157474313300021407SoilVVATTACVRRLEPAAMPGWYGVAALFDDMSFDRDDRVPARFLKL
Ga0210384_1163973023300021432SoilMVTKAHVSRMEAAAMPGWYGVAAAFDDVEFDRDDGLPTRFLKR
Ga0210392_1128278313300021475SoilVKRLEPAATPGWYGVAALFEDVAFDRDDRVPTRFME
Ga0210402_10015494103300021478SoilVRRIEPAAMPGWYGVAASFDDVQFDRDDRVPSRFLQP
Ga0210402_1168300313300021478SoilVVIVSSARVQRIEPAAMPGWYGVAAAFDDVHFDRDDGLPSRFLRP
Ga0210409_1004494133300021559SoilVERAEPAAMPNWYGIAASFVDMQFDRDDVLPSRFLSS
Ga0210409_1066778423300021559SoilHVRRIHPAAVPGWYGIAANFDDVSFDRDDFIPSRFLGT
Ga0126371_1353050113300021560Tropical Forest SoilSVLMTTMAHVCRTEAAAMPGWYGLAACFDDVQFDHDDGMPSRFLKP
Ga0212123_1094061213300022557Iron-Sulfur Acid SpringQRLEPAAMPGWYGVAASFDDLKFDRDDGVPSRFPEL
Ga0208935_101571523300025414PeatlandRVQRLEPAAMPRWYGVAALFDDMSFDRDDRVPSRFLSL
Ga0207699_1052317323300025906Corn, Switchgrass And Miscanthus RhizosphereAARVKRLEPAATPGWYGIAALFEDVAFDRDDHIPTRFMK
Ga0209802_112001913300026328SoilNVVMATMAHVCRTEAAAMPSWYGVAASFDDVAFDRDDRVPARFLKP
Ga0209804_108879233300026335SoilCRAETAATPGWYGIAAAFDDVQFDRDDRIPSRYLKP
Ga0179587_1002700713300026557Vadose Zone SoilLGLGNVVATTMARVCRTETAAMPGWHGIAAAFDDVQFDRDDRIPSRYLKP
Ga0209179_112808623300027512Vadose Zone SoilARVCRTELAAMPGWFGVAAAFDDVQFDRDDSIPSRYLKP
Ga0209118_104471733300027674Forest SoilVATMAHVRRAETAAMPGWYGIAAAFDDVQFDRDDRIPSRFLKP
Ga0209773_1015607233300027829Bog Forest SoilHGSVVIVSTARVQRIEPAAMPGWYGVAAAFDDVKFDRDDGLPSRFLRP
Ga0209701_1070675013300027862Vadose Zone SoilQRYEPAAMQGWYGIAATFDDVQFDRDDRVPSRYLKP
Ga0209283_1088708613300027875Vadose Zone SoilRCDPAATPGWHGIAASFDDVQFDRDDRVPSRFLKP
Ga0209380_1039147223300027889SoilVVVATTARVRRLEPAATPGWFGVAVLFDDMSFDRDDRVPSRFLSL
Ga0209069_1052467723300027915WatershedsQRVDPAAMPGWYGIAASYDDVQFDRDDSIPSRFLK
Ga0308309_1024263933300028906SoilTAARVKRLEPAATPGWYGVAALFEDVAFDRDDRVPSRFME
Ga0308309_1156471123300028906SoilKRLEPAATPGWYGVAALFEDVVFDRDDRVPVRYTK
Ga0222749_1042194823300029636SoilATMARVQRLEPAAMPGWFGVAASFDEVQFDRDDHVPARFLNP
Ga0222749_1068081823300029636SoilVMATMAHVCRTEPAAMPGWHGIAAAFDDVQFDRDDHIPSRYLKP
Ga0310686_10106460013300031708SoilKAHVRRMEAAAMPGWYGVAAAFDDVQFDRDDGLPTRFLKR
Ga0307474_1083180413300031718Hardwood Forest SoilIVTKARAERVEPAAMPGWHGVAASFDDVQFDRDDGLPSRFQRP
Ga0307469_1107344713300031720Hardwood Forest SoilVRRVEPAAMPGWFGVAAAFDDVEFDRDDGLPFRFQNY
Ga0318517_1023769723300031835SoilGRGSVVMTTMAHVCRSEAAATPGWYGLAALFDDVQFDHDDDLPSRFRKP
Ga0306919_1056575813300031879SoilAHVCRAEAAATPGWYELAACFDDVQFDHDDDLPSRFLKP
Ga0307479_1174006013300031962Hardwood Forest SoilVVVATMAHVCRADAAAMPGWYGIAAVFDDVQFDRDDRMPSRFLNA
Ga0306922_1016239613300032001SoilSVVMTTMAHVCRAEAAATPGWYELAACFDDVQFDHDDDLPSRFLKP
Ga0307471_10122155923300032180Hardwood Forest SoilVVMVTRARVRRIEPAAMPGWFGIAAAFDDVEFDRDDGLPSRFQKP
Ga0370484_0227677_14_1453300034125Untreated Peat SoilMVSLARVRRVQPAATPGWFGIAASFDDVQFDRDDCVPSRFHDV


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