Metagenome Family F085975

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085975
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	46 residues
Representative Sequence	LTKTKRVNVQSSKEIPATLDGEKVNLGRSAEIDFVSRALTVLVPAK
Number of Associated Samples	97
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.90 %
% of genes near scaffold ends (potentially truncated)	95.50 %
% of genes from short scaffolds (< 2000 bps)	89.19 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.297 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (23.423 % of family members)
Environment Ontology (ENVO)	Unclassified (46.847 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (38.739 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 29.73% Coil/Unstructured: 70.27%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF06745	ATPase	35.14
PF03631	Virul_fac_BrkB	17.12
PF13439	Glyco_transf_4	1.80
PF09061	Stirrup	1.80
PF01594	AI-2E_transport	1.80
PF13520	AA_permease_2	1.80
PF00781	DAGK_cat	1.80
PF13419	HAD_2	0.90
PF02653	BPD_transp_2	0.90
PF04977	DivIC	0.90
PF07730	HisKA_3	0.90
PF02518	HATPase_c	0.90
PF05957	DUF883	0.90
PF13460	NAD_binding_10	0.90
PF00144	Beta-lactamase	0.90
PF01936	NYN	0.90
PF04972	BON	0.90
PF00011	HSP20	0.90
PF01145	Band_7	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	17.12
COG1597	Phosphatidylglycerol kinase, diacylglycerol kinase family	Lipid transport and metabolism [I]	3.60
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	1.80
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.90
COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	General function prediction only [R]	0.90
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.90
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.90
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.90
COG2919	Cell division protein FtsB	Cell cycle control, cell division, chromosome partitioning [D]	0.90
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.90
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.90
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.90
COG4575	Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family	Translation, ribosomal structure and biogenesis [J]	0.90
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.90
COG4839	Cell division protein FtsL	Cell cycle control, cell division, chromosome partitioning [D]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.30 %
Unclassified	root	N/A	2.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.30 %
Unclassified	root	N/A	2.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.30 %
Unclassified	root	N/A	2.70 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	54.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.50 %
Unclassified	root	N/A	2.70 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	54.95 %
Unclassified	root	N/A	2.70 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	43.24 %
Unclassified	root	N/A	2.70 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	0.90 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.90 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.90 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.90 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	43.24 %
Unclassified	root	N/A	2.70 %
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	0.90 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.90 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.90 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.90 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	43.24 %
Unclassified	root	N/A	2.70 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	0.90 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	0.90 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.90 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.90 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	43.24 %
Unclassified	root	N/A	2.70 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	0.90 %
Opitutus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus	0.90 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.90 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.90 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	43.24 %
Unclassified	root	N/A	2.70 %
unclassified Opitutus	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus	0.90 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	0.90 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.90 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.90 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	43.24 %
Unclassified	root	N/A	2.70 %
Opitutus sp. ER46	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus → Opitutus sp. ER46	0.90 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	0.90 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.90 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.90 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17296352	All Organisms → cellular organisms → Bacteria	1205	Open in IMG/M
2088090015\|GPICI_9134685	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1076	Open in IMG/M
2170459003\|FZN2CUW02I65Z3	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	500	Open in IMG/M
2170459009\|GA8DASG02G8I0Q	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300000596\|KanNP_Total_noBrdU_T14TCDRAFT_1043621	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300000891\|JGI10214J12806_10094309	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	944	Open in IMG/M
3300000956\|JGI10216J12902_101728776	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	958	Open in IMG/M
3300000956\|JGI10216J12902_102017862	All Organisms → cellular organisms → Bacteria	2140	Open in IMG/M
3300001139\|JGI10220J13317_10351220	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300002090\|JGI24806J26614_1020124	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300002128\|JGI24036J26619_10018249	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1292	Open in IMG/M
3300002899\|JGIcombinedJ43975_10022126	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1022	Open in IMG/M
3300002899\|JGIcombinedJ43975_10107852	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	515	Open in IMG/M
3300004156\|Ga0062589_100985449	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	786	Open in IMG/M
3300004463\|Ga0063356_100131853	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2802	Open in IMG/M
3300004463\|Ga0063356_100781237	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300004479\|Ga0062595_100293038	All Organisms → cellular organisms → Bacteria → Proteobacteria	1091	Open in IMG/M
3300005093\|Ga0062594_102725805	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300005178\|Ga0066688_10136401	All Organisms → cellular organisms → Bacteria	1528	Open in IMG/M
3300005179\|Ga0066684_10514479	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300005184\|Ga0066671_10611543	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300005187\|Ga0066675_10325661	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1118	Open in IMG/M
3300005289\|Ga0065704_10393271	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	760	Open in IMG/M
3300005294\|Ga0065705_10012713	All Organisms → cellular organisms → Bacteria	2780	Open in IMG/M
3300005294\|Ga0065705_10023520	All Organisms → cellular organisms → Bacteria	3288	Open in IMG/M
3300005295\|Ga0065707_10015327	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1862	Open in IMG/M
3300005327\|Ga0070658_11007939	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300005329\|Ga0070683_102337424	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	513	Open in IMG/M
3300005339\|Ga0070660_101767110	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	527	Open in IMG/M
3300005354\|Ga0070675_100881780	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300005451\|Ga0066681_10318261	All Organisms → cellular organisms → Bacteria	953	Open in IMG/M
3300005454\|Ga0066687_10047617	All Organisms → cellular organisms → Bacteria → Proteobacteria	1981	Open in IMG/M
3300005546\|Ga0070696_100049340	All Organisms → cellular organisms → Bacteria → Proteobacteria	2924	Open in IMG/M
3300006046\|Ga0066652_101484970	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300006175\|Ga0070712_101569853	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300007258\|Ga0099793_10562300	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	570	Open in IMG/M
3300009137\|Ga0066709_101393414	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1020	Open in IMG/M
3300010043\|Ga0126380_11805637	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300010323\|Ga0134086_10204903	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	738	Open in IMG/M
3300010326\|Ga0134065_10117256	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	901	Open in IMG/M
3300010375\|Ga0105239_11425281	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	800	Open in IMG/M
3300010396\|Ga0134126_10573343	All Organisms → cellular organisms → Bacteria	1293	Open in IMG/M
3300012198\|Ga0137364_10075029	All Organisms → cellular organisms → Bacteria	2323	Open in IMG/M
3300012198\|Ga0137364_10188520	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1507	Open in IMG/M
3300012198\|Ga0137364_11222181	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	562	Open in IMG/M
3300012208\|Ga0137376_11737434	Not Available	515	Open in IMG/M
3300012211\|Ga0137377_10705769	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	943	Open in IMG/M
3300012285\|Ga0137370_10561683	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	703	Open in IMG/M
3300012356\|Ga0137371_11175374	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300012683\|Ga0137398_10719863	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	694	Open in IMG/M
3300012685\|Ga0137397_10560077	All Organisms → cellular organisms → Bacteria	851	Open in IMG/M
3300012882\|Ga0157304_1012966	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	964	Open in IMG/M
3300012882\|Ga0157304_1079589	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	562	Open in IMG/M
3300012924\|Ga0137413_10461398	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	927	Open in IMG/M
3300012927\|Ga0137416_10393636	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1172	Open in IMG/M
3300012930\|Ga0137407_11231979	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300012957\|Ga0164303_10163381	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1193	Open in IMG/M
3300012960\|Ga0164301_11091756	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	634	Open in IMG/M
3300013306\|Ga0163162_12897269	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300014157\|Ga0134078_10380705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	628	Open in IMG/M
3300014968\|Ga0157379_10661142	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300015200\|Ga0173480_10689668	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	639	Open in IMG/M
3300015241\|Ga0137418_10398267	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1124	Open in IMG/M
3300015242\|Ga0137412_10345751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1159	Open in IMG/M
3300015264\|Ga0137403_11469067	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	531	Open in IMG/M
3300015373\|Ga0132257_103095406	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	606	Open in IMG/M
3300015374\|Ga0132255_106281745	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M
3300018028\|Ga0184608_10043392	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1745	Open in IMG/M
3300018028\|Ga0184608_10078875	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1347	Open in IMG/M
3300018072\|Ga0184635_10079553	All Organisms → cellular organisms → Bacteria	1285	Open in IMG/M
3300018075\|Ga0184632_10334832	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300018076\|Ga0184609_10169498	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1010	Open in IMG/M
3300018433\|Ga0066667_11438326	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	607	Open in IMG/M
3300019881\|Ga0193707_1178265	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	565	Open in IMG/M
3300019882\|Ga0193713_1180424	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	550	Open in IMG/M
3300019885\|Ga0193747_1092120	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300019885\|Ga0193747_1109377	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	664	Open in IMG/M
3300019885\|Ga0193747_1117306	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	633	Open in IMG/M
3300019886\|Ga0193727_1103529	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300019886\|Ga0193727_1117304	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300020001\|Ga0193731_1043024	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1192	Open in IMG/M
3300021078\|Ga0210381_10179735	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	730	Open in IMG/M
3300021086\|Ga0179596_10563251	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	578	Open in IMG/M
3300021344\|Ga0193719_10257172	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	737	Open in IMG/M
3300021363\|Ga0193699_10176874	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300022892\|Ga0247753_1027993	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	660	Open in IMG/M
3300024288\|Ga0179589_10589546	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	520	Open in IMG/M
3300025290\|Ga0207673_1010747	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300025893\|Ga0207682_10588306	Not Available	525	Open in IMG/M
3300025918\|Ga0207662_11288984	Not Available	519	Open in IMG/M
3300025933\|Ga0207706_10044174	All Organisms → cellular organisms → Bacteria	3950	Open in IMG/M
3300025961\|Ga0207712_10778995	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	840	Open in IMG/M
3300026552\|Ga0209577_10003716	All Organisms → cellular organisms → Bacteria	14368	Open in IMG/M
3300027552\|Ga0209982_1062845	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	605	Open in IMG/M
3300028536\|Ga0137415_11394804	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	522	Open in IMG/M
3300028784\|Ga0307282_10542236	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	565	Open in IMG/M
3300028811\|Ga0307292_10199835	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	821	Open in IMG/M
3300028828\|Ga0307312_10044691	All Organisms → cellular organisms → Bacteria	2627	Open in IMG/M
3300028884\|Ga0307308_10030130	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	2522	Open in IMG/M
3300028885\|Ga0307304_10163844	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	934	Open in IMG/M
3300031231\|Ga0170824_102875113	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300031474\|Ga0170818_106566409	All Organisms → cellular organisms → Bacteria	1281	Open in IMG/M
3300031474\|Ga0170818_110965058	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300031547\|Ga0310887_10779420	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	599	Open in IMG/M
3300031562\|Ga0310886_10020815	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus → Opitutus sp. ER46	2623	Open in IMG/M
3300031716\|Ga0310813_10811064	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300032421\|Ga0310812_10511596	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	540	Open in IMG/M
3300033412\|Ga0310810_10177431	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2439	Open in IMG/M
3300033412\|Ga0310810_10560015	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1113	Open in IMG/M
3300033412\|Ga0310810_11303981	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300033475\|Ga0310811_11388498	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	542	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.59%
Host-Associated	Host-Associated	14.41%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.18%
Plants	Host-Associated → Plants	14.41%
Aquatic	Environmental → Aquatic	5.41%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.18%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.21%
Sediment	Environmental → Aquatic → Sediment	4.50%
Freshwater	Environmental → Aquatic → Freshwater	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.50%
Loam	Environmental → Terrestrial → Soil → Loam	4.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.70%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	50.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	17.12%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.50%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.60%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.70%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	23.42%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.61%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.70%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.70%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.70%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.70%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.80%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.80%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
3300000596	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001139	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300002090	Soil microbial communities from Manhattan, Kansas, USA - Sample 200um MDA	Environmental	Open in IMG/M
3300002128	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012882	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300022892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S169-409R-5	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025290	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5	Host-Associated	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027552	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02556520	2088090014	Soil	NILLTKTKRVRVQSSKDIPATLDGEIVNLGTSAEINFISRALTVLVPAR
GPICI_00447290	2088090015	Soil	XXXRNIRLTKTKRVDVQSSKDIPATLDGERVNLGRSAEIDFVSRAVTVIVPA
E4A_12178520	2170459003	Grass Soil	QSSKDIPATLDGEKVNLGRSAEIDFVPHALTVLVPAK
F47_04128320	2170459009	Grass Soil	VQSSKDIPGVLDGEKVNLGRSAEINFVSKAVTVLVPASS
KanNP_Total_noBrdU_T14TCDRAFT_10436212	3300000596	Soil	NILLTKTRRVGVQSSKDIPAILDGESVNLGKSAEIDFISNAVKVLVPAK*
JGI10214J12806_100943091	3300000891	Soil	KRVDVQSSKDIPATLDGERVNLGRSAEIDFVSRAVTVIVPAK*
JGI10216J12902_1017287762	3300000956	Soil	MSEYSSHETDQVRVQSSKDIPGILDGEKVNLGRSAEVNFVSKAVTVFVPTSG*
JGI10216J12902_1020178623	3300000956	Soil	KDIPAMLDGERVNLGRSAEIDFVSKAVSVLVPAK*
JGI10220J13317_103512202	3300001139	Soil	KTNQVRVQSSKDIPGILDGEKVNLGRSAEINFVSKAVTVLVPASS*
JGI24806J26614_10201241	3300002090	Soil	LTKTNQVRVQSSKDIPGILDGEKVNLGRSAEINFMSKAVTVLVPASS*
JGI24036J26619_100182492	3300002128	Corn, Switchgrass And Miscanthus Rhizosphere	VRVQSSKDIPGILDGEKVNLGGSAEINFVSKTVTVLVPTSG*
JGIcombinedJ43975_100221263	3300002899	Soil	VLTKTNQVRVQSSKDIPGILDGEKVNLGRSAEINFMSKAVTVLVPASS*
JGIcombinedJ43975_101078521	3300002899	Soil	MARYRNIVLTKTNKVRVQSSKDIPGILDGEKVNLGKSAEISFVSKAVTVLVPASS*
Ga0062589_1009854491	3300004156	Soil	RTPHQAKRVSVQSRKNIPATLDGKNVSPGASVEIDFVSEAVKVLVPAK*
Ga0063356_1001318531	3300004463	Arabidopsis Thaliana Rhizosphere	WRDNRNIVLTKTNQVRVQSSEDIPGILDGEKVNLGRSADINFVSKAVTVLAPCQ*
Ga0063356_1007812371	3300004463	Arabidopsis Thaliana Rhizosphere	LTKTKRLAVQSNNEIPATLDGESVNLGTRAEIDFVSRALTVLVPAK*
Ga0062595_1002930382	3300004479	Soil	KRVTVQSRKDIPAMLDGENVSLGTSAEIDFVSRAVNILVPAN*
Ga0062594_1027258051	3300005093	Soil	WRDDKNILLTKTKRVDVQSSKDIPATLDGERVNLGMSAEIDFVSRALTVLVPSK*
Ga0066688_101364013	3300005178	Soil	MARRQNILLTKTKRVNVQSSKEIPAALDGEKVNLGRSVEIDFVSRALTVLVP
Ga0066684_105144791	3300005179	Soil	DKDILLTKTKRVDIRSGSDMPAILDGERVNLGSTAEINFVSRAVDVIVPGR*
Ga0066671_106115431	3300005184	Soil	RQNILLTKTKRVNVQSSKEIPAALDGEKVNLGRSVEIDFVSRALTVLVPAR*
Ga0066675_103256611	3300005187	Soil	NILLTKTKRVNVQSSNDIPATLDGERVNLGMSAEIDFVPNALTVLVPAK*
Ga0065704_103932712	3300005289	Switchgrass Rhizosphere	TKTKRVDVQSSKDIPATLDGERVNLGRSVEIDFVSRAVTVIVPAK*
Ga0065705_100127134	3300005294	Switchgrass Rhizosphere	WRDNRNIVLTKTNQVRVQSSKDIPGILDGEKVNLGRSAEINFVSKAVTVLVPASS*
Ga0065705_100235206	3300005294	Switchgrass Rhizosphere	TNQVRVQSSKDIPGILDGEKVNLGGSAEINFVSKTVTVLVPTSG*
Ga0065707_100153273	3300005295	Switchgrass Rhizosphere	DNRNIVLTKTNQVRVQSSKDIPGILDGEKVNLGRSAEINFVSKAVTVLVPASS*
Ga0070658_110079392	3300005327	Corn Rhizosphere	KTKRVSVQSSKDIPATLDGEIVSLGTSAEINFVSRALTVLVPAK*
Ga0070683_1023374242	3300005329	Corn Rhizosphere	ILLTKTKRVNVRSSKEIPATLDGEKVNLGRSAEIDFVSRALTVLVPAR*
Ga0070660_1017671102	3300005339	Corn Rhizosphere	RVNVQSIKEIPATLDGEKVNLGRSAEIDFVSRALTVLVPAR*
Ga0070675_1008817801	3300005354	Miscanthus Rhizosphere	LTKAKRVDVQSSTDIHATLDGERVNLGRSAQIDFVSGALTVLVPAK*
Ga0066681_103182611	3300005451	Soil	RTKRVSVESSKDIPAILDGERINLGRSARIEFVSKAVKVIVAGNN*
Ga0066687_100476171	3300005454	Soil	MARRQNILLTKTKRVNVQSSKEIPAALDGEKVNLGRSVEIDFV
Ga0070696_1000493401	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	TKTKRVDIRSGSDMPAILDGERVDLGCSTEINFVSKAVTVLVPASG*
Ga0066652_1014849702	3300006046	Soil	WRDDRNILLTKTKRVDVQSSKDIPATLDGEKVNLGRSAEIDFVSRALTVLVPAK*
Ga0070712_1015698532	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	QSSKDIPAMLDGEIVNLGRSAEINFVSRALTVLVPAK*
Ga0099793_105623001	3300007258	Vadose Zone Soil	KVHLAKTERSAVQSSKDIPATLDGERVTLGRSAEIDFVSGALTVLVPAR*
Ga0066709_1013934141	3300009137	Grasslands Soil	RRQNILLTKTKRVNVQSSKEIPAALDGEKVNLGRSVEIDFVSRALTVLVPAR*
Ga0126380_118056371	3300010043	Tropical Forest Soil	RIVVRSNKEIPSTLDGESVNLGVQAQFDFVSRAVTVLVPAK*
Ga0134086_102049031	3300010323	Grasslands Soil	VTETKRLAVQSSKEIPATLNRENVNLGTRAELDFVSRAITVL
Ga0134065_101172562	3300010326	Grasslands Soil	LTKTKRVNVQSSDVITATLDGERVNLGRSAEIDFVSRALTVLVPAK*
Ga0105239_114252813	3300010375	Corn Rhizosphere	RVNVQSSKEIPATLDGEKVNLGRSAEIDFVSKALTVLAPAR*
Ga0134126_105733431	3300010396	Terrestrial Soil	IRSGSDMPAILDGERVDLGCSTEINFVSKAVTVLVPASG*
Ga0137364_100750291	3300012198	Vadose Zone Soil	SKEIPATLDGEKVNLGRSAEIDFVSRALTVLVPRK*
Ga0137364_101885201	3300012198	Vadose Zone Soil	KEIPATLDGEKVNLGRSAEIDFVSRALTVLVPGR*
Ga0137364_112221811	3300012198	Vadose Zone Soil	TKRVGVQSSKDIPATLDGENVNLGTSAEIDFVSRALTVIVPAK*
Ga0137376_117374341	3300012208	Vadose Zone Soil	RNVLLTKAKRVSVQSRKDIPATLDGENVSLGASAEIDFVSRAVNVLVPVK*
Ga0137377_107057691	3300012211	Vadose Zone Soil	NILLTKTKRIGVQSSKDIPAILDGERVNLGSSAEIDFVSRALTVIVPAK*
Ga0137370_105616831	3300012285	Vadose Zone Soil	RVGVQSSKDIPATLDGENVSLGTSAEIDFVARALTVIVPAK*
Ga0137371_111753742	3300012356	Vadose Zone Soil	RDDRKILLTKTKRLAVQSSKEIPATLDGESVKLGTRAQIDFVSRGITVLVPGK*
Ga0137398_107198632	3300012683	Vadose Zone Soil	DRNILLTKTKRVDVQSSKDIPATLDGERVNLGRSAEIDFVSRALTVLVPAK*
Ga0137397_105600772	3300012685	Vadose Zone Soil	DDRNILLTKTKRVAMQSGKDIPAILDGERVNLGRSAEIAFVSRAVTVIVPAK*
Ga0157304_10129662	3300012882	Soil	RDDRNILLTKTKRVNVQSTKEIPATLDGEKINLDRSAEIDFVSRALTVLVPAR*
Ga0157304_10795893	3300012882	Soil	TKTNQVRVHSSKDIRGILDGEKVNLGTSAEINFVSKAVTVLVPTSG*
Ga0137413_104613981	3300012924	Vadose Zone Soil	NILLTKTKRVDVQSSKDIPATLDGERVDLGRSAEIDFVSRALTVLVPAK*
Ga0137416_103936362	3300012927	Vadose Zone Soil	DRNILLTKTKRVDVQSSKDIPATLDGETVNLGRSAEIDFVSSAVNVIAPAK*
Ga0137407_112319792	3300012930	Vadose Zone Soil	PAMLDGERVNLGRSAEIDFVSRAVNLIVPSRCAETR*
Ga0164303_101633811	3300012957	Soil	LLTKTKRIDVQSSEDIPAMLDGERVNLGRSAEIDFVSSALTVLVPAK*
Ga0164301_110917562	3300012960	Soil	VLLTKTKRIDVQSSEDIPAMLDGERVNLGRSAEIDFVSRALTVLVPAS*
Ga0163162_128972692	3300013306	Switchgrass Rhizosphere	NQVRVQSSKDIPAILDGEKVNLGRRAEINFVSKAVTVLVPASS*
Ga0134078_103807053	3300014157	Grasslands Soil	VLLTKAKRVSVQSRKNIPATLDGENVTLSASAEIDFVSQAVKILVPAK*
Ga0157379_106611423	3300014968	Switchgrass Rhizosphere	LLTKTKRVDIRSGSDMPAILDGERVDLGCSTEINFVSKAVTVLVPASG*
Ga0173480_106896682	3300015200	Soil	VLTKTKQVRVHSSKDIPGILDGEKVNLGRSAEINFVSKAVTVLVPTSG*
Ga0137418_103982672	3300015241	Vadose Zone Soil	KDIPATLDGESINLGTSAEIDFVSRALTVIVSAK*
Ga0137412_103457511	3300015242	Vadose Zone Soil	KDIPATLDGERVNLGRSAEIDFVSRALTVLVPAK*
Ga0137403_114690672	3300015264	Vadose Zone Soil	ILLTKTKRVNVQSSNDIPATLDGEKVNLGRSAEIDFVPRALTVLVPAK*
Ga0132257_1030954061	3300015373	Arabidopsis Rhizosphere	DKNILLTKTKRVDVQSSKEIPATLDGEKVNLGRSAEIVFVSKALTVLVPAS*
Ga0132255_1062817452	3300015374	Arabidopsis Rhizosphere	KEIPATLDGEKVNLGRSAEIVFVSKALTVVVPAS*
Ga0184608_100433921	3300018028	Groundwater Sediment	TKTKRVGVQSSKNIPAILDGEIVNLGRSAQIDFVSRAVHVLVPAK
Ga0184608_100788752	3300018028	Groundwater Sediment	LLTKTKRVALQSSKDIPAILDGERVNLGRSAEINFVSRAVNVLVPAK
Ga0184635_100795531	3300018072	Groundwater Sediment	KWRDDRNILLTKTKRVDVQSSKDIPATLDGEIVNLGTSAEINFVSRALTVLVPAK
Ga0184632_103348321	3300018075	Groundwater Sediment	HSSKDIPATLDGERVNLGRSAEIDFVSRALTVLVPAK
Ga0184609_101694982	3300018076	Groundwater Sediment	VQSSKDIPAILDGEGVNFGRSAEIDFGSRAVDVIVPAKQVF
Ga0066667_114383261	3300018433	Grasslands Soil	LTKTKRVNVQSSKEIPAALDGEKVNLGRSVEIDFVSRALTVLVPAR
Ga0193707_11782652	3300019881	Soil	IPVCAVLDGDKINLGRSAEINFVPKAVTVLVPACR
Ga0193713_11804242	3300019882	Soil	TKTKRVNVQSSKEIPATLDGEKVNLGRSAEIDFVSKALTVLVPAS
Ga0193747_10921201	3300019885	Soil	RDDRHVHLTKTKRLAVQSGKEIPATLDGESVNLGMRAEFDFVSRAVTVLVPAK
Ga0193747_11093771	3300019885	Soil	GKWRNDRNILLTKTKRVDVQSSKDIPATLDGEKVNLGRSVEIDFVSRALTVLVPAK
Ga0193747_11173062	3300019885	Soil	SKDIPATLDGEKVNLGRSAEIDFVSHALTVLVPAK
Ga0193727_11035291	3300019886	Soil	QSSKDIPGILDGEKVNLGRSAEINFVSKAVTVLVPASS
Ga0193727_11173041	3300019886	Soil	TNQVRVQSSKDIPGILDGEKVNLGRSAEINFVSKAVTVLVPASS
Ga0193731_10430241	3300020001	Soil	GRWRDDRNILLTKTKRVGVQSSKDIPATLDGESVSLGKSAEIDFVSRALTVIVPAK
Ga0210381_101797351	3300021078	Groundwater Sediment	KTKRVNVQSSKDIPATLDGEKVNLGRSAEIDFVSHALTVLVPAK
Ga0179596_105632512	3300021086	Vadose Zone Soil	HNENVFLTRTKRVGVQSSKDIPAILDGERVNLGRSAQIDFVSKAIKVIVAGNN
Ga0193719_102571721	3300021344	Soil	LLTKTKRVGVQSSKDIPATLDGESVSLGKSAEIDFVSRALTVIVPAK
Ga0193699_101768742	3300021363	Soil	KIHLTKTKRLAVQSSKGIPATLDGESVNLGMRAEFDFVSRAVTVLVPAK
Ga0247753_10279931	3300022892	Soil	NILLTKTKRVNVQSTKEIPATLDGEKINLGRSAEIDFVSRALTVLVPAR
Ga0179589_105895461	3300024288	Vadose Zone Soil	DRKVHLAKTEGSAVQSSKDIPAMLDGEKVNLGRNAEIDFVSKALTVLVPSK
Ga0207673_10107471	3300025290	Corn, Switchgrass And Miscanthus Rhizosphere	IVLAKTKRVSVQSSKDIPATLDGEIVSLGTSAEINFVSRALTVLVPAK
Ga0207682_105883062	3300025893	Miscanthus Rhizosphere	NKDILLTKTKRVDIRSGSDMPAILDGERVDLGCSTEINFVSKAVTVLVPASG
Ga0207662_112889841	3300025918	Switchgrass Rhizosphere	KDILLTKTKRVDIRSGSDMPAILDGERVDLGCSTEINFVSKAVTVLVPASG
Ga0207706_100441741	3300025933	Corn Rhizosphere	EDTSHQTNQVRVQSSKDIPGILDGEKVNLGGSAEINFVSKTVTVLVPTSG
Ga0207712_107789951	3300025961	Switchgrass Rhizosphere	SKDIPAILDGERVNLGRSAEIDFVSRAVNVIVAAK
Ga0209577_1000371611	3300026552	Soil	MARRQNILLTKTKRVNVQSSKEIPAALDGEKVNLGRSVEIDFVSRALTVLVPAR
Ga0209982_10628452	3300027552	Arabidopsis Thaliana Rhizosphere	VDVQSKTDIPATLDGERVNLGRSAEIDFVSRAVTVIVPAK
Ga0137415_113948042	3300028536	Vadose Zone Soil	RVNVQSSKDIPATLDGETVNLGRSAEIDFVSSAVNVIAPAK
Ga0307282_105422362	3300028784	Soil	KRVRVQSTKDIPATLDGESVSLGTSVEIDFVSRALAVLVPAK
Ga0307292_101998351	3300028811	Soil	RVNVQSTKEIPATLDGEKVNLGRSAEIDFVSKALTVLVPAT
Ga0307312_100446913	3300028828	Soil	VGVQSGKDIPATLDGESINLGTSAEIDFVSRALTVIVPAK
Ga0307308_100301301	3300028884	Soil	VQSGKDIPATLDGESINLGTSAEIDFVSRALTVIVPAK
Ga0307304_101638442	3300028885	Soil	KWRNNRNIVLTKTNQVRVQSSKDIPGILDGEKVNLGRSAEINFVSKAVTVLVPASS
Ga0170824_1028751131	3300031231	Forest Soil	VQSSKDIPATLDGEKVNLGMSAEIDFVSRALTVLVPSK
Ga0170818_1065664091	3300031474	Forest Soil	DVQSSKDIPATLDGEVVNLGTSAEINFVSRALTVLVPAK
Ga0170818_1109650582	3300031474	Forest Soil	VQSNKDIPATLDGEVVNLGTSAEINFVSRALTVLVPAK
Ga0310887_107794202	3300031547	Soil	RNDIPAILDGEKINLGGSAEITFVPKAVTVLVPACR
Ga0310886_100208151	3300031562	Soil	KWRDDRNILLTKAKRVDVQSSTDIPATLDGERVNLGRSAQIDFVSGALTVLVPAK
Ga0310813_108110641	3300031716	Soil	KNILLTKTKRVSVQSSKDIPATLDGEIVNLGTSAEINFVSRALTVLVPAK
Ga0310812_105115961	3300032421	Soil	SSKDIPGILDGEKVNLGRSAEINFVSKAVTVLVPASS
Ga0310810_101774312	3300033412	Soil	LTKTNQVRVQSSKDIPGILDGEKVNLGRSAEINFVSKAVTVLVPAGD
Ga0310810_105600151	3300033412	Soil	KTKRVDVQSSKEIPATLDGEKVNLGRSAEIVFVSKALTVLVPAS
Ga0310810_113039811	3300033412	Soil	LTKTNQVRVQSSKDIPGILDGEKVNLGRSAEINFVSKAVTVLVPASS
Ga0310811_113884982	3300033475	Soil	LTKTKRVNVQSSKEIPATLDGEKVNLGRSAEIDFVSRALTVLVPAK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F085975

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences