Metagenome / Metatranscriptome Family F085959

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085959
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	64 residues
Representative Sequence	VPRNNEQKEANESEIVFDREVWCAIRYLDPESESDRRKGDIAAAIAVLAIVCVLCTVIFYLHQL
Number of Associated Samples	77
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	87.88 %
% of genes near scaffold ends (potentially truncated)	15.32 %
% of genes from short scaffolds (< 2000 bps)	62.16 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.865 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (33.333 % of family members)
Environment Ontology (ENVO)	Unclassified (39.640 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.144 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.96% β-sheet: 0.00% Coil/Unstructured: 38.04%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF13533	Biotin_lipoyl_2	11.71
PF07813	LTXXQ	7.21
PF00873	ACR_tran	4.50
PF00158	Sigma54_activat	3.60
PF13185	GAF_2	3.60
PF02321	OEP	2.70
PF06782	UPF0236	0.90
PF13302	Acetyltransf_3	0.90
PF02954	HTH_8	0.90
PF08327	AHSA1	0.90
PF13492	GAF_3	0.90
PF13365	Trypsin_2	0.90
PF13581	HATPase_c_2	0.90
PF04397	LytTR	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	28.83
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	5.41

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.86 %
Unclassified	root	N/A	35.14 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.86 %
Unclassified	root	N/A	35.14 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.86 %
Unclassified	root	N/A	35.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	26.13 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	3.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	15.32 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6.31 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3.60 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.70 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.32 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	5.41 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	3.60 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
Betaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.32 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.41 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.60 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.70 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.32 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.41 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.60 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.70 %
Candidatus Accumulibacter phosphatis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter phosphatis	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.32 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.41 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.60 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	2.70 %
Candidatus Accumulibacter phosphatis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter phosphatis	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000546\|LJNas_1000072	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	14088	Open in IMG/M
3300001471\|JGI12712J15308_10169441	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300002245\|JGIcombinedJ26739_100042393	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4107	Open in IMG/M
3300002245\|JGIcombinedJ26739_100060170	All Organisms → cellular organisms → Bacteria → Acidobacteria	3480	Open in IMG/M
3300002245\|JGIcombinedJ26739_101028810	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300002917\|JGI25616J43925_10025246	All Organisms → cellular organisms → Bacteria	2636	Open in IMG/M
3300005602\|Ga0070762_10514893	Not Available	786	Open in IMG/M
3300005602\|Ga0070762_10644333	Not Available	707	Open in IMG/M
3300005602\|Ga0070762_10656341	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	700	Open in IMG/M
3300005610\|Ga0070763_10067817	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1737	Open in IMG/M
3300005712\|Ga0070764_10625074	Not Available	658	Open in IMG/M
3300006028\|Ga0070717_11837239	Not Available	547	Open in IMG/M
3300006176\|Ga0070765_100050424	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3393	Open in IMG/M
3300006893\|Ga0073928_10003270	All Organisms → cellular organisms → Bacteria	25886	Open in IMG/M
3300006893\|Ga0073928_10009510	All Organisms → cellular organisms → Bacteria	11812	Open in IMG/M
3300006893\|Ga0073928_10579392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter phosphatis	795	Open in IMG/M
3300007258\|Ga0099793_10449331	Not Available	637	Open in IMG/M
3300007788\|Ga0099795_10071225	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1312	Open in IMG/M
3300009143\|Ga0099792_10477443	Not Available	777	Open in IMG/M
3300011269\|Ga0137392_10038697	All Organisms → cellular organisms → Bacteria	3517	Open in IMG/M
3300011270\|Ga0137391_10049249	All Organisms → cellular organisms → Bacteria	3591	Open in IMG/M
3300012203\|Ga0137399_10059064	All Organisms → cellular organisms → Bacteria	2826	Open in IMG/M
3300012203\|Ga0137399_11419763	Not Available	580	Open in IMG/M
3300012205\|Ga0137362_11162683	Not Available	655	Open in IMG/M
3300012582\|Ga0137358_10100881	All Organisms → cellular organisms → Bacteria	1954	Open in IMG/M
3300012683\|Ga0137398_10249056	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1183	Open in IMG/M
3300012683\|Ga0137398_10370467	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	972	Open in IMG/M
3300012685\|Ga0137397_10078359	All Organisms → cellular organisms → Bacteria	2401	Open in IMG/M
3300012923\|Ga0137359_10226683	Not Available	1668	Open in IMG/M
3300012925\|Ga0137419_10020241	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3869	Open in IMG/M
3300012927\|Ga0137416_10240163	All Organisms → cellular organisms → Bacteria	1475	Open in IMG/M
3300012927\|Ga0137416_10529431	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1018	Open in IMG/M
3300012927\|Ga0137416_11156171	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	696	Open in IMG/M
3300014495\|Ga0182015_10106820	All Organisms → cellular organisms → Bacteria	1938	Open in IMG/M
3300015054\|Ga0137420_1066651	All Organisms → cellular organisms → Bacteria	1767	Open in IMG/M
3300015054\|Ga0137420_1085957	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	781	Open in IMG/M
3300019887\|Ga0193729_1078249	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1294	Open in IMG/M
3300019887\|Ga0193729_1123077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	964	Open in IMG/M
3300019888\|Ga0193751_1004546	All Organisms → cellular organisms → Bacteria → Acidobacteria	7912	Open in IMG/M
3300019890\|Ga0193728_1248676	Not Available	713	Open in IMG/M
3300020170\|Ga0179594_10091493	Not Available	1084	Open in IMG/M
3300020579\|Ga0210407_10109686	All Organisms → cellular organisms → Bacteria	2103	Open in IMG/M
3300020579\|Ga0210407_10407183	All Organisms → cellular organisms → Bacteria	1064	Open in IMG/M
3300020579\|Ga0210407_11362653	Not Available	528	Open in IMG/M
3300020583\|Ga0210401_10340217	All Organisms → cellular organisms → Bacteria	1362	Open in IMG/M
3300020583\|Ga0210401_11584971	Not Available	512	Open in IMG/M
3300021168\|Ga0210406_10136806	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2062	Open in IMG/M
3300021171\|Ga0210405_10597198	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	860	Open in IMG/M
3300021180\|Ga0210396_10002193	All Organisms → cellular organisms → Bacteria	20130	Open in IMG/M
3300021180\|Ga0210396_11243440	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300021401\|Ga0210393_10004126	All Organisms → cellular organisms → Bacteria	11522	Open in IMG/M
3300021401\|Ga0210393_10435907	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1069	Open in IMG/M
3300021432\|Ga0210384_10475711	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300021474\|Ga0210390_10945105	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300022557\|Ga0212123_10010261	All Organisms → cellular organisms → Bacteria	13286	Open in IMG/M
3300022557\|Ga0212123_10074886	All Organisms → cellular organisms → Bacteria	2894	Open in IMG/M
3300022557\|Ga0212123_10112106	All Organisms → cellular organisms → Bacteria	2194	Open in IMG/M
3300023259\|Ga0224551_1066839	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300024049\|Ga0233359_1030561	Not Available	619	Open in IMG/M
3300024288\|Ga0179589_10222412	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	832	Open in IMG/M
3300026446\|Ga0257178_1056720	Not Available	517	Open in IMG/M
3300026467\|Ga0257154_1001943	All Organisms → cellular organisms → Bacteria	2445	Open in IMG/M
3300026481\|Ga0257155_1047762	Not Available	665	Open in IMG/M
3300026489\|Ga0257160_1010838	All Organisms → cellular organisms → Bacteria	1308	Open in IMG/M
3300026499\|Ga0257181_1034000	Not Available	809	Open in IMG/M
3300026514\|Ga0257168_1035962	Not Available	1068	Open in IMG/M
3300026514\|Ga0257168_1040332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1013	Open in IMG/M
3300026514\|Ga0257168_1043439	Not Available	979	Open in IMG/M
3300026557\|Ga0179587_10294208	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1045	Open in IMG/M
3300027439\|Ga0209332_1020193	All Organisms → cellular organisms → Bacteria	1291	Open in IMG/M
3300027545\|Ga0209008_1002417	All Organisms → cellular organisms → Bacteria	4492	Open in IMG/M
3300027575\|Ga0209525_1141734	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300027583\|Ga0209527_1043270	Not Available	1014	Open in IMG/M
3300027619\|Ga0209330_1000776	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	11460	Open in IMG/M
3300027633\|Ga0208988_1086859	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	782	Open in IMG/M
3300027681\|Ga0208991_1030071	All Organisms → cellular organisms → Bacteria	1645	Open in IMG/M
3300027681\|Ga0208991_1149195	Not Available	691	Open in IMG/M
3300027738\|Ga0208989_10154803	Not Available	769	Open in IMG/M
3300027884\|Ga0209275_10225117	All Organisms → cellular organisms → Bacteria	1022	Open in IMG/M
3300027903\|Ga0209488_10057474	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2870	Open in IMG/M
3300027903\|Ga0209488_10701735	Not Available	725	Open in IMG/M
3300027908\|Ga0209006_10293794	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1388	Open in IMG/M
3300028536\|Ga0137415_10060454	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3655	Open in IMG/M
3300028536\|Ga0137415_10246890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1594	Open in IMG/M
3300028906\|Ga0308309_11116804	Not Available	681	Open in IMG/M
3300030991\|Ga0073994_10020084	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	769	Open in IMG/M
3300031090\|Ga0265760_10044254	All Organisms → cellular organisms → Bacteria	1332	Open in IMG/M
3300031708\|Ga0310686_102417949	All Organisms → cellular organisms → Bacteria	6188	Open in IMG/M
3300031708\|Ga0310686_103363689	Not Available	537	Open in IMG/M
3300031715\|Ga0307476_10000165	All Organisms → cellular organisms → Bacteria → Acidobacteria	64791	Open in IMG/M
3300031715\|Ga0307476_10001907	All Organisms → cellular organisms → Bacteria → Acidobacteria	12565	Open in IMG/M
3300031718\|Ga0307474_10000109	All Organisms → cellular organisms → Bacteria → Acidobacteria	59533	Open in IMG/M
3300031718\|Ga0307474_10007120	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8071	Open in IMG/M
3300031718\|Ga0307474_10263387	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1322	Open in IMG/M
3300031718\|Ga0307474_10478127	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	975	Open in IMG/M
3300031823\|Ga0307478_10394913	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1145	Open in IMG/M
3300031962\|Ga0307479_11628288	Not Available	600	Open in IMG/M
3300032174\|Ga0307470_10073149	All Organisms → cellular organisms → Bacteria	1859	Open in IMG/M
3300032180\|Ga0307471_102692373	Not Available	631	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.10%
Host-Associated	Host-Associated	0.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.69%
Aquatic	Environmental → Aquatic	5.41%
Plants	Host-Associated → Plants	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.79%
Thermal Springs	Environmental → Aquatic → Thermal Springs	5.41%
Peat	Environmental → Terrestrial → Peat	0.90%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.17%
Loam	Environmental → Terrestrial → Soil → Loam	20.72%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	5.41%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.54%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	29.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	19.82%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	5.41%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.90%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	33.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	12.61%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	9.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.21%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	7.21%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	5.41%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.90%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.90%
Quercus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000546	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN_Illumina_Assembled	Host-Associated	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300023259	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24	Environmental	Open in IMG/M
3300024049	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-P30	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300026446	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-B	Environmental	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027439	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027575	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027619	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
LJNas_10000725	3300000546	Quercus Rhizosphere	VPRDNEQKEANDSEIISDREVWSAIRYLDPEWESERKKSDNAAVVAVLAIVCIYSLIIVYLHQL*
JGI12712J15308_101694411	3300001471	Forest Soil	VPRNNEQKEANESAIVFEREVWSAIRYLDPESESDGRKGDIVAAIAVLAIVCMLCTVIFYLRQL*
JGIcombinedJ26739_1000423933	3300002245	Forest Soil	VPRNNEQKEANESXIXFEREVWSAIRYLDPESESDGRKGDIVAAIAVLAIVCMLCTVIFYLRQL*
JGIcombinedJ26739_1000601704	3300002245	Forest Soil	VPGNNEQKEANESKIIFDREVWRAIRYLDPDSESDRRKGDIAAAIAVLAIVCMLCKVIFYLYQQ*
JGIcombinedJ26739_1010288101	3300002245	Forest Soil	VPKNNEQKEANESEIVFDREVWCAIRYLDPESESDRRKGDIAAAIAVLAIVCMLCTVIFYLHQL*
JGI25616J43925_100252462	3300002917	Grasslands Soil	VPRDNEQKEANDSEIISDRAVWSAIRYLDPESESDRRKSDIAAAITVLAIVCMYGVIIVYLHQM*
Ga0070762_105148932	3300005602	Soil	VPRNNEQKEANESEIAFEREVWSAIRYLDPESDGRKGDIAAAIAVLAIVCMLCTVIFYLRQV*
Ga0070762_106443332	3300005602	Soil	VPRNNEPKEANESEIVFDREVWCAIRYLDPDRRKGDVAAAIAVLAIVGVLCTVIFYLR*
Ga0070762_106563411	3300005602	Soil	KEANQSEIVFDREVWCAIRYLDPESGSGRRKGDVAAAIAVLAIVCMLCTVIFYLHQ*
Ga0070763_100678173	3300005610	Soil	VPRNNEQKEANQSEIVFDREVWCAIRYLDPESGSGRRKGDVAAAIAVLAIVCMLCTVIFYLHQ*
Ga0070764_106250741	3300005712	Soil	RNNEQKEANQSEIVFDREVWCAIRYLDPESGSGRRKGDVAAAIAVLAIVCMLCTVIFYLHQ*
Ga0070717_118372391	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VESNVPRSNQQKEANDHGTISDQEVWSAIRYLDPESDDSESDITAGIALLVVVCIVCLVCALLHLRGL*
Ga0070765_1000504242	3300006176	Soil	VPRNNAQKEANESEIVFDREVWCAIRYLDPDRRKGDVAAAIAVLAIVGVLCTVIFYLR*
Ga0073928_100032708	3300006893	Iron-Sulfur Acid Spring	VPRDNEQKEANENEIISDRAVWSAIHYLDPESETDRRKSDIAAAITVLAIICMYGVIIVYLHQM*
Ga0073928_100095103	3300006893	Iron-Sulfur Acid Spring	VPRDNEQKEANDIEIISDREVWSAIRYLDPESDSDRRKSDIAAAIAVLAIVCMYCVAIVYLHRL*
Ga0073928_105793922	3300006893	Iron-Sulfur Acid Spring	RSKVPRNNEQKEANESEIVFDREVWCAIRYLDPESESDRRKGDFAAAIAVLAIVCLLCTVIFYLH*
Ga0099793_104493311	3300007258	Vadose Zone Soil	VPRGKEQKEANDSEVISDREVWSAIRYLDPESESDRRQGDIAAAIALMAIVCIVCMVIALLHLRGL*
Ga0099795_100712252	3300007788	Vadose Zone Soil	MWWRSKVPRDNEQKEANDSEVISDREVWSEIRYLDPESESERRESDIAAAIAVLSIVCMLCAIIVYLHEL*
Ga0099792_104774432	3300009143	Vadose Zone Soil	VLRDNEQKEANDSEIISDREVWSAIRYLDPESESHRRKSNIAAAIAVLAIISMLCTVIVYLHEL*
Ga0137392_100386976	3300011269	Vadose Zone Soil	VPRGNEQKEANDSEIISDREVWSAIRYLDPESESDRRQGDIAAAIALMAIVCIVCMVIALLHLRGL*
Ga0137391_100492493	3300011270	Vadose Zone Soil	VPRGNEQEEANDIEIISDREVWSAIRYLDPESESDRRQGNIAAAIALMAIVCIVCMVIALLHLRGL*
Ga0137383_100320483	3300012199	Vadose Zone Soil	VPRNNEQKEANDSEIISDGEVWSAIRYLDPESDHRECDIAAAIAVLAIVAIVCMVIVFLQRL*
Ga0137363_1000041914	3300012202	Vadose Zone Soil	VPRNNQQKEAHDHGIISDREVWSAIRYLDPESDHRQSDIAATIALLAVVGIICLVCVLLNSRGL*
Ga0137363_100318104	3300012202	Vadose Zone Soil	VPNNEQKEANDREIISDGEVWSAIRYLDPESDHRECDIAAAIAVLAIVAIVCMVIVFLQRL*
Ga0137399_100590641	3300012203	Vadose Zone Soil	VPRDKGQKEATDSEIIFDREVWSAIRYLDPESESNRRKSNIAAAIAVLSIVFMLCAVLVFLHEL*
Ga0137399_114197631	3300012203	Vadose Zone Soil	VPRGKEQKEANDSEVISDREVWSAIRYLDPESESDRRKSDIAAVVAVFAVVCMYCVIIVYLHEL*
Ga0137362_111626831	3300012205	Vadose Zone Soil	NLWWRSKVPRGKEQKEANDSEIISDREVWSAIRYLDPESESDRRQGDIAAAIALTAIVCIVCMVMALLHLRGL*
Ga0137358_101008812	3300012582	Vadose Zone Soil	VPRNNEQKDGNDSEVISDREVWSAIRYLDPESESDRRKSDIAAAIAVLAIVCMLCVVIVYLHECRIWKL*
Ga0137398_102490563	3300012683	Vadose Zone Soil	VPRDNEQKEANDSEIISDREVWSAIRYLDPESESAGRKSDIAAVIAVLAIVFMYCVIIVYLHEL*
Ga0137398_103704672	3300012683	Vadose Zone Soil	VPRDNEQKEANDSEVISDREVWSEIRYLDPESESERRESDIAAAIAVFSIVCMLCAIIVYLHEL*
Ga0137397_100783592	3300012685	Vadose Zone Soil	VPRGKEQKEANDSEVISDREVWSAIRYLDPESESDRRQGDIAAAIALTAIVCIVCMVMALLHLRGL*
Ga0137396_110380802	3300012918	Vadose Zone Soil	VPRNNEQKEANDSEIISDREVWSAIRYLDPESDHRECDIVAAIAVLAAVCIVCMVAWLFHIRGL*
Ga0137359_102266832	3300012923	Vadose Zone Soil	VPRNNQQKEAIDTEIISDREVWSAIRYLDPESDHRQCDIAAAIAVLAIVAIVCMVIVFLQRL*
Ga0137413_101700952	3300012924	Vadose Zone Soil	VPRNNEQKEANDSEIICDREVWSAIRYLDPESDHRECDIAAAIAVLAAVCIVCMVALLFHLRGL*
Ga0137419_100202411	3300012925	Vadose Zone Soil	LPAKSWWRFKMPRHNEQKEANDSEIISDREIWSAIRYLDPESESNRRKSNIAAAIAVLSIVFMLCAVLVFLHEL*
Ga0137419_107621242	3300012925	Vadose Zone Soil	VPRNNEQKEANDSEIISDREVWSAIRYLDPESDHRECDIAAAIAVLAVVCIVCMVALLFHLRGL*
Ga0137416_102401631	3300012927	Vadose Zone Soil	VPRDNEQKEANDSEFISDREVWSEIRYLDPESESERRESHIAAAIAVLSIVCMLCAIIVYLHEL*
Ga0137416_105294313	3300012927	Vadose Zone Soil	VPRGNEQKEANESEIISDREVWSAIRYLDPESESDRRQGDIAAAIALMAIVCIVCMVIALLHLRGL*
Ga0137416_111561712	3300012927	Vadose Zone Soil	VPRDKEQKEANDSEIISDREVWSAIRYLDPESESDRRKSNIAAAIAVLSIVFMLSAVLVYLHEL*
Ga0137404_111291701	3300012929	Vadose Zone Soil	VPRNNEQKEANDSEIICDREVWSAIRYLDPESDHRECDIAAAIAVLAVVCIVCMVALLFHLRGL*
Ga0137404_120388951	3300012929	Vadose Zone Soil	RRTRGGGPKVPRNNEQKEANDSEIISDREVWSAIRYLDPESDHRECDIAAAIAVLAVVCIVCMVALLFHLRGL*
Ga0137410_101480012	3300012944	Vadose Zone Soil	VSRNNEQKEANDSEIICDREVWSAIRYLDPESDHRECDIAAAIAVLAAVCIVCMVALLFHLRGL*
Ga0182015_101068203	3300014495	Palsa	VPRNNEPKEANESEIVFDREVWCAIRYLDPESESDRRKGDVAAAIAVLAIVCILCTVIFYLHHL*
Ga0137420_10666511	3300015054	Vadose Zone Soil	VPRDKEQKEANDSEIISDREVWSAIRYLDPESESDRRKSNIAAAIAVLSIVFMLSAVLVYLVLVYLHEL*
Ga0137420_10859571	3300015054	Vadose Zone Soil	VPRDKEQKEANDSEIISDREVWSAIRYLDPESESDRRKSNIAAAIAVLSIVFMLSAVLVYLFLSTFTSCRIRKL*
Ga0137408_14842842	3300019789	Vadose Zone Soil	MDESITVIEHRVSTGLHCRRTRGGGPKVARNNEQKEANDSEIICDREVWSAIRYLDPESDHRECDIAAAIAVLAVVCIVCMVALLFHLRGL
Ga0193729_10164501	3300019887	Soil	VPRNNEQKEANDHRTISDREVWSAIRYLDPESDHRESEVAVTIAVSALLCIVSIVCVLVRRRRAA
Ga0193729_10782493	3300019887	Soil	VPGNNEQKKRDSEIISERQIWSAIRYLDPESEHRESDVAAAIAVLAIVCILCMVIVLLHLRG
Ga0193729_11230771	3300019887	Soil	VPRGNEQKEANNSEVISDREVWSAIRYLDPESESDRRQGDIAAAIALMALVCIVCMVIALLHLRGL
Ga0193751_10045469	3300019888	Soil	VPRDNEQKEANEGEIISDRAVWSAIRDLDPESESDRRKSDIAAAITVLAIVCMYGVIIVYLHQM
Ga0193728_12486761	3300019890	Soil	VPRNSERKEVNDSEVISDREVWSEIRYLDPESESERRGSDIAAAIAVLSIVCMLCAIIVYLHEL
Ga0179594_100914932	3300020170	Vadose Zone Soil	VPRGKEQKEANDSEVISDREVWSAIRYLDPESESDRRQGDIAAAIALTAIVCIVCMVMALLHLRGL
Ga0210407_101096861	3300020579	Soil	VPRGNERKKANDSEIISNWEVWSAIRYLDPESESDRRQSDVAAAIALMAIVCIVCMVIALLRLRGL
Ga0210407_104071832	3300020579	Soil	VPGNHQHKEANDQGVISDREVWSAIRYLDPELDKRESDIAAAIAVSAVVCIVCLVRALLLLRGL
Ga0210407_113626531	3300020579	Soil	VRRNNEQKEANDSEIISEREVWSAIRYLDPELDHSESDIAAAIAVLAIVSIVCLVMVFLHRL
Ga0210401_103402173	3300020583	Soil	VPRNNEPKEANESEIVFDREVWCAIRYLDPESESDRRKGDVAAAIAVL
Ga0210401_115849712	3300020583	Soil	TMSRKKRKDSEIISDREVWSAIRYLDPESESDRRKSDIAAAIAVVAIVCMYCVIFVYLHE
Ga0210406_101368062	3300021168	Soil	VRRNNEQKEANDSEIISEREVWSAIRYLDPELDHRESDIAAAIAVLAIVSIICLVMVFLHRL
Ga0210405_105971981	3300021171	Soil	VPRGNEQKEANDGQIISDREVWSAIRYLEAESESDRRQGDIAAAIALMAIVCIVCMVIALLHLRGL
Ga0210396_1000219313	3300021180	Soil	VPRNHQQKETNDPGLISDQEVWSAIRYLDPELDHRESDVAAASAFSAVVCIVCLVRVLLLLRGL
Ga0210396_112434402	3300021180	Soil	VPRNNAQKEANESEIVIDREVWCAIRYLDPDRRKGDVAAAIAVLAIVGVLCTVIFYLR
Ga0210393_100041266	3300021401	Soil	VPRNNEQKEANQSEIVFDREVWCAIRYLDPESGSGRRKGDVAAAIAVLAIVCMLCTVIFYLHQ
Ga0210393_104359071	3300021401	Soil	VPRNNAQKEANESEIVFDREVWCAIRYLDPDRRKGDVAAAIAVLAIVGVLCTVIFYLR
Ga0210384_104757111	3300021432	Soil	VPRNNEQKEAGESEIVFDREVWSAIRYLDPESESHRRKGDIAAAIAVLAIVCMLCTAIFYLRPL
Ga0210390_109451052	3300021474	Soil	VPRNNAQKEANESEIVFDREVWCAIRYLDPDRRKGDVAAAIAVLAIVGVLGTVIFYLR
Ga0212123_100102618	3300022557	Iron-Sulfur Acid Spring	VPRDNEQKEANENEIISDRAVWSAIHYLDPESETDRRKSDIAAAITVLAIICMYGVIIVYLHQM
Ga0212123_100748862	3300022557	Iron-Sulfur Acid Spring	VPRNNEQKEANESEIVFDREVWCAIRYLDPESESDRRKGDVAAAIVVLAIVCLLCTVIFYLQ
Ga0212123_101121063	3300022557	Iron-Sulfur Acid Spring	VPRDNEQKEANDIEIISDREVWSAIRYLDPESDSDRRKSDIAAAIAVLAIVCMYCVAIVYLHRL
Ga0224551_10668392	3300023259	Soil	VPRNNEPKEANESEIVFDREVWCAIRYLDPESESDRRKGDVAAAIAVLAIVC
Ga0233359_10305611	3300024049	Soil	VPPGKERKEANDTEIISDREVWYAIRYLDPESDHTDCNIAATIAVLSIVCIVCVVIALLHLRGL
Ga0179589_102224121	3300024288	Vadose Zone Soil	VPRGNEQKEPNDSEIISDREVWSAIRYLDPESESDRRKSDIAAVVAVFAIVCMYCVIIVYLH
Ga0257178_10567202	3300026446	Soil	VPRNNEQKDGNDSEVISDREVWSAIRYLDPESESDRRKSDLAAAIAVLAIVCMLCVVIVYLHEL
Ga0257154_10019433	3300026467	Soil	VPRNNGQKEANESEIVFEREVWFEIRYLDPESESDGRKGDIAAAIAVLAIVCVLCTVIFYLHQL
Ga0257155_10477622	3300026481	Soil	VPKNNEQKDGNDSEVISDRKVWSAIRYLDPESESDRRKSDIAAAIAVLAIVCMLCVVIVYLHEL
Ga0257160_10108382	3300026489	Soil	VQRDNEQKEANDNEIISDREVWSVIRYLDPESESDRRESDIATVIAVFAIVCMYCVIIVYLHEL
Ga0257181_10340002	3300026499	Soil	VPRGNEQEEANDIEIISDREVWSAIRYLDPESESDRRQGDIAAAIALMAIVCIVCMVIALLHLRGL
Ga0257168_10359621	3300026514	Soil	VLRDNEQKEANDSEIISDREVWSAIRYLDPESESHRKKSNIAAAIAVLAIISMLCTVIVYLHEL
Ga0257168_10403321	3300026514	Soil	VPRGKEQKEANDSEIISDREVWSAIRYLDPESESDRRQGDIAAAIALMAIVCIVCMVIALLHLRGL
Ga0257168_10434392	3300026514	Soil	KEANDSEIISDREVWSAIRYLDPESESDRRQGDIAAAIALMAIVCIVCMVIALLHLRGL
Ga0179587_102942082	3300026557	Vadose Zone Soil	VPRDNEQKEANDSEVISDREVWSEIRYLDPESESERRESDIAAAIAVLSIVCMLCAIIVYLHEL
Ga0209332_10201932	3300027439	Forest Soil	VPRDNEQKEANDREIISDGEVWSAIRYLDPESESDLRKIDIAATIAVLAIVCMYCVIIVYLHEL
Ga0209008_10024174	3300027545	Forest Soil	VPRNNEQKEANESEIIFEREVWSAIRYLDPESESDGRKGDIVAAIAVLAIVCMLCTVIFYLRQL
Ga0209525_11417341	3300027575	Forest Soil	VPRNNEQKEANESAIVFEREVWSAIRYLDPESESDGRKGDIVAAIAVLAIVCMLCKVIFYLYQQ
Ga0209527_10432701	3300027583	Forest Soil	VPRGNKQKEANDSEIISDREVWSAIRYLDPESESDRRQGDIAAAIALMAIVCIVCMVIALLHLRGL
Ga0209330_10007765	3300027619	Forest Soil	VPGNNEQKEANESKIIFDREVWRAIRYLDPDSESDRRKGDIAAAIAVLAIVCMLCKVIFYLYQQ
Ga0208988_10868592	3300027633	Forest Soil	VPRGNKQKEANDSEIISDREVWSAIRYLDPESESDRRQGDIAAAIALLALVCIVCVVIVLLHLRGL
Ga0208991_10300714	3300027681	Forest Soil	VPRGNKQKEANDSEIISDLEVWSAIRYLDPESESDRRQGDIAAAIALLALVCIVCVVI
Ga0208991_11491952	3300027681	Forest Soil	VPRDKEQKEANDSEIISDREVWSAIRYLDPESESDRRKSNIAAAIAVLSIVFMLCAVLVFLHEL
Ga0208989_101548032	3300027738	Forest Soil	VPRDKGQKEANDSEVISDREVWCAIRYLDPESESDRRKSNIAAAIAVLSIVFMLSAVLVYLHEL
Ga0209275_102251173	3300027884	Soil	VPRNNEPKEANESEIVFDREVWCAIRYLDPESESDRRKGDVAAAIAVLAIVCMLCTVIFYLHQ
Ga0209488_100574742	3300027903	Vadose Zone Soil	VPRGNEQEEANDIEIISDREVWSAIRYLDPESESDRRQGNIAAAIALMAIVCIVCMVIALLHLRGL
Ga0209488_107017351	3300027903	Vadose Zone Soil	VLRDNEQKEANDSEIISDREVWSAIRYLDPESESHRRKSNIAAAIAVLAIISMLCTVIVYLHEL
Ga0209488_110143542	3300027903	Vadose Zone Soil	VPNNEQKEANDREIISDGEVWSAIRYLDPESDHRECDIAAAIAVLAIVAIVCMVIVFLQR
Ga0209006_102937943	3300027908	Forest Soil	VPRGKEQKEANDSEIIFDREVWSTIRYLDPESDHTDCNIAATIAVFSIVCIVCVVIALLHLRGL
Ga0137415_100604542	3300028536	Vadose Zone Soil	VPRNNQQKEAHDHGIISDREVWSAIRYLDPESDHRQSDIAATIALLAVVGIVCLVCGLLNSRGL
Ga0137415_102468902	3300028536	Vadose Zone Soil	VPRGKEQKEANDSEVISDREVWSAIRYLDPESESDRRQGDIAAAIALMAIVCIVCMVIALLHLRGL
Ga0308309_111168041	3300028906	Soil	RATRAKRRSSKVPRNNEQKEVNESEIVFDREVWCAIRYLDPDRRKGDVAAAIAVLAIVGVLCTVIFYLR
Ga0073994_100200841	3300030991	Soil	VPRGNEQKEANDSEIISDREVWSAIRYLDPESESDRRQGDIAAAIALMAIVCIVCMVIALLHLRGL
Ga0265760_100442543	3300031090	Soil	VPRNNEQKEANESEIVFDREVWCAIRYLDPESESDRRKGDIAAAIAVLAIVCVLCTVIFYLHQL
Ga0310686_1024179492	3300031708	Soil	VPRNNEPKEANESEIVFDREVWCAIRYLDPESESDRRKGDVAAAIAVLAIVCILCTVIFYLHQL
Ga0310686_1033636891	3300031708	Soil	VPRDNEQKEANESEIVFDREVWSAIRYLDPELESDRRKGDIAAAIAMLAIVCMLCAAIFYLH
Ga0307476_1000016555	3300031715	Hardwood Forest Soil	VSRNNEQKEANDSEIISDREVWSAIRYLDPESESDRRKSDIAVAIAVLAIVCMYCVIIVYLHEL
Ga0307476_100019072	3300031715	Hardwood Forest Soil	VPRDNEQKEANDSEIISDREVWSAIRYLDPESQSDRRKSDITAAIAVLAIVCMYCVIIVYLHQL
Ga0307474_100001091	3300031718	Hardwood Forest Soil	VSRNNEQKEAYDSEIISDREVWSAIRYLDPESESDRRKSDIAVAIAVLAIVCMYCVIIVYLHEL
Ga0307474_100071202	3300031718	Hardwood Forest Soil	VPRNNEQKEANQSEIVFDRELWSAIRYLDPESESDGRKGDIAAAIAVLAIVCMLCTVIFYLRQL
Ga0307474_102633872	3300031718	Hardwood Forest Soil	VPRNNGQKEANESEIVFDREVWCAIRYLDPESESDRRKGDVAAAIAVLAIVCMLCTVILYLH
Ga0307474_104781271	3300031718	Hardwood Forest Soil	KEANDSEIISDREVWSAIRYLDPESQSDRRKSDITAAIAVLAIVCMYCVIIVYLHQL
Ga0307478_103949132	3300031823	Hardwood Forest Soil	VPRNNEQKEANQSEIVFDREVWCAIRYLDPESGSGRRKGDVAAAIAVLAIVCMLCTVIVYLHQ
Ga0307479_116282881	3300031962	Hardwood Forest Soil	VRRNNEQKEAKDSDTISEREVWSAIRYLDPESDHRESDIAAAIAVLAIVSIVCLVMVFLHRL
Ga0307470_100731491	3300032174	Hardwood Forest Soil	VPRDHKQEEANDSEIISEREVWSAIRYLDPESESDRRNNDIAAEIVVVAIVCNVRCDYC
Ga0307471_1026923732	3300032180	Hardwood Forest Soil	MPRHNEQKEANDSEIISDREIWSAIRYLDPESESDRRKSDIAAAITVLAIICM

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085959

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences