Metagenome / Metatranscriptome Family F085984

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085984
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	60 residues
Representative Sequence	VSTQRTTPAEIRRFRVKHALRSIEDALSLLGDKPAEGIETSALERVREDLAVVLRTLEPAR
Number of Associated Samples	88
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.06 %
% of genes near scaffold ends (potentially truncated)	22.52 %
% of genes from short scaffolds (< 2000 bps)	79.28 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.387 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.919 % of family members)
Environment Ontology (ENVO)	Unclassified (28.829 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.360 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.31% β-sheet: 0.00% Coil/Unstructured: 51.69%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF07730	HisKA_3	19.82
PF02518	HATPase_c	18.02
PF01594	AI-2E_transport	10.81
PF00282	Pyridoxal_deC	3.60
PF10646	Germane	3.60
PF01263	Aldose_epim	0.90
PF11967	RecO_N	0.90
PF01654	Cyt_bd_oxida_I	0.90
PF04545	Sigma70_r4	0.90
PF00271	Helicase_C	0.90
PF03449	GreA_GreB_N	0.90
PF13396	PLDc_N	0.90
PF01272	GreA_GreB	0.90
PF07690	MFS_1	0.90
PF02322	Cyt_bd_oxida_II	0.90
PF02646	RmuC	0.90
PF06897	DUF1269	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	19.82
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	19.82
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	19.82
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	19.82
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	10.81
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	3.60
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	1.80
COG0676	D-hexose-6-phosphate mutarotase	Carbohydrate transport and metabolism [G]	0.90
COG1271	Cytochrome bd-type quinol oxidase, subunit 1	Energy production and conversion [C]	0.90
COG1294	Cytochrome bd-type quinol oxidase, subunit 2	Energy production and conversion [C]	0.90
COG1322	DNA anti-recombination protein (rearrangement mutator) RmuC	Replication, recombination and repair [L]	0.90
COG2017	Galactose mutarotase or related enzyme	Carbohydrate transport and metabolism [G]	0.90
COG4803	Uncharacterized membrane protein	Function unknown [S]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.39 %
Unclassified	root	N/A	12.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.39 %
Unclassified	root	N/A	12.61 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.39 %
Unclassified	root	N/A	12.61 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	84.68 %
Unclassified	root	N/A	12.61 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	83.78 %
Unclassified	root	N/A	12.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.61 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9.91 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	7.21 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	3.60 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.61 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5.41 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	4.50 %
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	3.60 %
Miltoncostaeales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales	1.80 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.90 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.90 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.61 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.50 %
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	3.60 %
Miltoncostaeaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae	1.80 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.90 %
unclassified Acidimicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales	0.90 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.90 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.61 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.50 %
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	3.60 %
Miltoncostaea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea	1.80 %
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.90 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.90 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.90 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.61 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.50 %
unclassified Gaiella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella	3.60 %
Miltoncostaea oceani	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani	1.80 %
Actinoplanes utahensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes utahensis	0.90 %
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.90 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.90 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.61 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.50 %
Gaiella sp. SCGC AG-212-M14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	3.60 %
Miltoncostaea oceani	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani	1.80 %
Actinoplanes utahensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes utahensis	0.90 %
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.90 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.90 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig1189471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1508	Open in IMG/M
3300000550\|F24TB_10458091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1152	Open in IMG/M
3300000956\|JGI10216J12902_100266028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1294	Open in IMG/M
3300000956\|JGI10216J12902_104045409	All Organisms → cellular organisms → Bacteria	1347	Open in IMG/M
3300000956\|JGI10216J12902_105203947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1222	Open in IMG/M
3300000956\|JGI10216J12902_111955767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2978	Open in IMG/M
3300004114\|Ga0062593_100121627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1904	Open in IMG/M
3300004114\|Ga0062593_100548042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1087	Open in IMG/M
3300004114\|Ga0062593_101413722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	744	Open in IMG/M
3300004479\|Ga0062595_101124640	Not Available	689	Open in IMG/M
3300004643\|Ga0062591_102438531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	549	Open in IMG/M
3300005146\|Ga0066817_1021717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	594	Open in IMG/M
3300005164\|Ga0066815_10025183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	859	Open in IMG/M
3300005166\|Ga0066674_10018274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3004	Open in IMG/M
3300005168\|Ga0066809_10029473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1154	Open in IMG/M
3300005169\|Ga0066810_10075063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	707	Open in IMG/M
3300005329\|Ga0070683_100070674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3256	Open in IMG/M
3300005329\|Ga0070683_100127992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2402	Open in IMG/M
3300005332\|Ga0066388_100319350	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani	2198	Open in IMG/M
3300005344\|Ga0070661_100951546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	711	Open in IMG/M
3300005507\|Ga0074259_10770753	Not Available	532	Open in IMG/M
3300005535\|Ga0070684_100006576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9002	Open in IMG/M
3300005535\|Ga0070684_100032603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4441	Open in IMG/M
3300005549\|Ga0070704_101005611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	754	Open in IMG/M
3300005564\|Ga0070664_100759686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	905	Open in IMG/M
3300005713\|Ga0066905_100002147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	7217	Open in IMG/M
3300005713\|Ga0066905_100038575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2804	Open in IMG/M
3300005713\|Ga0066905_100297270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1266	Open in IMG/M
3300005713\|Ga0066905_101836238	Not Available	560	Open in IMG/M
3300005764\|Ga0066903_100081445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4230	Open in IMG/M
3300005764\|Ga0066903_102462361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1007	Open in IMG/M
3300005764\|Ga0066903_105036907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	701	Open in IMG/M
3300006175\|Ga0070712_100783663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	817	Open in IMG/M
3300006575\|Ga0074053_11907714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	736	Open in IMG/M
3300006575\|Ga0074053_11970725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	981	Open in IMG/M
3300006577\|Ga0074050_11900128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	847	Open in IMG/M
3300006579\|Ga0074054_12106490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	994	Open in IMG/M
3300006604\|Ga0074060_11559869	Not Available	578	Open in IMG/M
3300006806\|Ga0079220_11843969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	534	Open in IMG/M
3300006871\|Ga0075434_100578687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1142	Open in IMG/M
3300006871\|Ga0075434_102281140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	544	Open in IMG/M
3300006881\|Ga0068865_102104044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	513	Open in IMG/M
3300006953\|Ga0074063_14142985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1245	Open in IMG/M
3300006954\|Ga0079219_11024188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	688	Open in IMG/M
3300009137\|Ga0066709_101163919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1135	Open in IMG/M
3300009137\|Ga0066709_103731885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	553	Open in IMG/M
3300010043\|Ga0126380_11227056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	648	Open in IMG/M
3300010047\|Ga0126382_10072860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2113	Open in IMG/M
3300010358\|Ga0126370_11395919	Not Available	661	Open in IMG/M
3300010360\|Ga0126372_12101844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	613	Open in IMG/M
3300010362\|Ga0126377_10934729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes utahensis	931	Open in IMG/M
3300010362\|Ga0126377_11354864	All Organisms → cellular organisms → Bacteria → Terrabacteria group	784	Open in IMG/M
3300010375\|Ga0105239_13387663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	518	Open in IMG/M
3300011107\|Ga0151490_1649555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1266	Open in IMG/M
3300012198\|Ga0137364_10254793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1297	Open in IMG/M
3300012350\|Ga0137372_10940844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	608	Open in IMG/M
3300012355\|Ga0137369_10606088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	761	Open in IMG/M
3300012358\|Ga0137368_10303855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1077	Open in IMG/M
3300012948\|Ga0126375_10198448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1315	Open in IMG/M
3300012948\|Ga0126375_10274239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	1156	Open in IMG/M
3300012955\|Ga0164298_10800717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	674	Open in IMG/M
3300012957\|Ga0164303_10220496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1065	Open in IMG/M
3300012972\|Ga0134077_10242354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	744	Open in IMG/M
3300012984\|Ga0164309_10228277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1299	Open in IMG/M
3300012984\|Ga0164309_11290591	Not Available	617	Open in IMG/M
3300012984\|Ga0164309_11793588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	526	Open in IMG/M
3300012988\|Ga0164306_10867296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	733	Open in IMG/M
3300012989\|Ga0164305_10071349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2124	Open in IMG/M
3300012989\|Ga0164305_11560269	Not Available	588	Open in IMG/M
3300015372\|Ga0132256_100285067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani	1731	Open in IMG/M
3300015374\|Ga0132255_104884222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	568	Open in IMG/M
3300018028\|Ga0184608_10012197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2952	Open in IMG/M
3300018031\|Ga0184634_10132216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1110	Open in IMG/M
3300018054\|Ga0184621_10015227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2287	Open in IMG/M
3300018067\|Ga0184611_1080369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1118	Open in IMG/M
3300018072\|Ga0184635_10035651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1886	Open in IMG/M
3300018073\|Ga0184624_10235668	Not Available	820	Open in IMG/M
3300018073\|Ga0184624_10311841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	705	Open in IMG/M
3300018073\|Ga0184624_10330042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	683	Open in IMG/M
3300018075\|Ga0184632_10090254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1340	Open in IMG/M
3300018081\|Ga0184625_10280189	Not Available	872	Open in IMG/M
3300018083\|Ga0184628_10449999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	671	Open in IMG/M
3300018433\|Ga0066667_10357299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1164	Open in IMG/M
3300018482\|Ga0066669_12420832	Not Available	504	Open in IMG/M
3300019867\|Ga0193704_1000809	All Organisms → cellular organisms → Bacteria	5921	Open in IMG/M
3300021078\|Ga0210381_10080546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1030	Open in IMG/M
3300022756\|Ga0222622_10010140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4434	Open in IMG/M
3300025899\|Ga0207642_10489653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	751	Open in IMG/M
3300025944\|Ga0207661_10237355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1616	Open in IMG/M
3300026116\|Ga0207674_10000884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	39178	Open in IMG/M
3300026324\|Ga0209470_1108204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1242	Open in IMG/M
3300027288\|Ga0208525_1005015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1379	Open in IMG/M
3300027775\|Ga0209177_10087048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	966	Open in IMG/M
3300028713\|Ga0307303_10179537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	518	Open in IMG/M
3300028717\|Ga0307298_10010159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2342	Open in IMG/M
3300028718\|Ga0307307_10063551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1094	Open in IMG/M
3300028768\|Ga0307280_10323899	Not Available	565	Open in IMG/M
3300028768\|Ga0307280_10344027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	549	Open in IMG/M
3300028810\|Ga0307294_10010381	All Organisms → cellular organisms → Bacteria	2303	Open in IMG/M
3300028876\|Ga0307286_10039991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1570	Open in IMG/M
3300028878\|Ga0307278_10017518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3320	Open in IMG/M
3300028885\|Ga0307304_10209240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	837	Open in IMG/M
3300031152\|Ga0307501_10129170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	668	Open in IMG/M
3300031170\|Ga0307498_10001423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3555	Open in IMG/M
3300031226\|Ga0307497_10240909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	803	Open in IMG/M
3300031547\|Ga0310887_10884528	Not Available	565	Open in IMG/M
3300031562\|Ga0310886_10252767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	987	Open in IMG/M
3300031740\|Ga0307468_100860741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	781	Open in IMG/M
3300034149\|Ga0364929_0191004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	675	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.19%
Host-Associated	Host-Associated	10.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.48%
Aquatic	Environmental → Aquatic	11.71%
Plants	Host-Associated → Plants	10.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.58%
Sediment	Environmental → Aquatic → Sediment	10.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.31%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.50%
Freshwater	Environmental → Aquatic → Freshwater	0.90%
Floodplain	Environmental → Terrestrial → Floodplain	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.16%
Loam	Environmental → Terrestrial → Soil → Loam	14.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.80%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.90%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.44%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.21%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.21%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.70%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.90%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	9.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.21%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.50%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.50%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.60%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.70%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.80%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.90%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005146	Soil and rhizosphere microbial communities from Laval, Canada - mgHAB	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005507	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Mutant cpr5	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300027288	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_06612830	2124908045	Soil	VTTRRTTPAEIRRFRVKHALRSIEDALSLLEHKPAEGVETSALERVRDDLAVVLRTLEPV
F24TB_104580912	3300000550	Soil	VTTRRTTPAEIRRFRVKHALRSIEDALSLLEHKPAEGVETSALERVRDDLAVVLRTLEPAR*
JGI10216J12902_1002660283	3300000956	Soil	VTTRRTTPAEIRRFRVKHALRSIEDALSLLEHKPAEGVETSALERVRDDLAVVLRTLEPVR*
JGI10216J12902_1040454095	3300000956	Soil	MNAQPSTTAEIRRFRVKHALRSIEDALTLLEDKPAEGIEMAALERVRDDLAVVLRRLEPAR*
JGI10216J12902_1052039472	3300000956	Soil	MTTQRTTPAELRRFRVKHALRSIEDALSLLEHKPVEGVETSALERVRDDLAVVLRTFEPAR*
JGI10216J12902_1119557672	3300000956	Soil	MTPSRTTPSEIRRFRVKHALRSIEDALSLLRDQPADGIETTALERVRDDLAVVLRTLEPAR*
Ga0062593_1001216273	3300004114	Soil	VSTQRTTPAEIRRFRVKHALRSIEDALSLLGDKPAEGIETSALERVREDLAVVLRTLEPAR*
Ga0062593_1005480422	3300004114	Soil	MSTQRSTPTEIRRFRIKHALRSIEDALSLLDDKPAEGIETSALERVREDLAVVLRTLEPAR*
Ga0062593_1014137222	3300004114	Soil	MTPSRTTPTEIHRFRVKHALRSIEDALSLLRDKPADGIETHALERVRDDLAVVLRTLEPAR*
Ga0062595_1011246403	3300004479	Soil	TPSRTTPSEIRRFRVKHALRSIEDALSLLRDQPAEGIETRALERVRDDLAVVLRTLEPAR
Ga0062591_1024385313	3300004643	Soil	STPTEIRRFRIKHALRSIEDALSLLDDKPAEGIETSALERVREDLAVVLRTLEPAR*
Ga0066817_10217172	3300005146	Soil	VNAKRTTPAEIHRFRVKHALRSIEDALILLDDEPAEGIETSALERVRDDLAVVLRTLEPAR*
Ga0066815_100251831	3300005164	Soil	EIRRFRVKHALRSIEDALTLLDDKPAEGIETSALERVRADLAVVLRTLEPAR*
Ga0066674_100182742	3300005166	Soil	VTTRRTSPAELRRFRVKHALRSIEDALNLLEDKPAEGIETSALERVRDDLSVVLRSLEPAR*
Ga0066809_100294734	3300005168	Soil	VNAQRTTPAEIHRFRVKHALRSIEDALSLLDDKPAEGIETSALERVRDDLAVVLRTLEPAR*
Ga0066810_100750632	3300005169	Soil	VNAQRTTPAEIHRFRVKHALRSIEDALSLLDDKPAEGIETSALERVRDDLAVVLRTLEP
Ga0070683_1000706746	3300005329	Corn Rhizosphere	MSTNRSTPAEIRRFRVKHALRSIEDALSLLRDRPAEGIETQALERVRDDLAVVLRTLEPAR*
Ga0070683_1001279924	3300005329	Corn Rhizosphere	MSRNRSTPAEIRRFRVKHALRSIEDALSLLRDRPAEGIETHALERVRDDLAVVLRTLEPAR*
Ga0066388_1003193502	3300005332	Tropical Forest Soil	MTPSRTTPAEIHRFRVKHALRSIEDALSLLRHRPAEGIETQALERVRDDLAVVLRTLEPAR*
Ga0070661_1009515461	3300005344	Corn Rhizosphere	TNRSTPAEIRRFRVRHALRSIEDALILLRDKPAEGIETQALERVRDDLAVVLRTLEPAR*
Ga0074259_107707531	3300005507	Arabidopsis Rhizosphere	MTPPRTTPTEIRRFRVKHALHSIEDALSLLRDKPADGIETQALERVRDDLAVVLRTLEPAT*
Ga0070684_1000065766	3300005535	Corn Rhizosphere	MSTNRSTPAEIRRFRVRHALRSIEDALSLLRDKPAEGIETQALERVRDDLAVVLRTLEPAR*
Ga0070684_1000326035	3300005535	Corn Rhizosphere	MSTNRSTPAEIRRFRVKHALRSIEDALSLLRDRPAEGIETHALERVRDDLAVVLRTLEPAR*
Ga0070704_1010056111	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VSTQRTTPAEIHRFRVKHALRSIEDALSLLDDKPADGIETSALERVRDDLAVVLRTLEPAR*
Ga0070664_1007596862	3300005564	Corn Rhizosphere	MSTNRSTPAEIRRFRVRHALRSIEDALILLRDKPAEGIETQALERVRDDLAVVLRTLEPAR*
Ga0066905_1000021474	3300005713	Tropical Forest Soil	MTPPRTTPAEIRHFRVKHALRSIEDALTLLEDKPAEGIETAALERVRDDLAVVLRTLEPAR*
Ga0066905_1000385753	3300005713	Tropical Forest Soil	MTPRHTTHAEIRRFRVKHALRSIEDALALLEDRPAEGIETQALERVRDDLAVVLRTLEPAR*
Ga0066905_1002972702	3300005713	Tropical Forest Soil	MNAQRSTTAEIRRFRVKHALRSIEDALILLEDRPAEGIETAALERVRDDLAVVLRTLEPAR*
Ga0066905_1018362381	3300005713	Tropical Forest Soil	RFRVKHALRSIEDALTLLEDKPAEGIETRALERVRDDLAVVLRTLPPAR*
Ga0066903_1000814454	3300005764	Tropical Forest Soil	MTPSRTTPAEIHRFRVRHALRSIEDALSLLRDKPAEGIETQALERVRDDLAVVLRTLEPAR*
Ga0066903_1024623612	3300005764	Tropical Forest Soil	MTPRRTTHAEIRRFRVKHALRSIEDALNLLADKPAEGIETQALERVREDLAVVLRTLEPAR*
Ga0066903_1050369072	3300005764	Tropical Forest Soil	MTPSRTTPAEIHRFRVKHALRSIEDALSLLRHKPAEGIETQALERVRDDLAVVLRTLEPAR*
Ga0066656_101591633	3300006034	Soil	SPADIRRFRVAQALKSIENALILLDSSPAEGVEISALERVRDDLGVVLRELTR*
Ga0070712_1007836634	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	PAEIRRFRVKHALRSIEDALTLLDDKPAEGIETSALERVREDLAVVLRTLEPAR*
Ga0074053_119077143	3300006575	Soil	MSTHRSSPAEIRRFRVKHALRSIEDALTLLDDKPAEGIETSALERVREDLAVVLRTLEPAR*
Ga0074053_119707251	3300006575	Soil	MSTHRSSPAEIRRFRVKHALQSIEDALTLLDDKPAEGIETSALERVREDLAVVLRTLEPAR*
Ga0074050_119001282	3300006577	Soil	VNTQRTTPAEIHRFRVKHALRSIEDALSLLDDKPAEGIETSALERVRDDLAVVLRTLEPAR*
Ga0074054_121064904	3300006579	Soil	VNAQRTTPAEIHRFRVKHALRSIEDALRLLDGRPAEGIETSALERVRDDLAVVLRTLEPAR*
Ga0074060_115598691	3300006604	Soil	MSRTNSAEIHRFRVKHALRSIEDALRLLDGKPAEGIETSALERVRDDLAVVLRTLEPAR*
Ga0079220_118439692	3300006806	Agricultural Soil	MTPPRTKPTDIRRFRVKHALRSIEDALSLLEDKPAEGIETQALERVRDDLAVVLRTLEPAA*
Ga0075425_1014144022	3300006854	Populus Rhizosphere	MSTQRSTPAEIRRFRVKHALHSIEDALSLLRDKPADGIETQALERVRDDL
Ga0075434_1005786873	3300006871	Populus Rhizosphere	MTTQRTTPAELRRFRVKHALRSIEDALSLLEHKPAEGVETSALERVRDDLAVVLRTLEPAR*
Ga0075434_1022811401	3300006871	Populus Rhizosphere	MSTQRSTPAEIRRFRVKHALRSIEDALSLLEEKPAEGIETTALERVREDLAVVLRTLEPAR*
Ga0068865_1021040442	3300006881	Miscanthus Rhizosphere	VSTQRTTPAEIHRFRVKHALRSIEDALSLLDDQPADGIETSALERVRDDLAVVLRTLEPAR*
Ga0074063_141429852	3300006953	Soil	MSTHRSSPAEIRRFRVKHALRSIEDALRLLDGKPAEGIETSALERVRDDLAVVLRTLEPAR*
Ga0079219_110241882	3300006954	Agricultural Soil	MTPPRTKPTEIRRFRVKHALRSIEDALSLLEDKPAEGIETQALERVRDDLAVVLRTLEPAA*
Ga0066709_1011639191	3300009137	Grasslands Soil	VTTRRTTPAELRRFRVKHALRSIEDALSLLGDKPAEGIETAALERVRDDLSVVLRSLAPAR*
Ga0066709_1037318851	3300009137	Grasslands Soil	MNAQRSTPAEIRRFRVKHALRSIEDALSLLDGRPAEGIETSALERVRDDLAVVLRTLEPAR*
Ga0126380_112270561	3300010043	Tropical Forest Soil	MNAQRSTTAEIRRFRVKHALRSIEDALILLEDRPAEGIETAALERVRDDLAVVLRTLEPA
Ga0126382_100728603	3300010047	Tropical Forest Soil	MTPSRTTPAEIRHFRVKHALRSIEDALSLLRDKPAEGIETQALERVRDDLTVVLRTLEPAR*
Ga0126370_113959192	3300010358	Tropical Forest Soil	MTPSRTTPAEISHFRVKHALRSIEDALSLLRDKPAEGIETQALERVRDDLAVVLRTLEPAR*
Ga0126372_121018442	3300010360	Tropical Forest Soil	MTPSRTTPTEIHHFRVKHALRSIEDALSLLRDKPADGIETQALERVRDDLAVVLRTLEPAR*
Ga0126377_109347291	3300010362	Tropical Forest Soil	MNAQRSTIAEVRRFRVKHALRSIEDALTLLEDRPAEGIETAALERVRDDLAVVLRTLEPAR*
Ga0126377_113548642	3300010362	Tropical Forest Soil	VPPLERLESMTPSRTTPAEIHRFRVKHALRSIEDALSLLRHRPAEGIETQALERVRDDLAVVLRTLEPAR*
Ga0105239_133876631	3300010375	Corn Rhizosphere	VSTQRTTPAELRRFRVKHALRSIEDALSLLGDKPAEGIETSALERVREDLAVVLRTLEPAR*
Ga0151490_16495552	3300011107	Soil	MSTHRSTPAEIRRFRVKHALRSIEDALTLLDDKPAEGIETSALERVRADLAVVLRTLEPAR*
Ga0137364_102547933	3300012198	Vadose Zone Soil	MNAHRSNSAEIRRFRVKHALRSIEDALSLLDDKPAEGIETSALERVREDLAVVLRTLEPAR*
Ga0137372_109408442	3300012350	Vadose Zone Soil	MNAHRSTPVEIRRFRVKHALRSIDDALSLLQERPAEGIETSALERVRDDLAVVLRTLEPAR*
Ga0137369_106060883	3300012355	Vadose Zone Soil	GAMNAQRSTPAEIRRFRVKHALRSIEDALSLLAHKPAEGVETSALERVRDDLAVVLRTLEPRSLSIAPIG*
Ga0137368_103038554	3300012358	Vadose Zone Soil	MNTHRSTPTEIRRFRVKHALRSIEDALSLLEHKPAEGVETSALERVRDDLAVVLRTLEPAR*
Ga0126375_101984483	3300012948	Tropical Forest Soil	MTPSRTTTAEIRHFRVKHALRSIEDALSLLRDKPAEGIETQALERVRDDLTVVLRTLEPAR*
Ga0126375_102742394	3300012948	Tropical Forest Soil	TPRRTTHAEIRRFRVKHALRSIEDALNLLADKPAEGIETQALERVREDLAVVLRTLEPAR
Ga0164298_108007171	3300012955	Soil	MSTHRSSPPEIRRFRVKHALRSIEDALNLLEDKPAEGIETTALERVREDLAVVLRTLEPAR*
Ga0164303_102204961	3300012957	Soil	LFSHDTTPTEIRRFRIKHALRSIEDALSLLDDKPAEGIETSALERVREDLAVVLRTLEPAR*
Ga0134077_102423543	3300012972	Grasslands Soil	VTTRRTTPAELRRFRVKHALRSIEDALSLLGDKPAEGIETAALERVRDDLSVVLRSLEPAR*
Ga0164309_102282771	3300012984	Soil	MSTHRSSPAEIRRFRVKHALRSIEDALNLLDDKPAEGIETSALERVREDLAV
Ga0164309_112905912	3300012984	Soil	MTTQRATPAELRRFRVKHALRSIEDALSLLEHKPAEGVETSALERVRDDLAVVLRTLEPAR*
Ga0164309_117935881	3300012984	Soil	KTRRSVIERLEGMSTQRSTPTEIRRFRIKHALRSIEDALSLLDDKPAEGIETTALERVREDLAVVLRTLEPAR*
Ga0164306_108672962	3300012988	Soil	MSTHRSSPAEIRRFRVKHALQSIEDALTLLDDKPAEGIETSALERVRADLAVVLRTLEPAR*
Ga0164305_100713492	3300012989	Soil	MSTQRSTPTEIRRFRIKHALRSIEDALSLLDDKPAEGIETTALKRVREDLAVVLRTLEPAR*
Ga0164305_115602692	3300012989	Soil	MARTNSTEIHRFRVKHALRSIEDALRLLDGKPAEGIETSALERVRDDLAVVLRTLEPAR*
Ga0132256_1002850674	3300015372	Arabidopsis Rhizosphere	MSRTNSAEIHRFRVKHALRSIEDALSLLDGKPAEGIETSALERVRDDLAVVLRTLEPAR*
Ga0132255_1048842223	3300015374	Arabidopsis Rhizosphere	EIRRFRVKHALRSIEDALTLLDDKPAEGIETSALERVREDLAVVLRTLEPAR*
Ga0184608_100121974	3300018028	Groundwater Sediment	VSTQRTTPAEIRRFRVKHALRSIEDALNLLGDKPAEGIETSALERVREDLAVVLRTLEPA
Ga0184634_101322162	3300018031	Groundwater Sediment	VSTQRTTPSEIRRFRVKHALRSIEDALSLLDDKPAEGIETSALERVRKDLAVVLRTLEPA
Ga0184621_100152272	3300018054	Groundwater Sediment	VSTQRTTPAEIRRFRVKHALRSIEDALKLHGDKTAEGIETSALERVREDLAVVLRTLEPA
Ga0184611_10803694	3300018067	Groundwater Sediment	MKANRLNSAEIRRFRVKHALRSIEDALSLLDDKPAEGIETSALERVREDLAVVLRTLEPA
Ga0184635_100356514	3300018072	Groundwater Sediment	GGDVSTQRTTPSEIRRFRVKHALRSIEDALSLLDDKPAEGIETSALERVRKDLAVVLRTLEPAR
Ga0184624_102356682	3300018073	Groundwater Sediment	VTTQRTTSAELRRFRVKHALRSIEDALSLLEHKPAEGVETSALERVRDDLAVVLRTLEPA
Ga0184624_103118412	3300018073	Groundwater Sediment	VPGSTPADIRQFRVRHALRSIEDALSLLEGPPAEGIETRALERIRDDLAVVLRHAH
Ga0184624_103300422	3300018073	Groundwater Sediment	VSTQRTTPSEIRRFRVKHALRSIEDALSLLDDKPAEGIETSALERVREDLAVVLRTLEPA
Ga0184632_100902541	3300018075	Groundwater Sediment	VSTQRTTPAEIRRFRVKHALRSIEDALSLLDDKPAEGIETSALERVRKDLAVVLRTLEPA
Ga0184625_102801891	3300018081	Groundwater Sediment	VTTQRTTSAELRRFRVKHALGSIEDALSLLEHKPAEGVETSALERVRDDLAVVLRTLEPA
Ga0184628_104499993	3300018083	Groundwater Sediment	IRRFRVKHALRSIEDALSLLDDKPAEGIETSALERVREDLAVVLRTLEPAR
Ga0066667_103572991	3300018433	Grasslands Soil	VTTRRTTPAELRRFRVKHALHAVEDALALLRPAPAEGIEIAALERVRDDLAVVLRVADGQ
Ga0066669_124208321	3300018482	Grasslands Soil	VTTRRTSPAELRRFRVKHALRSIEDALNLLEDKPAEGIETSALERVRDDLSVVLRSLEPA
Ga0193704_100080910	3300019867	Soil	VPGSTPADIRQFCVRHALRSIEDALSLLEGPPAEGIETRALERIRDDLTVVLRLAAA
Ga0210381_100805461	3300021078	Groundwater Sediment	VSTQRTTPAEIRRFRVKHALRSIEDALSLLDAKPAEGIETSALERVREDLAVVLRTLEPA
Ga0222622_100101405	3300022756	Groundwater Sediment	LVFSPSAAADRRRFRVKHALRSIEDALHLLAGQPNEGIEIAALGRIRDDLAVVLRLAEADCS
Ga0207642_104896531	3300025899	Miscanthus Rhizosphere	VSTQRTTPAEIQRFRIKHALRSIEDALSLLDDKPADGIETSALERVRDDLAVVLRTLEPA
Ga0207661_102373554	3300025944	Corn Rhizosphere	MSRNRSTPAEIRRFRVKHALRSIEDALSLLRDRPAEGIETHALERVRDDLAVVLRTLEPA
Ga0207674_1000088412	3300026116	Corn Rhizosphere	MSTNRSTPAEIRRFRVRHALRSIEDALSLLRDKPAEGIETQALERVRDDLAVVLRTLEPA
Ga0209470_11082041	3300026324	Soil	TSPAELRRFRVKHALRSIEDALNLLEDKPAEGIETSALERVRDDLSVVLRSLEPAR
Ga0208525_10050153	3300027288	Soil	MSRTNSAEIHRFRVKHALQSIEDALTLLDDKPAEGIETSALERVREDLAVVLRTLEPAR
Ga0209177_100870482	3300027775	Agricultural Soil	MSTQRSTPAEIRRFRVKHALRSIEDALSLLEEKPAEGIETTALERVREDLAVVLRTLEPA
Ga0307303_101795371	3300028713	Soil	DVSTQRTTPAEIRRFRVKHALRSIEDALSLLDAKPAEGIETSALERVREDLAVVLRTLEPAR
Ga0307298_100101593	3300028717	Soil	VSTQRTTPAEIRRFRVKHALRSIEDALSLLDAKPAEGIETSALERVREDLAVVLRTLEP
Ga0307307_100635511	3300028718	Soil	QGGDVSTQRTTPAEIRRFRVKHALRSIEDALNLLGDKPAEGIETSALERVREDLAVVLRTLEPAR
Ga0307280_103238992	3300028768	Soil	PGSTPADIRQFCVRHALRSIEDALSLLEGPPAEGIETRALERIRDDLTVVLRLAAA
Ga0307280_103440271	3300028768	Soil	DVSTQRTTPAEIRRFRVKHALRSIEDALNLLGDKPAEGIETSALERVREDLAVVLRTLEPAR
Ga0307294_100103814	3300028810	Soil	VPGSTPADIRQFCVRHALRSIEDALSLLEGPPAEGIETRALERIRDDLTVVLRL
Ga0307286_100399913	3300028876	Soil	VSTPRTTPAEIRRFRVKHAMRSIEDALSLLDDKPAEGIETSALERVREDLAVVLRTLEPA
Ga0307278_100175186	3300028878	Soil	VTTQRTTPAELRRFRVKHALRSIEDALSLLEHKPAEGVETSALERVRDDLAVVLRTLEPA
Ga0307304_102092401	3300028885	Soil	VPGSTPADIRQFCVRHALRSIEDALSLLEGPPAEGIETRALERISDDLTVVLRLAAA
Ga0307501_101291703	3300031152	Soil	DRVEPMNAHRSNSAEIRRFRVKHALRSIEDALNLLGDKPAEGIETSALERVREDLAVVLRTLELAR
Ga0307498_100014233	3300031170	Soil	MKANPSNSAEIRRFRVKHALRSIEDALNLLGDKPAEGIETSALERVREDLAVVLRTLEPA
Ga0307497_102409091	3300031226	Soil	MSTNRSTPAEIRRFRVKHALRSIEDALSLLDDKPAEGIETSALERVRQDLAVVLRTLEPA
Ga0310887_108845283	3300031547	Soil	MSRTNSAEIHRFRVKHALRSIEDALRLLDGKPAEGIETSALERVRDDLAVVLRTLEPAR
Ga0310886_102527671	3300031562	Soil	MSRTNSAEIHRFRVKHALRSIEDALSLLDGKPAEGIETSALERVRDDLAVVLRTLEPAR
Ga0307468_1008607412	3300031740	Hardwood Forest Soil	VSTQRTTPSEIRRFRVKHALRSIEDALSLLDDKPVDGIETSALERVRDDLAVVLRTLEPA
Ga0364929_0191004_410_595	3300034149	Sediment	VSTQRTTPAEIRRFRVKHALRSIEDALSLLGDKPAEGIETSALERVREDLAVVLRTLEPA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085984

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences