Metagenome / Metatranscriptome Family F085872

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085872
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	138 residues
Representative Sequence	MMRTLAAIAIAPLAVFPVLALLFGPWALAHGGTRSLAGILVPALIAAYPMVILFGLPMHLALVRQRCTRRRDYALAGVLLGAIPVAGYVLVAVAFDAKFEMAKLLPTLAKNAAWGAIGVVVFGVCSAAVAIAFRA
Number of Associated Samples	86
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	26.17 %
% of genes near scaffold ends (potentially truncated)	36.04 %
% of genes from short scaffolds (< 2000 bps)	75.68 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.82

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.865 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (16.216 % of family members)
Environment Ontology (ENVO)	Unclassified (28.829 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.946 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 74.85% β-sheet: 0.00% Coil/Unstructured: 25.15%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.82
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.82
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SCOP family	SCOP domain	Representative PDB	TM-score
a.130.1.0: automated matches	d4ppua_	4ppu	0.57515
a.130.1.2: Allosteric chorismate mutase	d5csma_	5csm	0.57195
a.89.1.1: Methyl-coenzyme M reductase alpha and beta chain C-terminal domain	d5a0ya2	5a0y	0.5507
e.28.1.1: Orbivirus core	d2btva_	2btv	0.53356
a.103.1.0: automated matches	d2p2wa_	2p2w	0.53091

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF00912	Transgly	27.03
PF13442	Cytochrome_CBB3	22.52
PF14026	DUF4242	6.31
PF02321	OEP	5.41
PF00294	PfkB	0.90
PF00005	ABC_tran	0.90
PF17092	PCB_OB	0.90
PF12704	MacB_PCD	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0744	Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase	Cell wall/membrane/envelope biogenesis [M]	27.03
COG4953	Membrane carboxypeptidase/penicillin-binding protein PbpC	Cell wall/membrane/envelope biogenesis [M]	27.03
COG5009	Membrane carboxypeptidase/penicillin-binding protein	Cell wall/membrane/envelope biogenesis [M]	27.03
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	10.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.86 %
Unclassified	root	N/A	35.14 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.86 %
Unclassified	root	N/A	35.14 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.86 %
Unclassified	root	N/A	35.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	32.43 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	27.03 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.70 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	26.13 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	2.70 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.90 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	26.13 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	2.70 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.90 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	26.13 %
Pseudoxanthomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas	2.70 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.90 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
unclassified Acidobacterium	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium	26.13 %
Pseudoxanthomonas winnipegensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → Pseudoxanthomonas winnipegensis	2.70 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.90 %
Roseomonas stagni	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas stagni	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Acidobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	26.13 %
Pseudoxanthomonas winnipegensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → Pseudoxanthomonas winnipegensis	2.70 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.90 %
Roseomonas stagni	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas stagni	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0470821	Not Available	549	Open in IMG/M
3300000956\|JGI10216J12902_108687106	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	845	Open in IMG/M
3300000956\|JGI10216J12902_125987158	Not Available	529	Open in IMG/M
3300004114\|Ga0062593_100095232	All Organisms → cellular organisms → Bacteria	2075	Open in IMG/M
3300004114\|Ga0062593_100278457	All Organisms → cellular organisms → Bacteria	1406	Open in IMG/M
3300004114\|Ga0062593_100329982	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1320	Open in IMG/M
3300004156\|Ga0062589_100260362	Not Available	1308	Open in IMG/M
3300004156\|Ga0062589_102328236	Not Available	551	Open in IMG/M
3300004157\|Ga0062590_100067661	All Organisms → cellular organisms → Bacteria	2091	Open in IMG/M
3300004480\|Ga0062592_100604556	Not Available	933	Open in IMG/M
3300004778\|Ga0062383_10004246	All Organisms → cellular organisms → Bacteria	4304	Open in IMG/M
3300004779\|Ga0062380_10014370	All Organisms → cellular organisms → Bacteria	2251	Open in IMG/M
3300005093\|Ga0062594_100200191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1391	Open in IMG/M
3300005093\|Ga0062594_102210885	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	595	Open in IMG/M
3300005331\|Ga0070670_100882799	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300005336\|Ga0070680_100029702	All Organisms → cellular organisms → Bacteria	4389	Open in IMG/M
3300005341\|Ga0070691_10360484	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300005364\|Ga0070673_102023147	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	547	Open in IMG/M
3300005438\|Ga0070701_10008933	All Organisms → cellular organisms → Bacteria	4363	Open in IMG/M
3300005456\|Ga0070678_101550547	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300005543\|Ga0070672_100526556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1024	Open in IMG/M
3300005546\|Ga0070696_101730646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas stagni	539	Open in IMG/M
3300005549\|Ga0070704_100260981	Not Available	1427	Open in IMG/M
3300005549\|Ga0070704_100483458	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300006030\|Ga0075470_10198384	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	575	Open in IMG/M
3300006051\|Ga0075364_10132431	All Organisms → cellular organisms → Bacteria → Proteobacteria	1674	Open in IMG/M
3300006196\|Ga0075422_10327298	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	663	Open in IMG/M
3300006576\|Ga0074047_11780090	Not Available	563	Open in IMG/M
3300006854\|Ga0075425_100190018	All Organisms → cellular organisms → Bacteria	2359	Open in IMG/M
3300006871\|Ga0075434_100231070	All Organisms → cellular organisms → Bacteria	1869	Open in IMG/M
3300006871\|Ga0075434_101419928	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300006969\|Ga0075419_10041486	All Organisms → cellular organisms → Bacteria	2879	Open in IMG/M
3300007094\|Ga0102532_1154511	All Organisms → cellular organisms → Bacteria	1571	Open in IMG/M
3300009094\|Ga0111539_10001852	All Organisms → cellular organisms → Bacteria	28133	Open in IMG/M
3300009094\|Ga0111539_10078680	All Organisms → cellular organisms → Bacteria	3878	Open in IMG/M
3300009094\|Ga0111539_11390311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → Pseudoxanthomonas winnipegensis	814	Open in IMG/M
3300009094\|Ga0111539_12722476	Not Available	573	Open in IMG/M
3300009147\|Ga0114129_11380347	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	870	Open in IMG/M
3300009156\|Ga0111538_10254656	All Organisms → cellular organisms → Bacteria	2222	Open in IMG/M
3300009156\|Ga0111538_10927558	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300009156\|Ga0111538_12114778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → Pseudoxanthomonas winnipegensis	707	Open in IMG/M
3300009162\|Ga0075423_10938200	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	918	Open in IMG/M
3300009177\|Ga0105248_12648357	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	572	Open in IMG/M
3300009789\|Ga0126307_11290159	Not Available	591	Open in IMG/M
3300010045\|Ga0126311_11748910	Not Available	526	Open in IMG/M
3300010403\|Ga0134123_13334709	Not Available	518	Open in IMG/M
3300011402\|Ga0137356_1009683	All Organisms → cellular organisms → Bacteria → Acidobacteria	1674	Open in IMG/M
3300011413\|Ga0137333_1102012	Not Available	665	Open in IMG/M
3300012038\|Ga0137431_1175158	Not Available	610	Open in IMG/M
3300012212\|Ga0150985_119777307	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1293	Open in IMG/M
3300012682\|Ga0136611_10000288	All Organisms → cellular organisms → Bacteria → Acidobacteria	32098	Open in IMG/M
3300012909\|Ga0157290_10045777	Not Available	1106	Open in IMG/M
3300012909\|Ga0157290_10080401	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	919	Open in IMG/M
3300013306\|Ga0163162_11790082	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	702	Open in IMG/M
3300014326\|Ga0157380_10054250	All Organisms → cellular organisms → Bacteria	3180	Open in IMG/M
3300014326\|Ga0157380_10844064	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	937	Open in IMG/M
3300014745\|Ga0157377_10551623	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	814	Open in IMG/M
3300014876\|Ga0180064_1038749	Not Available	939	Open in IMG/M
3300015077\|Ga0173483_10994053	Not Available	502	Open in IMG/M
3300015257\|Ga0180067_1104704	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	641	Open in IMG/M
3300015371\|Ga0132258_10073158	All Organisms → cellular organisms → Bacteria → Acidobacteria	7956	Open in IMG/M
3300015371\|Ga0132258_12268904	Not Available	1362	Open in IMG/M
3300015371\|Ga0132258_12767584	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1222	Open in IMG/M
3300015372\|Ga0132256_100013779	All Organisms → cellular organisms → Bacteria	7059	Open in IMG/M
3300018067\|Ga0184611_1199982	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	710	Open in IMG/M
3300018067\|Ga0184611_1231281	Not Available	657	Open in IMG/M
3300018067\|Ga0184611_1290492	Not Available	570	Open in IMG/M
3300018067\|Ga0184611_1351921	Not Available	505	Open in IMG/M
3300018081\|Ga0184625_10310334	Not Available	823	Open in IMG/M
3300018083\|Ga0184628_10304607	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	837	Open in IMG/M
3300018429\|Ga0190272_11371026	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300018476\|Ga0190274_10145713	All Organisms → cellular organisms → Bacteria	1988	Open in IMG/M
3300018476\|Ga0190274_10822435	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300018476\|Ga0190274_11180985	Not Available	848	Open in IMG/M
3300018481\|Ga0190271_10233976	All Organisms → cellular organisms → Bacteria → Acidobacteria	1858	Open in IMG/M
3300019356\|Ga0173481_10312097	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	736	Open in IMG/M
3300019767\|Ga0190267_11549728	Not Available	514	Open in IMG/M
3300019884\|Ga0193741_1176297	Not Available	515	Open in IMG/M
3300020003\|Ga0193739_1089717	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	779	Open in IMG/M
3300020020\|Ga0193738_1165162	Not Available	578	Open in IMG/M
3300020215\|Ga0196963_10051399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → Pseudoxanthomonas winnipegensis	1720	Open in IMG/M
3300021339\|Ga0193706_1122345	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	708	Open in IMG/M
(restricted) 3300023208\|Ga0233424_10033462	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	2488	Open in IMG/M
3300023275\|Ga0247776_10342590	Not Available	552	Open in IMG/M
3300025635\|Ga0208147_1052681	Not Available	1039	Open in IMG/M
3300025893\|Ga0207682_10091406	All Organisms → cellular organisms → Bacteria	1320	Open in IMG/M
3300025937\|Ga0207669_10719754	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	822	Open in IMG/M
3300026075\|Ga0207708_10844157	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	790	Open in IMG/M
3300026118\|Ga0207675_101906428	Not Available	613	Open in IMG/M
3300026142\|Ga0207698_10377472	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1347	Open in IMG/M
3300027840\|Ga0209683_10021510	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	2686	Open in IMG/M
3300027843\|Ga0209798_10041019	All Organisms → cellular organisms → Bacteria → Acidobacteria	2437	Open in IMG/M
3300027907\|Ga0207428_10008449	All Organisms → cellular organisms → Bacteria	9295	Open in IMG/M
3300027907\|Ga0207428_10018644	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	5924	Open in IMG/M
3300028007\|Ga0247718_1003151	All Organisms → cellular organisms → Bacteria	4988	Open in IMG/M
3300028719\|Ga0307301_10274666	Not Available	552	Open in IMG/M
3300028782\|Ga0307306_10214559	Not Available	554	Open in IMG/M
3300028802\|Ga0307503_10784073	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	543	Open in IMG/M
3300031562\|Ga0310886_10010173	All Organisms → cellular organisms → Bacteria	3426	Open in IMG/M
3300031562\|Ga0310886_10208106	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1071	Open in IMG/M
3300031903\|Ga0307407_11141442	Not Available	607	Open in IMG/M
3300031908\|Ga0310900_11597971	Not Available	552	Open in IMG/M
3300031908\|Ga0310900_11904033	Not Available	507	Open in IMG/M
3300032012\|Ga0310902_10179412	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1225	Open in IMG/M
3300032013\|Ga0310906_10020993	All Organisms → cellular organisms → Bacteria → Acidobacteria	2789	Open in IMG/M
3300034149\|Ga0364929_0102479	Not Available	903	Open in IMG/M
3300034149\|Ga0364929_0104893	Not Available	893	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	65.77%
Host-Associated	Host-Associated	34.23%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	47.75%
Plants	Host-Associated → Plants	34.23%
Aquatic	Environmental → Aquatic	18.02%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.05%
Rhizosphere	Host-Associated → Plants → Rhizosphere	25.23%
Sediment	Environmental → Aquatic → Sediment	9.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.11%
Freshwater	Environmental → Aquatic → Freshwater	6.31%
Marine	Environmental → Aquatic → Marine	1.80%
Floodplain	Environmental → Terrestrial → Floodplain	1.80%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.90%
Roots	Host-Associated → Plants → Roots	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.91%
Loam	Environmental → Terrestrial → Soil → Loam	7.21%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.31%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.60%
Lake	Environmental → Aquatic → Freshwater → Lake	1.80%
Coastal	Environmental → Aquatic → Marine → Coastal	1.80%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.80%
Ice	Environmental → Aquatic → Freshwater → Ice	0.90%
Sand	Environmental → Terrestrial → Soil → Sand	0.90%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.90%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.90%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.11%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.21%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.31%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.60%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.70%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	1.80%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.90%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.90%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.22%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	14.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	8.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.31%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.41%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	4.50%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	3.60%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.70%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.70%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.80%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.80%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.80%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.90%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.90%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.90%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.90%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.90%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.90%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300004779	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006030	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA	Environmental	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007094	Freshwater lake microbial communities from Singapore - a non-axenic Oscillatoriales culture (M13A)	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011402	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT830_2	Environmental	Open in IMG/M
3300011413	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT231_2	Environmental	Open in IMG/M
3300012038	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT800_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012682	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ223 (23.06)	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014876	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200_16_10D	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015257	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231_16_10D	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019884	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300020020	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1	Environmental	Open in IMG/M
3300020215	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_5	Environmental	Open in IMG/M
3300021339	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c1	Environmental	Open in IMG/M
3300023208 (restricted)	Freshwater microbial communities from Lake Towuti, South Sulawesi, Indonesia - Watercolumn_Towuti2014_125_MG	Environmental	Open in IMG/M
3300023275	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L199-509C-5	Environmental	Open in IMG/M
3300025635	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027840	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh (SPAdes)	Environmental	Open in IMG/M
3300027843	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028007	Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-1-E_D	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_04708211	3300000033	Soil	MRTLAAIAIAPLAVIPVLVVLFGPWAIAHGGTRSLTGIVVPAIVVAYPMVVLFGLPMHLALVRAGCARRRDYAITGVLLGAVPVAGYVXVAVAFEAKFAIAAMGPAXLXNAEWGAIGVMV
JGI10216J12902_1086871062	3300000956	Soil	MLTFGMMRTLAAIAIAPLAVFPVLALLFGPWALAHGGTRSLAGILVPALIAAYPMVILFGLPMHFALVRQRCTRWRDYAVAGVLLGAVPVAGYVLVAVAFDAKFEMARLLPTLAQNATWGAIGIAVFGICSAAVAIAFRAMAFPSGSR*
JGI10216J12902_1259871581	3300000956	Soil	MTRTLAAIAAAPLAVIPVLLVLFGPWALSHGGARSLSGILVPSLVVAYPMVILFGVPMHLALVNQGFTRRRDYAIAGILLGAVPVVGYYSVAVVFEARFLPAAIPAAAVRNLEWGGIGVVVFGLCSAAIAIAFRTIA
Ga0062593_1000952323	3300004114	Soil	MRTVAAIVVAPLAVIPILAVLFGPWALAHGGARSLAGILLPGVAVAYPLLVLFGLPMHLALARQGYIRARDYAVAGALLGAIPVSGYVIVAVMFEAKFALSAMPMALARNFEWGAIGVLVFGVCGGTMAWVFRLLA*
Ga0062593_1002784571	3300004114	Soil	MMRTLAAIAIAPLAVFPVLALLFGPWALAHGGTRSLAGILVPALIAAYPMVILFGLPMHLALVRQRCTRRRDYALAGVLLGAIPVAGYVLVAVAFDAKFEMAKLLPTLAKNAAWGAIGVVVFGVCSAAVAIAFRA
Ga0062593_1003299823	3300004114	Soil	MRTVAAIVVAPLAVIPTLSVLFGPWALAHGGARSLFGILMPAVIVAYPLLILFGLPMHLALTREGYTRARHYAVAGALLGAIPVIGYVIVAVMFEAKFALAAMPMAAARNFEWGAIGVLVFGLCSTAVALTFRATASPS*
Ga0062589_1002603622	3300004156	Soil	MMRTLAAIAIAPLAVFPVLALLFGPWALAHGGTRSLAGILVPALIAAYPMVILFGLPMHLALVRQRCTRRRDYALAGVLLGAIPVAGYVLVAVAFDAKFEVAKLLPTLAKNAAWGAIGVVVFGVCSAAVAIAFRAIVFRRPGNLTA*
Ga0062589_1023282361	3300004156	Soil	MTRTLAALVIAPLAVVPVLAALFGPWALTNGGMRSLMGILGPALVVAYPATIFFGLPMHLALVRQHCTRWRDYALTGMLLGAVPVAGYVLVAVMFDAKFEIAAMGSTFAKNATWGTIGVM
Ga0062590_1000676612	3300004157	Soil	MRTLAAIAIAPLAVVPVLTVLFGPWTIAHGGRASYLGIVGPALFVSYVMVIIAGLPMHWALTWQRRTRVRDYAIAGALLGAVPVVGYVIVAVAFEAKFAVSAMPRAFARNLEWGAIGVVVFGICAMTIAIAFRAISVPKASPSGFH*
Ga0062592_1006045562	3300004480	Soil	MRTLAAIAIAPLAVFPVLALLFGPWALAHGGTRSLAGILVPALIAAYPMVILFGLPMHLALVRQRCTRRRDYALAGVLLGAIPVAGYVLVAVAFDAKFEVAKLLPTLAKNAAWGAIGVVVFGVCSAAVAIAFRAIVFRRPGNLTA*
Ga0062383_100042464	3300004778	Wetland Sediment	MTTLAAIAIAPLAAVPVLTLLFGPWALAHGGVRSLAGIVWPALVVAYPMVMLFGVPMHLALVQQRCTRWRDYAIAGTLLGAVPVIGYFFVAVVFEAQFLPAAIPSAAVRNLEWGAIGVGVFGLCSAAIAIAFRTIAIRPAPD*
Ga0062380_100143702	3300004779	Wetland Sediment	MTTLAAIAIAPLAAVPVLTLLFGPWALAHGGVRSLAGIVWPALVVAYPMVMLFGVPMHLALVQQRCTRWRDYAIAGTLLGAVPVIGYYFVAVVFEAQFLPAAIPSAAVRNLEWGAIGVGVFGLCSAAIAIAFRTIAIRPAPD*
Ga0062594_1002001912	3300005093	Soil	MTRTLAALVIAPLAVVPVLAALFGPWALTNGGMRSLMGILGPALVVAYPATIFFGLPMHLALVRQHCTRWRDYALTGMLLGAVPVAGYVLVAVMFDAKFEIAAMGSTFAKNATWGTIGVMVFGLCSAAVAIAFRATASPSGSR*
Ga0062594_1022108851	3300005093	Soil	VTRTLAALAVAPLAVVPVLSVLFGPWALAHGGLRSWLGIIEPAIVVAYVTVILIGLPMHLALVRARCTRRRDYAITGVLLGAVPVAGYVLVAVAFEAKFVITDIGPAFVRNATWGTIGVAVFGLCSAAIALAFQAIALPTAFPSGSR*
Ga0070676_106028481	3300005328	Miscanthus Rhizosphere	MTRTLAALVIAPLAVVPVLAALFGPWALTNGGMRSLMGILGPALVVAYPATIFFGLPMHLALVRQHCTRWRDYALTGMLLGAVPVAGYVLVAVMFDAKFEIAAMGSTFAKNA
Ga0070670_1008827991	3300005331	Switchgrass Rhizosphere	MRTVAAILIAPLAVIPILTVLFGPWALAHGGARSLAGIVMPAAIVAYALLILFGLPMHFALVRQGYTRRRDYAVAGALLGAVPVIGYVIVAVVFEAKFVLSAIPLAAARNAEWGAVGVLVFGLCGSAIALGFRLIAEA*
Ga0070680_1000297024	3300005336	Corn Rhizosphere	MRTLAAIAIAPLAVIPVLVVLFGPWAIAHGGTRALTGIVVPAIVVAYPMVVLFGLPMHLALVRAGGTRWRDYAITGVLLGAVPVAGYVVVAVAFEAKFAIAAMGPAFLRNAEWGAIGVMVFGLCSAAIAIAFRAIAIRRDDLTT*
Ga0070691_103604841	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLAAIAIAPLAVFPGLALLFGSWALTHGGTRSLAGILVPAIVAAYPMVILFGLPMHLALVRQRCTRWRDYAAAGVLLGAVPVAGYVLVAVAFDAKFDVAKLLPTLVKNATWGAIGVVVFGLCSAAVAIAFRAIAMAFPSGSR*
Ga0070673_1020231472	3300005364	Switchgrass Rhizosphere	AMRTVAAIVVAPLAVIPTLSVLFGPWALAHGGARSLFGILMPAVIVAYPLLILFGLPMHLALTREGYTRARHYAVAGALLGAIPVIGYVIVAVMFEAKFALAAMPMAAARNFEWGAIGVLVFGLCSTAVALTFRATASPS*
Ga0070701_100089333	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLAAIAIAPLAVFPILALLFGPWALTHGGTRSLAGILVPAIVAAYPMVILFGLPMHLALVRQRCTRWRDYAAAGVLLGAVPVAGYVLVAVAFDAKFDVAKLLPTLVKNATWGAIGVVVFGLCSAAVAIAFRAIAMAFPSGSR*
Ga0070694_1003389242	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLAAIVIAPLAVVPVLTVLFGPWTIAHGGRASYLGIIGPALFVSYVMVLIAGLPMHWALTWQRRTRIRDYAIAGALLGAVPVIGYVIVAVAFEAKFAVSAMPRAFARNLEWGA
Ga0070678_1015505472	3300005456	Miscanthus Rhizosphere	MTRTLAAIAAAPLAVIPVLLVLFGPWALSHGGARSLSGIIVPALVVAYPTLIVFGVPMHLALVHQRVTRRRDYAIAGILLGAVPVVGYYIVAVMFEAGFVPAAIPAAAVRNLEWGAIGVVVFGLCSAAIAIAFRTIAVPPATG*
Ga0070672_1005265562	3300005543	Miscanthus Rhizosphere	MTRTVAALLIAPLAVVPVLAVLFGPWALANGGTRSLMGILGPALVVAYPATILFGFPMHLALVRQHYTRWRDYALTGVLLGAVPVAGYVLVAVMFDAKFDLAAMGSTLVKNATWGGIGV
Ga0070696_1017306461	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLAAIAIAPLAVVPVLTVLFGPWTIAHGGRASYLGIIGPALFVSYVMVLIAGLPMHWALTWQRRTRVRDYAIAGALLGAVPVIGYVIVAVVFEAKFAVSAMPRAFARNLEWGAIGVVVFGMCAMTIAIAFRAIIRLRADATTRQAF*
Ga0070704_1002609813	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLAAIAIAPLAVFPVLALLFGPWALTHGGTRSLAGILVPAIVAAYPMVILFGLPMHLALVRQRCTRWRDYAAAGVLLGAVPVAGYVLVAVAFDAKFDVAKLLPTLVKNATWGAIGVVVFGLC
Ga0070704_1004834581	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLAAIVIAPLAVVPVLTVVFGPWTIAHGGRASYLGIIGPALFVSYVMVLIAGLPMHWALTWQRRTRVRDYAIAGALLGAVPVIGYVIVAVVFEAKFAVSAMPRAFARNLEWGAIGVVVFGMCAMTIAIAFRAIIRL
Ga0068861_1024213821	3300005719	Switchgrass Rhizosphere	MTRTLAALVIAPLAVVPVLAALFGPWALTNGGMRSLMGILGPALVVAYPATIFFGLPMHLALVRQHCTRWRDYALTGMLLGAVPVAGYVLVAVMFDAKFEIAAMGSTFAKNAT
Ga0075470_101983842	3300006030	Aqueous	MRTIAALAIAPLAVVPVLAALFGPWALSHGGMRSLAGIIGPGLLIAYPLLILFGYPMHLALVRARCTRPRDYAIAGALLGGVPIIGYVVVAVAFEARFALSAMGAALLSNLEWGAIGVLVFGLCGTAIAVVYRATVFPSGSR*
Ga0075364_101324313	3300006051	Populus Endosphere	MTRTLAAIALAPLAVIPVVVLLFGPWALAHGGRTSLFGIVLPALAIGYPLTLLFGLPMHLALVQQRVTRLRDYALAGALLGAVPVIGYVIVAIVFEARFTLAAIPRATARNIEWGAIGVVVFGTCSTAVAVAFRSIVRAFPSGSR*
Ga0075422_103272981	3300006196	Populus Rhizosphere	MMRTLAAIAIAPLAVFPVLALLFGPWALAHGGTRSLAGILVPALIAAYPMVILFGLPMHVALVRQRCTRWRDYAVAGVLLGAVPVAGYVLVAVAFDAKFEMARLLPTLAQNATWGAIGIAVFGICSAAVAIAFRAMAFPSGSR*
Ga0074047_117800901	3300006576	Soil	MTRTLAALVIAPLAVVPVLTVLFGPWALAHGGTRSLIGILGPALVVAYPATVLFGLPMHLALVRQRCTRWRDYALTGVLLGAVPVAGYVLVAVMFDAKFEIAAMGPTLAKNATWGGIGVLVFGLCSAAVAAAFRALAFR
Ga0075425_1001900182	3300006854	Populus Rhizosphere	MRTLTATAIAPLAVVPVLTVLFGPWTIAHGGVRSWLGIVEPALVVAYTLLVLAGLPVHWALTSQRRTRLRDYAIAGALLGAVPVIGYVIVAVAFEARFTVGGLTRALARNLEWGAIGVVVFGICATAIAVTFRQALRLFHHDGAERVFVDR*
Ga0075434_1002310702	3300006871	Populus Rhizosphere	MRTLAAIAIAPLAVVPVLTVLFGPWTIAHGGARSYLGIVGPALFVSYAMVLIAGLPMHWALTWQQRTRLRDYAIAGALLGAVPVIGYVIVAVAFEAKFAVSAMPRAFARNLEWGAIGVVVFGICAMTIAIAFRAIIRLRADAMAREAF*
Ga0075434_1014199281	3300006871	Populus Rhizosphere	PLAVVPVLTVLFGPWTIAHGGVRSWLGIVEPALVVAYTLLVLAGLPVHWALTSQRRTRLRDYAIAGALLGAVPVIGYVIVAVAFEARFTVGGLTRALARNLEWGAIGVVVFGMCSAAVAIVFRAIAAGPLAR*
Ga0075419_100414863	3300006969	Populus Rhizosphere	MRTLAAIVIAPLAVVPVLTVLFGPWTIAHGGRASYLGIIGPALFVSYVMVLIAGLPMHWALTWQRRTRVRDYAIAGALLGAVPVIGYVIVAVAFEAKFAISAMPRALARNLEWGAIGVVVFGICAMTIAIAFRAIIRLRADAAARQAF*
Ga0102532_11545113	3300007094	Freshwater Lake	MRTIAAIAIAPLAVVPVLAALFGPWAMSNGGMPSLAGIIGPGLAIAYPLLIVFGYPMHLALVRARCTRPRDYAIAGGLLGGVPILGYVLVAVAFEAKFVVTAMGAALIRNATWGAIGVLVFGLCGTAIAVVYRATVFPSGSR*
Ga0111539_1000185220	3300009094	Populus Rhizosphere	MLPVGMMRTLAAIAIAPLAVFPVLALLFGPWALAHGGTRSLAGILVPALIAAYPMVILFGLPMHFALVRQRCTRWRDYAVAGVLLGAVPVAGYVLVAVAFDAKFEMARLLPTLAQNATWGAIGIAVFGICSAAVAIAFRAMAFPSGSR*
Ga0111539_100786803	3300009094	Populus Rhizosphere	MRTLAAIAIAPLAVIPVLVVLFGPWAITHGGTRALTGIVVPAMVVAYPMVVLFGLPMHLALVRAGCMRWRDYAITGVLLGAVPVAGYVVVAVAFEAKFAIVSMGPALVRNAEWGAIGVMVFGLCSAAVAIAFRAIATAFPSGSR*
Ga0111539_113903111	3300009094	Populus Rhizosphere	MRTVAAIAIAPLAVFPVLALVFGPWALAHGGTRSLAGILVPALVAAYPMVILFGLPMHFALVRQRCTRWRDYAVAGVLLGAVPVAGYVLVAVAFDAKFEVAALLPTLAKNATWGAIGVVVFGVCSAAVAIA
Ga0111539_127224762	3300009094	Populus Rhizosphere	VTRTLAALAVAPLAVVPVLSVLFGPWALAHGGLRSWLGIIEPAIVVAYVTVILIGLPMHLALVRARCTRRRDYAITGVLLGAVPVAGYVLVAVAFEAKFVITDIGPAFVRNATWGTIGVAVFGLCSAAIALAFQA
Ga0114129_113803472	3300009147	Populus Rhizosphere	MRTLAAIVIAPLAVVPVLTVIFGPWTIAHGGAPSYLGIVGPALIVSYVMVLLAGLPMHWALTWQRRTRVRDYAIAGALLGAVPVIGYVIVAVAFEARFAVSAMPRAFARNLEWGAIGVVVFGICAMTIAITFRAITFPKASPSGFH*
Ga0111538_102546563	3300009156	Populus Rhizosphere	MTRTLAAIAIAPLAVVPVLAVLFGPWALTTGGTRSLMGILGPALVVTYPATVLFGLPMHLALVRQRCTRWRDYAITGALLGAVPVAGYLLVAVMFDAQFQIAAMASTLAKNAMWGGIGVLVFGVCSAAVAITFRALAVGSDNLTA*
Ga0111538_109275581	3300009156	Populus Rhizosphere	VTRTLAALAVAPLAVVPVLSVLFGPWALAHGGLRSWLGIIEPAIVVAYVTVILIGLPMHLALVRARCTRRSDYAITGVLLGAVPVAGYVLVAVAFEAKFVITDIGPAFVRNATWGTIGV
Ga0111538_121147782	3300009156	Populus Rhizosphere	MRTVAAIAIAPLAVFPVLALVFGPWALAHGGTRSLAGILVPALVAAYPMVILFGLPMHFALVRQRCTRWRDYAVAGVLLGAVPVAGYVLVAVAFDAKFEVAALLPTLAKNATWGAIGVVVFGVCSAAVAIAFRAIVRLRQGSGETGS*
Ga0075423_109382002	3300009162	Populus Rhizosphere	MMRTLAAIAIAPLAVVPVLTVLFGPWTIAHGGRASYLGIVGPALFVSYVMVLIAGLPMHWALTWQQRTRVRDYAIAGALLGAVPVIGYVIVAVAFEAKFAVSAMPRAFARNLEWGAIGVVVFGICAMTIAIAFRAISVPKASPSGFH*
Ga0105248_126483572	3300009177	Switchgrass Rhizosphere	FGPWALAHGGARSLAGIVMPAAIVAYALLILFGLPMHFALVRQGYTRRRDYAVAGALLGAVPVIGYVIVAVVFEAKFVLSAIPLAAARNAEWGAIGVLVFGLCGSAIALGFRLIAEA*
Ga0126307_112901592	3300009789	Serpentine Soil	MRTLAAIAIAPLAVLPVLSLMFGPWALGHGGLRLLLGILLPGIVVAYALVILAGIPMHVALVRQRRTRMRDYALAGLLLGAVPVIGYVIVAVMFEAQFAPAAVPRAAARNIEWGAMGVLVFGACSTAVAVAFGATVSPSGSR*
Ga0126311_117489101	3300010045	Serpentine Soil	MRTLAAIAIAPLAVLPVLSLMFGPWALAHGGLRALLGILLPAIAVAYALVILAGLPMHLAMVRQRRTRTRDYALAGLLLGAAPVIGYVIVAVMFEAQFVLSALPRAAARNLEWGAIGVLV
Ga0134123_133347091	3300010403	Terrestrial Soil	MTRTLAAIAIAPLAVFPVLALLFGPWALAHGGTRSLAGIVVPALVAAYPMVILFGLPMHVVLLRQRRTRWRDYAITGVLLGAVPVAGYVLVAVAFDAKFEVAQLLPTLAKNATWGAIGVVVFGVCSAAVAIAF
Ga0137356_10096832	3300011402	Soil	MTRTLAAIAIAPLAVFPVLALLFGPWALAHGGTRSLVGILVPALVAAYPMVILFGLPLHLALVRQRCTRWRDYALAGVLLGAVPVAGYVLVAVAFDAKFEVTKLLPTLAKNATWGAIGVVVFGVCSAAVAIAFRAIALRAFPSGSR*
Ga0137333_11020121	3300011413	Soil	MTRMLAAIAIAPLAVFPVLALLFGPWALAHGGTRSLAGILLPAIVAAYPMVILFGLPMHLALVRQRCTRWRDYAVAGVLLGAIPVAGYVLVAVAFDAKFEVTKLLPTLAKNATWGAIGVMVFGICSAAVAMAFRAIV
Ga0137431_11751582	3300012038	Soil	MRTLAAIAIAPLAVIPVLIVLFGPWAIAHGGTRSLTGIVVPAIVVAYPMVVLFGLPMHLALVRAGCARLRDYAITGMLLGAVPVAGYVVVAVAFEAKFAIAAMGPAFVRNAEWGAIGVVVFGLCSATVAIAFRAIAIRRDDLTA*
Ga0150985_1197773073	3300012212	Avena Fatua Rhizosphere	MRTVAAIALAPLAIVPVLAIAFGPWAVAHGGTRSLAGILLPALILAYPLVVLAGVPMHMALVRHRYTRVADYAVTGALLGAVPVIGYLLVAIAFEAKFTPREIPHATARNLEWGGIGVLVFAACSTAVAMAFRAIARAGRS*
Ga0136611_1000028824	3300012682	Polar Desert Sand	MRVLAAIAIAPLAVLPILTLMFGPWAMAHGGWRSLLGILGPAIVVAYPLVLVVGLPMHLLLVRQRRTRPRDYALASALLGTVPVLGYVIVAVAFEARFVTSALPLAAARNLEWGAIGVVVFGVCSLAVGMTFRAIAQVTAFPSRSR*
Ga0157290_100457771	3300012909	Soil	MRTLAAIAIAPLAVIPVLVVLFGPWAIAHGGARSLTGIVVPAIVVAYPMVVLFGLPMHLALVRAGCARRRDYAITGVLLGAVPVAGYVVVAVAFEAKFAIGAMGPAFLRNAEWGAIGVM
Ga0157290_100804013	3300012909	Soil	MMRTLAAIVNAPLAVFPVLALLFGPWALAHGGTRSLAGILVPALIAAYPMVILFGLPMHVALVRQRCTRWRDYAVAGVLLGAVPVAGYVLVAVAFDAKFEMARLLPTLAQNATWGAIGIAVFGICSAAVAIAFRAMAFPSGSR*
Ga0163162_117900821	3300013306	Switchgrass Rhizosphere	PLAVIPTLSVLFGPWALAHGGARSLFGILMPAVIVAYPLLILFGLPMHLALTREGYTRARHYAVAGALLGAIPVIGYVIVAVMFEAKFALAAMPMAAARNFEWGAIGVLVFGLCSTAVALTFRATASPS*
Ga0157380_100542504	3300014326	Switchgrass Rhizosphere	MMRTLAAIAIAPLAVFPVLALLFGPWALTHGGTRSLAGILVPAIVAAYPMVILFGLPMHLALVRQRCTRWRDYAAAGVLLGAVPVAGYVLVAVAFDAKFDVAKLLPTLVKNATWGAIGVVVFGLCCAAVAIAFRAIAMAFPSGSR*
Ga0157380_108440642	3300014326	Switchgrass Rhizosphere	MTRTLAAIAAAPLAVIPVLLVLFGPWALSHGGARSLSGILVPSLVVAYPMVILFGVPMHLALVNQGFTRRRDYAIAGILLGAVPVVGYYSVAVVFEARFLPAAIPAAAVRNLEWGGIGVVVFGLCSAAIAIAFRTIAIRPATG*
Ga0157377_105516232	3300014745	Miscanthus Rhizosphere	MMRTLAAIAIAPLAVVPVLTVLFGPWTIAHGGRASYLGIVGPALFVSYVMVIIAGLPMHWALTWQQRTRVRDYAIAGALLGAVPVVGYVIVAVAFEAKFAVSAMPRAFARNLEWGAIGVVVFGICAMTIAIAFRAISVPKASPSGFH*
Ga0180064_10387491	3300014876	Soil	MTRTLAAILIAPLAVVPVLALMFGPWALSRGGFTGLAGIIGPAVVVAYPLLILFGLPVHTALARQRFTRRSHYALAGALLGAVPVVGYCLVAIGFEAKFQLAAMGSALARNAEWGAIGVVVFGACSASVALVFRAIALNPRLASPSGSR*
Ga0173483_109940531	3300015077	Soil	IAPLAAVPVLALLFGPWAIAHGGSRSITGIILPALVVAYPMVILFGVPMHLVLVQQRVTGARASAIAGILLGAVPVIGYYVVAVAFEARFLPAAIPAAAIRNLEWGAIGVGVFGLCSAAIAMAFRTIAIGRVKAG*
Ga0180067_11047042	3300015257	Soil	AIAPLAVFPVLALLFGPWALAHGGTRSLAGILLPAIVAAYPMVILFGLPMHRALVRQRCTRWRDYAVAGVLLGAIPVAGYVLVAVAFDAKFEVTKLLPTLAKNATWGAIGVMVFGICSAAVAMAFRAIVFRRV*
Ga0132258_100731585	3300015371	Arabidopsis Rhizosphere	MTRTLPALLIAPLAVVPVLALLFGPWALANGGTRSLVGILGPALVVAYPATVLFGLPMHLALVRQRCTRWRDYALTGVLLGAVPVAGYVLVAVMFDAKFEMAAMGSTLAKNATWGTIGVLVFGLCSATIALAFRAIAIREDLTT*
Ga0132258_122689041	3300015371	Arabidopsis Rhizosphere	MTTLVAIAIAPLAAVPVLALLFGPWAVAHGGVRSLTGIIWPALAIAYPTLILFGVPMHFALVQQRVTGTRAYAFAGILLGAVPVIGYYFVAVAFEARFEPAAIPAAAVRNLEWGAIGVVVFGLCSAAIATAFRAIAIQTPKN*
Ga0132258_127675842	3300015371	Arabidopsis Rhizosphere	MRTIGAIVVAPLAVIPILAVMFGPWALAHGGARSLAGIVVPGVLAAYPLLILFGLPMHLALTRQGCVRARDYAVAGALLGAVPVIGYVIVAVMFEANFALAAMPVAFARNFEWGAIGVLVFGLCSTAVALTFRATASPS*
Ga0132256_1000137795	3300015372	Arabidopsis Rhizosphere	MTRTLPALLIAPLAVVPVLALLFGPWALANGGTRSLVGILGPALVVAYPATVLFGLPMHLALVRQRCTRWRDYALTGVLLGAVPVAGYVLVAVMFDAKFEMAAMGSTLAKNATWGTIGVLVFGLCSATIALAFRAIAIRKDLTT*
Ga0184611_11999822	3300018067	Groundwater Sediment	VLPVLALMFGPWAMAHGGWRSFLGILGPAIVVAYGLVLVVGVPMHLALVRQRQTRARDYALAGLLLGTVPVLGYVIVAVAFEAKFELTAMPMAAARNLEWGAIGVAVFGACSAAVAFTFRQIVFGPGALTP
Ga0184611_12312811	3300018067	Groundwater Sediment	MTRTLAAIAIAPLAVFPVLALLFGPWALAHGGTRSLAGIVVPALVAAYPMVILFGLPMHIALVRQRRTRWRDYAITGVLLGAVPVAGYVLVAVAFDAKFEVAQLLPTLAKNATWGAIGVMVFGVCSAAVALAFRAIVRLRQGSGETGS
Ga0184611_12904922	3300018067	Groundwater Sediment	MTRTLAAIAAAPLAVIPVLLVLFGPWALSHGGARSLSGILVPSLVVAYPMVILFGVPMHLALVHQRFTRKRDYAIAGILLGAVPVVGYYFVAVVFEARFVPAAIPAAAVRNLEWGGIGVVVFGLCSAAIAIAFRTIAIRPATG
Ga0184611_13519211	3300018067	Groundwater Sediment	MRMVAAIVVAPLAVIPILTALFGTWALAHGGAHSLAGILMPAVIVAYPLLILFGVPMHFALARQGYTRRRDYAVAGALLGAVPVIAYVVVAVAFEAKFVWSAIPLAAARNFEWGAIGALVFGVCGSAIALTFRMLAR
Ga0184625_103103341	3300018081	Groundwater Sediment	MPIMRTLAAIAIAPLAVIPVLVVLFGPWAIADGGTRSLTGIVVPAIVVAYPMVVLFGLPMHLALVRAGCARLRDYAITGVLLGAVPVAGYVVVAVASEAKFAIAAMGPAFVRNAEWG
Ga0184628_103046071	3300018083	Groundwater Sediment	MRTLAAIAIAPLAVIPVLVVLFGPWAIAHGGTRSLTGIVVPAIVVAYPMVVLFGLPMHLALVRGGCARLRDYAITGVLLGAVPVAGYVVVAVAFEAKFAIAAMGPAFVRNAEWGAIGVVVFGLCSAAVGFSIRIALSASLSVGRSDSPAGKLFSLSK
Ga0190272_113710262	3300018429	Soil	MTRTLAAIAIAPLAVLPMLTLMFGPWAMAHGGWRSLLGIVGPGIVMAYPLVLVVGLPMHLALVRQRCTRARDYALAGVLLGTVPVLVYVIVAVAFEARFVIAAMPRAAARNLEWGAIGVGVFGVCSVAVGMTFRAIAQVTASPSRSR
Ga0190274_101457132	3300018476	Soil	VTRTLAAIAIAPMAVVPVLATLFGTWAITTGGMPTLMGILGPALVVAYPATILFGLPMHLALVHQRCIKWRDYAITGALLGSVPVAGYVIVAVLFDAKFDIAAIGPTLAKNATWGAIGVLVFGACSTAVAIAFRAIVIRPDNLTTRLPANLPT
Ga0190274_108224353	3300018476	Soil	MTRTLAAIAIAPLAVIPVLAVLFGPWALAHGGTRSLAGILMPAVIAAYPMVILFGLPMHFALVRQRFTRRRDYALTGVLLGAVPVAGYVLVAVAFDAKFEVTQLLPTLAKNATWGAIGVVVFGLCSAA
Ga0190274_111809851	3300018476	Soil	MTRTLAAIAAAPLAVIPVLLVLFGPWALSHGGVWSLSGILVPALVVAYPMLILFGLPMHLVMSRQRVSRPRAYLTVGMLLGAVPVIGYYVVAVAFEARFVMALIPGAAIRNLEWGAIGAIVFGMCSAAVALAFRAIAVRRLRN
Ga0190271_102339764	3300018481	Soil	MRTLAAIAIAPLAVVPVLAVLFGPWAIAHGGTRSLTGILVPAVVVAYPMVVLFGLPMHLALVRQRYTRWRDYLIAGVLLGAVPVAGYVLVAVGFEAKFAIAAMGPALVRNAEWGAIGVVVFGLCSAAVALAFRAAVRLR
Ga0173481_103120971	3300019356	Soil	ALLIAPLAVVPVLAVLFGPWALANGGTRSLMGILGPALVVAYPATILFGFPMHLALVRQHYTRWRDYALTGVLLGAVPVAGYVLVAVMFDAKFDLAAMGSTLVKNATWGGIGVLVFGVCSAAVAIAFRATAFPSGSR
Ga0190267_115497281	3300019767	Soil	QHDDRSDHVGMTRVLAAIAIAPLAVIPVLMVMFGPWAIAHGGWRSMSGILLPALIVSYPLLLLAGLPMHFALVRQRYTRIRDYALAGALLGAVPVIGYVIVAVVFEAQFAASAIPRATARNFEWGAIGTVVFGACSTAVAIAFRRIVTASPS
Ga0193741_11762971	3300019884	Soil	PCQQGLAHRDDDRSHHLGVMRTLAAIAIAPLAVVPVLALLFGPWAMAHGGTRSLAGILTPAVIVAYPLLILFGLPMHLALVRQRCTRRRDYLIAGVLLGGVPVAGYVLVAVAFDAKFAIAAMGPALIRNAAWGAIGVVVFGLCSAAVAIAFRALVFPSGSR
Ga0193739_10897172	3300020003	Soil	MRTLAAIAIAPLAVIPVLVVLFGPWAIAHGGTRALTGIVVPAIVVAYPMVVLFGLPMHLALVRAGCMRWRDYAITGLLLGAVPVAGYVVVAVAFEAKFAIASMGSALVRNAEWGAIGVVVFGLCSAAVAIVFRAIAVGRDGLTA
Ga0193738_11651621	3300020020	Soil	MRTLAAIAIAPLAVIPVLVVLFGPWAIAHGGTRALTGIVVPAIVVAYPMVVLFGLPMHLALVRAGCMRWRDYAITGLLLGAVPVAGYVVVAVAFEAKFAIASMGSALVRNAEWGAIGVV
Ga0196963_100513992	3300020215	Soil	MRTLAAIAVAPLAVLPVLAVVFGPWAITHGGVKTWLGIAWPALVVAYPMVALFGVPMHLALVRARCTRARDYAITGALLGAVPVIGYVIVAVAFEAKFAVSAMGTAVVRNLTWGTIGVLVFGLCSVAIALTFRTVVLRPQMARPPDYPMA
Ga0193706_11223452	3300021339	Soil	VAHQHDDRPHHLRMTRTLAAIALAPLAVVPVLTLLFGPWAIAHGGWRSLLGILTPAIVVAYPLVVLVGLPMHLALVRQRCTRVRDYAITGVLLGAVPVIGYVIVAVAFEAQFVVAAAPRALARNIEWGAIGVLVFGACSTAVALVFRATVRLR
(restricted) Ga0233424_100334623	3300023208	Freshwater	MAFAPLAVIPVLTLLFGAWAVASGGLRSLTGILGPAVVAAYPLVILFGWPMHLALLRARCTRWRDYAMAGALLGTIPVLGYVIVAVMFEVKFALSQMGPAALRNVEWGAIGVAVFGVCGVAVALAFRATVFPSQSR
Ga0247776_103425902	3300023275	Plant Litter	MRTLAAIAIAPLAAVPVLALLFGPWAIAHGGSRSITGIILPALVVAYPMVILFGVPMHLVLVQQRVTGARAYAIAGILLGAVPVIGYYVVAVAFEARFLPAAIPAAAIRNLEWGAIG
Ga0208147_10526812	3300025635	Aqueous	MRTIAALAIAPLAVVPVLAALFGPWALSHGGMRSLAGIIGPGLLIAYPLLILFGYPMHLALVRARCTRPRDYAIAGALLGGVPIIGYVVVAVAFEARFALSAMGAALLSNLEWGAIGVLVFGLCGTAIAVVYRATVFPSGSR
Ga0207682_100914062	3300025893	Miscanthus Rhizosphere	MTRTLAALVIAPLAVVPVLAALFGPWALTNGGMRSLMGILGPALVVAYPATIFFGLPMHLALVRQHCTRWRDYALTGMLLGAVPVAGYVLVAVMFDAKFEIAAMGSTFAKNATWGTIGVMVFGLCSAAVAIAFRATASPSGSR
Ga0207669_107197541	3300025937	Miscanthus Rhizosphere	MRTLAAIAIAPLAVFPVLALLFGPWALTHGGTRSLAGILVPAIVAAYPMVILFGLPMHLALVRQRCTRWRDYAAAGVLLGAVPVAGYVLVAVAFDAKFDVAKLLPTLVKNATWGAIGVVVFGLCSAAVAIAFRAIAMAFPSGSR
Ga0207708_108441572	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MTRTLAALVIAPLAVVPVLAALFGPWALTNGGMRSLMGILGPALVVAYPATIFFGLPMHLALVRQHCTRWRDYALTGMLLGAVPVAGYVLVAVMFDAKFEIAAMGSTFAKNATWGTIGVMVFGLCSAAVANAFRATASPSGSR
Ga0207675_1019064282	3300026118	Switchgrass Rhizosphere	MTRTLAALVIAPLAVVPVLAALFGPWALTNGGMRSLMGILGPALVVAYPATIFFGLPMHLALVRQHCTRWRDYALTGMLLGAVPVAGYVLVAVMFDAKFEIAAMGSTFAKNATWGT
Ga0207698_103774722	3300026142	Corn Rhizosphere	MRTVAAIVVAPLAVIPILAALFGPWALAHGGAHSLAGILMPAVIVAYPLLILFGVPMHFALARQGYTRRRDYAVAGALLGAVPVMAYVVVAVAFEAKFVWSSIPLAAARNFEWGAIGALVFGVCGSAIALTFRMLARSAR
Ga0209683_100215104	3300027840	Wetland Sediment	MTTLAAIAIAPLAAVPVLTLLFGPWALAHGGVRSLAGIVWPALVVAYPMVMLFGVPMHLALVQQRCTRWRDYAIAGTLLGAVPVIGYFFVAVVFEAQFLPAAIPSAAVRNLEWGAIGVGVFGLCSAAIAIAFRTIAVRPATD
Ga0209798_100410191	3300027843	Wetland Sediment	MTTLAAIAIAPLAAVPVLTLLFGPWALAHGGVRSLAGIVWPALVVAYPMVMLFGVPMHLALVQQRCTRWRDYAIAGTLLGAVPVIGYFFVAVVFEAQFLPAAIPSAAVRNLEWGAIGVGVFGLCSAAIAIAFRTIAIRPAPD
Ga0207428_1000844910	3300027907	Populus Rhizosphere	MRTLAAIAIAPLAVIPVLVVLFGPWAITHGGTRALTGIVVPAMVVAYPMVVLFGLPMHLALVRAGCMRWRDYAITGVLLGAVPVAGYVVVAVAFEAKFAIVSMGPALVRNAEWGAIGVMVFGLCSAAVAIAFRAIATAFPSGSR
Ga0207428_100186448	3300027907	Populus Rhizosphere	MRTLAAIAIAPLAVFPVLALLFGPWALAHGGTRSLAGILVPALIAAYPMVILFGLPMHVALVRQRCTRWRDYAVAGVLLGAVPVAGYVLVAVAFDAKFEMARLLPTLAQNATWGAIGIAVFGICSAAVAIAFRAMAFPSGSR
Ga0247718_10031516	3300028007	Soil	MRNAAAIAIAPLAIIPVLAALFGPWAVSNGGLRSLLGIIGPALVVAYPMVILFGVPMHLALVRARCTRWRDYAIAGALLGTVPIIGYVLVAVAFEAQFALSAMGAALVRNLEWGAIGVLVFGLCTTAVALAYRRVALTT
Ga0307301_102746661	3300028719	Soil	MRMVAAIVVAPLAVIPILTALFGTWALAHGGAHSLAGVLMPAVIVAYPLLILFGVPMHFALARQGYTRRRDYAVAGALLGAVPVIAYVVVAVAFEAKFVLSAIPLAAARNFEWGAIGA
Ga0307306_102145591	3300028782	Soil	MRMVAAIVVAPLAVIPILTALFGTWALAHGGAHSLAGILMPAVIVAYPLLILFGVPMHFALARQGYTRRRDYAVAGALLGAVPVIAYVIVAVAFEAKFVWSAIPLAAARNFEWGAIGALVFGVCGSAIAL
Ga0307503_107840731	3300028802	Soil	ITNPAATEVFSRADMTRTLAAIAIAPLAVVPVLAVLFGPWALANGGTRSLIGIVGPALVVAYPATILFGFPMHLALVRQHCTRWRDYALTGMLLGAVPVAGYVLVAVMFDAKFEIAAMSSTLVKNATWGAIGVLVFGLCSAAVAIAFRATAFPSGSR
Ga0310886_100101731	3300031562	Soil	AALFGPWALTNGGMRSLMGILGPALVVAYPATIFFGLPMHLALVRQHCTRWRDYALTGMLLGAVPVAGYVLVAVMFDAKFEIAAMGSTFAKNATWGTIGVMVFGLCSAAVAIAFRATASPSGSR
Ga0310886_102081062	3300031562	Soil	MTRTLAAIVLAPLAVVPVLAVLFGPWALAHGGTRSLAGILMPAVIAAYPLTILFGLPMHLALVRHRSTRWRDYALVGVLLGAVPVAGYVLVAVMFDAKFEMAAMGSTLAKNATWGAIGVLVFGLCSAAVAIVFRAAAFPSGSR
Ga0307407_111414422	3300031903	Rhizosphere	MRTLAAVAIAPLTIIPILSILFGPWAYSHGGVRSWVGIIGPAIVVAYPMVLLFGVPMHYALVRARATRVRDYAVAGGLLGTVPVIGYVLVAIAFEAKFALPAMGAAVLRNLEWGAIGVV
Ga0310900_115979711	3300031908	Soil	MTRTLAAIAIAPLAVFPVLALLFGPWALTHGGTRSLAGILVPAIVAAYPMVILFGLPMHLALVRQRCTRWRDYAAAGGLLGAVPVAGYVLVAVTFDAKFDVAKLVPTLVKNATWGAIGVVVFGLCSAAVAIAFRAIAMAFPSGSR
Ga0310900_119040331	3300031908	Soil	ARSPTARSQTLPGLKYSFGLIMTRTLAAIVLAPLAVVPVLAVLFGPWALAHGGTRSLAGILMPAVIAAYPLTILFGLPMHLALVRHRSTRWRDYALVGVLLGAVPVAGYVLVAVMFDAKFEMAAMGSTLAKNATWGAIGVVVFGLCSGAVALAFRTLAFGRNDLTT
Ga0310884_103409312	3300031944	Soil	MTRTLAAIAIAPLAVVPVLAVLFGPWALTTGGTRSLMGILGPALVVTYPATVLFGLPMHLALVRQRCTRWRDYAITGALLGAVPVAGYLLVAVMFDAQFQIAAMASTLAKNAMWG
Ga0310902_101794122	3300032012	Soil	MRTLAAIAIAPLAVFPVLALLFGPWTLTHGGTQSLAGILVPAIVAAYPMVILFGLPMHLALVRQRCTRWRDYAAAGVLLGAVPVAGYVLVAVAFDAKFDVAKLLPTLVKNATWGAIGVVVFGLCSAAVAIAFRAIAMAFPSGSR
Ga0310906_100209931	3300032013	Soil	MTRTLAALVIAPLAVVPVLAALFGPWALTNGGMRSLMGILGPALVVAYPATIFFGLPMHLALVRQHCTRWRDYALTGMLLGAVPVAGYVLVAVMFDAKFEIAAMGSTFAKNATWGTIGVMVFGLCSAAV
Ga0364929_0102479_544_903	3300034149	Sediment	MRTLAAIAIAPLAVIPVLVVLFGPWAIAHGGTRSLTGIVVPAIVVAYPMVVLFGLPMHLALVRGGCARLRDYAITGVLLGAVPVAGYVVVAVAFEAKFAIAAMGPAFVRNAEWGAIGVVV
Ga0364929_0104893_394_834	3300034149	Sediment	MTRTLAAIAIAPLAVLPVLALLFGPWALAHGGTRSLAGIVVPALVAAYPMVILFGLPMHVALVRQRRTRWRDYAITGVLLGAVPVAGYVLVAVAFDAKFEVAQLLPTLAKNTTWGAIGVVVFGVCSAAVAIAFRAIVFRRPDNLTA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters