Metagenome / Metatranscriptome Family F086008

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086008
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	47 residues
Representative Sequence	MRSLKFSVLDAFGDLRAGGLARPAAEKFAGAWLACFLVMARGNVLAAFS
Number of Associated Samples	95
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	96.40 %
% of genes from short scaffolds (< 2000 bps)	94.59 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (91.892 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.721 % of family members)
Environment Ontology (ENVO)	Unclassified (26.126 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.252 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.95% β-sheet: 0.00% Coil/Unstructured: 48.05%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF04343	DUF488	12.61
PF07690	MFS_1	8.11
PF08734	GYD	6.31
PF03401	TctC	5.41
PF04392	ABC_sub_bind	3.60
PF03691	UPF0167	1.80
PF11391	DUF2798	1.80
PF02082	Rrf2	1.80
PF05231	MASE1	1.80
PF00083	Sugar_tr	1.80
PF03061	4HBT	0.90
PF03358	FMN_red	0.90
PF03807	F420_oxidored	0.90
PF13378	MR_MLE_C	0.90
PF03928	HbpS-like	0.90
PF01977	UbiD	0.90
PF07883	Cupin_2	0.90
PF02738	MoCoBD_1	0.90
PF13586	DDE_Tnp_1_2	0.90
PF02705	K_trans	0.90
PF01042	Ribonuc_L-PSP	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG3189	Uncharacterized conserved protein YeaO, DUF488 family	Function unknown [S]	12.61
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	6.31
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	5.41
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	3.60
COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	Transcription [K]	1.80
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	1.80
COG3447	Integral membrane sensor domain MASE1	Signal transduction mechanisms [T]	1.80
COG3196	Colicin E2 tolerance protein CbrC, UPF0167 family	General function prediction only [R]	1.80
COG2524	Predicted transcriptional regulator, contains C-terminal CBS domains	Transcription [K]	1.80
COG2188	DNA-binding transcriptional regulator, GntR family	Transcription [K]	1.80
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	1.80
COG1959	DNA-binding transcriptional regulator, IscR family	Transcription [K]	1.80
COG1725	DNA-binding transcriptional regulator YhcF, GntR family	Transcription [K]	1.80
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	1.80
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	1.80
COG0640	DNA-binding transcriptional regulator, ArsR family	Transcription [K]	1.80
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	0.90
COG3158	K+ uptake protein Kup	Inorganic ion transport and metabolism [P]	0.90
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.89 %
Unclassified	root	N/A	8.11 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.89 %
Unclassified	root	N/A	8.11 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.89 %
Unclassified	root	N/A	8.11 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	73.87 %
Unclassified	root	N/A	8.11 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	59.46 %
Unclassified	root	N/A	8.11 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	44.14 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.11 %
Unclassified	root	N/A	8.11 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.80 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.90 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	44.14 %
Unclassified	root	N/A	8.11 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	3.60 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1.80 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.90 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.90 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	44.14 %
Unclassified	root	N/A	8.11 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	3.60 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1.80 %
Pandoraea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Pandoraea	0.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.90 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	44.14 %
Unclassified	root	N/A	8.11 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	2.70 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1.80 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.90 %
Mesorhizobium metallidurans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium metallidurans	0.90 %
Pandoraea pnomenusa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Pandoraea → Pandoraea pnomenusa	0.90 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	44.14 %
Unclassified	root	N/A	8.11 %
Mesorhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	2.70 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1.80 %
Bradyrhizobium sp. AUGA SZCCT0182	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0182	0.90 %
Mesorhizobium metallidurans STM 2683	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium metallidurans → Mesorhizobium metallidurans STM 2683	0.90 %
Pandoraea pnomenusa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Pandoraea → Pandoraea pnomenusa	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_115871904	All Organisms → cellular organisms → Bacteria	1093	Open in IMG/M
3300002568\|C688J35102_120641411	All Organisms → cellular organisms → Bacteria → Proteobacteria	1282	Open in IMG/M
3300003911\|JGI25405J52794_10167752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	503	Open in IMG/M
3300005162\|Ga0066814_10033984	All Organisms → cellular organisms → Bacteria → Proteobacteria	777	Open in IMG/M
3300005332\|Ga0066388_107116171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	563	Open in IMG/M
3300005364\|Ga0070673_101064923	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300005434\|Ga0070709_11742140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300005451\|Ga0066681_10720482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	606	Open in IMG/M
3300005457\|Ga0070662_101806163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	528	Open in IMG/M
3300005713\|Ga0066905_100884391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	780	Open in IMG/M
3300005713\|Ga0066905_101662785	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300005713\|Ga0066905_102167974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium metallidurans → Mesorhizobium metallidurans STM 2683	518	Open in IMG/M
3300005719\|Ga0068861_101795278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Pandoraea → Pandoraea pnomenusa	608	Open in IMG/M
3300005764\|Ga0066903_103031338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	910	Open in IMG/M
3300005764\|Ga0066903_105768493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	650	Open in IMG/M
3300005764\|Ga0066903_107811175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550	Open in IMG/M
3300006038\|Ga0075365_11154739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545	Open in IMG/M
3300006175\|Ga0070712_100129010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1914	Open in IMG/M
3300006178\|Ga0075367_10416706	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300006574\|Ga0074056_11383696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	651	Open in IMG/M
3300006755\|Ga0079222_11607475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	617	Open in IMG/M
3300006791\|Ga0066653_10301054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	808	Open in IMG/M
3300006871\|Ga0075434_101921146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	598	Open in IMG/M
3300006903\|Ga0075426_10393508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1022	Open in IMG/M
3300007076\|Ga0075435_100250703	All Organisms → cellular organisms → Bacteria → Proteobacteria	1507	Open in IMG/M
3300009036\|Ga0105244_10331082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	702	Open in IMG/M
3300009090\|Ga0099827_11054804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	705	Open in IMG/M
3300010048\|Ga0126373_10299273	All Organisms → cellular organisms → Bacteria	1603	Open in IMG/M
3300010359\|Ga0126376_12325969	All Organisms → cellular organisms → Bacteria → Proteobacteria	582	Open in IMG/M
3300010373\|Ga0134128_11139011	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300010376\|Ga0126381_102672180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	714	Open in IMG/M
3300011119\|Ga0105246_10729369	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300012200\|Ga0137382_11106380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	566	Open in IMG/M
3300012917\|Ga0137395_10218234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1333	Open in IMG/M
3300012924\|Ga0137413_10885583	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300012961\|Ga0164302_10910689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	676	Open in IMG/M
3300012971\|Ga0126369_10681842	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
3300013306\|Ga0163162_11573057	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300013308\|Ga0157375_11144362	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300014150\|Ga0134081_10334299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	552	Open in IMG/M
3300014326\|Ga0157380_11475235	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300015242\|Ga0137412_10299729	All Organisms → cellular organisms → Bacteria	1261	Open in IMG/M
3300015242\|Ga0137412_10596810	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300016319\|Ga0182033_10158002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1759	Open in IMG/M
3300016341\|Ga0182035_10386957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1172	Open in IMG/M
3300016341\|Ga0182035_11543801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	598	Open in IMG/M
3300016371\|Ga0182034_11381027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	615	Open in IMG/M
3300016387\|Ga0182040_10308236	All Organisms → cellular organisms → Bacteria	1213	Open in IMG/M
3300016404\|Ga0182037_10717980	Not Available	857	Open in IMG/M
3300016422\|Ga0182039_12234316	Not Available	505	Open in IMG/M
3300017965\|Ga0190266_11287488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	513	Open in IMG/M
3300019873\|Ga0193700_1058731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	592	Open in IMG/M
3300021559\|Ga0210409_11084225	All Organisms → cellular organisms → Bacteria → Proteobacteria	676	Open in IMG/M
3300021560\|Ga0126371_11814517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	731	Open in IMG/M
3300024288\|Ga0179589_10550134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300025915\|Ga0207693_10136038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1932	Open in IMG/M
3300025928\|Ga0207700_11254667	All Organisms → cellular organisms → Bacteria → Proteobacteria	661	Open in IMG/M
3300026067\|Ga0207678_10086688	All Organisms → cellular organisms → Bacteria	2675	Open in IMG/M
3300026142\|Ga0207698_10674561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1026	Open in IMG/M
3300027061\|Ga0209729_1030361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	670	Open in IMG/M
3300027882\|Ga0209590_10835378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	583	Open in IMG/M
3300027889\|Ga0209380_10820203	Not Available	526	Open in IMG/M
3300027903\|Ga0209488_10468971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	926	Open in IMG/M
3300028708\|Ga0307295_10015978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1808	Open in IMG/M
3300028717\|Ga0307298_10104200	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300028719\|Ga0307301_10252986	All Organisms → cellular organisms → Bacteria → Proteobacteria	575	Open in IMG/M
3300028720\|Ga0307317_10152054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	777	Open in IMG/M
3300028744\|Ga0307318_10121982	All Organisms → cellular organisms → Bacteria → Proteobacteria	888	Open in IMG/M
3300028782\|Ga0307306_10180586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	598	Open in IMG/M
3300028784\|Ga0307282_10351501	All Organisms → cellular organisms → Bacteria → Proteobacteria	712	Open in IMG/M
3300028784\|Ga0307282_10607225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	531	Open in IMG/M
3300028787\|Ga0307323_10026350	All Organisms → cellular organisms → Bacteria → Proteobacteria	2008	Open in IMG/M
3300028787\|Ga0307323_10163385	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300028793\|Ga0307299_10420934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	500	Open in IMG/M
3300028793\|Ga0307299_10421983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	500	Open in IMG/M
3300028799\|Ga0307284_10044290	All Organisms → cellular organisms → Bacteria → Proteobacteria	1543	Open in IMG/M
3300028819\|Ga0307296_10450765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	704	Open in IMG/M
3300028824\|Ga0307310_10039347	All Organisms → cellular organisms → Bacteria → Proteobacteria	1935	Open in IMG/M
3300028875\|Ga0307289_10452771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	527	Open in IMG/M
3300028884\|Ga0307308_10095966	All Organisms → cellular organisms → Bacteria → Proteobacteria	1410	Open in IMG/M
3300028885\|Ga0307304_10160584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	942	Open in IMG/M
3300029636\|Ga0222749_10782588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300031184\|Ga0307499_10082063	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300031573\|Ga0310915_10265929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1208	Open in IMG/M
3300031573\|Ga0310915_10690878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	720	Open in IMG/M
3300031573\|Ga0310915_11254418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	511	Open in IMG/M
3300031681\|Ga0318572_10624931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	642	Open in IMG/M
3300031716\|Ga0310813_11966321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	551	Open in IMG/M
3300031736\|Ga0318501_10044340	All Organisms → cellular organisms → Bacteria → Proteobacteria	2047	Open in IMG/M
3300031744\|Ga0306918_11299776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	559	Open in IMG/M
3300031765\|Ga0318554_10354634	Not Available	834	Open in IMG/M
3300031770\|Ga0318521_10608283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	661	Open in IMG/M
3300031771\|Ga0318546_10133196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1662	Open in IMG/M
3300031782\|Ga0318552_10536075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	598	Open in IMG/M
3300031794\|Ga0318503_10182134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	680	Open in IMG/M
3300031820\|Ga0307473_10681626	All Organisms → cellular organisms → Bacteria → Proteobacteria	720	Open in IMG/M
3300031833\|Ga0310917_10844389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	617	Open in IMG/M
3300031879\|Ga0306919_10162934	Not Available	1635	Open in IMG/M
3300031880\|Ga0318544_10439796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	507	Open in IMG/M
3300031890\|Ga0306925_11694357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	610	Open in IMG/M
3300031897\|Ga0318520_10483372	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300031910\|Ga0306923_10009218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9916	Open in IMG/M
3300031910\|Ga0306923_11128813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	842	Open in IMG/M
3300031910\|Ga0306923_11766870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	636	Open in IMG/M
3300031941\|Ga0310912_10762359	Not Available	748	Open in IMG/M
3300031942\|Ga0310916_10788864	Not Available	800	Open in IMG/M
3300032205\|Ga0307472_100238413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1416	Open in IMG/M
3300032205\|Ga0307472_101589225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	642	Open in IMG/M
3300034690\|Ga0364923_0016275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0182	1644	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.59%
Host-Associated	Host-Associated	14.41%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.59%
Plants	Host-Associated → Plants	14.41%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.01%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.60%
Roots	Host-Associated → Plants → Roots	1.80%
Floodplain	Environmental → Terrestrial → Floodplain	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.07%
Loam	Environmental → Terrestrial → Soil → Loam	12.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.31%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.60%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.70%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.80%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	30.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.70%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.90%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.71%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.11%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.60%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.60%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.70%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.80%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.80%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.90%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.90%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006574	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300019873	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027061	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034690	Sediment microbial communities from East River floodplain, Colorado, United States - 60_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1158719042	3300000956	Soil	MRSLKFSVLDALGDLRTAWFARPAAEKFAGAWLACFLVMARGNVL
C688J35102_1206414113	3300002568	Soil	MPSLKFSVVDSFDDLRASGLARPAAEKFAGAWLACFLVMARGNIF
JGI25405J52794_101677522	3300003911	Tabebuia Heterophylla Rhizosphere	MLDALSDLRDSGLVRPAAEKFAGAWLACFLVMARGNVLAAFSFEH
Ga0066814_100339841	3300005162	Soil	MPSLKVSMLDAFGDFRTSGLARPAAEKFAGAWLACFLVMARGNIFAAFT
Ga0066388_1071161711	3300005332	Tropical Forest Soil	MPSLNMTDVLGDLRTSGLVRPAAEKFAGAWLACFLVMARGN
Ga0070673_1010649232	3300005364	Switchgrass Rhizosphere	MPSLKFSVVDSFDDLRASGLARPAAEKFAGAWLACFLVMARGNI
Ga0070709_117421401	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MPSLKFSVVDSLDDLRASGLARPAAEKFAGAWLACFLVMAR
Ga0066681_107204821	3300005451	Soil	MPSLKRSILAAFDDFRASGLLRPAAEKFAGAWLACFLVMA
Ga0070662_1018061631	3300005457	Corn Rhizosphere	MRSLKLSVLDAFVELRTRGFARPAAEKFGGAWLACFLVMARGNVLAAFSFEHA
Ga0066905_1008843911	3300005713	Tropical Forest Soil	MPSLKNSALDALYDVRESGLVRPALEKFAGAWLACFLVMARGNV
Ga0066905_1016627852	3300005713	Tropical Forest Soil	MPSLKYGALDALYDVRDSGLVRPAVEKFAGAWLACFLVMARGNVLAAFSFE
Ga0066905_1021679741	3300005713	Tropical Forest Soil	MPSLRVNVLDAFPGLRTGGLARPAAEKFAGAWMSC
Ga0068861_1017952781	3300005719	Switchgrass Rhizosphere	MRSLKLSVLDAFDDLRTGGFARPAAEKFGGAWLACFLVMARGNVLAAFSFEHAFLASVC
Ga0066903_1030313382	3300005764	Tropical Forest Soil	MPSLSFNVAGASGFRGHGLARPAAEKFAGAWLACFLVMARGNIFAA
Ga0066903_1057684931	3300005764	Tropical Forest Soil	MRSRKFSVLDAFDDLRTGWFVRPAAEKFGGAWLACFLVMARGNVLAAFSFEHAFLA
Ga0066903_1078111752	3300005764	Tropical Forest Soil	MANLDVLGDLRASGLARPAVEKFAGAWLACFLVMARGNVLAAFSL
Ga0075365_111547391	3300006038	Populus Endosphere	MPSLKYSALDALYDVRDSGLVRPAVEKFAGAWLACFLVMARGNVLAAF
Ga0070712_1001290101	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRSLKLSVLDAFDDLRTGGFARPAAEKFGGAWLACFLVVARGNVLAAF
Ga0075367_104167061	3300006178	Populus Endosphere	MPSLKSNVVDTADDLHTSGLARPAAEKFAGAWLACFLVMARGNIFAAFT
Ga0074056_113836961	3300006574	Soil	MPSLKFSVVDSFDDLRASGLARPAAEKFAGAWLACFLVMARGNIFAA
Ga0079222_116074752	3300006755	Agricultural Soil	MRSLKFSVLDAFGDLRAGGLARPAAEKFAGAWLACFLVM
Ga0066653_103010541	3300006791	Soil	MSSLKLSVLDAFDDLRTSGLARPAAEKFAGAWLACFLVMARGNIFAAFSLEHMLLATV
Ga0066653_107515132	3300006791	Soil	MPDFKFAALDASEDLRAKGLARPALEKFAGAWLACFLVMARGDILGAFS
Ga0075434_1019211462	3300006871	Populus Rhizosphere	MSSLKLSVLDAFDDLRTRGLARPAAEKFAGAWLACFLVMARGN
Ga0075426_103935082	3300006903	Populus Rhizosphere	LRSLKLSVLDAFVDLRTRGFARPAAEKFGGAWLACFLVMARG
Ga0075435_1002507032	3300007076	Populus Rhizosphere	MPSLKLSVLDAFDEFRASGLARPAAEKFAGAWLACFLVMARGNIF
Ga0105244_103310821	3300009036	Miscanthus Rhizosphere	MPSLKFSVVDSFDDLRASGLARPAAEKFAGAWLACFLVMARGNIFAAFTLE
Ga0099827_110548041	3300009090	Vadose Zone Soil	MPSLKFSVLAFDDLRAGGLARPAAEKFAGAWLACFLVMARGNVLAAFSFEHALLASV
Ga0126373_102992732	3300010048	Tropical Forest Soil	MRSLKFSVLDAFDHLRTDRFARPAAEKFGGAWLACFLVMARGNVFAALSF
Ga0126376_123259692	3300010359	Tropical Forest Soil	MPSLKYSALDSLYDLRERGLVRPAAEKFAGAWLACFL
Ga0134128_111390112	3300010373	Terrestrial Soil	MPSLKFSVVDSFDDLRASGLARPAAEKFAGAWLACFLVM
Ga0126381_1026721801	3300010376	Tropical Forest Soil	MRSLKFSVLDAFDDLRTGWFARPAAEKFGGAWLACF
Ga0105246_107293691	3300011119	Miscanthus Rhizosphere	MPSLKFSVVDSFDDLRASGLARPAAEKFAGAWLACFLVMARGNIFAAFTLEHAQLAS
Ga0137382_111063802	3300012200	Vadose Zone Soil	MRSLKFSVLDAFGDLRAGGLARPAAEKFAGAWLACFLVMARGNVLAAFSFEHVFLASVCG
Ga0137395_102182341	3300012917	Vadose Zone Soil	MRSLKFSVLDAFGDLRAGGLARPAAEKFAGAWLACFLVMARGNVFAAFSFEHAFLA*
Ga0137413_108855831	3300012924	Vadose Zone Soil	MPSLKLSVLETFGDLRASGLARPAAEKFAGAWLACFLVMARGNI
Ga0164302_109106891	3300012961	Soil	MRSLKFSVLDAFGDLRAGGLARPAAEKFAGAWLACFLVMARGNVLAAFS
Ga0126369_106818421	3300012971	Tropical Forest Soil	MRSLKFSVLDAFDDLRTGWFARPAAEKFGGAWLACFLVMAR
Ga0163162_115730571	3300013306	Switchgrass Rhizosphere	MPSLKSNVVDTADDLRTSGLARPAAEKFAGAWLACFLVMARGNIFAAFTLEHAQLAS
Ga0157375_111443623	3300013308	Miscanthus Rhizosphere	MPSLKSNVVDTADDLRTRGLARPAAEKFAGAWLACFLVMARGNIFAAF
Ga0134081_103342991	3300014150	Grasslands Soil	MPSLKHSMLAAFDDFRASGLLRPAAEKFAGAWLAC
Ga0157380_114752352	3300014326	Switchgrass Rhizosphere	MPSLKFSVADTFDDLRASGLARPAAEKFAGAWLACFLVMARGN
Ga0137412_102997293	3300015242	Vadose Zone Soil	MPSLKLSVLETFGDLRASGLARPAAEKFAGAWLACFLVMARGNIFAAFSFEHAL
Ga0137412_105968102	3300015242	Vadose Zone Soil	MPSLKLSVLDAFDDLRASGLARPAAEKFAGAWLACFLVMARGNVFAAFSFEHMLLASV
Ga0182033_101580023	3300016319	Soil	MRSLKFNVLDAFDDLRTGGLARPAAEKFGGAWLACFLVMARGNVLAAFSFEHVF
Ga0182035_103869571	3300016341	Soil	MRSRKFSVLDAFDDVRAGWFVRPAAEKFGGAWLACFLVMARGNVLAAFSFEHAFLASVCG
Ga0182035_115438012	3300016341	Soil	MRSLKFSVLDAFDDLRTGWFARPVAEKFGGAWLACFLVMARGNVLAAFSFEHAFLA
Ga0182034_113810273	3300016371	Soil	MRSRKFSVLDAFDDLRAGWFVRPAAEKFGGAWLACFLVMARGNVLA
Ga0182040_103082361	3300016387	Soil	MRSLKFSVLDAFDDLRTGWFARPAAEKFGGAWLACFLVM
Ga0182037_107179803	3300016404	Soil	MRSRKFSVLDAFDDLRAGWFVRPAAEKFGGAWLACFLVMARGNVLAAFSFEHAFL
Ga0182039_122343161	3300016422	Soil	MRSLKFSVLDAFDDLRTGWFARPAAEKFGGAWLAC
Ga0190266_112874881	3300017965	Soil	MPSLKFSVVDSFDDLCASGLARPAAEKFAGAWLACF
Ga0193700_10587311	3300019873	Soil	MPSLKVSMLDAFGDFRTSGLARPAAEKFAGAWLACFLVMARGNIFAAFTFEHASLASI
Ga0210409_110842252	3300021559	Soil	MPSLRLSVLDAFDERTGGLARPALEKFAGAWLACFLVMARGNVFAAFSVEHIR
Ga0126371_118145173	3300021560	Tropical Forest Soil	MRSRKFSVLDAFDDLRTGWFVRPAAEKFGGAWLACFLVMARGNVLAAFSFEHAFL
Ga0179589_105501341	3300024288	Vadose Zone Soil	MRSLKLSVLDAFDDLRTGRFARPAAEKFGGAWLACFLVMARGNVFAAFSFEHA
Ga0207693_101360381	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MRSLKLSVLDAFDDLRTGGFARPAAEKFGGAWLACFLVVARGNVLAAFSFEHVFLA
Ga0207700_112546671	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MPSLKLSVLDAFDEFRASGLARPAAEKFAGAWLACFLVMARGN
Ga0207678_100866883	3300026067	Corn Rhizosphere	MPSLKLSVLDAFDEFRASGLARPAAEKFAGAWLACFLVMARGNIFAAFSFEHASLA
Ga0207698_106745613	3300026142	Corn Rhizosphere	MPSLKFSVVDSFDDLRASGLARPAAEKFAGAWLACFLVMARGNIFAAFTLEHAQLASVC
Ga0209729_10303611	3300027061	Forest Soil	MRSLKLSVLDAFVELRTRGFARPAAEKFGGAWLACFLVMARGNVLAAFS
Ga0209590_108353781	3300027882	Vadose Zone Soil	MPSLKFSVLAFDDLRAGGLARPAAEKFAGAWLACFLVMARGNVLAAFSFEHALLAS
Ga0209380_108202031	3300027889	Soil	MPSLRLSVLDAFDERTGGLARPALEKFAGAWLACFLVMARG
Ga0209488_104689711	3300027903	Vadose Zone Soil	MSSLKLSVLDAYDDLRTSGLARPAAEKFAGAWLACFLVMARGNI
Ga0307295_100159784	3300028708	Soil	MPSLKFSVADTFDDLRASGLARPAAEKFAGAWLACFLVMARG
Ga0307298_101042003	3300028717	Soil	MPSLKVNMLDTFGDYRSLARPAAEKFAGAWLACFLVMARGNIFAAFTFEHA
Ga0307301_102529861	3300028719	Soil	MPSLKVNMLDTFGDYRSLARPAAEKFAGAWLACFLVMARGNIFAAFTF
Ga0307317_101520541	3300028720	Soil	MPGLKLSVLDAFDDLRASGLARPAAEKFAGAWLACFLVMARGNVFAAFSFEH
Ga0307318_101219822	3300028744	Soil	MPSLKVSMLDAFGDFRTSGLARPAAEKFAGAWLACFLV
Ga0307306_101805862	3300028782	Soil	MPSLKVSMLDAFGDFRTSGLARPAAEKFAGAWLACFLVMARGNIFAAFTFEHASLASICG
Ga0307282_103515013	3300028784	Soil	MPSLKVSMLDAFGDFRTSGLGRPAAEKFAGAWLACFLVMARGNIFAAFTFEHASLAS
Ga0307282_106072251	3300028784	Soil	MPGLKLSVLDAFDDLRASGLARPAAEKFAGAWLACFLVMARGNVF
Ga0307323_100263501	3300028787	Soil	MPSLKVSMLDAFGDFRTSGLARPAAEKFAGAWLACFLVMA
Ga0307323_101633851	3300028787	Soil	MPSLKVNMLDTFGDYRSLARPAAEKFAGAWLACFLVMARGNIFAAFTFEHASLAS
Ga0307299_104209342	3300028793	Soil	MPSLKVSMLDAFGDFRTSGLARPAAEKFAGAWLACF
Ga0307299_104219831	3300028793	Soil	MQSFKLSVLDAFIDLRTRGFARPAAEKFGVAWLACFLVMARGNVLAAFSFEHAFLALV
Ga0307284_100442901	3300028799	Soil	MPSLKVSMLDAFGDFRTSGLARPAAEKFAGAWLACFLVMTR
Ga0307296_104507651	3300028819	Soil	MPGLKLSVLDAFDDLRASGLARPAAEKFAGAWLACFL
Ga0307310_100393472	3300028824	Soil	MPSLKVSMLDAFGDFRTSGLARPAAEKFAGAWLACFLVMTRGNIFAAF
Ga0307289_104527711	3300028875	Soil	MPSLKVSMLDAFGDFRTSGLARPAAEKFAGAWLACFLVMARGNIFA
Ga0307308_100959662	3300028884	Soil	MPSLKVSMLDAFGDFRTSGLARPAAEKFAGAWLFP
Ga0307304_101605843	3300028885	Soil	MPSLKFSVADTFDDLRASGLARPAAEKFAGAWLACFL
Ga0222749_107825881	3300029636	Soil	MRSLKLSVLDTFDDLRTRGFERPAAEKFGGAWLACFLVRARGNVLAAFSFDHAFLASVC
Ga0307499_100820631	3300031184	Soil	MPSLKFSVVDSFDDLRASGLARPAAEKFAGAWLACFLVMARG
Ga0310915_102659292	3300031573	Soil	MRSLKFSVLDAFDDLRTGWFARPAAEKFGGAWLACILVMARGNVLAAFSFEHAFLASV
Ga0310915_106908782	3300031573	Soil	MRSLKFSVLDAFDDLRTGGFARPAAEKFGGAWLACFL
Ga0310915_112544181	3300031573	Soil	MRSRKFSVLDAFDDLRAGWFVRPAAEKFGGAWLACFLVMARGNV
Ga0318572_106249313	3300031681	Soil	MRSLKFSVLDAFDDLRTGWFARPAAEKFGGAWLACFLVMARGNVLAAFS
Ga0310813_119663212	3300031716	Soil	MPSLKLSVLDAFDEFRASGLARPAAEKFAGAWLACFLVMARGNIFAAFTLEHAQL
Ga0318501_100443403	3300031736	Soil	MRGLRSGIFDSWDLRAGGLARPAAEKFAGAWLACF
Ga0306918_112997761	3300031744	Soil	MRSRKFSVLDAFDDLRTGWFVRPAAEKFGGAWLACFLVMARGNVLAAFS
Ga0318554_103546341	3300031765	Soil	MRSRKFSVLDAFDDLRAGWFVRPAAEKFGGAWLACFLVMARGNVLAAFSFEHA
Ga0318521_102309663	3300031770	Soil	MANLKFNALAWDDARTGGLARPAVEKFAGAWLACFLVMARGDIFGAFTLEHA
Ga0318521_106082831	3300031770	Soil	MRSRKFSVLDAFDDLRAGWFVRPAAEKFGGAWLACFLVMARGNVLAAFS
Ga0318546_101331961	3300031771	Soil	MPSLSFNVAGASGFRGHGLARPAAEKFAGAWLACFLVMARGNIFAAFTLEHAR
Ga0318552_105360751	3300031782	Soil	MPSLSFNVAGASGFRGHGLARPAAEKFAGAWLACFL
Ga0318503_101821342	3300031794	Soil	MPSLSFNVAGASGFRGHGLARPAAEKFAGAWLACFLVMARGNIFAAFTLEHAQLASMCG
Ga0307473_106816262	3300031820	Hardwood Forest Soil	MRSLKLSVLDAFDDLRTGGFARPAAEKFGGAWLACFLVMARGNVLAAFSFEHAFLAS
Ga0310917_108443891	3300031833	Soil	MRSRKFSVLDAFDDLRAGWFVRPAAEKFGGAWLACFLVMARGDVLAAF
Ga0306919_101629344	3300031879	Soil	MRSRKFSVLDAFDDLRTGWFVRPAAEKFGGAWLACFLVMARGNVLAAFSFE
Ga0318544_104397962	3300031880	Soil	MRSLKFSVLDAFDDLRTGWFARPVAEKFGGAWLACFLVMARGNVLAAFSFEHAF
Ga0306925_116943571	3300031890	Soil	MRSRKFSVLDAFDDLRAGWFVRPAAEKFGGAWLACFLVMARGNVLAAF
Ga0318520_104833721	3300031897	Soil	MRSLKFSVLDAFDDLRTGWFARPAAEKFGGAWLACILVM
Ga0306923_100092186	3300031910	Soil	MPSLSFNVAGASGFRGHGLARPAAEKFAGAWLACFLVMARGNIFAAFTL
Ga0306923_111288133	3300031910	Soil	MRSRKFSVLDAFDDLRAGWFVRPAAEKFGGAWLACFLVMARGNVLAAFSFEHAFLASV
Ga0306923_117668703	3300031910	Soil	MRSRKFSVLDAFDDLRTGWFVRPAAEKFGGAWLACFLVMARGNVLAAFSFEHAFLASV
Ga0310912_107623592	3300031941	Soil	MRSLKFSVLDAFDDLRTGGFARPAAEKFGGAWLACF
Ga0310916_107888643	3300031942	Soil	MRSRKFSVLDAFDDLRTGWFVRPAAEKFGGAWLAC
Ga0307472_1002384131	3300032205	Hardwood Forest Soil	MRSLKLSVLDAFVDLRTRGFARPAAEKFGGAWLACFLVMARGNVLAAFSFEHAFLASV
Ga0307472_1015892252	3300032205	Hardwood Forest Soil	MRSLKLSVLDAFDDLRTGGFARPAAEKFGGAWLACFLVMARGD
Ga0364923_0016275_1_153	3300034690	Sediment	MPSSKFSVLAYDELRAGGLARPAAEKFAGAWLACFLVMARGNIFAAFSFEH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086008

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences