Metagenome / Metatranscriptome Family F085842

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F085842
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	89 residues
Representative Sequence	MKSENRKVQMTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQGQSGDVETNGNTALRVESTIRLS
Number of Associated Samples	92
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	76.36 %
% of genes near scaffold ends (potentially truncated)	24.32 %
% of genes from short scaffolds (< 2000 bps)	81.98 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (58.559 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (16.216 % of family members)
Environment Ontology (ENVO)	Unclassified (44.144 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (65.766 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 51.67% β-sheet: 0.00% Coil/Unstructured: 48.33%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF04964	Flp_Fap	17.12
PF01478	Peptidase_A24	9.91
PF02163	Peptidase_M50	6.31
PF02954	HTH_8	5.41
PF16976	RcpC	3.60
PF07811	TadE	2.70
PF13629	T2SS-T3SS_pil_N	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	17.12

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
All Organisms	root	All Organisms	41.44 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
cellular organisms	root	All Organisms → cellular organisms	41.44 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.54 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.81 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	5.41 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.60 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.70 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	1.80 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Marinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae	1.80 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Marinobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter	1.80 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Marinobacter lipolyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter lipolyticus	1.80 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Marinobacter lipolyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter lipolyticus	1.80 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Marinobacter lipolyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter lipolyticus	1.80 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Marinobacter lipolyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter lipolyticus	1.80 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Marinobacter lipolyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter lipolyticus	1.80 %
eudicotyledons	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Marinobacter lipolyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter lipolyticus	1.80 %
Gunneridae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Marinobacter lipolyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter lipolyticus	1.80 %
Pentapetalae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Marinobacter lipolyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter lipolyticus	1.80 %
rosids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Marinobacter lipolyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter lipolyticus	1.80 %
fabids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Marinobacter lipolyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter lipolyticus	1.80 %
Malpighiales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Marinobacter lipolyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter lipolyticus	1.80 %
Euphorbiaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Euphorbiaceae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Marinobacter lipolyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter lipolyticus	1.80 %
Acalyphoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Euphorbiaceae → Acalyphoideae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Marinobacter lipolyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter lipolyticus	1.80 %
Acalypheae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Euphorbiaceae → Acalyphoideae → Acalypheae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Marinobacter lipolyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter lipolyticus	1.80 %
Ricinus	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Euphorbiaceae → Acalyphoideae → Acalypheae → Ricinus	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Marinobacter lipolyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter lipolyticus	1.80 %
Ricinus communis	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Euphorbiaceae → Acalyphoideae → Acalypheae → Ricinus → Ricinus communis	0.90 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16822882	All Organisms → cellular organisms → Bacteria → Proteobacteria	5899	Open in IMG/M
2228664022\|INPgaii200_c1195943	All Organisms → cellular organisms → Bacteria	5070	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101230847	Not Available	661	Open in IMG/M
3300000559\|F14TC_101596045	All Organisms → cellular organisms → Bacteria	3601	Open in IMG/M
3300000956\|JGI10216J12902_100244679	Not Available	1056	Open in IMG/M
3300003570\|Ga0007418J51697_1049161	Not Available	657	Open in IMG/M
3300003570\|Ga0007418J51697_1066862	Not Available	595	Open in IMG/M
3300004114\|Ga0062593_100313879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1345	Open in IMG/M
3300004480\|Ga0062592_101694976	Not Available	614	Open in IMG/M
3300004798\|Ga0058859_11618895	Not Available	717	Open in IMG/M
3300004798\|Ga0058859_11655144	Not Available	514	Open in IMG/M
3300004798\|Ga0058859_11806537	Not Available	777	Open in IMG/M
3300005093\|Ga0062594_100343672	Not Available	1167	Open in IMG/M
3300005289\|Ga0065704_10743333	Not Available	545	Open in IMG/M
3300005294\|Ga0065705_10007658	All Organisms → cellular organisms → Bacteria → Proteobacteria	3509	Open in IMG/M
3300005331\|Ga0070670_100510982	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300005334\|Ga0068869_100243411	All Organisms → cellular organisms → Bacteria	1434	Open in IMG/M
3300005339\|Ga0070660_101082503	Not Available	678	Open in IMG/M
3300005343\|Ga0070687_100357352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter lipolyticus	944	Open in IMG/M
3300005343\|Ga0070687_101341900	Not Available	532	Open in IMG/M
3300005355\|Ga0070671_100013825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6513	Open in IMG/M
3300005364\|Ga0070673_100195201	All Organisms → cellular organisms → Bacteria	1741	Open in IMG/M
3300005438\|Ga0070701_10669873	Not Available	695	Open in IMG/M
3300005440\|Ga0070705_101237426	Not Available	616	Open in IMG/M
3300005444\|Ga0070694_101424698	Not Available	585	Open in IMG/M
3300005456\|Ga0070678_100403156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → Marinobacter lipolyticus	1189	Open in IMG/M
3300005459\|Ga0068867_100368966	Not Available	1203	Open in IMG/M
3300005468\|Ga0070707_101336028	Not Available	683	Open in IMG/M
3300005543\|Ga0070672_100019630	All Organisms → cellular organisms → Bacteria → Proteobacteria	4909	Open in IMG/M
3300005548\|Ga0070665_101706682	Not Available	637	Open in IMG/M
3300005577\|Ga0068857_100415855	All Organisms → cellular organisms → Bacteria	1253	Open in IMG/M
3300005578\|Ga0068854_100361851	All Organisms → cellular organisms → Bacteria	1190	Open in IMG/M
3300005578\|Ga0068854_100755959	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300005616\|Ga0068852_101839905	Not Available	628	Open in IMG/M
3300005618\|Ga0068864_100013757	All Organisms → cellular organisms → Bacteria → Proteobacteria	6711	Open in IMG/M
3300005618\|Ga0068864_100219529	All Organisms → cellular organisms → Bacteria	1754	Open in IMG/M
3300005842\|Ga0068858_100977096	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300005842\|Ga0068858_101741827	Not Available	615	Open in IMG/M
3300005843\|Ga0068860_100172002	All Organisms → cellular organisms → Bacteria → Proteobacteria	2092	Open in IMG/M
3300005844\|Ga0068862_100035620	All Organisms → cellular organisms → Bacteria → Proteobacteria	4216	Open in IMG/M
3300005937\|Ga0081455_10538141	Not Available	775	Open in IMG/M
3300006237\|Ga0097621_100293048	All Organisms → cellular organisms → Bacteria	1435	Open in IMG/M
3300006854\|Ga0075425_101161972	Not Available	878	Open in IMG/M
3300006871\|Ga0075434_100662563	Not Available	1062	Open in IMG/M
3300009094\|Ga0111539_10106098	All Organisms → cellular organisms → Bacteria	3296	Open in IMG/M
3300009101\|Ga0105247_11508102	Not Available	548	Open in IMG/M
3300009148\|Ga0105243_10018878	All Organisms → cellular organisms → Bacteria	5228	Open in IMG/M
3300009156\|Ga0111538_11600001	Not Available	821	Open in IMG/M
3300009168\|Ga0105104_10333381	Not Available	837	Open in IMG/M
3300010037\|Ga0126304_10023486	All Organisms → cellular organisms → Bacteria	3554	Open in IMG/M
3300010146\|Ga0126320_1074496	Not Available	721	Open in IMG/M
3300010147\|Ga0126319_1358729	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1111	Open in IMG/M
3300010147\|Ga0126319_1572607	All Organisms → cellular organisms → Bacteria → Acidobacteria	1094	Open in IMG/M
3300011332\|Ga0126317_10389494	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300011332\|Ga0126317_10983368	Not Available	637	Open in IMG/M
3300012022\|Ga0120191_10026653	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300012212\|Ga0150985_107234269	All Organisms → cellular organisms → Bacteria	1994	Open in IMG/M
3300012212\|Ga0150985_119329922	Not Available	732	Open in IMG/M
3300012212\|Ga0150985_121667090	Not Available	657	Open in IMG/M
3300012469\|Ga0150984_108724824	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Euphorbiaceae → Acalyphoideae → Acalypheae → Ricinus → Ricinus communis	1033	Open in IMG/M
3300012469\|Ga0150984_112747058	Not Available	606	Open in IMG/M
3300012469\|Ga0150984_118683041	Not Available	679	Open in IMG/M
3300012508\|Ga0157315_1049342	Not Available	560	Open in IMG/M
3300012903\|Ga0157289_10342263	Not Available	543	Open in IMG/M
3300013296\|Ga0157374_10940884	Not Available	882	Open in IMG/M
3300014325\|Ga0163163_10018569	All Organisms → cellular organisms → Bacteria	6514	Open in IMG/M
3300014326\|Ga0157380_10243042	All Organisms → cellular organisms → Bacteria	1624	Open in IMG/M
3300014969\|Ga0157376_10014211	All Organisms → cellular organisms → Bacteria	5968	Open in IMG/M
3300015371\|Ga0132258_11777597	All Organisms → cellular organisms → Bacteria	1554	Open in IMG/M
3300025271\|Ga0207666_1041293	Not Available	722	Open in IMG/M
3300025315\|Ga0207697_10006521	All Organisms → cellular organisms → Bacteria	5270	Open in IMG/M
3300025901\|Ga0207688_10103427	All Organisms → cellular organisms → Bacteria	1647	Open in IMG/M
3300025903\|Ga0207680_10198061	All Organisms → cellular organisms → Bacteria → Acidobacteria	1367	Open in IMG/M
3300025908\|Ga0207643_10083741	All Organisms → cellular organisms → Bacteria → Acidobacteria	1851	Open in IMG/M
3300025911\|Ga0207654_10207306	Not Available	1294	Open in IMG/M
3300025920\|Ga0207649_10992231	Not Available	661	Open in IMG/M
3300025923\|Ga0207681_10699175	Not Available	843	Open in IMG/M
3300025923\|Ga0207681_11040962	Not Available	687	Open in IMG/M
3300025925\|Ga0207650_10161664	All Organisms → cellular organisms → Bacteria	1775	Open in IMG/M
3300025931\|Ga0207644_10011332	All Organisms → cellular organisms → Bacteria → Proteobacteria	5898	Open in IMG/M
3300025937\|Ga0207669_11131407	Not Available	662	Open in IMG/M
3300025940\|Ga0207691_10453411	Not Available	1091	Open in IMG/M
3300025945\|Ga0207679_10357980	All Organisms → cellular organisms → Bacteria	1274	Open in IMG/M
3300025960\|Ga0207651_10106855	All Organisms → cellular organisms → Bacteria	2090	Open in IMG/M
3300025981\|Ga0207640_10034325	All Organisms → cellular organisms → Bacteria	3165	Open in IMG/M
3300026095\|Ga0207676_10187425	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1817	Open in IMG/M
3300026121\|Ga0207683_10040456	All Organisms → cellular organisms → Bacteria → Proteobacteria	4068	Open in IMG/M
3300027907\|Ga0207428_10645704	Not Available	760	Open in IMG/M
3300028379\|Ga0268266_11686552	Not Available	609	Open in IMG/M
3300031226\|Ga0307497_10389453	Not Available	663	Open in IMG/M
3300031231\|Ga0170824_106590070	Not Available	515	Open in IMG/M
3300031469\|Ga0170819_10872629	Not Available	828	Open in IMG/M
3300031538\|Ga0310888_10919694	Not Available	547	Open in IMG/M
3300031854\|Ga0310904_11087625	Not Available	573	Open in IMG/M
3300031858\|Ga0310892_11228898	Not Available	535	Open in IMG/M
3300032012\|Ga0310902_11278881	Not Available	519	Open in IMG/M
3300034479\|Ga0314785_021906	Not Available	527	Open in IMG/M
3300034480\|Ga0314789_008034	Not Available	824	Open in IMG/M
3300034659\|Ga0314780_039924	Not Available	899	Open in IMG/M
3300034659\|Ga0314780_143727	Not Available	582	Open in IMG/M
3300034659\|Ga0314780_186650	Not Available	533	Open in IMG/M
3300034661\|Ga0314782_144998	Not Available	577	Open in IMG/M
3300034663\|Ga0314784_094119	Not Available	616	Open in IMG/M
3300034663\|Ga0314784_102843	Not Available	597	Open in IMG/M
3300034665\|Ga0314787_075765	Not Available	591	Open in IMG/M
3300034666\|Ga0314788_175178	Not Available	539	Open in IMG/M
3300034670\|Ga0314795_014278	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1128	Open in IMG/M
3300034670\|Ga0314795_044728	Not Available	766	Open in IMG/M
3300034670\|Ga0314795_109465	Not Available	563	Open in IMG/M
3300034671\|Ga0314796_136353	Not Available	562	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	57.66%
Environmental	Environmental	42.34%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	54.95%
Terrestrial	Environmental → Terrestrial	36.94%
Aquatic	Environmental → Aquatic	5.41%
Human	Host-Associated → Human	2.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	36.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	25.23%
Freshwater	Environmental → Aquatic → Freshwater	5.41%
Digestive System	Host-Associated → Human → Digestive System	2.70%
Roots	Host-Associated → Plants → Roots	1.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	18.02%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	17.12%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.91%
Loam	Environmental → Terrestrial → Soil → Loam	7.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.31%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	4.50%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	2.70%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.80%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.80%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	18.02%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	17.12%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	16.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.31%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	5.41%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	4.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.60%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.70%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	2.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.80%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	16.22%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	9.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.31%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	4.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.50%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	4.50%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.50%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.70%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	2.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.70%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.80%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.90%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.90%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003570	Grassland soil microbial communities from Hopland, California, USA - Sample H2_Bulk_34 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010146	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012022	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300025271	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes)	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300034479	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034480	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034659	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034661	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034663	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034665	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034666	Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034670	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034671	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_01199090	2088090014	Soil	MTLLGVVLATPFLVIASVVGAHITSLADNVRVDVLCVVLALLSIAVKILNGHFALRNKTEQVQSGDVGANGNTDLRGESTISLSC
INPgaii200_11959433	2228664022	Soil	MESVNRKVQMTLLGVVLATPFLVIASVVGAHITSLADNVRVDVLCVVLALLSIAVKILNGHFALRNKTEQVQSGDVGANGNTDLRGESTISLSC
INPhiseqgaiiFebDRAFT_1012308471	3300000364	Soil	MTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQGQCGDVETNGXTALRVESTXRLS*
F14TC_1015960455	3300000559	Soil	MESVNRKVQMTLLGVVLATPFLVIASVVGAHITSVADNVRVDVLCVVLALLSIAVKILNEHFTLRRKTEQVQSGDVGANGNTDLRGESTISLSC*
JGI10216J12902_1002446791	3300000956	Soil	MDSGNRKVQMTLLGIVLAAPFLVVASVVGAHITSLADNVRVDVLCVALALVSIAVQIVNRHFALLSNTEQVQGSEVGANGNTDLRGESTITLSC*
Ga0007418J51697_10491611	3300003570	Avena Fatua Rhizosphere	MKSVNRNFQMTLLGVVLATPFLVVASVIGAHITSLADNVRVDVLCVALASVSIGAKIIDGLVLRGKTEQLGSAVESNGNTDLRGESTISLSC*
Ga0007418J51697_10668621	3300003570	Avena Fatua Rhizosphere	MKSENRKVQMTLLGVILATPFLVIASVVGAHITTLADNVRVDLLCVALASVSITLKILDGRFSVKSKTEYAKHGYVEPEVDTDLRGESNISFSC*
Ga0062593_1003138794	3300004114	Soil	MTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRDRTEHGQCGDVETNGNTALRVESTIRLS*
Ga0062592_1016949762	3300004480	Soil	MTLLGVVVTTPFLVLASVVGAHMTSLADNVRVDILCVAIAFVSIAMKMFDGLAFRGRTEQGQSGDVETNGNTALRVESTTRL
Ga0058859_116188951	3300004798	Host-Associated	PSRHWLSTKQLWTKLMKRVNPKIQMTLLGVVLATPFLVLASVVGAHITSLADNVRVDVLCIALALVSIAVRMTEGRSFQGKTEPVQSNETEPVGDTDLRGKSTIGLSC*
Ga0058859_116551441	3300004798	Host-Associated	MKSVNPKVQMTLLGVVLATPFLVLASVVAAHITSLADSVRVDVLCVALASVSIAVRIADGRSLQGKTEQVQSSDVESSGDTDLRGKSTISLSC*
Ga0058859_118065371	3300004798	Host-Associated	MTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQGQCGDVETNGNTALRVESTTRLS*
Ga0062594_1003436722	3300005093	Soil	MTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQEQCGDVETNGNTALRVESTTRLS*
Ga0065704_107433331	3300005289	Switchgrass Rhizosphere	MTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMFDGLAFRGRTEEGQSGDVETNGNTALRVESTSRLS*
Ga0065705_100076586	3300005294	Switchgrass Rhizosphere	MTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMFDGLAFRGRTEQGQSGDVETNGNTALRVESTSRLS*
Ga0070670_1005109821	3300005331	Switchgrass Rhizosphere	MTLLGVVLATPFLVLASVVGAHISSLADNMRVDILCVALAFVSIAIQIVDGLARRCNTEQAQSSKVEHNGNTDLRGESPLSLSC*
Ga0068869_1002434111	3300005334	Miscanthus Rhizosphere	HKQYWTRLMKSVNPKVQMTLLGVVLATPFLVLASVVAAHITSLADSVRVDVLCVALASVSIAVRIADGRSLQGKTEQVQSSDVESSGDTDLRGKSTISLSC*
Ga0070660_1010825032	3300005339	Corn Rhizosphere	KVQMTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQEQCGDVETNGNTALRVESTTRLS*
Ga0070687_1003573521	3300005343	Switchgrass Rhizosphere	ENRKVQMTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQEQCGDVETNGNTALRVESTTRLS*
Ga0070687_1013419001	3300005343	Switchgrass Rhizosphere	MTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRDRTEHGQCGDVETNGNTALRVESSIRLS*
Ga0070671_1000138252	3300005355	Switchgrass Rhizosphere	MKSVNRKFQMTLLGVVLATPFLVIASVIGAHITALADNVRVDVLCVALASVSIAVKIFDGLALRGKTEQLQGSTVETNGNTDLRGKSTISLSC*
Ga0070673_1001952013	3300005364	Switchgrass Rhizosphere	MKSGNRKVQTTLLGVLLATPFLVIASVVSAHITSLADNVRVDVLCASLAIVSIAVRILDGRLTLGSKPEYAKHGHVEPEGNTDLRGESNISLSC*
Ga0070701_106698732	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQGKCGDVETNGNTALRVESTTRLS*
Ga0070705_1012374261	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	QYWTRLMKSVNPKVQMTLLGVVLATPFLVLASVVAAHITSLADSVRVDVLCVALASVSIAVRIADGRSLQGKTEQVQSSDVESSGDTDLRGKSTISLSC*
Ga0070700_1000178386	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQEQCGDVETNGNTALRVESTTRLS*
Ga0070694_1014246981	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRDRTEHGQCGDVETNGNTALRVESTIRL
Ga0070678_1004031561	3300005456	Miscanthus Rhizosphere	MTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQEQCGDVETNGKTALRVESTTRLS*
Ga0068867_1003689661	3300005459	Miscanthus Rhizosphere	MKRVNPKIQMTLLGVVLATPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQEQCGDVETNGNTALRVESTTRLS*
Ga0070707_1013360281	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQGKCGDVETNGNTALR
Ga0070672_1000196306	3300005543	Miscanthus Rhizosphere	MKSENRKVQMTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQEQCGDVETNGKTALRVESTTRLS*
Ga0070665_1017066821	3300005548	Switchgrass Rhizosphere	SRHWLSTKQLWTKLMKRVNPKIQMTLLGVVLATPFLVLASVVGAHITSLADNVRVDVLCIALALVSIAVRMTEGRSFQGKTEPVQSNETEPVGDTDLRGKSTIGLSC*
Ga0068857_1004158552	3300005577	Corn Rhizosphere	MKSENRKVQMTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQGQSGDVETNGNTALRVESTIRLS*
Ga0068854_1003618511	3300005578	Corn Rhizosphere	MTLLGVVLATPFLVLASVVAAHITSLADSVRVDVLCVALASVSIAVRIADGRSLQGKTEQVQSSDVESSGDTDLRGKSTISL
Ga0068854_1007559591	3300005578	Corn Rhizosphere	MTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRDRTEHGQCGDVETNGNTALR
Ga0068852_1018399051	3300005616	Corn Rhizosphere	ATPFLVLASVVAAHITSLADSVRVDVLCVALASVSIAVRIADGRSLQGKTEQVQSSDVESSGDTDLRGKSTISLSC*
Ga0068864_1000137576	3300005618	Switchgrass Rhizosphere	MKSENRKVQMTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQEQCGDVETNGNTALRVESTTRLS*
Ga0068864_1002195295	3300005618	Switchgrass Rhizosphere	GPSAGRTPSRHWLSTKQLWTKLMKRVNPKIQMTLLGVVLATPFLVLASVVGAHITSLADNVRVDVLCIALALVSIAVRMTEGRSFQGKTEPVQSNETEPVGDTDLRGKSTIGLSC*
Ga0068858_1009770962	3300005842	Switchgrass Rhizosphere	MKSVNPKVQMTLLGVVLATPFLVLASVVAAHITSLADSVRVDVLCVALASVSIAVRIADGRSLQGKTEQVQSSDVESSGDTD
Ga0068858_1017418271	3300005842	Switchgrass Rhizosphere	MKSGNRKVQTTLLGVLLATPFLVIASVVSAHITSLADNVRVDVLCASLAIVSIAVRILDGRLTLGSKPEYAKHGHVEPE
Ga0068860_1001720021	3300005843	Switchgrass Rhizosphere	MKSENRKVQMTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQGKCGDVETNGNTALRVESTTRLS*
Ga0068862_1000356206	3300005844	Switchgrass Rhizosphere	MKSENRKVQMTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRDRTEHGQCGDVETNGNTALRVESTIRLS*
Ga0081455_105381412	3300005937	Tabebuia Heterophylla Rhizosphere	MTLLGVVLATPFLVLASVVGAHITSLADNVRVDLLCVALASVSTAMKIFDGLALRGSTEQGQGGNVETNGNTDLRGESPLSLNC*
Ga0097621_1002930481	3300006237	Miscanthus Rhizosphere	MESVNRKVQMTLLGVVLATPFLVIASVVGAHITSLADNVRVDVLCVVLALVSIAVKILNGHFTLWSKTEQVQSGDVGANGNTDLRGESTISLRC*
Ga0075425_1011619721	3300006854	Populus Rhizosphere	MDSGNRKLQMTLLGIVLAAPFLVVASVVGAHITSLADNVRVDVLCVALALVSIAVQIVNRHFALLSNTEQVQGSEVGANGNTDLRGESTITLSC*
Ga0075434_1006625631	3300006871	Populus Rhizosphere	MDSGNRKLQMTLLGIVLAAPFLVVASVVGAHITSLADNVRVDVLCVALALVSIAVQIVNRHFALLSNTEQVQGSKVGANGNTDLRGESTITLSC*
Ga0111539_101060985	3300009094	Populus Rhizosphere	MKSENRKIQMTLLGVVVTTPFLVLASVVGAHMTSLADNVRVDILCVAIAFVSIAMKMVDGLAFRGRTEQGQSGDVETNGNTALRVESTTRLS*
Ga0105247_115081021	3300009101	Switchgrass Rhizosphere	LLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQEQCGDVETNGNTALRVESTTRLS*
Ga0105243_100188784	3300009148	Miscanthus Rhizosphere	MKSENRKVQMTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRDRTEHGQCGDVETNGNTALRVESTTRLS*
Ga0111538_116000011	3300009156	Populus Rhizosphere	MKSENRKVQMTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRDRTEHGQCSDVETNGNTALRVESSIRLS*
Ga0105104_103333812	3300009168	Freshwater Sediment	MKSVNRKVQMTLLGVVLATPFLVLASVIGAHITSLADNVRVDVLCVALASVSIAMKIVDGLALRGSTEQVQGGDVETNGNTDLRGDSPISLSC*
Ga0126304_100234864	3300010037	Serpentine Soil	MKSVNPKVQLTLLGVVIATPFLVIASVVGAHITSLADNVRVDVLCVALACVSIAVKVVEGHFALRSKTEKAKRGDVEPKGSTDLRGESAIRLSW*
Ga0126320_10744962	3300010146	Soil	MKSENRKVQMTLLGVLLATPFLVIASVVGAHITSLADNVRVDVLCVALAFVSIAVKIFEGRFVVRTKTEYAKHGYVEPEVNTNLRGESNSSLSW*
Ga0126319_13587291	3300010147	Soil	MDTVNRKVQMTLLGVVLATPFLVVASVVGAHITSLADNVRVDVLCVALALVSIAVQIVNRHFALQSKTVRVESSNVGANGHNDLSEESSINLSC*
Ga0126319_15726074	3300010147	Soil	MKSENRKVQMTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQGQCGDVETNGNTALRVESTTRLS*
Ga0126317_103894941	3300011332	Soil	MKSANRKVQMTLLGVVLATPFLVIASVVSAHITSLADNVRVDALCVSLALVSIAARILDGHFAQRSKTEYAKLGHVEPQGNADLQGESNVRLSC*
Ga0126317_109833681	3300011332	Soil	MKSENRKVQMTLLGVLLATPFLVIASVVGAHITSLADNVRVDVLCVALAFVSIAVKIFEGRFVVRSKTEYAKHGYVEPEVNTNLRGESHSSLSW*
Ga0120191_100266532	3300012022	Terrestrial	MKSGNRKVQMMLLGVVLATPFLVLASVVAAHITSLADSVRVDVLCVALAFVSIATKIVDGLALRGSTEQVHGGDVETNGNTDLRGESPISLSC*
Ga0150985_1072342691	3300012212	Avena Fatua Rhizosphere	MTLLGVVLATPFLVVASVIGAHITSLADNVRVDVLCVALASVSIGAKIIDGLVLRGKTEQLGSAVESNGNTDLRGESTISLSC*
Ga0150985_1193299221	3300012212	Avena Fatua Rhizosphere	MKSVNRNFQMTLLGVVLATPFLVIASVIGAHITSLADNVRVDVLCVALAAVSIAVKILDGLAFRSKTEWLQGSAVESNGNTDLRGESTISLSC*
Ga0150985_1216670901	3300012212	Avena Fatua Rhizosphere	MKSVNRKFQMTLLGVVLATPFLVIASVIGAHITSLADNVRVDVLCVALASVSIAVKIFDGLALRGKTEQLQGSTVETNGNTNLRGESTISLSC*
Ga0150984_1087248243	3300012469	Avena Fatua Rhizosphere	MKSENRKVQMTLLGVILATPFLVIASVVGAHITTLADNVRVDLLCVALASVSITLKILDGRFSVKGKTEYAKHGYVEPEVDTDLRGESNISFSC*
Ga0150984_1127470582	3300012469	Avena Fatua Rhizosphere	MKSENRKVQMTLLRVLLATPFLVIASVVGAHITSLADNVRVDVLCVALAFVSIAVKIFDGRFFVRTKTEYAKHGYVEPEVNTNLRGESNSSLSW*
Ga0150984_1186830412	3300012469	Avena Fatua Rhizosphere	MKSVNRNFQMTLLGVVLATPFLVIASVIGAHITSLADNVRVDVLCVALAAVSIAVKILDGLAFRSKTEWLQGSAVECNGNTDLRGESTISLSC*
Ga0157315_10493422	3300012508	Arabidopsis Rhizosphere	MESVNRKVQMTLLGVVLATPFLVVASVVGAHITSLADNVRVDVLWVVLALVSIAVKILNGHFSLQSKTEQVQSGEVGANGNTDLRGESTISLSC*
Ga0157289_103422632	3300012903	Soil	ASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRDRTEHGQCGDVETNGNTALRVESTIRLS*
Ga0157374_109408842	3300013296	Miscanthus Rhizosphere	MESVNRKVQMTLLGVVLATPFLVIASVVGAHITSLADNVRVDVLCVILALLSIAVKILNGHFTLRSKTEQVQSGDVGANGNTDLRGESTFSLSC*
Ga0163163_100185698	3300014325	Switchgrass Rhizosphere	MKRVNPKIQMTLLGVVLATPFLVLASVVGAHITSLADNVRVDVLCVALALVSIAVRMTEGRSFRGKTEPVQSNETEPVGDTDLRGKSTIGLSC*
Ga0157380_102430423	3300014326	Switchgrass Rhizosphere	MKSENRKIQMTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQGQCGDVETNGNTALRVESTTRLS*
Ga0157376_100142116	3300014969	Miscanthus Rhizosphere	MKSETRKVQMTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQEQCGDVETNGNTALRVESTTRLS*
Ga0132258_117775972	3300015371	Arabidopsis Rhizosphere	MKSGNRKVQTTLLGVLLATPFLVIASVVSAHITSLADNVRVDVLCASLAIVSIAVRILDGRLTLRSKPEYAKHGHVEPEGNTDLRGESNISLSC*
Ga0207666_10412931	3300025271	Corn, Switchgrass And Miscanthus Rhizosphere	MTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQEQCGDVETNGNTALRVESTTRLS
Ga0207697_100065214	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRDRTEHGQCGDVETNGNTALRVESTIRLS
Ga0207688_101034272	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MKSENRKVQMTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRDRTEHGQCGDVETNGNTALRVESTIRLS
Ga0207680_101980611	3300025903	Switchgrass Rhizosphere	MKSENRKVQMTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQEQCGDVETNGKTALRVESTTRLS
Ga0207643_100837411	3300025908	Miscanthus Rhizosphere	MKSENRKVQMTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQGQCGDVETNGNTALRVESTTRLS
Ga0207654_102073063	3300025911	Corn Rhizosphere	MKSENRKVQMTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQEQCGDVETNGNTALRVESTTRLS
Ga0207649_109922311	3300025920	Corn Rhizosphere	TLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRDRTEHGQCGDVETNGNTALRVESTIRLS
Ga0207681_106991752	3300025923	Switchgrass Rhizosphere	MKSVNPKVQMTLLGVVLATPFLVLASVVAAHITSLADSVRVDVLCVALASVSIAVRIADGRSLQGKTEQVQSSDVESSGDTDLRGKSTISLSC
Ga0207681_110409621	3300025923	Switchgrass Rhizosphere	MKSGNRKVQTTLLGVLLATPFLVIASVVSAHITSLADNVRVDVLCASLAIVSIAVRILDGRLTLGSKPEYAKHGHVEPEGNTDL
Ga0207650_101616643	3300025925	Switchgrass Rhizosphere	MKSVNRKIQMTLLGVVLATPFLVLASVVGAHISSLADNMRVDILCVALAFVSIAIQIVDGLARRCNTEQAQSSKVEHNGNTDLRGESPLSLSC
Ga0207644_100113322	3300025931	Switchgrass Rhizosphere	MKSVNRKFQMTLLGVVLATPFLVIASVIGAHITALADNVRVDVLCVALASVSIAVKIFDGLALRGKTEQLQGSTVETNGNTDLRGKSTISLSC
Ga0207669_111314071	3300025937	Miscanthus Rhizosphere	MTLLGVVLATPFLVLASVVAAHITSLADNVRVDVLCVAIAFVSIAMKIVDGLAFRGRTEQGQCGDLETNGNTALRVESTTRLS
Ga0207691_104534113	3300025940	Miscanthus Rhizosphere	MKSGNRKVQTTLLGVLLATPFLVIASVVSAHITSLADNVRVDVLCASLAIVSIAVRILDGRLTLGSKPEYAKHGHVEPEGNTDLRGESNISLSC
Ga0207679_103579801	3300025945	Corn Rhizosphere	MTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQEQCGDVETNG
Ga0207651_101068551	3300025960	Switchgrass Rhizosphere	QITLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQEQCGDVETNGKTALRVESTTRLS
Ga0207640_100343251	3300025981	Corn Rhizosphere	MTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRDRTEHGQCGDVETNGNTALRVES
Ga0207676_101874251	3300026095	Switchgrass Rhizosphere	MESVNRKVQMTLLGVVLATPFLVIASVVGAHITSLADNVRVDVLCVILALLSIAVKILNGHFTLRSKTEQVQSGDVGANGNTDLRGESTFSLSC
Ga0207683_100404563	3300026121	Miscanthus Rhizosphere	MKSVNPKVQMTLLGVVLATPFLVLASVVAAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQGKCGDVETNGNTALRVESTTRLS
Ga0207428_106457041	3300027907	Populus Rhizosphere	MTLLGVVVTTPFLVLASVVGAHMTSLADNVRVDILCVAIAFVSIAMKMVDGLAFRGRTEQGQSGDVETNGNTALRVESTTRLS
Ga0268266_116865522	3300028379	Switchgrass Rhizosphere	WTKLMKRVNPKIQMTLLGVVLATPFLVLASVVGAHITSLADNMRVDVLCIALALVSIAVRMTEGRSFQGKTEPVQSNETEPVGDTDLRGKSTIGLSC
Ga0307497_103894531	3300031226	Soil	GWTRLMKSENRKVQMTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFISIAMKMVDGLAFRGRTEQGQCGDVETNGNTALRVESTTRLS
Ga0170824_1065900701	3300031231	Forest Soil	MESVNRKVQLTLLGVVLATPFLVIASVVGAHITSLADNVRVDVLCVVLALVSIAVKILNGHFTLWSKTEQVQSGDVGANGNTDLRGESTISLSC
Ga0170819_108726291	3300031469	Forest Soil	MESVNRKVQMTLLGVVLATPFLVIASVVGAHITSLADNVRVDVLCVVLALVSIAVKILNGHFTLWSKTEQVQSGDVGANGNTDLRGESTISLSC
Ga0310888_109196941	3300031538	Soil	MKSENRKIQMTLLGVVVTTPFLVLASVVGAHMTSLADNVRVDILCVAIAFVSIAMKMVDGLAFRGRTEQEQCGDVETNGNTALRVESTTRLS
Ga0310904_110876251	3300031854	Soil	MTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVALAFASIAIKIVDGLALPGRTEHGQGGDVEPNDNTALRVESTFRLR
Ga0310892_112288981	3300031858	Soil	MTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVALAFVSIAIKIVDGLALPGRTEHGQGGDVEPNDNTALRVESTFRLR
Ga0310902_112788811	3300032012	Soil	MTLLGVVVTTPFLVLASVVGAHMTSLADNVRVDILCVAIAFVSIAMKMVDGLAFRGRTEQGQSGDVETNGNTA
Ga0314785_021906_204_482	3300034479	Soil	MKSENRKIQMTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQGQSGDVETNGNTALRVESTTRLS
Ga0314789_008034_45_323	3300034480	Soil	MKSENRKIQMTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQEQCGDVETNGNTALRVESTTRLS
Ga0314780_039924_49_330	3300034659	Soil	MKSVNRKIQMTLLGVVLATPFLVLASVVGAHISSLADSLRVDILCVALAFVSIAIQIVDGLARRCNTEQAQSSKVEHNGNTDLRGESPLSLSC
Ga0314780_143727_255_533	3300034659	Soil	MKSENRKVQMTLLGVVVTSPFLVLASVVGAHITSLADNVRVDVLCVALAFVSIAIKIVDGLALPGRTEHGQGGDVEPNDNTALRVESTFRLR
Ga0314780_186650_204_482	3300034659	Soil	MKSENRKIQMTLLGVVVTTPFLVLASVVGAHMTSLADNVRVDILCVAIAFVSIAMKMVDGLAFRGRTEQGQSGDVETNGNTALRVESTTRLS
Ga0314782_144998_251_502	3300034661	Soil	MTLLGVVVTSPFLVLASVVGAHITSLADNVRVDVLCVALAFVSIAIKIVDGLALPGRTEHGQGGDVEPNDNTALRVESTFRLR
Ga0314784_094119_288_566	3300034663	Soil	MKSENRKVQMTLLGVVVTTPFLVLASVVGAHMTSLADNVRVDILCVAIAFVSIAMKMVDGLAFRGRTEQGQSGDVETNGNTALRVESTTRLS
Ga0314784_102843_46_327	3300034663	Soil	MKSVNPKIQMTLLGVVLATPFLVLASVVGAHISSLADNMRVDILCVALAFVSIAIQIVDGLARRCNTEQAQSSKVEHNGNTDLRGESPLSLSC
Ga0314787_075765_46_330	3300034665	Soil	MDSRNRKVQMTLLGIVLAAPFLVVASVVGAHITSLADNVRVDVLCVALALVSIAVQIVNRHFALQSNTEQVQGSEVGANGNTDLRGESTISLSC
Ga0314788_175178_25_303	3300034666	Soil	MKSENRKVQMTLLWVVVTSPFLVLASVVGAHITSLADNVRVDVLCVALAFVSIAIKIVDGLALPGRTEHGQGGDVEPNDNTALRVESTFRLR
Ga0314795_014278_891_1127	3300034670	Soil	VVVTSPFLVLASVVGAHITSLADNVRVDVLCVALAFVSIAIKIVDGLALPGRTEHGQGGDVEPNDNTALRVKSTFRLR
Ga0314795_044728_45_329	3300034670	Soil	MDSRNRKVQMTLLGIVLAAPFLVVASVVGAHITSLADNVRVDVLCVALALVSIAVQIVNRHFALQDNTEQVQGSEVGANGNTDLRGESTISLSC
Ga0314795_109465_43_321	3300034670	Soil	MKSENRKVQMTLLGVVVTTPFLVLASVVGAHITSLADNVRVDVLCVAIAFVSIAMKMVDGLAFRGRTEQGQSGDVETNGNTALRVESTTRLS
Ga0314796_136353_1_291	3300034671	Soil	TRLMKSENRKIQMTLLGVVVTTPFLVLASVVGAHMTSLADNVRVDVLCVALASVSIAVRIADGRSLQSKTEQVQSSDVESSGDTDLRGKSTISLSC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085842

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences