Metagenome / Metatranscriptome Family F085962

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085962
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	56 residues
Representative Sequence	MKETAVFYKPHVKKSAWVGAENFPYAFSESLRSFSRREFPAFKTREEALAWLAKD
Number of Associated Samples	91
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	24.32 %
% of genes near scaffold ends (potentially truncated)	73.87 %
% of genes from short scaffolds (< 2000 bps)	78.38 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.991 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (20.721 % of family members)
Environment Ontology (ENVO)	Unclassified (26.126 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.252 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.55% β-sheet: 0.00% Coil/Unstructured: 61.45%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF00485	PRK	9.01
PF00072	Response_reg	3.60
PF02348	CTP_transf_3	2.70
PF00916	Sulfate_transp	2.70
PF13407	Peripla_BP_4	2.70
PF13302	Acetyltransf_3	1.80
PF07238	PilZ	1.80
PF11154	DUF2934	0.90
PF04295	GD_AH_C	0.90
PF00563	EAL	0.90
PF01695	IstB_IS21	0.90
PF01381	HTH_3	0.90
PF00158	Sigma54_activat	0.90
PF00330	Aconitase	0.90
PF00437	T2SSE	0.90
PF04519	Bactofilin	0.90
PF00905	Transpeptidase	0.90
PF12974	Phosphonate-bd	0.90
PF00202	Aminotran_3	0.90
PF00171	Aldedh	0.90
PF12867	DinB_2	0.90
PF10417	1-cysPrx_C	0.90
PF00665	rve	0.90
PF01609	DDE_Tnp_1	0.90
PF03544	TonB_C	0.90
PF13180	PDZ_2	0.90
PF14659	Phage_int_SAM_3	0.90
PF00440	TetR_N	0.90
PF14417	MEDS	0.90
PF03524	CagX	0.90
PF03551	PadR	0.90
PF01564	Spermine_synth	0.90
PF13426	PAS_9	0.90
PF11752	DUF3309	0.90
PF17200	sCache_2	0.90
PF00756	Esterase	0.90
PF07603	DUF1566	0.90
PF02585	PIG-L	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	2.70
COG1083	CMP-N-acetylneuraminic acid synthetase, NeuA/PseF family	Cell wall/membrane/envelope biogenesis [M]	2.70
COG1212	CMP-2-keto-3-deoxyoctulosonic acid synthetase	Cell wall/membrane/envelope biogenesis [M]	2.70
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	2.70
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	2.70
COG1861	Spore coat polysaccharide biosynthesis protein SpsF, cytidylyltransferase family	Cell wall/membrane/envelope biogenesis [M]	2.70
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.90
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.90
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.90
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.90
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.90
COG3504	Type IV secretory pathway, VirB9 components	Intracellular trafficking, secretion, and vesicular transport [U]	0.90
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.90
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.90
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.90
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.90
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.90
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.90
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.90
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.90
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.90
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.90
COG2721	Altronate dehydratase	Carbohydrate transport and metabolism [G]	0.90
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.90
COG2120	N-acetylglucosaminyl deacetylase, LmbE family	Carbohydrate transport and metabolism [G]	0.90
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.90
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.90
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.90
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	0.90
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.90
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.90
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.99 %
Unclassified	root	N/A	9.01 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.99 %
Unclassified	root	N/A	9.01 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.99 %
Unclassified	root	N/A	9.01 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	70.27 %
Unclassified	root	N/A	9.01 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.90 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	51.35 %
Unclassified	root	N/A	9.01 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.41 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.90 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	51.35 %
Unclassified	root	N/A	9.01 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.60 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	51.35 %
Unclassified	root	N/A	9.01 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.70 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	51.35 %
Unclassified	root	N/A	9.01 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.90 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	51.35 %
Unclassified	root	N/A	9.01 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	0.90 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10686261	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300002245\|JGIcombinedJ26739_100784306	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	833	Open in IMG/M
3300004082\|Ga0062384_100789268	All Organisms → cellular organisms → Bacteria → Proteobacteria	662	Open in IMG/M
3300004092\|Ga0062389_100120304	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2388	Open in IMG/M
3300004092\|Ga0062389_102640369	Not Available	668	Open in IMG/M
3300004092\|Ga0062389_104761186	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300005167\|Ga0066672_10741482	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300005178\|Ga0066688_10304023	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1029	Open in IMG/M
3300005541\|Ga0070733_10496280	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	816	Open in IMG/M
3300005591\|Ga0070761_10365801	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300005591\|Ga0070761_11107558	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	504	Open in IMG/M
3300005602\|Ga0070762_10054252	All Organisms → cellular organisms → Bacteria	2218	Open in IMG/M
3300005602\|Ga0070762_10893568	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300005921\|Ga0070766_10053813	All Organisms → cellular organisms → Bacteria	2270	Open in IMG/M
3300006028\|Ga0070717_10720486	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300006102\|Ga0075015_100282078	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	909	Open in IMG/M
3300006176\|Ga0070765_100029305	All Organisms → cellular organisms → Bacteria	4258	Open in IMG/M
3300006176\|Ga0070765_100863892	All Organisms → cellular organisms → Bacteria → Acidobacteria	855	Open in IMG/M
3300006893\|Ga0073928_10007859	All Organisms → cellular organisms → Bacteria → Acidobacteria	13626	Open in IMG/M
3300009012\|Ga0066710_101044485	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1262	Open in IMG/M
3300009038\|Ga0099829_10140634	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1918	Open in IMG/M
3300009038\|Ga0099829_11451537	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300009038\|Ga0099829_11540207	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300009088\|Ga0099830_10256415	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1385	Open in IMG/M
3300009088\|Ga0099830_11257449	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300009088\|Ga0099830_11333945	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	596	Open in IMG/M
3300009088\|Ga0099830_11598919	All Organisms → cellular organisms → Bacteria → Acidobacteria	543	Open in IMG/M
3300009089\|Ga0099828_10039122	All Organisms → cellular organisms → Bacteria → Acidobacteria	3874	Open in IMG/M
3300009137\|Ga0066709_100040606	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5105	Open in IMG/M
3300010859\|Ga0126352_1052530	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653	Open in IMG/M
3300011120\|Ga0150983_15912954	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1130	Open in IMG/M
3300011271\|Ga0137393_10034406	All Organisms → cellular organisms → Bacteria	3865	Open in IMG/M
3300012096\|Ga0137389_10436207	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1121	Open in IMG/M
3300012189\|Ga0137388_11460835	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300012200\|Ga0137382_11106437	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300012208\|Ga0137376_10147456	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2023	Open in IMG/M
3300012349\|Ga0137387_10225753	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1347	Open in IMG/M
3300012362\|Ga0137361_11225095	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	674	Open in IMG/M
3300012683\|Ga0137398_10652508	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	730	Open in IMG/M
3300012917\|Ga0137395_10071712	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2239	Open in IMG/M
3300012917\|Ga0137395_10355885	All Organisms → cellular organisms → Bacteria → Acidobacteria	1043	Open in IMG/M
3300014056\|Ga0120125_1014934	All Organisms → cellular organisms → Bacteria → Acidobacteria	1620	Open in IMG/M
3300014169\|Ga0181531_10084239	Not Available	1886	Open in IMG/M
3300014201\|Ga0181537_10050624	Not Available	2816	Open in IMG/M
3300014489\|Ga0182018_10009487	All Organisms → cellular organisms → Bacteria	7129	Open in IMG/M
3300014489\|Ga0182018_10043837	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2768	Open in IMG/M
3300014495\|Ga0182015_10006326	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11938	Open in IMG/M
3300014495\|Ga0182015_10562611	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	725	Open in IMG/M
3300014499\|Ga0182012_10826353	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	586	Open in IMG/M
3300014501\|Ga0182024_10002559	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	44856	Open in IMG/M
3300014657\|Ga0181522_11013012	All Organisms → cellular organisms → Bacteria → Acidobacteria	515	Open in IMG/M
3300015089\|Ga0167643_1072645	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300015245\|Ga0137409_10332291	Not Available	1329	Open in IMG/M
3300018040\|Ga0187862_10319362	All Organisms → cellular organisms → Bacteria → Acidobacteria	975	Open in IMG/M
3300018468\|Ga0066662_12353379	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300019786\|Ga0182025_1348185	All Organisms → cellular organisms → Bacteria → Acidobacteria	1309	Open in IMG/M
3300019888\|Ga0193751_1153641	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	822	Open in IMG/M
3300020579\|Ga0210407_11240656	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
3300020583\|Ga0210401_10002991	All Organisms → cellular organisms → Bacteria	18289	Open in IMG/M
3300021168\|Ga0210406_11054764	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300021170\|Ga0210400_10676756	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	849	Open in IMG/M
3300021170\|Ga0210400_11029948	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	668	Open in IMG/M
3300021181\|Ga0210388_10174372	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1875	Open in IMG/M
3300021181\|Ga0210388_11379571	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	592	Open in IMG/M
3300021401\|Ga0210393_10838088	All Organisms → cellular organisms → Bacteria → Acidobacteria	747	Open in IMG/M
3300021403\|Ga0210397_10574735	Not Available	859	Open in IMG/M
3300021404\|Ga0210389_10146495	All Organisms → cellular organisms → Bacteria	1830	Open in IMG/M
3300021407\|Ga0210383_10949126	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	731	Open in IMG/M
3300021407\|Ga0210383_11414150	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300021420\|Ga0210394_11344145	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	609	Open in IMG/M
3300021433\|Ga0210391_10369004	Not Available	1126	Open in IMG/M
3300021474\|Ga0210390_10886029	Not Available	735	Open in IMG/M
3300021861\|Ga0213853_10437110	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	978	Open in IMG/M
3300022557\|Ga0212123_10011424	All Organisms → cellular organisms → Bacteria → Acidobacteria	12209	Open in IMG/M
3300024330\|Ga0137417_1361254	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4512	Open in IMG/M
3300026551\|Ga0209648_10236016	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1366	Open in IMG/M
3300026555\|Ga0179593_1083392	All Organisms → cellular organisms → Bacteria	1824	Open in IMG/M
3300027370\|Ga0209010_1052371	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	695	Open in IMG/M
3300027619\|Ga0209330_1000993	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	9360	Open in IMG/M
3300027648\|Ga0209420_1065228	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1069	Open in IMG/M
3300027684\|Ga0209626_1112849	Not Available	708	Open in IMG/M
3300027701\|Ga0209447_10105684	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	774	Open in IMG/M
3300027829\|Ga0209773_10246559	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	746	Open in IMG/M
3300027842\|Ga0209580_10521246	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300027862\|Ga0209701_10174475	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1298	Open in IMG/M
3300027895\|Ga0209624_10438735	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	870	Open in IMG/M
3300027903\|Ga0209488_10177101	All Organisms → cellular organisms → Bacteria	1610	Open in IMG/M
3300028798\|Ga0302222_10104243	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1128	Open in IMG/M
3300028863\|Ga0302218_10073876	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1067	Open in IMG/M
3300028871\|Ga0302230_10282136	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	643	Open in IMG/M
3300029944\|Ga0311352_11154047	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	590	Open in IMG/M
3300029944\|Ga0311352_11280422	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300029951\|Ga0311371_11530285	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	740	Open in IMG/M
3300029999\|Ga0311339_10100899	All Organisms → cellular organisms → Bacteria	3563	Open in IMG/M
3300030053\|Ga0302177_10305412	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	848	Open in IMG/M
3300030058\|Ga0302179_10028669	All Organisms → cellular organisms → Bacteria	2611	Open in IMG/M
3300030509\|Ga0302183_10009953	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4079	Open in IMG/M
3300031028\|Ga0302180_10052456	Not Available	2458	Open in IMG/M
3300031057\|Ga0170834_103458082	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300031057\|Ga0170834_107144589	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	911	Open in IMG/M
3300031090\|Ga0265760_10053283	All Organisms → cellular organisms → Bacteria → Acidobacteria	1220	Open in IMG/M
3300031234\|Ga0302325_11478814	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	877	Open in IMG/M
3300031525\|Ga0302326_13484940	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300031715\|Ga0307476_10683138	Not Available	760	Open in IMG/M
3300031823\|Ga0307478_10467148	All Organisms → cellular organisms → Bacteria → Acidobacteria	1050	Open in IMG/M
3300031962\|Ga0307479_10397472	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1363	Open in IMG/M
3300031962\|Ga0307479_11050634	All Organisms → cellular organisms → Bacteria → Acidobacteria	782	Open in IMG/M
3300032180\|Ga0307471_102299613	All Organisms → cellular organisms → Bacteria → Acidobacteria	680	Open in IMG/M
3300032180\|Ga0307471_103089775	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	590	Open in IMG/M
3300032205\|Ga0307472_100921422	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300032955\|Ga0335076_10049241	All Organisms → cellular organisms → Bacteria	4185	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.39%
Aquatic	Environmental → Aquatic	12.61%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.68%
Peat	Environmental → Terrestrial → Peat	11.71%
Freshwater	Environmental → Aquatic → Freshwater	9.91%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.80%
Sediment	Environmental → Aquatic → Sediment	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.05%
Loam	Environmental → Terrestrial → Soil → Loam	14.41%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	11.71%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.01%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.21%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.80%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.13%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.62%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.51%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	11.71%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	9.01%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	6.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.41%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.90%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.90%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	20.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.51%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	11.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.21%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.31%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.31%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.41%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.60%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	3.60%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.70%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.80%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.80%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.80%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.90%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.90%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.90%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.90%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.90%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010859	Boreal forest soil eukaryotic communities from Alaska, USA - C5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300014056	Permafrost microbial communities from Nunavut, Canada - A20_5cm_0M	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300015089	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8A, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027619	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental	Open in IMG/M
3300028863	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_1	Environmental	Open in IMG/M
3300028871	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_1	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_106862611	3300001593	Forest Soil	MKETAVFDKSYVKKSAWTGEEDFCRELSESLGEFSRREFLVFETREKALAWLAKDSM*
JGIcombinedJ26739_1007843062	3300002245	Forest Soil	NQEGLRAMKECAVFDKLYIKKSTWVGAENLPHAFEKDLKAFSRRDFPSFKTREEALAWLAKV*
Ga0062384_1007892681	3300004082	Bog Forest Soil	VFDKPYIKKTAWVGTESFPKDLSQSVSNFSRRQFPAFKSREDALDWLVQD*
Ga0062389_1001203042	3300004092	Bog Forest Soil	MQQTAVFDKLYIKRSAFVGTENFPPAFSENLSGFSRRKFPAFKTRNEALTWLTKE*
Ga0062389_1026403693	3300004092	Bog Forest Soil	PYVKKSALLGTEHFPPQFTENLSSFSRRVFHTFKSREEALAWLVKD*
Ga0062389_1047611862	3300004092	Bog Forest Soil	DEEAFRAMKETAVFDKPFVKKSAWVGAENLEAFSEKVRNFSRRDFPAFETREEALTWLVKDS*
Ga0066672_107414821	3300005167	Soil	AMKESAVFDKPHVKKSAWVGAENFPHAFSESLRSFSRREFPAFKTREEALAWLAKDE*
Ga0066688_103040231	3300005178	Soil	TGASFDEEAIRTMKETAVFDKPYIKKSAWVGAENLPELFSENVKSFSRREFPAFKTREEALAWS*
Ga0070733_104962803	3300005541	Surface Soil	LKESAVFDKPYVRKSAWIGTENLPQVFADAMKNFSRREFPAFKTRQEALDWLAAD*
Ga0070761_103658012	3300005591	Soil	SFDEEAIRVMQQTAVFDKLYIKRSAFVGTENFPPAFSENLSHFSRREFPAFKTRDEALAWLAKD*
Ga0070761_111075582	3300005591	Soil	FDKLYVKKSAWTGAESFPQAFSENVKSFSRRQFPVFETRKEALSWLTKD*
Ga0070762_100542523	3300005602	Soil	MKETAVFYKPHVKKSAWVGAENFPYAFSESLRSFSRREFPAFKTREEALAWLAKD*
Ga0070762_108935682	3300005602	Soil	VFDKPYVKKSALTGKAKVPPMFAENMIEDLSKFARREFPVFESREEALAWLVKD*
Ga0070766_100538131	3300005921	Soil	FDKPYVKKSAWAGTEGVPHVFSANLSSFSRREFPAFKTREEALAWLVKD*
Ga0070717_107204861	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VFDKPHVKKSAWVGAENFPHAFSESLRSFSRREFPAFKTREEALAWLTKDE*
Ga0075015_1002820781	3300006102	Watersheds	AVFDKPHVKKSAWVGAQLFPHEFSRSLSYFSRREFPAFKTRKEALAWLVKD*
Ga0070765_1000293055	3300006176	Soil	KETAVFDKPFIKKSAWVGATYLPNAFAKNLKSFSRRDFPAFETRDEALSWLVKE*
Ga0070765_1008638922	3300006176	Soil	MKETAVFDKPYVKKSAWAGAVSLPEELSQDLSSFSGRKFFAFKTRQEALGWLVKD*
Ga0073928_1000785911	3300006893	Iron-Sulfur Acid Spring	MKEAAVFDKPYVKKSAWVGAKNFPKVISESMKSFSRREFPSFETREEALTWLVKD*
Ga0066710_1010444852	3300009012	Grasslands Soil	MKETAVFDKPYIKKSAWVGAENLPELFSENVKSFSRREFPAFKTREEALAWS
Ga0099829_101406342	3300009038	Vadose Zone Soil	SFDKEAIQTMKESAVFDKPHVKKSAWVGAENFPQAFSESLRSFSRREFPAFKTREEALAWLAKDE*
Ga0099829_114515373	3300009038	Vadose Zone Soil	ESAVFDKPYIKKSAWVGAESFPEACRDSLKSFSRRDFPTFKTRQEALDWLVED*
Ga0099829_115402071	3300009038	Vadose Zone Soil	IQTMKESAVFDKPHVKKSAWVGAENFPHAFSESLRSFSRREFPAFKTREEALAWLAKDE*
Ga0099830_102564153	3300009088	Vadose Zone Soil	FDKPHVKKSAWVGAENFPHAFSESLRSFSRREFPAFKTREEALAWLAKD*
Ga0099830_112574491	3300009088	Vadose Zone Soil	ESAVFDKPHVKKSAWVGAENFPHAFSENLRSFSRREFPAFKTREEALAWLAKDE*
Ga0099830_113339451	3300009088	Vadose Zone Soil	LSDYTGASFDKEAIQTMKESAVFDKPHVKKSAWVGAENFPHAFSESLRSFSRREFPAFKTREEALAWLAKDE*
Ga0099830_115989191	3300009088	Vadose Zone Soil	MKETAVFDKPYIKKSAWVGAENLPELFSENVKSFSCREFPAFKTREEALAWLVKD*
Ga0099828_100391224	3300009089	Vadose Zone Soil	DKEAIQTMKESAVFDKPHVKKSAWVGAENFPHAFSESLRSFSRREFPAFKTREEALAWLAKDE*
Ga0066709_1000406063	3300009137	Grasslands Soil	MKETAVFDKPYIKKSAWVGAENLPELFSENVKSFSRREFPAFKTREEALAWS*
Ga0126352_10525301	3300010859	Boreal Forest Soil	MKEAAVFDKPFIKKTAWVGAENLPDVFSESIRSFSRREFPSFETREEALAWLVKD*
Ga0150983_159129541	3300011120	Forest Soil	GASFDEEAVRAMKESAVFDKPYIKKSAWVGAESFPKAFKDDLKSFSRREFPAFKNREEALNSLVED*
Ga0137393_100344061	3300011271	Vadose Zone Soil	PYVKRSAWVGAENFPELFFEGVRNFSRREFPAFKTREEALVWLTQD*
Ga0137389_104362071	3300012096	Vadose Zone Soil	KEAIQTMKESAVFDKPHVKKSAWVGAENFPHAFSESLRSFSRREFPAFKTREEALAWLAKD*
Ga0137388_114608352	3300012189	Vadose Zone Soil	SAVFDKPHVKKSAWMGAENFPHAFSENLRSFSRREFPAFKTREEALAWLAKDE*
Ga0137382_111064371	3300012200	Vadose Zone Soil	MKETAVFDKPYIKKSAWVGAENLPELFSENVKSFSRREFPAFKTREE
Ga0137376_101474567	3300012208	Vadose Zone Soil	ASFDEEAIRTMKETAVFDKPYIKKSAWVGAENLPELFSENVKSFSRREFPAFKTREEALAWS*
Ga0137387_102257533	3300012349	Vadose Zone Soil	FDKPYVKKSAWVGAETFPQLFSESVRSFSRREFPAFKTREEALAWLVKD*
Ga0137361_112250951	3300012362	Vadose Zone Soil	KEAAVFDNPYVKKSAWVGAETFPQLFSESVRSFSRRECPAFKTREEALAWLVKD*
Ga0137398_106525082	3300012683	Vadose Zone Soil	MKVSAVFEKPHVRKSAWVGAENFPHAFADSLRSFARREFPAFKTRDEALAWLAK
Ga0137395_100717123	3300012917	Vadose Zone Soil	MKEAAVFDKPYVKKSAWVGAETFPQLFSESVRSFSRHEFPAFKTREEALAWLVKD*
Ga0137395_103558852	3300012917	Vadose Zone Soil	MKETAVFDKPYNKKSAWVGAENLPELFSENVKSFSRREFPAFKTREEALACLVKD*
Ga0120125_10149341	3300014056	Permafrost	MKESAVFDKPYVRKSAWTGTESLPMLFSEELGSFSGREFPVFENRREALAWLAKD*
Ga0181531_100842394	3300014169	Bog	YVKKSAWIGTENFLRGLCENLGTFSRREFHIFQTREAALAWLAKD*
Ga0181537_100506245	3300014201	Bog	FDKPFVKKSAFVGTENFPPEVSENLSTFSRRGFPAFKTREEALAWLAKD*
Ga0182018_1000948712	3300014489	Palsa	MQETAVFDKPYVKKSAWAGAEYLPQGLSQSLSKFSRREFSAFKTREEALAWLAKD*
Ga0182018_100438373	3300014489	Palsa	MKETAVFDRPYVKKSAWMGTECFPQVFSENVSNFSRREFPVFETRKEALAWLAKD*
Ga0182015_1000632614	3300014495	Palsa	ALCQKKRAWVGADNFPQEYSKSLSSFSRREFPAFKTREDALAWLAKD*
Ga0182015_105626112	3300014495	Palsa	GASFDLEAIRVMKETAVFDRPYVKKSAWMGTECFPQVFSENVSNFSRREFPVFETRKEALAWLAKD*
Ga0182012_108263531	3300014499	Bog	LRVMKETAVFDKPYVKKSAWMGTKSLPILLLEVLSAFSRRDFPTFETREQALAWLVKD*
Ga0182024_1000255934	3300014501	Permafrost	MKETAVFDKPYVKKSAWTGAENFPRVFSENLRSFSRREFPVFETREEALAWLVKD*
Ga0181522_110130121	3300014657	Bog	KPFVRKSAFVGTENFPHGLSEKLSNFSRREFPAFKTRDEALAWLAKD*
Ga0167643_10726451	3300015089	Glacier Forefield Soil	IRVMKEAAVFDKPFVKKSAWAGAENLPPELSQSISKFSGREFFAFRSRLEALAWLVKD*
Ga0137409_103322912	3300015245	Vadose Zone Soil	VSAVFDKPYIKKSAWLGAKAVPQEFQEEIKSFSGRELPAFKTRQEAVTWLVQE*
Ga0187862_103193622	3300018040	Peatland	MRVMKEATVFDKPYIKKTAWLGAEYIPSEFVDMLKSFSRREFPAFKSREEALAWLVKD
Ga0066662_123533791	3300018468	Grasslands Soil	MSAFAVAPFAKAAIQAMKASAVCDKSHVRISAWVGAENFPHAFSESLRSFSRREFPAFKTREEALEWLAKDE
Ga0182025_13481854	3300019786	Permafrost	MKETAVFDKPYVKKSAWTGAENFPRVFSENLRSFSRREFPVFETREEALAWLVKD
Ga0193751_11536411	3300019888	Soil	MKESAVFDKPHVKKSAWVGAENFPDEYSKSLRSFSLREFPAFSTREEALAWLVKD
Ga0210407_112406561	3300020579	Soil	ESAVFDKPYVKRSAWVGAENFPELFSESVRNFSRREFPAFKTREEALAWLTKD
Ga0210401_1000299115	3300020583	Soil	MAESAVFDKPYIKKSAWVGAENLPPVFERKLKAISRRQFTTFKTRLDALSWLVED
Ga0210406_110547642	3300021168	Soil	SFDQEAIRVMKETAVFDKPYVKKSAWAGSENLPQELLQSLSSFSRREFFIFKTRAEALAWLAKD
Ga0210400_106767562	3300021170	Soil	YVKRSAWVGAENFPELFFEGVRNFSRREFPAFKTREEALAWLTKD
Ga0210400_110299482	3300021170	Soil	RAMKESAVFDKPYIKKSVWVGAESFPKAFKDDLKSFSRREFPAFKNRQEALNSLVED
Ga0210388_101743724	3300021181	Soil	MKETAVFYKPHVKKSAWVGAENFPYAFSESLRSFSRREFPAFKTREEALAWLAKD
Ga0210388_113795712	3300021181	Soil	TGAAFDLEAVRVMKETAVFNKPHVRKSAWMGTASLPQEFAKSLSSFSRREFGVFETRKEALAWLWKD
Ga0210393_108380882	3300021401	Soil	VFDKLYVKKSAWTGAERLPPGVSADLRNFSRREFPVFDTREEALAWLVKD
Ga0210397_105747353	3300021403	Soil	MKETAVFDKPYVKKSALAGTEGVPDVFSANLSSFSRREFPAFKTREEAVAWLVKD
Ga0210389_101464954	3300021404	Soil	EAVRVMKETAVFDKPYVKKSAWVACESLPQGFAENLMNFSRRDFPIFKTREEALAWLVKD
Ga0210383_109491261	3300021407	Soil	MKESAVFDKPHVRKSAWMGAENFPHAFSETLRNFSRREFPAFKTREEALAWLTKDE
Ga0210383_114141501	3300021407	Soil	MKETAVFDKPYVRKSAFVGVESFPGQFHEKLKSFSRREFPAFGTREEALDWLVRD
Ga0210394_113441451	3300021420	Soil	SEALRVLKESAVFNKPYIKKSAWVGAETFPPAFLQDLGEFSRRELPTFKSREKALLWLIQ
Ga0210391_103690041	3300021433	Soil	KETAVFDKPYVKKSAWAGTEGVPHVFSANLSSFSRREFPAFKTREEALAWLVKD
Ga0210390_108860291	3300021474	Soil	AVFDKLYVKKSAWTGTENLPRGLAESLGTFSRRDFHVFETRGEALEWLAKD
Ga0213853_104371101	3300021861	Watersheds	DAIRAMKESAVFDKPHVKKSAWVGAENFPHEFSRSLSNFSRREFPAFKSREEALAWLVKD
Ga0212123_100114249	3300022557	Iron-Sulfur Acid Spring	MKEAAVFDKPYVKKSAWVGAKNFPKVISESMKSFSRREFPSFETREEALTWLVKD
Ga0137417_13612548	3300024330	Vadose Zone Soil	MRESAVFDEPYVKRSAWVGAENFPESLSESVRNFSRREVPNPTSR
Ga0209648_102360161	3300026551	Grasslands Soil	MKETAVFDKPYIKKSAWVGAENPPELFSENVKSFSRREFPAFKTREEALAWLVKD
Ga0179593_10833923	3300026555	Vadose Zone Soil	MKESAVFDKPHVKKSAWMGAENFSSCVLGEACVASPAASFPAFKTREEALAWLAKDE
Ga0209010_10523712	3300027370	Forest Soil	ETAVFDKPYVKKSAWTGTASLPQEFAKSLSSFSRREFGVFETRKEALAWLWKD
Ga0209330_10009937	3300027619	Forest Soil	MRVMKETAVFDKPYVKKSAWAGAENLPHVFSENLSSFSGREFPAFKTREQALAWLAKD
Ga0209420_10652281	3300027648	Forest Soil	TGALFDAEAIRVMQQTAVFDKPHVKKSAFVGTESFPQGFFEDLRTFSRREFPAFKTRDEALAWLAKD
Ga0209626_11128491	3300027684	Forest Soil	DKPYVKRSAWVGAENFPELFSESVRNFSRREFPAFKTREEAVAWLVKD
Ga0209447_101056841	3300027701	Bog Forest Soil	VLDKPYVKKSAWAGTQNFPHVFSANLSSFSRREFPAFKTREEALAWLAKD
Ga0209773_102465591	3300027829	Bog Forest Soil	SGASFDVEAIRAMKETAVFNKPHIKKSAWIGAENFPQVFADDMKSFSRREFPAFKTRQEALECLVAD
Ga0209580_105212461	3300027842	Surface Soil	KESAVFDKPYIKKSAWVGAENLPKDFEQNLKDYSRRQFPIFKSYEEALTWLIED
Ga0209701_101744751	3300027862	Vadose Zone Soil	VFDKPHVKKSAWVGAENFPHAFSESLRSFSRREFPAFKTREEALAWLAKD
Ga0209624_104387352	3300027895	Forest Soil	ETAVFDKPYVRKSAWVGADNFPKAFSEDLRKFSRRVFTIFETREEALAWLVKD
Ga0209488_101771013	3300027903	Vadose Zone Soil	FDKPYVKRSAWVGAENFPELFFEGVRNFSRREFPAFKTREEALEWLTKD
Ga0302222_101042433	3300028798	Palsa	FGFHGASFDAEAIRVLKETAVFDKPFVRKSAFIGTENLPQGFVETLKSFSRRDFPTFETRDEALAWLVKD
Ga0302218_100738762	3300028863	Palsa	MKETAVFDRPYVKKSAWMGTERFPQVFSENVSNFSRREFPVFETRKEALAWLAKD
Ga0302230_102821361	3300028871	Palsa	RALKETAVFDKPHVRKSALVGTDSLPPEFAENLRTFSRREFPVFKTREEALAWLVKD
Ga0311352_111540471	3300029944	Palsa	QTAVFDKMYVKKSAWVGTENFPPEFSENLRLFSRREFPAFKTRNEALAWLAKE
Ga0311352_112804221	3300029944	Palsa	GASFDLEAIRVMKETAVFDRPYVKKSAWMGTERFPQVFSENVSNFSRREFPVFETRKEALAWLAKD
Ga0311371_115302851	3300029951	Palsa	IRVMKETAVFDRPYVKKSAWMGTERFPQVFSENVSNFSRREFPVFETRKEALAWLAKD
Ga0311339_101008994	3300029999	Palsa	DAEGIRVFKETAAFDKPFVRKSAFVGTENFPHGLSEKLSNFSRREFPAFKTRDEALAWLAKD
Ga0302177_103054121	3300030053	Palsa	NPEAIRALKETAVFDKPHVRKSALVGTDSLPPEFAENLRTFSRREFPVFKTREEALAWLVKD
Ga0302179_100286691	3300030058	Palsa	VFDKMYVKKSAWVGTENFPPEFSENLRLFSRREFPAFKTRNEALAWLAKE
Ga0302183_100099536	3300030509	Palsa	FDKPFVRKSAFVGTENFPHGLSEKLSNFSRREFPAFKTRDEALAWLAKD
Ga0302180_100524561	3300031028	Palsa	FLNEEALRAMKETAVFDKPYVKKSALVGTENFPPHLIENLTSFSRRVFLAFESHEEALAWLVKG
Ga0170834_1034580822	3300031057	Forest Soil	ASFDKEAIQAMKESAVFDKPHVKKSAWMGAENFPHAFSENLRSFSRREFPAFKTREEALAWLAKDE
Ga0170834_1071445894	3300031057	Forest Soil	LSDYTGASFDKEAIQAMKVSAVFEKSHVRKSAWVGAENFPHAFADSLRSFSRREFPAFKTRDEALEWLAKD
Ga0265760_100532832	3300031090	Soil	MKETAVFDKPYVKKSAWTGKAKVPPKFAENLVENMSKFARREFPVFESREEALAWLVKD
Ga0302325_114788142	3300031234	Palsa	FDQEAMRVIKETAVFDKPYVKKSAWAGAENFPPLFFENLSTFSGREFTVFKTREEALAWLAKD
Ga0302326_134849401	3300031525	Palsa	TAVFDKPYVRKSAFVGTENLIQGFVENLQSFSRREFPAFKTRNEALAWLAED
Ga0307476_106831381	3300031715	Hardwood Forest Soil	IKKSAWVGAENLKAFSEEMRNFSRRDFPAFETREEALVWLAKE
Ga0307478_104671481	3300031823	Hardwood Forest Soil	MKETAVFDKLYVKKSAWTGTENLPRELAESLGTFSRRDFHVFETRGEALEWLAKD
Ga0307479_103974722	3300031962	Hardwood Forest Soil	VLILSDFTGASFDEEAVRAMKESAVFDKPYIKKSAWVGAESFSEAFRDNLRSFSRREFPAFKNRQEALDSLVED
Ga0307479_110506342	3300031962	Hardwood Forest Soil	KEAIQVMKEAAVFDKPHVKKSAWVGAENFPHAFLETLRSFSRRDFPAFKTREEALAWLAKDE
Ga0307471_1022996131	3300032180	Hardwood Forest Soil	ETAVFDKPYIKKSAWVGAENLPELFSENVKSFSRREFPAFKTREEALAWLVKD
Ga0307471_1030897751	3300032180	Hardwood Forest Soil	IDVEAIRAMKESAVFDKPFIKRSAWVGAENFPQVLYENLKSFSRREFPIFKTREDALSWLVKA
Ga0307472_1009214223	3300032205	Hardwood Forest Soil	SFDREAIQAMKESAVFDKPHVKKSARVGAEHFPHAFSESLRSFSRREFPAFKTREEALAWLTKD
Ga0335076_100492414	3300032955	Soil	MKESAVFDKPYVKKSAWVGADSLPEEYQKSIRSFSRREFPRFKNRQEALDWLAKD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085962

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences