Metagenome / Metatranscriptome Family F085980

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085980
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	48 residues
Representative Sequence	MGSSTRIIKAALLAAAAALLAFAAFQLREKHQEAEAAVQNIHDQLDALDPA
Number of Associated Samples	100
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.18 %
% of genes near scaffold ends (potentially truncated)	98.20 %
% of genes from short scaffolds (< 2000 bps)	88.29 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.261 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (30.631 % of family members)
Environment Ontology (ENVO)	Unclassified (40.541 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.450 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 59.49% β-sheet: 0.00% Coil/Unstructured: 40.51%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF05239	PRC	8.11
PF16912	Glu_dehyd_C	2.70
PF00196	GerE	2.70
PF06305	LapA_dom	2.70
PF13191	AAA_16	1.80
PF01042	Ribonuc_L-PSP	1.80
PF00436	SSB	1.80
PF11139	SfLAP	1.80
PF10009	DUF2252	1.80
PF04185	Phosphoesterase	0.90
PF01047	MarR	0.90
PF08240	ADH_N	0.90
PF08241	Methyltransf_11	0.90
PF00465	Fe-ADH	0.90
PF12840	HTH_20	0.90
PF00999	Na_H_Exchanger	0.90
PF13424	TPR_12	0.90
PF00498	FHA	0.90
PF04525	LOR	0.90
PF00067	p450	0.90
PF08450	SGL	0.90
PF09976	TPR_21	0.90
PF00440	TetR_N	0.90
PF11578	DUF3237	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG3771	Lipopolysaccharide assembly protein YciS/LapA, DUF1049 family	Cell wall/membrane/envelope biogenesis [M]	2.70
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	1.80
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	1.80
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	1.80
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.90
COG0371	Glycerol dehydrogenase or related enzyme, iron-containing ADH family	Energy production and conversion [C]	0.90
COG1454	Alcohol dehydrogenase, class IV	Energy production and conversion [C]	0.90
COG1979	Alcohol dehydrogenase YqhD, Fe-dependent ADH family	Energy production and conversion [C]	0.90
COG2124	Cytochrome P450	Defense mechanisms [V]	0.90
COG0337	3-dehydroquinate synthetase	Amino acid transport and metabolism [E]	0.90
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.90
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.90
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.90
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.90
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.90
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.90
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.90
COG4894	Putative phospholipid scramblase YxjI, Tubby2 superfamily	Lipid transport and metabolism [I]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.26 %
Unclassified	root	N/A	38.74 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.26 %
Unclassified	root	N/A	38.74 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.26 %
Unclassified	root	N/A	38.74 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	53.15 %
Unclassified	root	N/A	38.74 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	48.65 %
Unclassified	root	N/A	38.74 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.74 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	35.14 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.90 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.90 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.74 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	10.81 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	4.50 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.80 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.90 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.90 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.90 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.90 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.74 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	10.81 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.50 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.80 %
Janthinobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Janthinobacterium	0.90 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.90 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.90 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.74 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	10.81 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.50 %
Actinocatenispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinocatenispora	0.90 %
Cryobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium	0.90 %
Janthinobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Janthinobacterium	0.90 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.90 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.74 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	10.81 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.50 %
Actinocatenispora sera	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinocatenispora → Actinocatenispora sera	0.90 %
Cryobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium	0.90 %
Janthinobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Janthinobacterium	0.90 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.90 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459023\|GZGNO2B02IHH5I	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	503	Open in IMG/M
2228664022\|INPgaii200_c0780973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	700	Open in IMG/M
3300000956\|JGI10216J12902_102846082	Not Available	572	Open in IMG/M
3300004092\|Ga0062389_102390951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	699	Open in IMG/M
3300004152\|Ga0062386_101266693	Not Available	613	Open in IMG/M
3300004152\|Ga0062386_101875813	Not Available	500	Open in IMG/M
3300004472\|Ga0068974_1395974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	812	Open in IMG/M
3300004478\|Ga0068972_1350075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	899	Open in IMG/M
3300004972\|Ga0072325_1297372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	921	Open in IMG/M
3300005169\|Ga0066810_10104937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	630	Open in IMG/M
3300005332\|Ga0066388_101632269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium	1137	Open in IMG/M
3300005435\|Ga0070714_101197701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	741	Open in IMG/M
3300005437\|Ga0070710_11255173	Not Available	549	Open in IMG/M
3300005439\|Ga0070711_101067675	Not Available	695	Open in IMG/M
3300005764\|Ga0066903_104788362	Not Available	720	Open in IMG/M
3300005764\|Ga0066903_105157771	Not Available	692	Open in IMG/M
3300006028\|Ga0070717_11287980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	664	Open in IMG/M
3300006050\|Ga0075028_100279925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	924	Open in IMG/M
3300006059\|Ga0075017_101555083	Not Available	522	Open in IMG/M
3300006175\|Ga0070712_101018809	Not Available	717	Open in IMG/M
3300006176\|Ga0070765_102293363	Not Available	503	Open in IMG/M
3300006237\|Ga0097621_101059502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	760	Open in IMG/M
3300006579\|Ga0074054_10647227	Not Available	539	Open in IMG/M
3300006605\|Ga0074057_10026524	Not Available	777	Open in IMG/M
3300006854\|Ga0075425_101657482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Janthinobacterium	720	Open in IMG/M
3300006954\|Ga0079219_11156943	Not Available	664	Open in IMG/M
3300009147\|Ga0114129_12179515	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300009174\|Ga0105241_11714718	Not Available	611	Open in IMG/M
3300009177\|Ga0105248_10200904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2246	Open in IMG/M
3300010046\|Ga0126384_11613319	Not Available	611	Open in IMG/M
3300010048\|Ga0126373_13177133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	512	Open in IMG/M
3300010360\|Ga0126372_11635982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	684	Open in IMG/M
3300010361\|Ga0126378_10023530	All Organisms → cellular organisms → Bacteria	5377	Open in IMG/M
3300010366\|Ga0126379_12401155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	627	Open in IMG/M
3300010376\|Ga0126381_103343182	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	632	Open in IMG/M
3300010396\|Ga0134126_11207423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	840	Open in IMG/M
3300011067\|Ga0138594_1057865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	918	Open in IMG/M
3300011080\|Ga0138568_1153822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	930	Open in IMG/M
3300011084\|Ga0138562_1187637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	898	Open in IMG/M
3300011110\|Ga0138578_1233578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	891	Open in IMG/M
3300012948\|Ga0126375_10837687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	732	Open in IMG/M
3300012961\|Ga0164302_10804139	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300012971\|Ga0126369_13167223	Not Available	539	Open in IMG/M
3300012986\|Ga0164304_10644684	Not Available	797	Open in IMG/M
3300016357\|Ga0182032_11848081	Not Available	528	Open in IMG/M
3300016371\|Ga0182034_11655645	Not Available	562	Open in IMG/M
3300016387\|Ga0182040_10053385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2528	Open in IMG/M
3300016387\|Ga0182040_10427506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1045	Open in IMG/M
3300017933\|Ga0187801_10260314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	699	Open in IMG/M
3300017935\|Ga0187848_10275211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	706	Open in IMG/M
3300017959\|Ga0187779_10144181	Not Available	1464	Open in IMG/M
3300017973\|Ga0187780_10250164	Not Available	1241	Open in IMG/M
3300017974\|Ga0187777_10515460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	837	Open in IMG/M
3300017999\|Ga0187767_10115445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	764	Open in IMG/M
3300018060\|Ga0187765_10383138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	864	Open in IMG/M
3300018085\|Ga0187772_10381944	Not Available	978	Open in IMG/M
3300021171\|Ga0210405_10178531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1683	Open in IMG/M
3300021560\|Ga0126371_11467602	Not Available	811	Open in IMG/M
3300025906\|Ga0207699_11222540	Not Available	556	Open in IMG/M
3300025938\|Ga0207704_11825365	Not Available	523	Open in IMG/M
3300026859\|Ga0207859_1025301	Not Available	509	Open in IMG/M
3300031546\|Ga0318538_10190076	Not Available	1094	Open in IMG/M
3300031549\|Ga0318571_10090450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	986	Open in IMG/M
3300031561\|Ga0318528_10694720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	544	Open in IMG/M
3300031564\|Ga0318573_10006184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4803	Open in IMG/M
3300031572\|Ga0318515_10471862	Not Available	671	Open in IMG/M
3300031679\|Ga0318561_10822355	All Organisms → cellular organisms → Bacteria → Terrabacteria group	510	Open in IMG/M
3300031681\|Ga0318572_10250308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1042	Open in IMG/M
3300031682\|Ga0318560_10178596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1130	Open in IMG/M
3300031719\|Ga0306917_10140969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1779	Open in IMG/M
3300031723\|Ga0318493_10628644	Not Available	599	Open in IMG/M
3300031724\|Ga0318500_10275644	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300031747\|Ga0318502_10004889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5636	Open in IMG/M
3300031764\|Ga0318535_10001317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6809	Open in IMG/M
3300031771\|Ga0318546_10935013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	610	Open in IMG/M
3300031779\|Ga0318566_10452419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	630	Open in IMG/M
3300031797\|Ga0318550_10348635	Not Available	717	Open in IMG/M
3300031805\|Ga0318497_10877485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	503	Open in IMG/M
3300031819\|Ga0318568_10049296	Not Available	2423	Open in IMG/M
3300031819\|Ga0318568_10206700	Not Available	1211	Open in IMG/M
3300031831\|Ga0318564_10291579	All Organisms → cellular organisms → Bacteria → Terrabacteria group	721	Open in IMG/M
3300031833\|Ga0310917_10873956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	605	Open in IMG/M
3300031845\|Ga0318511_10175717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	945	Open in IMG/M
3300031846\|Ga0318512_10001556	All Organisms → cellular organisms → Bacteria	7166	Open in IMG/M
3300031890\|Ga0306925_10129809	Not Available	2703	Open in IMG/M
3300031890\|Ga0306925_11211506	All Organisms → cellular organisms → Bacteria → Terrabacteria group	756	Open in IMG/M
3300031894\|Ga0318522_10012341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2612	Open in IMG/M
3300031912\|Ga0306921_10077241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3830	Open in IMG/M
3300031912\|Ga0306921_11161720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinocatenispora → Actinocatenispora sera	862	Open in IMG/M
3300031941\|Ga0310912_10063301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2639	Open in IMG/M
3300031947\|Ga0310909_11590730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	518	Open in IMG/M
3300032001\|Ga0306922_10718964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1050	Open in IMG/M
3300032025\|Ga0318507_10433544	Not Available	572	Open in IMG/M
3300032054\|Ga0318570_10241120	Not Available	819	Open in IMG/M
3300032054\|Ga0318570_10399563	Not Available	627	Open in IMG/M
3300032054\|Ga0318570_10541958	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300032055\|Ga0318575_10248624	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300032063\|Ga0318504_10390734	Not Available	663	Open in IMG/M
3300032089\|Ga0318525_10713308	Not Available	510	Open in IMG/M
3300032160\|Ga0311301_10761113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1342	Open in IMG/M
3300032261\|Ga0306920_100849357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1337	Open in IMG/M
3300032261\|Ga0306920_101875843	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300032515\|Ga0348332_10762904	Not Available	769	Open in IMG/M
3300032770\|Ga0335085_10634917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1197	Open in IMG/M
3300032770\|Ga0335085_11084984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	859	Open in IMG/M
3300032770\|Ga0335085_11681661	Not Available	654	Open in IMG/M
3300032897\|Ga0335071_12015060	All Organisms → cellular organisms → Bacteria → Terrabacteria group	520	Open in IMG/M
3300033158\|Ga0335077_10275633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1852	Open in IMG/M
3300033289\|Ga0310914_10369093	Not Available	1298	Open in IMG/M
3300033803\|Ga0314862_0163663	Not Available	543	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.59%
Host-Associated	Host-Associated	5.41%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.29%
Aquatic	Environmental → Aquatic	6.31%
Plants	Host-Associated → Plants	5.41%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.39%
Freshwater	Environmental → Aquatic → Freshwater	4.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.60%
Sediment	Environmental → Aquatic → Sediment	1.80%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.90%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.90%
Roots	Host-Associated → Plants → Roots	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.81%
Loam	Environmental → Terrestrial → Soil → Loam	9.91%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.80%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.90%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.90%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.90%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	41.44%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.62%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.41%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.60%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.80%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.90%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.90%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.90%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.11%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.21%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.41%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.60%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.70%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.80%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.90%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.90%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.90%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.90%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459023	Grass soil microbial communities from Rothamsted Park, UK - FA3 (control condition)	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004472	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 71 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004478	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 69 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004972	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 42 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011067	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 41 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011080	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 53 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011084	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 47 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011110	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 65 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026859	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 25 (SPAdes)	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033803	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_0_10	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FA3_03017500	2170459023	Grass Soil	MSASTRIIRAVLLAAAAAALAIAAYQLREKRQEAELTAEGIHDQLDALDPATRAAVV
INPgaii200_07809731	2228664022	Soil	MGSSTRIIKAALLAGAAALLAFAAFQLREKHQEAEAIVQNIHDQLDALDPATRAAV
JGI10216J12902_1028460822	3300000956	Soil	MSASTRIIRAVLLAAAAAALAIAAYQLREKHQEAELTVQDIHDQLDALDPATRA
Ga0062389_1023909512	3300004092	Bog Forest Soil	MSSSTRIIRAALLTAAAAVLAVAAVQLRSKHQTAELTVQNIHDQLDALDPVTRAAV
Ga0062386_1012666931	3300004152	Bog Forest Soil	MGSSTRIIQAALLAAAAAVLAVAAFQLRSKHQTAELAVQTIQDQLDALDPVTRA
Ga0062386_1018758131	3300004152	Bog Forest Soil	MGPSTQIIRAVLLAAAAAVLAAAAYQLREKHQRADLAVQNIHDQLDALDP
Ga0068974_13959742	3300004472	Peatlands Soil	MNSSTRTIRAVLLAGAAVALGAAAFLLREKHQEAEAAVQNIQDQLDALDPATRAAV
Ga0068972_13500751	3300004478	Peatlands Soil	MNSSTRTIRAVLLAGAAVALGAAAFLLREKHQEAEAAVQNIQDQ
Ga0072325_12973722	3300004972	Peatlands Soil	MNSSTRTIRAVLLAGAAVALGAAAFLLREKHQEAEAAVQNIQDQLDALDPA
Ga0066810_101049373	3300005169	Soil	MSQSTRILRAVLLAAAAVALAAAAYQLREKHEEAELTVQDIHDQLDALDPATRAAV
Ga0066388_1016322691	3300005332	Tropical Forest Soil	MGISTRMIRAVLLAAAAAALAVAAYQLREKHQEAELTVQNIHDQLDALDPAT
Ga0070714_1011977013	3300005435	Agricultural Soil	MSVPARIIRGALLAAAAAVLAAAACQLREKHQEAELTVQNIHDQLNASDPA
Ga0070710_112551731	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MGSSTRIIRAALLAAAAAALVFAAFQLREKHQEAEAVVDT
Ga0070711_1010676752	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSVPARIIRGALLAAAAAVLAAAACQLREKHQEAELTVQNIHDQLNASDPATRTAVV
Ga0066695_101576624	3300005553	Soil	MSASTRIIRAVLLAAAAAALAIAAYQLREKHQEAELTVQDIHDQLD
Ga0066903_1047883621	3300005764	Tropical Forest Soil	MGSSKRIIQAALLAAAAVALTAAAYLLRGKHQEAEAAVQTIQDQL
Ga0066903_1051577712	3300005764	Tropical Forest Soil	MAISNRIIRAVLLAAAAAALAVAAYQLREKHLEADEAVQAIHDQLDALDP
Ga0070717_112879801	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSSSTRIIRAALLAAAAALLAYAASQLREKHQEADLAVQNIHDQLDALDP
Ga0075028_1002799251	3300006050	Watersheds	MGSSTRIIRAALLAAAAAVLVAAAFLLSEKHQEAEAAVQSIQ
Ga0075017_1015550832	3300006059	Watersheds	MGSSTRIIRAALLAAAAAALAFAAYQLREKHQVAEAVVQN
Ga0070712_1010188091	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MGSSTRIIRAVLLAAAAAVLAAAAYQLREKHQEADLAVQNIHDQLDALDPA
Ga0070765_1022933631	3300006176	Soil	MDSPTRIIRAALLAAAAVLLAFAASQLRDKHREAEAVVQNIHDQIDALDPATRAA
Ga0097621_1010595022	3300006237	Miscanthus Rhizosphere	MSSSTRIIRAALLAAAAALLAYAASQLREKHQEANLAVQNIHDQLDALDPATRA
Ga0074054_106472271	3300006579	Soil	MGSSTRIIRAALLAAAAAALVFAAFQLREKHQEAEALVQNIHDELDALDPATRA
Ga0074057_100265241	3300006605	Soil	MSASTRIIRAVLLAAAAAALAIAAYQLREKHQEAELTVQDIHDQLDALDPATR
Ga0075425_1016574823	3300006854	Populus Rhizosphere	MNSSARIIRVVLLAGAAVALAAAAYLLREKHQEAEGAVQSIEDQLDAL
Ga0079219_111569431	3300006954	Agricultural Soil	MGSSTRIIRAALLAAAAAALVFAAFQLREKHQEAEAVVDTIHDQLDALDPATRAAV
Ga0114129_121795152	3300009147	Populus Rhizosphere	MGSSTRIIRAALLAAAAAALVFAAFQLREKHQEGEAVVQNIHDELD
Ga0105241_117147182	3300009174	Corn Rhizosphere	MSSSTRIIRAALLAAAAALLAYAASQLREKHQEADLAVQNIHDQLDALD
Ga0105248_102009044	3300009177	Switchgrass Rhizosphere	MSSSTRIIRAALLAAAAALFAYAASQLREKHQEANLAVQNIHDQLD
Ga0126384_116133192	3300010046	Tropical Forest Soil	MAISKRIIRAVLLAAAAAALAVAAYQLREKHLEADEAVQAIHDQLDALDPVTRAAVIA
Ga0126373_131771331	3300010048	Tropical Forest Soil	MAMSNRVIRALLLAAAAAALAVAAYQLREKHLEADEAVQAIHDRLDALDP
Ga0126372_116359821	3300010360	Tropical Forest Soil	MVLRRIIRTALLTAVAIVLAAAAYQLREKRQEDNTAVQDIEDQLDALDPVQR
Ga0126378_100235301	3300010361	Tropical Forest Soil	MTLSTRIIRALLLAAAAAALAVAAFQLREKHQEAE
Ga0126379_124011552	3300010366	Tropical Forest Soil	MGPSTRIIRAVLLTAAGVALAAAAFLLREKHQEAEAAVQTIQDQLDALDPATRAAV
Ga0126381_1033431821	3300010376	Tropical Forest Soil	VLLAAAAAALAVAAYQLREKHQEAGLAVQNIHDQLDALDPATRAAVIA
Ga0134126_112074232	3300010396	Terrestrial Soil	MGSPTRIIRAALLAAAAVFLAFAASQLRDKHREAEAFVQNIHD
Ga0138594_10578652	3300011067	Peatlands Soil	MNSSTRTIRAVLLAGAAVALGAAAFLLREKHQEAEAAVQNIQDQLDALD
Ga0138568_11538222	3300011080	Peatlands Soil	MNSSTRTIRAVLLAGAAVALGAAAFLLREKHQEAEAAVQNIQDQLDALDPATRA
Ga0138562_11876372	3300011084	Peatlands Soil	MNSSTRTIRAVLLAGAAVALGAAAFLLREKHQEAEAAVQNIQD
Ga0138578_12335782	3300011110	Peatlands Soil	MNSSTRTIRAVLLAGAAVALGAAAFLLREKHQEAEAAVQN
Ga0126375_108376872	3300012948	Tropical Forest Soil	MKLPARIIRAVLLAAAAVALAAAAYQLREKHQEAEQAVQNIHDQLDALDPVTRAAVIA
Ga0164302_108041391	3300012961	Soil	MGSSTRIIRAALLAAAAAALVFAAFQLREKHQEAEAVVQNIHDELDALDPATR
Ga0126369_131672231	3300012971	Tropical Forest Soil	MGSSTRVIRAALLAAAAMAFAAAAFLLREKHQEAEAAVQTIQDQLDALDPATRA
Ga0164304_106446842	3300012986	Soil	MGSSTRIIRAALLAAAAAALVFAAFQLREKHQEAEAVVDTIHDQLDALDPA
Ga0182032_118480811	3300016357	Soil	MGSSTRIIQAALLAGAAALLAFAAFQLREKHQEAEA
Ga0182034_116556451	3300016371	Soil	MGSSKRIIQAVLLAAAATALAAAAYLLREKHQEAEVAVQTIQDQLDA
Ga0182040_100533856	3300016387	Soil	MGSSTRIIQAALLAGAAALLAFAAFQLREKHQEAEAVVQDIHDQLDALDPAT
Ga0182040_104275061	3300016387	Soil	MGMSKRGIRAVLLVAAAAALAAAAYQLREKHQEAELAVQNINDQLDALDPATRA
Ga0187801_102603141	3300017933	Freshwater Sediment	MGSSTRIIKAALLAGAAALLAFAAFQLREKHQEAE
Ga0187848_102752112	3300017935	Peatland	MSSSTRIIRAALLTAAAAVLAVAAAQLRGKHQTAELAVQNIQDQLDAL
Ga0187779_101441812	3300017959	Tropical Peatland	MNSSTRVFRAVLLAGAAVALGAAAFLLREKHQEAEAAVQTIQDQLDALDPDLR
Ga0187780_102501643	3300017973	Tropical Peatland	MGSPTRIIRAALLAGAAALLAFAALQLREKHLEAEAVVQSIHDQLDALD
Ga0187777_105154601	3300017974	Tropical Peatland	MHSSTRIIRAVLLGAAAAILAAAAYQLREKHQEADLAVQNIHDQLDALDPAT
Ga0187767_101154452	3300017999	Tropical Peatland	MGSPTRIIRAALLAGAGALLAFAAFQLREKHQEAEAVVQDIHDQLDALDPATRAAV
Ga0187765_103831383	3300018060	Tropical Peatland	MGVPTRILRAVLLAAAAAVLAAAAYQLREKHQEADLTVQNIHDQLDALD
Ga0187772_103819441	3300018085	Tropical Peatland	MGSPTRIIRAALLAGAAALLAFAALQLREKHLEAEAVVQSIHDQLDAL
Ga0210405_101785311	3300021171	Soil	MGSSTRIIRAALLAAAAVALAFAAAQLREKHHEAEAVVQNIHDQLDALDPAT
Ga0126371_114676021	3300021560	Tropical Forest Soil	MGSSTRVIRAALLAAAAVALTAAAFLLREKHQEAEA
Ga0207699_112225402	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MSVSTRIIRGALLAAAAAVLAAAAYQLREKHQEAELTVQNIHDQLDALDPATRAAVV
Ga0207704_118253652	3300025938	Miscanthus Rhizosphere	MSSSTRIIRAALLAAAAALLAYAASQLREKHQEANLAVQNIHDQLDAL
Ga0207859_10253011	3300026859	Tropical Forest Soil	MGSPTRIIRAALLAGAAALLAFAAFQLREKHQEAEAVVQNIHDQLDALDPAARAAVVAR
Ga0318538_101900761	3300031546	Soil	MGSSTRIIKAALLAAAAALLAFAAFQLREKHQEAEAAVQNIHDQLDALDPA
Ga0318571_100904501	3300031549	Soil	MGSSKRIIQAVLLAAAATALAAAAYLLREKHQEAEVAVQTIQD
Ga0318528_106947201	3300031561	Soil	MGSSTRIIQAALLAGAAVLLAFAAFQLREKHQEAEAVVQNIHD
Ga0318573_100061845	3300031564	Soil	MSMSPRVIRALLLAAAAAALAFAASQFREKHQEAALTVQNIHDQLDAL
Ga0318515_104718621	3300031572	Soil	MGSSTRMIKAALLAAAAALLAFAAFQLREKHQEAEAAVQNIHDQLDALD
Ga0318561_108223551	3300031679	Soil	MGSSTQIMRAALLAAAAVALVAAAYLLREKHQEAEAAVQTIQDQLDALDPATRAA
Ga0318572_102503083	3300031681	Soil	MGMSKRGIRAVLLVAAAAALAAAAYQLREKHQEADLAVQNIHDQLDALDPATRAA
Ga0318560_101785963	3300031682	Soil	MHSSTRIIRAVLLAAAAAILAAAAYQLREKHQEADLAVQNIHDQLDALD
Ga0306917_101409693	3300031719	Soil	MSSSTRIIRAALLAAAGVALAAAAYLLREKHQEAEAAVQDIQDQLDALDPAT
Ga0318493_106286441	3300031723	Soil	MSMSPRVIRALLLAAAAAALAFAASQFREKHQEAALTVQNIHDQLDALDPVTR
Ga0318500_102756441	3300031724	Soil	MGSSTQIMRAALLAAAAVALVAAAYLLREKHQEAEAAVQTI
Ga0318502_100048891	3300031747	Soil	MSMSPRVIRALLLAAAAAALAFAASQFREKHQEAALTVQNIHDQLDALD
Ga0318535_100013171	3300031764	Soil	MGSSTRIIQAALLAGAAVLLAFAAFQLREKHQEAEAVVQD
Ga0318546_109350132	3300031771	Soil	MSQSTRILRAVLLAAAALALAAAAYQLREKHEEAELTVQDIHDQLDAL
Ga0318566_104524191	3300031779	Soil	MHSSTRIIRAVLLAAAAAILAAAAYQLREKHQEADLAVQNIHDQLDA
Ga0318550_103486351	3300031797	Soil	MGMSKRVIRAVLLVAAAAALAAAAYQLREKHQEAELAVRNIHDQLDALDPATRA
Ga0318497_108774852	3300031805	Soil	MGMSKRVIRAVLLVAAAAALATAAYQLREKHQEAELAVRNIHDQLDALDPATRAAVIT
Ga0318568_100492961	3300031819	Soil	MGSSTRIIQAALLAGAAALLAFAAFQLREKHQEAEAVVQDIHDQLDALD
Ga0318568_102067002	3300031819	Soil	MGSSTRMIKAALLAAAAALLAFAAFQLREKHQEAEAAVQNIHDQLDALDPA
Ga0318564_102915791	3300031831	Soil	MGSSTQIMRAALLAAAAVALVAAAYLLREKHQEAE
Ga0310917_108739564	3300031833	Soil	MGSSTRIIQAALLAGAAVLLAFAAFQLREKHQEAEAVVQNIHDQL
Ga0318511_101757171	3300031845	Soil	MGSSKRIIQAALLAAAAVALTAAAYLLREKHQEAEAA
Ga0318512_100015568	3300031846	Soil	MSMSPRVIRALLLAAAAAALAFAASQFREKHQEAALTVQNIHDQLDALDPVTRAAVVT
Ga0306925_101298091	3300031890	Soil	MGSSTRIIQAALLAGAAALLAFAAFQLREKHQEAEAVV
Ga0306925_112115062	3300031890	Soil	MGSSTQIMRAALLAAAAVALVAAAYLLREKHQEAEAAV
Ga0318522_100123411	3300031894	Soil	MSSSTRIIRAALLAAAGVALAAAAYLLREKHQEAEAAVQDIQDQLDALDPA
Ga0306921_100772411	3300031912	Soil	MGMSKRGIRAVLLVAAAAALAAAAYQLREKHQEADLAVQNIHDQLDALDPATRAAVI
Ga0306921_111617201	3300031912	Soil	MGSSTRIIKAVLLAGAAALLAFAAFQLREKHQEAEAVVQ
Ga0310912_100633014	3300031941	Soil	MSMSPRVIRALLLAAAAAALAFAASQFREKHQEAALTVQNIHDQLDALDPVTRA
Ga0310909_115907301	3300031947	Soil	MGMSKRGVRAVLLVAAAAALAAAAYQLREKHQEAELAVQNIHDQLDALDPATRAA
Ga0306922_107189641	3300032001	Soil	MSQSTRILRAVLLAAAALALAAAAYQLREKHEEAELTVQDIHDQLDALDPVT
Ga0318507_104335441	3300032025	Soil	MGSSTRIIKAALLAAAAALLAFAAFQLREKHQEAEA
Ga0318570_102411203	3300032054	Soil	MGSSTRIIQAALLAGAAALLAFAAFQLREKHQEAEAVVQDIHD
Ga0318570_103995632	3300032054	Soil	MGSSKRIIQAALLAAAAVALTAAAYLLREKHQEAGAAVQTIQDQLDALDPAQRAGSR
Ga0318570_105419581	3300032054	Soil	MGSSTQIMRAALLAAAAVALVAAAYLLREKHQEAEAAVQT
Ga0318575_102486241	3300032055	Soil	MGSSTQIMRAALLAAAAVALVAAAYLLREKHQEAEAAVQTIQDQLDSLD
Ga0318504_103907341	3300032063	Soil	MGSSTRMIKAALLAAAAALLAFAAFQLREKHQEAEAAVQNIHDQLDAL
Ga0318525_107133081	3300032089	Soil	MSQSTRILRAVLLAAAALALAAAAYQLREKHEEAELTVQDIHDQLDALDPVTRAAVVT
Ga0311301_107611133	3300032160	Peatlands Soil	MSQAPIIRVLLLAAAAAILVAAAEGLRHKHQQADLTVQNIHDQLDALDPATRS
Ga0306920_1008493573	3300032261	Soil	MSMSPRVIRALLLAAAAAALAFAASQFREKHQEAALTVQNIHDQLDA
Ga0306920_1018758431	3300032261	Soil	MGSSTQIMRAALLAAAAVALVAAAYLLREKHQEAEAAVQTIQDQLDSLDPAT
Ga0348332_107629041	3300032515	Plant Litter	MGSSTRIIRAALLAAAAAALAFAAYQLREKHQEAEAVVQ
Ga0335085_106349171	3300032770	Soil	MGSSTRIIRGALLAAAAAALVAAAYLLRENHQEAEAAV
Ga0335085_110849842	3300032770	Soil	MGSPTRIIRVALLAAAAALLAFAASQLREKHREAEAAVQNIHDQLDAL
Ga0335085_116816611	3300032770	Soil	MGSSKRIIQAALLAAAAVALTAAAYLLREKHQEAEAAVQTIQDQLDALDPAQ
Ga0335071_120150601	3300032897	Soil	MGSSTQIMRAALLAAAAVALVAAAYLLREKHQEAEAAVQTIQD
Ga0335077_102756334	3300033158	Soil	MSSSSTRIIRAALLAAAAVVLAIAAAQLREKHHEAEDAVQSIHDQLDALDPAT
Ga0310914_103690931	3300033289	Soil	MGSSTRIIQAALLAGAAVLLAFAAFQLREKHQEAEAVVQDIH
Ga0314862_0163663_436_543	3300033803	Peatland	MNSSTRVFRAVLLAGAAVALGAAAFLLREKHQEAEA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085980

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences