NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F085919

Metagenome Family F085919

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F085919
Family Type Metagenome
Number of Sequences 111
Average Sequence Length 59 residues
Representative Sequence MEQSTNTKVDWTNRRTYVAAGLIAATLSVGILIGTVVSGKVSAMRSFSFAGTNAA
Number of Associated Samples 109
Number of Associated Scaffolds 111

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 100
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(25.225 % of family members)
Environment Ontology (ENVO) Unclassified
(29.730 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(59.459 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 46.99%    β-sheet: 0.00%    Coil/Unstructured: 53.01%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 111 Family Scaffolds
PF00291PALP 27.93
PF13365Trypsin_2 1.80
PF13180PDZ_2 0.90
PF02597ThiS 0.90
PF07687M20_dimer 0.90
PF13520AA_permease_2 0.90
PF02738MoCoBD_1 0.90

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 111 Family Scaffolds
COG1977Molybdopterin synthase sulfur carrier subunit MoaDCoenzyme transport and metabolism [H] 0.90
COG2104Sulfur carrier protein ThiS (thiamine biosynthesis)Coenzyme transport and metabolism [H] 0.90


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Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil25.23%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil10.81%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil9.01%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil9.01%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil9.01%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland4.50%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment3.60%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil3.60%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil3.60%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil3.60%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.80%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.80%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.80%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil1.80%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.80%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.90%
SedimentEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment0.90%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.90%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.90%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.90%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.90%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.90%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.90%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.90%
Activated SludgeEngineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge0.90%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000909Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 37EnvironmentalOpen in IMG/M
3300001867Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005533Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1EnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300009824Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaGEnvironmentalOpen in IMG/M
3300009870Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plantEngineeredOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010937Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139EnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017822Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2EnvironmentalOpen in IMG/M
3300017936Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1EnvironmentalOpen in IMG/M
3300017944Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MGEnvironmentalOpen in IMG/M
3300017974Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MGEnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300017994Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2EnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300018025Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100EnvironmentalOpen in IMG/M
3300018088Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MGEnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300024186Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK29EnvironmentalOpen in IMG/M
3300024288Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungalEnvironmentalOpen in IMG/M
3300024347Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300025441Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100 (SPAdes)EnvironmentalOpen in IMG/M
3300025472Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100 (SPAdes)EnvironmentalOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)EnvironmentalOpen in IMG/M
3300026446Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-BEnvironmentalOpen in IMG/M
3300026489Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-AEnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300026824Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 27 (SPAdes)EnvironmentalOpen in IMG/M
3300026849Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 46 (SPAdes)EnvironmentalOpen in IMG/M
3300026890Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 51 (SPAdes)EnvironmentalOpen in IMG/M
3300026909Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 23 (SPAdes)EnvironmentalOpen in IMG/M
3300027010Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 64 (SPAdes)EnvironmentalOpen in IMG/M
3300027014Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 4 (SPAdes)EnvironmentalOpen in IMG/M
3300027043Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 11 (SPAdes)EnvironmentalOpen in IMG/M
3300027045Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 40 (SPAdes)EnvironmentalOpen in IMG/M
3300027071Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027376Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027565Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027667Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027671Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027684Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027703Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)EnvironmentalOpen in IMG/M
3300027727Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027768Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027915Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300030706Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)EnvironmentalOpen in IMG/M
3300031344Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaGHost-AssociatedOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031682Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22EnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031798Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031880Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25EnvironmentalOpen in IMG/M
3300031894Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032063Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17EnvironmentalOpen in IMG/M
3300032066Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300032893Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1EnvironmentalOpen in IMG/M
3300032898Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M
3300034091Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00NEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12488J12863_10940813300000909Tropical Forest SoilMDQVTHSGDWTRRRKLVVAGLISLTLVIGIMIGTVVSGKVSAMRTFSFGGTNAAPLALPDPIPSSNSFS
JGI12627J18819_1037968823300001867Forest SoilMDEARNGMVDWTRRRKMVAAGLIAATLTVGIMIGTVISDRVSAMRGFSFAG
JGIcombinedJ26739_10063271013300002245Forest SoilMDRTADKSMRRKYLAATLIAITLIVGIMIGTVISGRVSAMKTFSFAGSSAAPLALPDPIPSSNTFAAIVNRVEPA
Ga0062389_10497182223300004092Bog Forest SoilMEHLKGTVDWKQRRKYVAGVLIAATLAVGIMIGTVISGKVSAMKTFSFPGTTA
Ga0070734_1036375523300005533Surface SoilMEQVKNKVDWSRRRKTVVGGIIAATLCVGIMIGTLVSGRVSAMKSGSLFSGTDAATLA
Ga0070730_1105776413300005537Surface SoilMEQSTNTKVNWTNRRTYVAAGLIAATLSVGILIGTVVSGKVSAMRSLTFTGTSAAPLSLPDPIP
Ga0070733_1012992213300005541Surface SoilMEQSTNNKVNWSNRRTYVAAGLIAATLSVGILIGTVVSGKVSAMRSFTFAGTNAAPLS
Ga0075017_10097127713300006059WatershedsMDQARNVGDWTRRRKMVAAGLVSATLVVGIMIGTVVSGKVSAMR
Ga0070765_10164985823300006176SoilMVQTADKSMRRKYLAATLIAITLVVGIMIGTVISGRVSAMRNFAFGGTSAAPLALPDPIPSSNTFAAIV
Ga0079222_1029655813300006755Agricultural SoilMEQLTNNKVNWSSRQTYVAAGLIAATLSVGILIGTVVSGKVSAMRSFTFAGTNAAPLSLPDPIP
Ga0116219_1010121223300009824Peatlands SoilMDHVREMVDWTQRRKIVVAGLIAATLIVGILIGTVISGKVSAMKA
Ga0131092_1148417513300009870Activated SludgeMDPVTTVSDRTSRRKLVLAALISATLVIGIMIGTLVSGKVSAMRAFSFGGRSEE
Ga0126373_1113798013300010048Tropical Forest SoilMEQSNNKVDWTRRRTYVAAGLIAATLSVGILIGTVVSGKVSAMRSFSFTGAASAKPLILPDPVP
Ga0074044_1031877923300010343Bog Forest SoilMDPVREMVDWTRRRKIVVAGLIAATLIVGILIGTVISGKVSAMKALSFAGTNAT
Ga0126383_1190235113300010398Tropical Forest SoilMEQGNNKVDWTRRRTYVAAGLVAVTLTVGILIGSVVSGRVSAMKSFPFLGAS
Ga0137776_141258013300010937SedimentMEQLNNKVDWTRRRTYLAAGLIAATLSVGIMIGTVVSGKVSAMKSFSFAKGAEAAPLALPDPVPSSN
Ga0137385_1047070623300012359Vadose Zone SoilMEQSTNTKVNWSNRRTYVAAGLIAATLSVGILIGTVVSGKVSAMRSFSFAGTNAAPLSLPDP
Ga0137419_1197431713300012925Vadose Zone SoilMEQSTNTKVNWTNRRTYVAAGLIAATLSVGIMIGTVVSGKVSAMRSFTFAGTSAAPLSLPDP
Ga0137416_1046243013300012927Vadose Zone SoilMEQSTNSKVNWTSRRTYVAAGLIAATLSVGILIGTVVSGKVSAMRSFSFAGSSATPLALP
Ga0126369_1327336713300012971Tropical Forest SoilMDEGRNGMVDWTRRRKMVAAGLIAATLTVGIMIGTLVSDRVSAMRSFSFSGTNAAALALPDPIPSSNSF
Ga0137420_106856313300015054Vadose Zone SoilMEQSTNSKVNWTSRRTYVAAGLIAATLSVGILIGILIGTVVSGKVSAMRSFSFAGSSATPLALPDPIP
Ga0182036_1142645613300016270SoilMDEGRNGMVDWTRRRKMVAAGLIAATLSVGIMIGTLVSDRVSAMRSFSFSGTNAAPLTLPDPIPSSNS
Ga0182033_1173854913300016319SoilMDEGRNGMADWTRRRKMVAAGLIAATLTVGIMIGTLVSDRVSAMRSFSFSGTNAAALTLPDPIPSSNSFNGIVNRVE
Ga0182035_1172119313300016341SoilMDEGRNGMVDWTRRRKMVAAGLIAATLTVGIMIGTLVSDRVSAMRSFSF
Ga0182034_1183164423300016371SoilMDEGRNGMVDWTRRRKMVAAGLIAATLTVGIMIGTLVSDRVSAMRSFSFSGTNAAALALPDPIPSS
Ga0182040_1149039513300016387SoilMDEGRNGMVDWTRRRKMVAAGLIAATLSVGIMIGTLVSDRVSAMRSFSFSGTNAAPLTLPDPIPSS
Ga0182038_1217925313300016445SoilMDQVTNLSDRTRRRKLVLAALISATLVIGIMIGTVVSGKVSAMRAFSFAGTNATPLALPDPV
Ga0187802_1011414613300017822Freshwater SedimentMDQVRNVIDWTRRRKVVVAGLIAATLVVGIMIGTVISGRVSAMKGFSFAGT
Ga0187821_1016006413300017936Freshwater SedimentMEQLNNKVDWTRRRTYLAAGLIAATLSVGIMIGTVVSGKVSAMKSFSFAKGAEAAPLALPDPVPSSNSF
Ga0187786_1031252713300017944Tropical PeatlandMEQGTTKVDWSRRRTFVAAGLIAATLSVGIMIGTVVSGKVSAMKSFSFAGGT
Ga0187777_1019635813300017974Tropical PeatlandMDQVRITGDWTRRRKLVAAGLISSTLAIGIMIGTVVSGKVSAMRTFSFAGSNATPLAL
Ga0187782_1009637633300017975Tropical PeatlandMDQVKNVVDWTRRRKVVAAGLIAATLVVGIMIGTVVSGRVSAMRSLAFAGTSAAPLALPDPIPSSN
Ga0187822_1027303013300017994Freshwater SedimentMDQVRNVVDWTRRRKVVVAGLIAATLVVGIMIGTVISGRVSA
Ga0187816_1013838013300017995Freshwater SedimentMEQSNNKVDWTRRRTYVAAGLIAATLTVGIMIGTVVSGKVSAMRSFSFSGASSATPLSLPDPVPSSNS
Ga0187885_1003456033300018025PeatlandMDPVRGMVDWTRRRKIVVAGLVAATLVVGILIGTVISGRVSAMKAL
Ga0187771_1016261113300018088Tropical PeatlandMDHVRNVVDWTRRRKVVAAGLIAATLLVGIMIGTLISGRVSAMKGLAFAGTNAT
Ga0187771_1101121113300018088Tropical PeatlandMDHVREMADWTRRRKIVVAGLVAATLIVGMLIGTVISGKVSAMKALSFAGTNATPLALPDPIPSSNSFNS
Ga0210407_1003196913300020579SoilMEQSTNTKVNWTSRRTYVAAGLIAATLSVGILIGTVVSGKVSAMRSFSFAGSSAA
Ga0210399_1013222613300020581SoilMEQSTNTKVNWSSRRTYVAAGLIAATLSVGILIGTVVSGKVSAMRSF
Ga0210395_1099971713300020582SoilMEQSTNNKVNWTSRRTYVAAGLIAATLSVGILIGTVVSGKVSAMRSFSFTGGAGAT
Ga0210396_1103372213300021180SoilMEQSTNTKVNWTNRRTYVAAGLIAATLSVGILIGTVVSGKVSAMRSFSFAGTSAAPLALPDPIPSSN
Ga0210397_1070066023300021403SoilMEQVRNKVDWTRRRKMVVAGLIAATLAVGIMIGTVVSGRVSAFMLF
Ga0210387_1042531313300021405SoilMEQVRNKVDWTRRRKMVVAGLIAATLAVGIMIGTVVSGRVSAMKAFSTFTG
Ga0210394_1167861513300021420SoilMEQSTNNKVNWSNRRTYVAAGLIAATLSVGILIGKVVSGKVSAMR
Ga0210391_1025692713300021433SoilMDQPRNMADWTRRRKMIATVSIAATLVIGIFIGTLVNGKVSAMHSFSFAGTSAAPLALPDPIPSSSSFSGIVN
Ga0210409_1086877813300021559SoilMEQSTNTKVNWTSRRTYVAAGLIAATLSVGILIGTVVSGKVSAMRSFSFAGTSATPLALPDPIPSSN
Ga0126371_1377727713300021560Tropical Forest SoilMDEGRNGMVDWTRRRKMVAAGLIAATLTVGIMIGTLVSDRVSAMRSFSFSGTNAAALALP
Ga0247688_104030413300024186SoilMEQSTNTKVDWTNRRTYVAAGLIAATLSVGILIGTVVSGKVSAMRSFSFAGTNAA
Ga0179589_1057025313300024288Vadose Zone SoilMEQSTNNKVTWSTRRTYVAAGLIAATLSVGILIGTVVSGKVSAMRSFTFAGTNAA
Ga0179591_112778453300024347Vadose Zone SoilMEQSTNSKVNWTSRRTYVAAGLIAATLSVGNPDWHGSFPAKFSAMRSFSFAGSSATPLALPDPIPSSNSFFGHCQSR
Ga0179591_118249423300024347Vadose Zone SoilMEQSTNTKVNWTNRRTYVAAGLIAATLSVGIMIGTVISGKVSAMRSFTFAGTSATPLSLPDRFLRRTVFRHSEPR
Ga0208456_106617813300025441PeatlandMDHVREMVDWTRRRKIVVAGLVAATLVVGILIGTVISGKVSAMKALSFAGTNATPLA
Ga0208692_102967313300025472PeatlandMDHVREMVDWTRRRKIVVAGLVAATLVVGILIGTVISGKVS
Ga0209131_119420413300026320Grasslands SoilMEQLTNSKVNWTSRRTYVAAGLIAATLSVGILIGTVVSGKVSAMR
Ga0209158_124259713300026333SoilMEQSTNTKVNWTNRRTYVAAGLIAATLSVGIMIGTVVSGKVSAMRSFTF
Ga0257178_103861123300026446SoilMEQSTNTKLNWTSRRTYVAAGLIAATLSVGILIGTVVSGKVSAMRSFTF
Ga0257160_104270923300026489SoilMEQSTNNKVNWSSRRTYVAAGLIAATLSVGILIGTVVSGKVSAMRSFTFAGSS
Ga0179587_1047792923300026557Vadose Zone SoilMEQSTNSKVNWTSRRTYVAAGLIAATLSVGILIGTVVSGKVSAMRSFSFAGSSATPLALPDPI
Ga0207723_10898513300026824Tropical Forest SoilMDEGRNGMVDWTRRRKMVAAGLVAATLTVGIMIGTLVSDRVSAMRSFSFSGTNAAALT
Ga0207804_12632013300026849Tropical Forest SoilMDQVTHSGDWTRRRKLVVAGLISLTLVIGIMIGTVVSGKVSAMRTFSFGGTNAAPLALPDPIPSSNSFSGIV
Ga0207781_103019413300026890Tropical Forest SoilMDQVTHSGDWTRRRKLVVAGLISLTLVIGIMIGTVVSGKVSAMRTFSFGGTNA
Ga0207858_100086853300026909Tropical Forest SoilMDEGRNGMVDWTRRRKMVAAGLVAATLTVGIMIGTLVSDRVSAMRSFSFSGTNAAALTLPDPIPSS
Ga0207839_102298423300027010Tropical Forest SoilMDEGRNGMVDWTRRRKMVAAGLVAATLTVGIMIGTLVSDRVSAMRSFSFSGTNAAA
Ga0207815_102290623300027014Tropical Forest SoilMDEGRNGMVDWTRRRKMVAAGLIAATLTVGIMIGTLVSDRVSAMRSFSFSGTNAAA
Ga0207800_101957113300027043Tropical Forest SoilMDEGRNGMVDWTRRRKMVAAGLVAATLTVGIMIGTLVSDRVSAMRSFSFSGTNAA
Ga0207726_105552913300027045Tropical Forest SoilMDEGRNGMVDWTRRRKMVAAGLVAATLTVGIMIGTLVSDRVSAMRSFSFSGTNA
Ga0209214_104555813300027071Forest SoilMDEARNGMVDWTRRRKMVAAGLIAATLTVGIMIGTVISDRVSAMRSFSFAGTN
Ga0209004_102072213300027376Forest SoilMEQSTNNKVNWTSRRTYVAAGLIAATLSVGILIGTVVSGRVSAMRSFSFTGGAGATA
Ga0209219_116569013300027565Forest SoilMEQSTNTKVNWTSRRTYVAAGLIAATLTVGILIGTVVSGKVSAMRSFSFAGSS
Ga0209009_106869223300027667Forest SoilMEQVRNKVDWTRRRKMVVAGLIAATLAVGIMIGTVVSGRVSAMKAFSTFTGTNATPLTLPDPIPSSNTFSSIVN
Ga0209588_126478413300027671Vadose Zone SoilMEQSTNTKVNWTSRRTYVAAGLIAATLSVGILIGTVVSGKVSAMR
Ga0209626_110913123300027684Forest SoilMEQSTNTKVNWTSKRTYVAAGLIAATLTVGILIGTVVSGKVSAMRSFSFAGS
Ga0207862_112544213300027703Tropical Forest SoilMDQVTHSGDWTRRRKLVVAGLISLTLVIGIMIGTVVSGKVSAMRTFSF
Ga0209328_1010719423300027727Forest SoilMEQQEQGIVNWVRRRKVVTAMLVVFTLIVGIMIGSVISGRVSAMKTATFSGTSATPLALPDPVPSSNSFSAIVN
Ga0209772_1007003923300027768Bog Forest SoilMDQTADKSMRRKYLAATLIAITLVVGIMIGTIISGRVSAMKSFALGGTTAAPLALPDPIPSSNTFAAIVNRVE
Ga0209701_1046365913300027862Vadose Zone SoilMEQVQVKDWSRRRKALAAALVAVTLVLGILIGTVISGKVSAMKMLNFSGTNAATLALPDPIPSSNTF
Ga0209167_1049912013300027867Surface SoilMEQSTNNKVNWSNRRTYVAAGLIAATLSVGILIGTVVSGKVSAMRSFTFAGTNAAPLSLPDP
Ga0209006_1011845713300027908Forest SoilMEQSTNTKVNWTSRRTYVAGGLIAATLSVGILIGTVVSGKVSAMRSFSFAGSSA
Ga0209069_1066338913300027915WatershedsMVQTADKSMRRKYLAATLIAITLVVGIMIGTVISGRVSAMRNFAFGGTSAAPLALPDPI
Ga0209526_1007394533300028047Forest SoilMEQSTNTKVNWTSRRTYVAGGLIAATLSVGILIGTVVSGKVSAMRSFSFAGSSAAPLALPDPIPSS
Ga0310039_1032182823300030706Peatlands SoilMDHVREMVDWTQRRKIVVAGLIAATLIVGILIGTVISGKVS
Ga0265316_1114555713300031344RhizosphereMDLVSSNAEKSRRRTFLVAVLVASTLILGILIGTVVSGRVSAMKGFTFSGTDAAAITLPDPVPSSNSFSAIV
Ga0318541_1035108513300031545SoilMDEGRNGMVDWTRRRKMVAAGLIAATLTVGIMIGTLVSDRVSAMRSFSFSGTNAAALALPDPIPSSNSFNGIVNRVE
Ga0318572_1034241713300031681SoilMDEGRNGMVDWTRRRKMVAAGLIAATLTVGIMIGTLVSDRVSAMRSFSFSGTNATALALPDPIPSSNSF
Ga0318560_1058519513300031682SoilMDHVRTVVDWSRRRKVVAAGLIALTLVVGIMIGTVISGRVSAMKGFAFAGTNATPLALPDPIPSSNSFASI
Ga0307476_1105155113300031715Hardwood Forest SoilMEQSTNTKVNWTNRRTYVAAGLIAATLSVGILIGTVVSGKVSAM
Ga0318500_1070158413300031724SoilMDQATNVGDWTRRRKLVAAGLISLTLVIGIMIGTVVSGKVSAMRAFSFAGTNAAPLALPDPIP
Ga0318501_1017087113300031736SoilMDEGRNGMVDWTRRRKMVAAGLIAATLSVGIMIGTLVSDRVSAMRSFSFSGTNAAPLTLPDPIPSSNSFN
Ga0306918_1101421113300031744SoilMDEGRNGMVDWTRRRKMVAAGLIAATLTVGIMIGTLVSDRVSAMRSFSFSGTNATALALPDPIPSSNSFN
Ga0318509_1023962613300031768SoilMDHVRTVVDWSRRRKVVAAGLIALTLVVGIMIGTVISGRVSAMKGFAFAGTNATPLALPDPIPSSNSR
Ga0318546_1083037313300031771SoilMDHVRTVVDWSRRRKVVAAGLIALTLVVGIMIGTVISGRVSAMKGFAFAGTN
Ga0318523_1061417113300031798SoilMNEGRNGMVDWTRRRKMVAAGLIAATLTVGIMIGTLVSDRVSAM
Ga0318568_1103342713300031819SoilMDQATNSGDWTRRRKLIAAALISLTLVIGIMIGTVVSGKVSA
Ga0307478_1169821913300031823Hardwood Forest SoilMEQSTNTKVNWTNRRTYVAAGLIAATLSVGILIGTVVSGKVSAMRSFSFAGTSAAPLALPDPVPS
Ga0306919_1013585813300031879SoilMDEGRNGMVDWTRRRKMVAAGLIAATLTVGIMIGTLVSDRVSAMRSFSFSGTNAAALALPDPIPSSNSFNGIVNRV
Ga0318544_1017086133300031880SoilMDEGRNGMVDWTRRRKMVAAGLIAATLTVGIMIGTLVSDRVSAMRSFSFSGTNAAALALPDPIPSSNSFN
Ga0318522_1005478023300031894SoilMDEGRNGMVDWTRRRKMVAAGLIAATLTVGIMIGTLVSDRVSAM
Ga0306923_1045510923300031910SoilMDEGRNGMVDWTRRRKMVAAGLIAATLTVGIMIGTLVSDRVSAMRSFSFSGTNA
Ga0310913_1130878613300031945SoilMDEGRNGMVDWTRRRKMVAAGLIAATLTVGIMIGTLVSDRVSAMRSFSFSGTNAAALALPDPIPSSNSFNGIVNR
Ga0310910_1007562743300031946SoilMDHVRTVVDWSRRRKVVAAGLIALTLVVGIMIGTVISGRVSAMKGFAFAGTNATPLALPDPIPSSNSF
Ga0306926_1164328633300031954SoilMDEGRNGMVDWTRRRKMVAAGLIAATLTVGIMIGTLVSDRVSAMRSFSFSG
Ga0306922_1242195813300032001SoilMDEGRNGMVDWTRRRKMVAAGLIAATLSVGIMIGTLVSDRVSAMRSFSFSGTN
Ga0318504_1001260743300032063SoilMDEGRNGMVDWTRRRKMVAAGLIAATLTVGIMIGTLVSDRVSAMRSFSFSGTNATALALP
Ga0318514_1007030213300032066SoilMEEGRNGMVDWTRRRKMVAAGLIAATLTVGIMIGTLVSDRVSAM
Ga0306920_10150367813300032261SoilMDQATNSGDWTRRRKLIAAALISLTLVIGIMIGTVVSGKVSAMRA
Ga0335079_1235012113300032783SoilMEQSNTKVDWSRRRTYVAAGLIAATLSVGIMIGTVVSGKVSAMKSFSFAGGTSAAPLALPDPIPSSN
Ga0335070_1137025613300032829SoilMDQVTNLGDRTRRRKFVLAALISATLVIGIMIGTVVSGKVSAMRAFSFAGTNATLLALPDPV
Ga0335069_1033501723300032893SoilMEQLNTKNVDWTRRRTYVAAGLIAATLSVGILIGTVVSGKVSAMKSFSFGG
Ga0335072_1071818423300032898SoilMEQVRNEVDWTRRRKIVATVAISATLVVGIFIGTLLNGRVSAMRGFSFGASNAAPLALPDPIPSSNSFSTIVNRVEP
Ga0318519_1057331013300033290SoilMDEGRNGMVDWTRRRKMVAAGLIAATLTVGIMIGTLVSDRVSAMRSFSFSGTNAAALALPDPIP
Ga0326724_0050260_2873_30403300034091Peat SoilMDHVREMADWTRRRKIVVAGLVAATLIVGILIGTVISGKVSAMKALSFAGTNATPL


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