NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F085974

Metagenome / Metatranscriptome Family F085974

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F085974
Family Type Metagenome / Metatranscriptome
Number of Sequences 111
Average Sequence Length 48 residues
Representative Sequence MHGIAVTLLTEDKERLTVLQQRLESTQMGRNVFGHVGFPASPTDAILRQI
Number of Associated Samples 100
Number of Associated Scaffolds 111

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 96.97 %
% of genes near scaffold ends (potentially truncated) 29.73 %
% of genes from short scaffolds (< 2000 bps) 25.23 %
Associated GOLD sequencing projects 98
AlphaFold2 3D model prediction Yes
3D model pTM-score0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (74.775 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(9.910 % of family members)
Environment Ontology (ENVO) Unclassified
(20.721 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(54.955 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 51.28%    β-sheet: 0.00%    Coil/Unstructured: 48.72%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.40
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 111 Family Scaffolds
PF07238PilZ 24.32
PF05977MFS_3 14.41
PF02163Peptidase_M50 1.80
PF02687FtsX 0.90
PF06564CBP_BcsQ 0.90
PF01520Amidase_3 0.90
PF13560HTH_31 0.90
PF02368Big_2 0.90
PF01872RibD_C 0.90
PF02082Rrf2 0.90

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 111 Family Scaffolds
COG2814Predicted arabinose efflux permease AraJ, MFS familyCarbohydrate transport and metabolism [G] 14.41
COG0262Dihydrofolate reductaseCoenzyme transport and metabolism [H] 0.90
COG0640DNA-binding transcriptional regulator, ArsR familyTranscription [K] 0.90
COG0860N-acetylmuramoyl-L-alanine amidaseCell wall/membrane/envelope biogenesis [M] 0.90
COG1192ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQCell cycle control, cell division, chromosome partitioning [D] 0.90
COG1414DNA-binding transcriptional regulator, IclR familyTranscription [K] 0.90
COG1725DNA-binding transcriptional regulator YhcF, GntR familyTranscription [K] 0.90
COG1959DNA-binding transcriptional regulator, IscR familyTranscription [K] 0.90
COG1985Pyrimidine reductase, riboflavin biosynthesisCoenzyme transport and metabolism [H] 0.90
COG2186DNA-binding transcriptional regulator, FadR familyTranscription [K] 0.90
COG2188DNA-binding transcriptional regulator, GntR familyTranscription [K] 0.90
COG2378Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domainsTranscription [K] 0.90
COG2524Predicted transcriptional regulator, contains C-terminal CBS domainsTranscription [K] 0.90


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A74.77 %
All OrganismsrootAll Organisms25.23 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000567|JGI12270J11330_10025011All Organisms → cellular organisms → Bacteria3604Open in IMG/M
3300005466|Ga0070685_11302916All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium555Open in IMG/M
3300005543|Ga0070672_102085417All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium511Open in IMG/M
3300005994|Ga0066789_10080110All Organisms → cellular organisms → Bacteria1412Open in IMG/M
3300006162|Ga0075030_100840358All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium725Open in IMG/M
3300006176|Ga0070765_100411068All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1264Open in IMG/M
3300006358|Ga0068871_101856925All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium572Open in IMG/M
3300006954|Ga0079219_10648064All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium788Open in IMG/M
3300009521|Ga0116222_1386735Not Available608Open in IMG/M
3300012929|Ga0137404_12101550All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium527Open in IMG/M
3300017933|Ga0187801_10350870All Organisms → cellular organisms → Bacteria607Open in IMG/M
3300018468|Ga0066662_11842124Not Available633Open in IMG/M
3300020579|Ga0210407_10055741All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2955Open in IMG/M
3300021088|Ga0210404_10359295All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium809Open in IMG/M
3300021405|Ga0210387_10258341All Organisms → cellular organisms → Bacteria1525Open in IMG/M
3300021478|Ga0210402_10060955All Organisms → cellular organisms → Bacteria → Acidobacteria3316Open in IMG/M
3300021560|Ga0126371_11333809Not Available850Open in IMG/M
3300021560|Ga0126371_12446418All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium632Open in IMG/M
3300025939|Ga0207665_10111166All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1926Open in IMG/M
3300026310|Ga0209239_1342341All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium522Open in IMG/M
3300026322|Ga0209687_1101223All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium935Open in IMG/M
3300026331|Ga0209267_1017768All Organisms → cellular organisms → Bacteria3635Open in IMG/M
3300026557|Ga0179587_10344263All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium966Open in IMG/M
3300027862|Ga0209701_10099383All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis1819Open in IMG/M
3300027884|Ga0209275_10230970All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1009Open in IMG/M
3300027965|Ga0209062_1023160All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3674Open in IMG/M
3300028536|Ga0137415_10855058All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes720Open in IMG/M
3300030879|Ga0265765_1023006All Organisms → cellular organisms → Bacteria763Open in IMG/M
3300031040|Ga0265754_1012547All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium697Open in IMG/M
3300031090|Ga0265760_10217966All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium650Open in IMG/M
3300031231|Ga0170824_106545114All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1133Open in IMG/M
3300031833|Ga0310917_10935005Not Available583Open in IMG/M
3300032783|Ga0335079_11667023Not Available624Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil9.91%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil8.11%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment7.21%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil7.21%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil7.21%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds6.31%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil6.31%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil6.31%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.41%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil4.50%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil3.60%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.60%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.70%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.80%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.80%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil1.80%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.90%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland0.90%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.90%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.90%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.90%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.90%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.90%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.90%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.90%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.90%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.90%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.90%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.90%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.90%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.90%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.90%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.90%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.90%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000567Peat soil microbial communities from Weissenstadt, Germany - SII-2010EnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005466Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300005950Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047EnvironmentalOpen in IMG/M
3300005994Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049EnvironmentalOpen in IMG/M
3300006047Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009520Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaGEnvironmentalOpen in IMG/M
3300009521Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaGEnvironmentalOpen in IMG/M
3300009524Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaGEnvironmentalOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300009759Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300017924Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5EnvironmentalOpen in IMG/M
3300017933Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1EnvironmentalOpen in IMG/M
3300017934Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018001Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300020002Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1EnvironmentalOpen in IMG/M
3300020021Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022733Soil microbial communities from Bohemian Forest, Czech Republic ? CSU3EnvironmentalOpen in IMG/M
3300025320Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026310Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)EnvironmentalOpen in IMG/M
3300026331Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)EnvironmentalOpen in IMG/M
3300026342Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027641Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027662Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027667Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300027915Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300027965Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300030879Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031040Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031090Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031094Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12270J11330_1002501113300000567Peatlands SoilMHGIAVTLLTEDKERLTVLQQRLESTQMGRNVFGHVGFPASATDAILRQIQDVAAEV
JGI12053J15887_1063551223300001661Forest SoilMQGVAVTLLTEDKERLSALQHRLESTQSGRIVFAHVGFPSSATDPSLRQ
JGIcombinedJ26739_10099747223300002245Forest SoilMQGIAVTLLTEDKERLSILQTRLEGTHLGSNVFSHVGFPSGPTDTIL
C688J35102_11863783813300002568SoilMHGIAVAILTEDRERLAALQHRVDSTQMGRTVFGHVGFPSGPADPILRQ
JGIcombinedJ51221_1016465213300003505Forest SoilMHGIAVTLLTEDKERLMVLQQRLESTQMGRNVFGHVGFPASPTD
Ga0062387_10000587313300004091Bog Forest SoilMLGIAVTLLTEQKERLPVLQQRMETTQLGHVVFGHVGFPSSPTDAILRQIQDVR
Ga0066683_1011541543300005172SoilMHGIAVTLLTEDKERVSVLQHRLETTNMGRNVFTHVGFPASATDP
Ga0066679_1097965613300005176SoilMQGVAVTLLTEDRERLSILQHRLEGTGMGRNVFSHVGFPTSPTDPVL
Ga0070685_1130291613300005466Switchgrass RhizosphereMQGVAVTLLTEDRERLSVLQHRLEVTGMGRNVFSHVGFPSSPTDPVLRQIQDVRAE
Ga0070699_10155164513300005518Corn, Switchgrass And Miscanthus RhizosphereMHGIAVTLLTEDKERVSVLQHRLEATHMGRNVFTHVGFPASAIDP
Ga0070672_10208541713300005543Miscanthus RhizosphereMQGVAVTLLTEDRERLSVLQHRLEATGMGRNVFSHVGFPTSPTDPVLRQIQDVRAE
Ga0066692_1078979613300005555SoilMHGIAVTLLTEDKERVSVLQHRLETTNIGRNVFTHVGFPASATDPIV
Ga0066707_1002184213300005556SoilMHGIAVTLLTEDKERVSVLQHRLEATHMGRNVFTHVGFPASAIDPVVRQIQDVRT
Ga0068858_10016547713300005842Switchgrass RhizosphereMQGVAVTLLTEDRERLTVLQQRLEGTGMGRNVFSHVGFPTS
Ga0070766_1125347023300005921SoilMHGIAVTLLTEDKERLMVLQQRLESTQMGRNVFGHVGFPASPTDAILRQ
Ga0066787_1007201523300005950SoilMQGVAVTLLTEDKERLSALQHRLEGTQTGRIVFAHVG
Ga0066789_1008011023300005994SoilMQGLAVTFLTEDKERQASLQHRVESTQSGRNVFSHVGFPTSTTDPILRQLQDVRTEV
Ga0075024_10062478113300006047WatershedsMQGVAVTLLTEDRERLSVLQHRLEGTGMGRNVFSHVGFPVSPTDPVLRQIQ
Ga0075029_10043851113300006052WatershedsMHGIAVTLLAQDKERLTVLQNRLESTQMGRNVFAHAGFPTGPTDAV
Ga0075017_10003381813300006059WatershedsMQGVAVTLLSEDRERLSVLQHSLEGTGMGRNVFSHAGF
Ga0075030_10084035823300006162WatershedsMHGIAVTLLTEDKERLTVLQQRLEDTQMGRNVFGHVGFPASPTDAILRQIQDVRAD
Ga0070712_10157646113300006175Corn, Switchgrass And Miscanthus RhizosphereMHGVAIALLAEDKERLSVLQHRLDGTQMGRNVFSQQGFPT
Ga0070765_10041106813300006176SoilMHGIAVSLLTEDRERLGLLQHRLEATQMGRNVFSHVGFPAVATDAILRQIQDVRSEV
Ga0068871_10185692523300006358Miscanthus RhizosphereMHGIAVTILSEDRERLSVLQHRLEVTQMARNVFSNGAFPSVATDPILRQIQDVRAE
Ga0079219_1064806423300006954Agricultural SoilMHGIAVTVLTEEKERLALLQHRLEATQMARTVFTHVGFPASATDPLLRQIQDVRSDI
Ga0066710_10377967913300009012Grasslands SoilMHGIAVTLLSEDRERLAILQQRVEGTQMGRTVFAHLGFPASPSDSVLRQIQD
Ga0099830_1031629723300009088Vadose Zone SoilMQGVAVTLLTEDRERLSVLQHRLEGTGMGRNVFSHPGFPASPTDPVLR
Ga0105240_1053084133300009093Corn RhizosphereMQGVAVTLLTEDRERLTVLQQRLEGTGMGRNVFSHVG
Ga0105245_1010772213300009098Miscanthus RhizosphereMQGVAVTLLTEDRERLTVLQQRLERTGMGRNVFSHVG
Ga0116214_142556523300009520Peatlands SoilMHGIAVTLLTEDKERLTVLQQRLESTQMGRNVFGHVGFPASPTDAILRQI
Ga0116222_138673513300009521Peatlands SoilMHGIAVTLLTEDKERLQALQQRLENAQIGRNVFGHVGFPASQTDPLLRQIQDVHAEV
Ga0116225_149204913300009524Peatlands SoilMHGIAVTLLTEDKERLTVLQQRLESTQMGRNVFGHVGFPASPTDA
Ga0116216_1019753133300009698Peatlands SoilMHGIAVTLLTEDKERLGVLQQRMESTQMGRNVFGHVGFPGSATDVILRQIQDV
Ga0116101_114797323300009759PeatlandMHGIAVTLLTEDKERLTVLQQRLESTQMGRNVFGHVGFPASPTDAIL
Ga0126378_1310273213300010361Tropical Forest SoilMHGIAVTVLSEDRERLAVLQHRLESTQMARNVFSHVGFPAAATDPVLRQIQDV
Ga0126381_10019596943300010376Tropical Forest SoilMHGIAVALLSEDRERLGVLQNRVESTSLGRVVFTHTGFPASPTDAILRQI
Ga0126381_10493057113300010376Tropical Forest SoilMHGVAVTLLSEDTERLSILQHRLEATQLGRNVFSY
Ga0134124_1182853613300010397Terrestrial SoilMQGVAVTLLTEDRERLTVLQQRLEGTGMGRNVFSHVGFPTSP
Ga0126383_1269143213300010398Tropical Forest SoilMHGIAVTLLTEDKERLVVLQQRLESTQMGRNVFGHVGFPATPTDPILRQIQDVRA
Ga0150983_1618777223300011120Forest SoilMHGIAVTLLTEDKERLMVLQQRLESTQMGRNVFGHVGFPVSPTDSILRQIQDVRRK*
Ga0137380_1069726823300012206Vadose Zone SoilMHGIAVTLLTEDKERVSVLQHRLETTNIGRNVFTHVGFPASA
Ga0137419_1163747313300012925Vadose Zone SoilMHGIAVTLLTEDKERVSVLQHRLEATHMGRNVFTHVG
Ga0137404_1210155023300012929Vadose Zone SoilMQGVAVTLLTEDRERLSVLQHRLEGTGMGRNVFSHVGFPANGTDPVLRQMQDA
Ga0157374_1038112833300013296Miscanthus RhizosphereMQGVAVTLLTEDRERLSVLQHRLEGTGMGRNVFGHVG
Ga0163162_1013742713300013306Switchgrass RhizosphereMQGVAVTLLTEDRERLTVLQQRLEGTGMGRNVFSHVGFPTSPTDPVLRQMQ
Ga0157380_1260330913300014326Switchgrass RhizosphereMQGVAVTLLTEDRERLSVLQHRLEVTGMGRNVFSHVGFPSSPTDPVLRQ
Ga0187820_103405323300017924Freshwater SedimentMQGVAVTLLTEDRERLSVLQHRLEGTGMGRNVFSHVGFPTSPTDPVLRQI
Ga0187801_1007471213300017933Freshwater SedimentMHGIAVTLLTEDKERLTVLQQRLESTQMGRNVFGHVGFPATPT
Ga0187801_1035087013300017933Freshwater SedimentMHGIAVTLLTEDKERLAVLQQRMETAQMGRNVFSHVGFPASATDAIVRQIQDVRTE
Ga0187803_1019752613300017934Freshwater SedimentMHGIAVTLLTEDKERLGALQQRMESSQMGRNVFGHVGFPASATDAILRQI
Ga0187819_1013923413300017943Freshwater SedimentMHGIAVTLLTEDKERLGVLQQRMESTQMGRNVFGHVGFPGSATDVIL
Ga0187819_1015692013300017943Freshwater SedimentMHGIAVTLLTEDKERLTVLQQRLESTQMGRNVFAHVGFPATPTDAIL
Ga0187819_1056900423300017943Freshwater SedimentMHGIAVTLLAEDKERLAVLQQRMESAQMGRNVFSHVGFPASATDAILRQV
Ga0187778_1074494513300017961Tropical PeatlandMHGIAVTLLAEDKERLTLLQHRLESTQLGRNFFAHLGFPANAT
Ga0187782_1014614133300017975Tropical PeatlandMHGIAVTILADDKERLALLQQRLETTQIGRSVFAHLGFPTGQTDPVLRQIQD
Ga0187815_1033990423300018001Freshwater SedimentMHGIAVTLLTEDKERLAVLQQHLEGTNVGRNVFGHVGFPA
Ga0066662_1184212423300018468Grasslands SoilMHGIAVTLLSEDRERLAILQQRVEGTQMGRTVFAHLGFPASPTDSVLRQIQDAGVHVVGM
Ga0066669_1038100913300018482Grasslands SoilMHGVAVTLLTEENERLSVLQHRLDGTQMGRNVFSHVGFPAGPTDP
Ga0066669_1148350413300018482Grasslands SoilMHGVAVTLLSEDKERLAVLQHRLDGTQMGRNVFSHQGFPT
Ga0193730_119465613300020002SoilMQGVAVTLLTEDRERLSVLQHRLEGTGMGRNVFSHVG
Ga0193726_119645413300020021SoilMQGVAVTLLTEDKERLSALQHRLEGTQTGRIVFAHV
Ga0210407_1005574113300020579SoilMHGIAVTLLTEDKERLTVLQQRLESTQMGRNVFGHVGFPGSPTDSILRQIQDVRADV
Ga0210407_1084084913300020579SoilMHGIAVTLLTEDKERLQALQQRLENAQIGRNVFGHVGFPASQTDPL
Ga0210401_1074517613300020583SoilMHGIAVTLLTEDKERLTVLQQRLESTQMGRNVFGHVG
Ga0210401_1151181913300020583SoilMHGIAVTLLAQDKERLTVLQNRLESTKMGRNVFAHPGFPSGPT
Ga0210404_1035929513300021088SoilMQGVAVTLLTEDRERLSVLQHRLEGTGMGRNVFSHLGFPTSPTDPVLRQMQDV
Ga0210388_1013900113300021181SoilMHGIAVTLLTEDKERLTVLQQRLESTQMGRNVFGHVGFPASPTDAILRQL
Ga0210387_1025834133300021405SoilMHGIAVTLLTEDKERLMVLQQRLESTQMGRNVFGHVGFPASPTDAILRQIQDVHADVV
Ga0210383_1039798713300021407SoilMHGIAVTLLAQDKERLTVLQNRLESTKMGRNVFAHPGFPSGP
Ga0210394_1107803613300021420SoilMHGIAVTLLTEDKERLMVLQQRLESTQMGRNVFGHVGFPASPTDAILRQI
Ga0210402_1006095513300021478SoilMQGVAVTLLTEDRERLSVLQHRLEGTGMGRNVFSHVGFPTSPTDPVLRQIQDVR
Ga0126371_1133380923300021560Tropical Forest SoilMHGIAVTVLAEDKERLALLQQRLETSQIGRSVFAHIGFPAGQSDPVLRQIQDLK
Ga0126371_1244641823300021560Tropical Forest SoilMHGIAVTVLSEDRERLAVLQHRLESTQMARNVFSHVGFPAAATDPVLRQIQDVHA
Ga0224562_100991323300022733SoilMHGIAVTLLTEDKERLTVLQQRLESTQMGRNVFGHVGF
Ga0209171_1014441233300025320Iron-Sulfur Acid SpringMHGIAVTLLTEDKERLTVLQQRLESTQMGRNVFGHVGFPTSPTD
Ga0207646_1063205823300025922Corn, Switchgrass And Miscanthus RhizosphereMQGVAVTLLTEDRERLPVLQHRLEGTGMGRNVFSHVGFPASPTDP
Ga0207665_1011116633300025939Corn, Switchgrass And Miscanthus RhizosphereMQGVAVTLLTEDKERLPVLQHRLEGTGMGRNVFSHVGFPSSPTDPVLRQMQDAHTDVV
Ga0209239_134234113300026310Grasslands SoilMHGVAVTLLTEENERLSVLQHRLDGTQMGRNVFSHVGFPAGPTDPVLRQIQDVRSE
Ga0209687_110122313300026322SoilMHGIAIALVTEEKEMLAFLQHRLEATQMTRTVFTHVGFPTAATDPVLRQIQDVRS
Ga0209267_101776813300026331SoilMHGVAAAILSEDRERLAVLQSGLENTNLGRNIYSCVGFPAAATDPSLRQIQD
Ga0209057_118846913300026342SoilMHGVAVTLLTEENERLSVLQHRLDGTQMGRNVFSHVGFPAGPTD
Ga0179587_1034426313300026557Vadose Zone SoilMQGVAVTLLTEDRERLSVLQHRLEGTGMGRNVFSHVGFPANGTDPVLRQMQDAGT
Ga0208827_102144233300027641Peatlands SoilMHGIAVTLLTEDKERLTVLQQRLESTQMGRNVFGH
Ga0208565_101735943300027662Peatlands SoilMHGIAVTLLTEDKERLTVLQQRLESTQMGRNVFGHVGFP
Ga0209009_101461113300027667Forest SoilMQGVAVTLLSEDRERLSVLQHRLEGTGMGRNVFSH
Ga0209180_1017491813300027846Vadose Zone SoilMHGVAIALLAEDKERLSVLQHRLDGTQMGRNVFSQQGFPTSATDPILRQ
Ga0209701_1009938333300027862Vadose Zone SoilMQGVAVTLLTEDRERLSVLQHRLEGTGMGRNVFSHVGFPTSPTDPVLRQMQDVRTE
Ga0209275_1000193613300027884SoilMHGIAVTLLTEDKERLMVLQQRLESTQMGRNVFGH
Ga0209275_1023097033300027884SoilMHGIAVTLLTEDKERLMVLQQRLESTQMGRNVFGHVGFPTSPTDAILRQIQDVHADV
Ga0209415_1004386753300027905Peatlands SoilMHGIAVTLLTEDKERLQALQQRLENAQIGRNVFGHV
Ga0209415_1058047813300027905Peatlands SoilMHGIAVTLLTEDKERLTVLQQRLESTQMGRNVFGHVGFPASPTDAILRQIQ
Ga0209006_1144907013300027908Forest SoilMHGIAVTLLTEDKERLTVLQQRLESTQMGRNVFGHVGFPGSP
Ga0209583_1014407613300027910WatershedsMQGIAVTLLTEDKERLSTLQHRLEGTQMGRNVFSHVGFPASATDAILRQIQ
Ga0209583_1059696913300027910WatershedsMHGIAVTLLTEDRERLTALQHRVESTQLGRIVFTHVGFPSGPTDP
Ga0209069_1068507813300027915WatershedsMQGVAVTLLTEDRERLSVLQHRLEGTGMGRNVFSHVGFPTSPTDPVL
Ga0209062_102316053300027965Surface SoilMQGIAVTVLSEDKERLSLLQQRLEATQLVRIVFAHPGFPASPTDAVLRQIQDVRSE
Ga0209526_1016958033300028047Forest SoilMQGIAVTLLTEDRERLPVLQHSLDGTGMGRSVFSHVGFPASPTDPILRQVQD
Ga0137415_1085505833300028536Vadose Zone SoilMQGVAVTLLTEDRERLSVLQHRLEGTGMGRNVFSHLGFPTSPTDPVLRQMQDVRTE
Ga0265765_102300613300030879SoilMHGIAVTLLTEDKERLTVLQQRLESTQMGRNVFGHVGFPASPTDAILRQLQDVSSDVV
Ga0265754_101254713300031040SoilMHGIAVTLLTEDKERLMVLQQRLESTQMGRNVFGHVGFPASPTDAILRQIQDVHADV
Ga0265760_1021796623300031090SoilMHGIAVTLLTEDKERLTVLQQRLESTQMGRNVFGHVGFPSSPTDAILRQIQDVRAD
Ga0308199_111774913300031094SoilMNGIAVTLLTEDKERVSVLQHRLETTNMGRNVFTHVGFPASATDPIVRQIQD
Ga0170824_10654511423300031231Forest SoilMQGVAVTLLTEDRERLSVLQHRLEGTGMGRNVFSHLGFPTSPTDPVLRQMQDVR
Ga0310686_11949598213300031708SoilMHGIAVTLLTEDKERLQALQQRLENAQIGRNVFGHVGFPASQTDPLLRQIQDV
Ga0310917_1093500513300031833SoilMHGIAVTVLAEDKERLALLQQRLETSQIGRSVFAHVGFPVGQSDPVLRQIQDLKAE
Ga0306923_1255231513300031910SoilMHGIAVSLLSEERERLSVLQHRLESTQMARIVFSHVGFPAAATG
Ga0306921_1186436723300031912SoilMHGIAVSLLSEERERLSVLQHRLESTQMARIVFSHVGFPAAATDPVLRQVQDV
Ga0307472_10064901813300032205Hardwood Forest SoilMHGIAVTLLTEDKERLTVLQQRLESTQMGRNVFGHVGFPVSPTD
Ga0335079_1166702313300032783SoilMHGIAVTLLTEDKERLAVLQQRLEGTQIGRNVFGHVGFPASATDSILREIQNVGAE
Ga0335080_1196133023300032828SoilMHGIAVTLLTEDKERLTVLQHRLESTQIGRNLFAHVGF
Ga0335070_1002791163300032829SoilMHGIAVTLLTYEKERLAALQQRLELTQIGRNVFSHAG


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