Metagenome / Metatranscriptome Family F086023

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086023
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	77 residues
Representative Sequence	MSSPRPGLIPGIRPKRKMEEPVTPLSVLGPQCEAQRERIRKLFESGASAQETLRQLCELADETIRKIFGELQ
Number of Associated Samples	101
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.59 %
% of genes near scaffold ends (potentially truncated)	98.20 %
% of genes from short scaffolds (< 2000 bps)	90.99 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.586 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (31.532 % of family members)
Environment Ontology (ENVO)	Unclassified (23.423 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.054 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.00% β-sheet: 0.00% Coil/Unstructured: 57.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF00543	P-II	78.38
PF00909	Ammonium_transp	20.72
PF13537	GATase_7	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0347	Nitrogen regulatory protein PII	Signal transduction mechanisms [T]	78.38
COG0004	Ammonia channel protein AmtB	Inorganic ion transport and metabolism [P]	20.72

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.59 %
Unclassified	root	N/A	14.41 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.59 %
Unclassified	root	N/A	14.41 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.59 %
Unclassified	root	N/A	14.41 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	34.23 %
Unclassified	root	N/A	14.41 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	31.53 %
Unclassified	root	N/A	14.41 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	31.53 %
Unclassified	root	N/A	14.41 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	31.53 %
Unclassified	root	N/A	14.41 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.41 %
Silvibacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium	3.60 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	1.80 %
Acidipila	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila	0.90 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.41 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	3.60 %
unclassified Acidobacterium	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium	0.90 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	0.90 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	0.90 %
Acidipila rosea	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	0.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.41 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	3.60 %
Acidobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	0.90 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	0.90 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	0.90 %
Acidipila rosea	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	0.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001545\|JGI12630J15595_10114815	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300001661\|JGI12053J15887_10530755	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300001867\|JGI12627J18819_10179411	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300001867\|JGI12627J18819_10407769	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300002886\|JGI25612J43240_1022814	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	924	Open in IMG/M
3300004152\|Ga0062386_101397814	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300004631\|Ga0058899_11392545	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	773	Open in IMG/M
3300006052\|Ga0075029_100246038	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1128	Open in IMG/M
3300006059\|Ga0075017_100649560	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	809	Open in IMG/M
3300006162\|Ga0075030_100734161	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	781	Open in IMG/M
3300006174\|Ga0075014_100674211	Not Available	599	Open in IMG/M
3300006176\|Ga0070765_101305401	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	684	Open in IMG/M
3300006755\|Ga0079222_11811700	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300009521\|Ga0116222_1316344	Not Available	675	Open in IMG/M
3300009621\|Ga0116116_1048367	All Organisms → cellular organisms → Bacteria	1296	Open in IMG/M
3300009645\|Ga0116106_1244253	Not Available	571	Open in IMG/M
3300009700\|Ga0116217_10146042	All Organisms → cellular organisms → Bacteria	1583	Open in IMG/M
3300010046\|Ga0126384_10949005	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300010339\|Ga0074046_10441623	Not Available	782	Open in IMG/M
3300012202\|Ga0137363_10778095	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	811	Open in IMG/M
3300012205\|Ga0137362_11297151	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300012925\|Ga0137419_11209425	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300014153\|Ga0181527_1380919	Not Available	542	Open in IMG/M
3300014164\|Ga0181532_10073236	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2190	Open in IMG/M
3300016270\|Ga0182036_10183621	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	1519	Open in IMG/M
3300016357\|Ga0182032_10440353	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1062	Open in IMG/M
3300016404\|Ga0182037_11787542	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300016422\|Ga0182039_10795089	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300017822\|Ga0187802_10269649	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300017928\|Ga0187806_1157843	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300017932\|Ga0187814_10061382	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1381	Open in IMG/M
3300017933\|Ga0187801_10021788	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	2188	Open in IMG/M
3300017937\|Ga0187809_10016238	All Organisms → cellular organisms → Bacteria	2404	Open in IMG/M
3300017943\|Ga0187819_10262009	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1010	Open in IMG/M
3300017944\|Ga0187786_10114841	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	927	Open in IMG/M
3300017961\|Ga0187778_10873924	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300017972\|Ga0187781_11389128	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300017973\|Ga0187780_10397500	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	977	Open in IMG/M
3300017999\|Ga0187767_10052402	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1015	Open in IMG/M
3300018007\|Ga0187805_10491989	Not Available	574	Open in IMG/M
3300018012\|Ga0187810_10045474	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1646	Open in IMG/M
3300018062\|Ga0187784_11371613	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300018086\|Ga0187769_11058117	Not Available	614	Open in IMG/M
3300020580\|Ga0210403_11338497	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300020583\|Ga0210401_11461937	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300021088\|Ga0210404_10571497	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300021178\|Ga0210408_10976306	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300021180\|Ga0210396_10134850	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	2223	Open in IMG/M
3300021180\|Ga0210396_11692606	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300021181\|Ga0210388_11630357	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300021181\|Ga0210388_11735208	Not Available	516	Open in IMG/M
3300021401\|Ga0210393_10752428	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	794	Open in IMG/M
3300021420\|Ga0210394_11114733	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300021432\|Ga0210384_10264415	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1548	Open in IMG/M
3300021432\|Ga0210384_11648318	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300021433\|Ga0210391_10490185	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	965	Open in IMG/M
3300021444\|Ga0213878_10386188	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300021478\|Ga0210402_11181133	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300022510\|Ga0242652_1020181	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300022712\|Ga0242653_1036435	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	757	Open in IMG/M
3300022717\|Ga0242661_1024058	All Organisms → cellular organisms → Bacteria	1006	Open in IMG/M
3300022726\|Ga0242654_10218365	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	670	Open in IMG/M
3300022726\|Ga0242654_10367576	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300024178\|Ga0247694_1029748	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300025500\|Ga0208686_1112199	Not Available	571	Open in IMG/M
3300026514\|Ga0257168_1099888	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300026551\|Ga0209648_10473856	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	753	Open in IMG/M
3300026890\|Ga0207781_1031882	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300027073\|Ga0208366_1027861	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300027371\|Ga0209418_1086953	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300027381\|Ga0208983_1069927	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300027502\|Ga0209622_1061170	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300027625\|Ga0208044_1174284	Not Available	586	Open in IMG/M
3300027629\|Ga0209422_1091633	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300027703\|Ga0207862_1186433	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300027738\|Ga0208989_10252225	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300027875\|Ga0209283_10773218	All Organisms → cellular organisms → Bacteria → Acidobacteria	593	Open in IMG/M
3300027911\|Ga0209698_10400035	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → Acidipila rosea	1073	Open in IMG/M
3300029636\|Ga0222749_10826157	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300031231\|Ga0170824_117407218	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	969	Open in IMG/M
3300031543\|Ga0318516_10546945	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300031544\|Ga0318534_10632713	Not Available	607	Open in IMG/M
3300031747\|Ga0318502_10556855	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300031768\|Ga0318509_10823375	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300031792\|Ga0318529_10481842	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300031819\|Ga0318568_10183465	All Organisms → cellular organisms → Bacteria	1288	Open in IMG/M
3300031820\|Ga0307473_11139636	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300031879\|Ga0306919_11311809	Not Available	548	Open in IMG/M
3300031897\|Ga0318520_10668350	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300031945\|Ga0310913_10812136	Not Available	659	Open in IMG/M
3300031945\|Ga0310913_11092284	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300032010\|Ga0318569_10321829	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300032044\|Ga0318558_10663727	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300032066\|Ga0318514_10223719	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	988	Open in IMG/M
3300032076\|Ga0306924_10263587	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1979	Open in IMG/M
3300032160\|Ga0311301_11994652	Not Available	678	Open in IMG/M
3300032180\|Ga0307471_102467343	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300032261\|Ga0306920_103656914	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300032828\|Ga0335080_10203725	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2175	Open in IMG/M
3300032892\|Ga0335081_10285832	All Organisms → cellular organisms → Bacteria	2196	Open in IMG/M
3300033289\|Ga0310914_11356625	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300033402\|Ga0326728_10031359	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8943	Open in IMG/M
3300033402\|Ga0326728_10673196	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	784	Open in IMG/M
3300033405\|Ga0326727_10470511	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1110	Open in IMG/M
3300033405\|Ga0326727_11065258	Not Available	580	Open in IMG/M
3300033561\|Ga0371490_1035558	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1562	Open in IMG/M
3300033806\|Ga0314865_139555	Not Available	644	Open in IMG/M
3300033982\|Ga0371487_0056830	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2242	Open in IMG/M
3300034091\|Ga0326724_0047380	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3170	Open in IMG/M
3300034091\|Ga0326724_0055217	All Organisms → cellular organisms → Bacteria	2849	Open in IMG/M
3300034091\|Ga0326724_0290571	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	914	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.88%
Aquatic	Environmental → Aquatic	17.12%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.77%
Freshwater	Environmental → Aquatic → Freshwater	12.61%
Peat	Environmental → Terrestrial → Peat	8.11%
Sediment	Environmental → Aquatic → Sediment	4.50%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.25%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	12.61%
Loam	Environmental → Terrestrial → Soil → Loam	12.61%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	8.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.50%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	40.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.61%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.01%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	8.11%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	7.21%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.70%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.70%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.53%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.91%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	8.11%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	7.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.31%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.31%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.50%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.60%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.60%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.70%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.80%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.80%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.90%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.90%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.90%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009621	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_150	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022510	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022712	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024178	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK35	Environmental	Open in IMG/M
3300025500	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40 (SPAdes)	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026890	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 51 (SPAdes)	Environmental	Open in IMG/M
3300027073	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF010 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027381	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033561	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB28FN SIP fraction	Environmental	Open in IMG/M
3300033806	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_20	Environmental	Open in IMG/M
3300033982	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fraction	Environmental	Open in IMG/M
3300034091	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12630J15595_101148152	3300001545	Forest Soil	MSSPRPGLVPSFRAKSITMEEPQVTPLSELGPQCEAQRERIRKLFESGAGARETLRQLCELADGTIKKVFGGLLRVRSAPAQGMSLLAL
JGI12053J15887_105307552	3300001661	Forest Soil	MSTPRPGLAGFRLIAKMEEPAISLPEFAAQCEAQRERIRKLFEAGATAQDTLRELCELADGAIRKVFGELLRAHGGPSQGLALLAL
JGI12627J18819_101794111	3300001867	Forest Soil	MSSLRTGLVPRFRPKSKMMDEQPVTPLSELAPQCEAQRERIRRLFENGAGARETLRQLCELADGTIKKVFGE
JGI12627J18819_104077692	3300001867	Forest Soil	MRNAAKALCKDPMSFARPGLIPSFRPKSKPMDEPQVTPLSELGPQCEAQRERIRKLFESGAGA
JGI25612J43240_10228141	3300002886	Grasslands Soil	MSSPRSGLVPSFRPKSKTMEEPQVTPLSELGPQCEAQRERIRKLFESGAGARETLRQLCELADGTIKKVYGELLRVRSAPAQGMALLALGGYGREMLF
Ga0062386_1013978142	3300004152	Bog Forest Soil	MSSPRPGLVPGIRPKKKMEEPVTPLSVLGPHCEAQRERIRKLFENGASAQETLRQLCELADET
Ga0058899_113925453	3300004631	Forest Soil	MSSPRPGLIPSFRPKSKTMEEPQVTPLSELGPQCEAQRERIRKLFESGAGARETLRQLCELADVTIKKVFGELLRVRSAPAQGLALLAL
Ga0075029_1002460383	3300006052	Watersheds	MSAPRQSLVPRFRSENETKMEESATPLSVLGPECEAQRERIRKLFENGAGARETLRQLCELADTTIQKVYGELLRVRS
Ga0075017_1006495601	3300006059	Watersheds	MSHPRPALTSGFRPNKKMDESITPLSVLGPQCEARRERIRKLFESGASAHDTLRELCELADDTIRKVFAELLRVRDASSQG
Ga0075030_1007341613	3300006162	Watersheds	MASPRSGLDDGFRPNRKMTEPVSSFSVLGPQCNAQRERIRKLFYNGASAQDTLRQLCELADRTIQQVFTELLQVRQTPAQGFC
Ga0075014_1006742111	3300006174	Watersheds	MSSPRPGLDPGIRPIKKMEKSVTPLSVLGPQCEAQRERIRKLFENGASAQETLRQLCE
Ga0070765_1013054013	3300006176	Soil	VSPMSTPRPGLVSSFRPKKPMAESVTPLSVLGPQCDAQRERIRKLFENGASAQDTLR
Ga0079222_118117002	3300006755	Agricultural Soil	MSSPRSGLVPSFRPNSKPMDEPQVTPLSELGPQCEAQRERIRKLFENGAGARETLRQLCELADGTIRKVFGELLQ
Ga0116222_13163441	3300009521	Peatlands Soil	MTMATPRSGLEAGFRPNKKMPEPLSSSPGLGPQCDAQRERIRKLFDNGASAQDTLRQLCELADRTIQQVFAELLRARQTPAQGFCLLAL
Ga0116116_10483671	3300009621	Peatland	MTMASPRLGLEAGYRPKKKMTDPVSSLSVLGPQCDAQRERIRKLFDNGASAQDTLRQLCELADGAIQQVFAELLRSRQAPAQGFCLLALCGYGREMLFP
Ga0116106_12442532	3300009645	Peatland	MTMASPRLGLEAGYRPKKKMTDPVSSLSVLGPQCDAQRERIRKLFDNGASAQDTLRQLCELADGAIQQVFAELLRSRQAPAQGFCLL
Ga0116217_101460423	3300009700	Peatlands Soil	MTMASPRSGLDADFRPKRKMTEPVSSFSELGAQCDAQRERIRKLFYNGASAQDTLRQLCELADR
Ga0126384_109490053	3300010046	Tropical Forest Soil	MSSPRTDLAPGFRPPNKKMEEKPVTPLGELGPQVEAQRERIRKLFESGAGARETLRQLCELADGTI
Ga0074046_104416231	3300010339	Bog Forest Soil	MMASPRSGLTSGFSPKEKMADPVSPLTVLGPQCDAQRERIRKLFDNGASAQDTLRQLCELADGTIQQVFVELLRVRQLTPQGFCLLALGGYGRE
Ga0137363_107780952	3300012202	Vadose Zone Soil	MSSPRSGLVPSFRPKSKTMEEPQVTPLSELGPQCEAQRERIRKLFESVAGASETLRQLC*
Ga0137362_112971511	3300012205	Vadose Zone Soil	MSSPRSGLVPSFRPKSKTMEEPQVTPLSELGPQCEAQRERIRKLFESGAGARETLRQLCELADGTIKKVYGELLRVRSAPPQGMALL
Ga0137419_112094252	3300012925	Vadose Zone Soil	MSSPRSGLVPSFRPKSKTMEEPQVTPLSELGPQCEAQRERIRKLFESGAGARETLRQLCELADGTIKKVYGELLRVR
Ga0181527_13809192	3300014153	Bog	MTMASPRSGLEARFRPNKKMTDPASSLSVLRPQCDAQRERIRKQFDNGASAQDTLRQLCELADG
Ga0181532_100732361	3300014164	Bog	MSSPRPGLVPGIRPKKKMEESVTPLSVLGPQCEAQRERIRKLFESGASAQETLRQLCELADGT
Ga0182036_101836213	3300016270	Soil	MSSPRPGLVPSFRPQNEKMEDKQVTPLTELGPQCEAQRERIRKLFESGAGARETLRQLCELADNTIRKVFGELV
Ga0182032_104403531	3300016357	Soil	MSSPRPGLVPSFRPQNDNMEDKQVTPLAELGPQCEAQRERIRKLFESGAGARETLRQLCELADNTIRKVFGELVQ
Ga0182037_117875422	3300016404	Soil	MSSPHTGLVPSFRRLNKKMEEKQLTPLTELGPQVESQRERIRKLFENGAGARETLRQLCELADAAIRKVFGELLRVRGTPAHGMSLLALGGYGREMLFPIPTWICCFFSEAKKRKKSSAR
Ga0182039_107950893	3300016422	Soil	MSSPRSGLIPSFRPGKKMEKSKTPISVLGPQCEAQRERIQKLFENGASAQDTLRQLCELADGTIRKVFAELLSVRDEPAQGLSLLALGGYGRE
Ga0187802_102696491	3300017822	Freshwater Sediment	MSSPRPGLIPGIRPKRKMEEPVTPLSVLGPQCEAQRERIRKLFESGASAQETLRQLCELADET
Ga0187806_11578432	3300017928	Freshwater Sediment	MSSPRTGLVPSFRPPKKKMDDTPVTPLAELGPQVEAQRERIRKLFENGAGARETLRQLCELADGTIKKVFGELLRVRSTPAQGMSLLALGGYGREMLF
Ga0187814_100613823	3300017932	Freshwater Sediment	MSTPRLGLVRGVRPNKKMEESVTPLSVLGPQCEAQRERIRKLFQTGASAQETLRQLCELADEVIRKVFGE
Ga0187801_100217881	3300017933	Freshwater Sediment	MSSPRPGLIPGLRPKNKMEEPVTPLAVLGPQCEAQRERIRNLFDAGASAQETLRQLCELADG
Ga0187809_100162384	3300017937	Freshwater Sediment	MSSPRPGLIPGIRPKRKMEEPVTPLSVLGPQCEAQRERVRKLFESGASAQETLRQLCELADETIRKIFGELQSVRE
Ga0187819_102620093	3300017943	Freshwater Sediment	MSSPRPGLISGRPIKKMEEPATPLSVLGPQCEAQRERIRKLFESGASAQETLRQLCELADETIRKVFGELQSVRDGSNEG
Ga0187786_101148411	3300017944	Tropical Peatland	MSSPRPGLIPAVRPKNKMEESVTPLSVLGPHCDAQRERIRKLFESGASAQETLRQLCELADGTIRKVFG
Ga0187778_108739242	3300017961	Tropical Peatland	MSSPRPGLVPGIRPKKKMEEPATPLSVLGPQCEAQRERIRKLFESGASAQETLRQLCGLADETIRKIFGEL
Ga0187781_113891281	3300017972	Tropical Peatland	MSSPRPGFIPGVHSKSKMEEPVTPLSVLGPQCEAQRERIRNLFESGASAQETLRQLCELADATILKVFGELQQARSGGNQGLS
Ga0187780_103975003	3300017973	Tropical Peatland	MSSPRPGLVPSIRPQTKMEEPVTPLSVLGPQCEAQRERIRKFFESGASAQETLRQLCELA
Ga0187767_100524021	3300017999	Tropical Peatland	MRNGARALCNQGMSSPGSSLVPAFRPKNKMEESVTPLSVLGLQCDTQRERIRKLFESGASAQETLRQLCELADGTIRKVFGELQLVRSG
Ga0187805_104919892	3300018007	Freshwater Sediment	MSSPRPGLIPGIRPKRKMEEPVTPLSVLGPQCEAQRERIRKLFESGASAQETLRQLCELADETIRKIFGELQ
Ga0187810_100454743	3300018012	Freshwater Sediment	MSSPRPGLIPGVRPKNKMEESVTPLSVLGPQCEAQRERIRKLFDSGASAQETLRQLC
Ga0187784_113716131	3300018062	Tropical Peatland	MSSPRPGFIPGVHSKSKMEEPVTPLSVLGPQCETQRERIRNLFESGASAQETLRQLCELADATILKVFGELQQARSGGNQGLSLVALGG
Ga0187769_110581171	3300018086	Tropical Peatland	MASPRSGLAAGFRLNEKMTEPVSALSALGPHCDAQRERIRKLFDNGASAQDTLRQLCELADATIQKVF
Ga0210403_113384972	3300020580	Soil	MSSLRTGLVPRFRPKSKMMDEPQVTPLSELAPQCEAQRERIRKLFENGAGARETLRQLC
Ga0210401_114619371	3300020583	Soil	MSHPRPVLTPGFRPNRKMDEPNTPVSLLGPQCEARRERIRKLFESGASAHDTLRELCELADDTIRKVFAELLRVRDASSQGLCLLA
Ga0210404_105714972	3300021088	Soil	MSSPRPGLVPSFRPKSKTMEEPQVTPLSELGPQCEAQRERIRKLFESGAGARETLRQLCELADGTIKKVFGELLRVHSGPAQ
Ga0210408_109763062	3300021178	Soil	MSYPRPALTSSFRPNKKMDESNTPLSVLGPQCEARRERIRKLFESGASAHDTLRELCELADDTIRKVFAELLRVRDASPQGLCVLALGGYGR
Ga0210396_101348503	3300021180	Soil	MSSLRTGLVPRFRPKSKMMDEPQVTPLSELAPQCEAQRERIRKLFENGAGARETLRQLCELADGTIKKVFGELLRVRGAPAQGMALLALGGYGREMLF
Ga0210396_116926061	3300021180	Soil	VSPMSTPRPGLVSSFRPKKPMAESVTPLSVLGPQCDAQRERIRKLFENGASAQDTLRQLCELADNTIR
Ga0210388_116303572	3300021181	Soil	MSSPRPGLIPSFRLKSKPMEEPQVTPLSELGPQCEAQRERIRRLFENGAGARETLRQLCELADGTIKKVFGELLRVRSGPGQGLALLALGGY
Ga0210388_117352081	3300021181	Soil	MSSPRPGLIPRIRPTNKMEESVTPLSVLGPQCEAQRERIRKLFESGASAQETLRQLCELADEVIRKVF
Ga0210393_107524281	3300021401	Soil	MSSPRPGLAAGIRPKTKMEESVTPLSVLGPQCEAQRERIRKLFESGASAQETLRQLCELA
Ga0210394_111147332	3300021420	Soil	MSHPRPVLTPGFRPNRKMDEPNTPVSLLGPQCEARRERIRKLFESGASAHDTLRELCELADDTIRKVFAELLRVRDASSQGLCLLALGG
Ga0210384_102644153	3300021432	Soil	MSSPRPGLVPSFRPKSKTMEEPQVTPLSELGPQCEAQRERIRKLFESGAGARETLRQLCE
Ga0210384_116483181	3300021432	Soil	MSTPRPGLIPGFRLIAKMEEPAIPLPEFAAQCEAQRERIRKLFEAGATAQDTLRELCELADGAIKKVFGELVR
Ga0210391_104901853	3300021433	Soil	MSHPRPVLTPGFRPNRKMDEPNTPVSLLGPQCEARRERIRKLFESGASAHDTLRELCELADDTIRKVFAELLRVRDASSQGLCLL
Ga0213878_103861881	3300021444	Bulk Soil	MSSSRTSLSPGVGPKSKMEESVTPLSVLGPQCEAQRERIRKLFEAGASAQETLRQLCELADA
Ga0210402_111811333	3300021478	Soil	MSYPRPALTSSFRPNKKMDEPITPLSVLGPQCEARRERIRKLFESGASAHDTLRELCELADDTIRKVFAE
Ga0242652_10201811	3300022510	Soil	MSSPRPGLVPSFRPKSKTMEEPQVTPLSELGPQCEAQRERIRRLFENGAGARETLRQLCELADGTIK
Ga0242653_10364351	3300022712	Soil	MSSPRPGLIPSFRPKRKTMEEPQVTPLSELAPQCEAQRERIRKLFESGAGARETLRQLCELADGTIKKVFGELLRV
Ga0242661_10240583	3300022717	Soil	MSSPRPGLVPSFRPKSKPMDEPKVTPLSELGPQCEAQRERIRKLFENGAGARETLRQLCELADVTIKRVFGELLRVRSDPAQGLALLALGGYGREMLF
Ga0242654_102183651	3300022726	Soil	MSSPRPGLIPSFRPKSKTMEEPQVTPLSELGPQCEAQRERIRKLFESGAGARETLRQL
Ga0242654_103675762	3300022726	Soil	MSAPRPGLVPSFRAKSKPMEEPQVTPLSELGPQCEAQRERIRKLFENGAGARETLRQLCELADGTIKKVFGELLRVHGTPAQGMALLALGGYGREMLF
Ga0247694_10297482	3300024178	Soil	MSSPRPGLVPSFRPKHKTMDEPKVTPLSELGPQCEAQRERIRKLFENGAGARETLRQLCELADGTIKKVFGELLRVRGGPAQGMALLALGGYGREML
Ga0208686_11121992	3300025500	Peatland	MASPRLGLEAGYRPKKKMTDPVSSLSVLGPQCDAQRERIRKLFDNGASAQDTLRQLCELADGAIQQVFAELLRSRQAPAQGFCLL
Ga0257168_10998881	3300026514	Soil	MSSPRSGLVPSFRPKSKTMEEPQVTPLSELGPQCEAQRERIRKLFESGAGARETLRQLCELADGTIKKVFGELLRVRSAPAQGMALLALGGYGREMLF
Ga0209648_104738563	3300026551	Grasslands Soil	MSSPRSGLVPSFRPKSKPMEEPQVTPLSELGPQCEAQRERIRKLFESGAGARETLRQLCE
Ga0207781_10318821	3300026890	Tropical Forest Soil	MSSARPGLAPSKRPITKMEDSVTPLSVLAPQCDAQRERIRKLFESGASAQETLRQLCELADEIIRRVFGELQRV
Ga0208366_10278611	3300027073	Forest Soil	MSSPRPGLIPSFRPKRKTMEEPQVTPLSELAPQCEAQRERIRKLFESGAGARETLRQL
Ga0209418_10869532	3300027371	Forest Soil	MRNAAKALCKDPMSFARPGLIPSFRPKSKPMDEPQVTPLSELGPQCEAQRERIRKLFESGAGARETLRQLCELADGTIKKVFAELLRVRSGPAQGLALLALGG
Ga0208983_10699271	3300027381	Forest Soil	MSTPRPGLAGFRLIAKMEEPAISLPEFAAQCEAQRERIRKLFEAGATAQDTLRELCELADGAIRK
Ga0209622_10611703	3300027502	Forest Soil	MSSPRSGLVPSFRPKSKPMEEPQVTPLSELGPQCEAQRERIRKLFENGAGARETLRQLCELADGTIKKVFGELLRVRSAPAQGMALLA
Ga0208044_11742842	3300027625	Peatlands Soil	MTMASPRSGLEASFRPNKKMTDPVSSLSVLGPQCDAQRERIRKLFDNGASAQDTLRQLCELADGAIKQVF
Ga0209422_10916332	3300027629	Forest Soil	MSSPRPGLVPSFRTKSKMMEEPQVTPLSELGPQCEAQRERIRKLFESGAGARETLRQLCELADGTIKKVFGELLRVRSAPAQGMSLLALGGYGREMLFP
Ga0207862_11864331	3300027703	Tropical Forest Soil	MSSPRSGLVPAFRPKDKMEEPVTPLSVLGPQCDAQRERIRKLFESGASAQETLRQLCELADGTIRRVFGELQQVRNGGGQG
Ga0208989_102522252	3300027738	Forest Soil	MSTPRPGLAGFRLIAKMEEPAISLPEFAAQCEAQRERIRKLFEAGATAQDTLRELCELADGAIRKVFGELLRAHG
Ga0209283_107732182	3300027875	Vadose Zone Soil	MSSTRPGLVSGFRPYKKMEESVTPVSVLGPQCEAQRERIRKLFENGASAQETLRQLCELADGTIKKIFGELQRVRSGSSQGLCLLALGGYGREMLFP
Ga0209698_104000351	3300027911	Watersheds	MSAPRQSLVPRFRSENETKMEESATPLSVLGPECEAQRERIRKLFENGAGARETLRQLCELADTTIQKVYGELLRVRSAPR
Ga0222749_108261571	3300029636	Soil	MSSPRPGLVPSFRPKSKTMEEPQVTPLSELAPQCEAQRERIRKLFESGAGARETLRQLCELADGTIKKVF
Ga0170824_1174072181	3300031231	Forest Soil	MSSPRPGLIPSFRPKSKTMDEPQVTPLSELGPQCEAQRERIRKLFESGAGARETLRQLCELADGTIKKVFGELLRVRS
Ga0318516_105469451	3300031543	Soil	MSSPRPGLNPGVRPKKQMEESVTPLSVLGPQCESQRDRIRKLFESGASAQETLRQLCELADSTILKVFA
Ga0318534_106327132	3300031544	Soil	MSSSRPGLVPAFRPKNKMEESVTPLSVLGPQCDAQRERIKKLFESGASAQETLRQVCELA
Ga0318502_105568551	3300031747	Soil	MSSARPGLTPSNRPITKMEDSVTPLSVLAPQCDAQRERIRKLFESGASAQETLRQLCELADETIRKVFGELQRVREAGSQGLALFALGGYGRE
Ga0318509_108233751	3300031768	Soil	MSSPRPGLNPGVRPKKQMEESVTPLSVLGPQCESQRDRIRKLFESGASAQETLRQLCELADSTILK
Ga0318529_104818421	3300031792	Soil	MSSPRSGLIPSFRPGKKMEKSKTPISVLGPQCEAQRERIQKLFENGASAQDTLRQLCELADGTIRKVF
Ga0318568_101834653	3300031819	Soil	MSSPRPGLVPSFRPQNDKMEDKQVTPLTELGPQCEAQRERIRKLFESGAGARETLRQLCELADNTIRKVFGELVQVRGGASQ
Ga0307473_111396361	3300031820	Hardwood Forest Soil	MSSLRTGLVPRFRPKSKMMDEQQVTPLSELAPQCEAQRERIRKLFENGAGARETLRQLCELADGTIKKVFGELLRVRSAPAQGMALLALGGY
Ga0306919_113118092	3300031879	Soil	MSSPRPGLAFGIRSTKKMEEPVTPLSVLGPQCDAQRERIRKLFESSASAQETLRQLCELADETIGKVFGELQ
Ga0318520_106683502	3300031897	Soil	MSSPRPGLAFGIRSTKKMEEPVTPLSVLGPQCDAQRERIRKLFESSASAQETLRQLCELADETIGKVFG
Ga0310913_108121361	3300031945	Soil	MSSPRPGLAPAFRPKNKMEESVTPLSVLGPQCDAQRERIKKLFESGASAQETLRQLCELADGTIRKVFGELQQVRSESA
Ga0310913_110922842	3300031945	Soil	MSSPRPGLAFGIRSTKKMEEPVTPLSVLGPQCDAQRERIRKLFESSASAQETLRQLCELADETIGKVFGELQGVREAGSQGLALLALGGYGRE
Ga0318569_103218291	3300032010	Soil	MSSARPGLTPSNRPITKMEDSVTPLSVLAPQCDAQRERIRKLFESGASAQETLRQLCELADEIIRRVFGELQRVREAGSQGLALLALGGY
Ga0318558_106637272	3300032044	Soil	MSSARPGLTPSNRPITKMEDSVTPLSVLAPQCDAQRERIRKLFESGASAQETLRQLCELADEIIRRVFGELQRVREAGSQGLALLALGGYGRE
Ga0318514_102237193	3300032066	Soil	MPSARPDLAPSNRPITKMEDSVTPLSVLAPQCDAQRERIRKLFESGASAQETLRQLCELADETIRKV
Ga0306924_102635871	3300032076	Soil	MSSPRPGLAFGIRSTKKMEEPVTPLSVLGPQCDAQRERIRKLFESSASAQETLRQ
Ga0311301_119946523	3300032160	Peatlands Soil	MASPRSGLDGGFRPNRKMTEPVSSFSVLGPQCDAQRERIRKLFYNGASAQDTLRQLCELADRT
Ga0307471_1024673432	3300032180	Hardwood Forest Soil	MSSPRPGLVPSFRPNSKIMEEPQVTPLSELGPQCEAQRERIRKLFESGAGARETLRQLCELADGTIKKVYGELLRVRSAPPQGMALLALGGYGRE
Ga0306920_1036569141	3300032261	Soil	MSSPRPGLVPSFRPQNDNMEDKQVTPLAELGPQCEAQRERIRKLFESGAGARETLRQLC
Ga0335080_102037251	3300032828	Soil	MSSPRPGLVPSFRPHHNKKMAEEQVTPLSELGPQVEAQRERIRKLFENGAGARETLRQLCELADNTIKKIFGELLRVRSVP
Ga0335081_102858321	3300032892	Soil	MSTPRPGLVPGVRPKNKMKEPVTPLSVLGPQCEAQRERIRKLFESRASAQETLRQLCELADETIRKVFGELQQVRNEG
Ga0310914_113566252	3300033289	Soil	MSSPRTGLVPSFRPPNKKMEEKPVTPLAELGPQVEAQRERIRKLFENGAGARETLRQLCELADGTIKKVFGELLRVQGMPAQGMSLLAL
Ga0326728_100313599	3300033402	Peat Soil	MTMASPRSGLEARFRPNKKMTDPVSSLSVLRPQCDAQRERIRKQFDNGASAQDTLRQLCELADGTIHQVFAELLRVHQL
Ga0326728_106731963	3300033402	Peat Soil	MASPRSGLEARFRPNKKMTDPASSLSVLRPQCDAQRERIRKQFDNGASAQDTLRQLCELADGTIHQVFAELLRVHQL
Ga0326727_104705111	3300033405	Peat Soil	MSSPRPGLVSSIRPKKKMEEPVTPLSVLGPQCEAQRERIRKFFESGASAQETLRQLCELADETIRKIFAELQSVREGASQG
Ga0326727_110652582	3300033405	Peat Soil	MASPRSGLEARFRPNKKMTDPVSSLSVLGPQCDAQRERIRKQFGNGASAQDTLRQLCELADGTIHQVFAELLRVHQL
Ga0371490_10355583	3300033561	Peat Soil	MASPRSGLEARFRPNKKMTDPASSLSVLRPQCDAQRERIRKQFDNGASAQDTLRQLCELADGTIHQVFAELLRVHQLPAQGFCLL
Ga0314865_139555_452_643	3300033806	Peatland	MASPRPGLESGFPPNKKMTEPVSTFSALGPQCEAQRERIRKLFANGASAQDTLRQLCELADRMI
Ga0371487_0056830_2042_2242	3300033982	Peat Soil	MMASPRSGLASGFSSKKKMDDPVSPLTVLGPQCDAQRERIRKLFDNGASAQDTLRQLCELADSTIQQ
Ga0326724_0047380_2933_3169	3300034091	Peat Soil	MTMASPRSGLEARFRPNKKMTDPASSLSVLRPQCDAQRERIRKQFDNGASAQDTLRQLCELADGTIHQVFAELLRVHQL
Ga0326724_0055217_1_192	3300034091	Peat Soil	MMASPRSGLASGFSSKKKMDDPVSPLTVLGPQCDAQRERIRKLFDNGASAQDTLRQLCELADST
Ga0326724_0290571_2_223	3300034091	Peat Soil	MTMASPRSGLEARFRPNKKMTDPVSSLSVLGPQCDAQRERIRKQFGNGASAQDTLRQLCELADGTIHQVFAELL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086023

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences