Metagenome / Metatranscriptome Family F085778

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085778
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	43 residues
Representative Sequence	IVKVLREDDPDGKWNYEVFVKANGKESGFEVDPNGKFVKQHE
Number of Associated Samples	90
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	7.27 %
% of genes near scaffold ends (potentially truncated)	87.39 %
% of genes from short scaffolds (< 2000 bps)	87.39 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (77.477 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.117 % of family members)
Environment Ontology (ENVO)	Unclassified (36.036 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.342 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 40.00% Coil/Unstructured: 60.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF02518	HATPase_c	12.61
PF03023	MurJ	0.90
PF05711	TylF	0.90
PF00486	Trans_reg_C	0.90
PF16277	DUF4926	0.90
PF16640	Big_3_5	0.90
PF00196	GerE	0.90
PF13650	Asp_protease_2	0.90
PF13432	TPR_16	0.90
PF13376	OmdA	0.90
PF01545	Cation_efflux	0.90
PF05922	Inhibitor_I9	0.90
PF12681	Glyoxalase_2	0.90
PF00903	Glyoxalase	0.90
PF00578	AhpC-TSA	0.90
PF01872	RibD_C	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.90
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.90
COG0534	Na+-driven multidrug efflux pump, DinF/NorM/MATE family	Defense mechanisms [V]	0.90
COG0728	Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis)	Cell wall/membrane/envelope biogenesis [M]	0.90
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.90
COG1404	Serine protease, subtilisin family	Posttranslational modification, protein turnover, chaperones [O]	0.90
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.90
COG2244	Membrane protein involved in the export of O-antigen and teichoic acid	Cell wall/membrane/envelope biogenesis [M]	0.90
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.48 %
Unclassified	root	N/A	22.52 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.48 %
Unclassified	root	N/A	22.52 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.48 %
Unclassified	root	N/A	22.52 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	66.67 %
Unclassified	root	N/A	22.52 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.60 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	66.67 %
Unclassified	root	N/A	22.52 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.90 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	38.74 %
Unclassified	root	N/A	22.52 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	3.60 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	38.74 %
Unclassified	root	N/A	22.52 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	3.60 %
unclassified Anaerolineae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	38.74 %
Unclassified	root	N/A	22.52 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	3.60 %
Anaerolineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	38.74 %
Unclassified	root	N/A	22.52 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	3.60 %
Anaerolineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	38.74 %
Unclassified	root	N/A	22.52 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3.60 %
Anaerolineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2065487018\|GPINP_F5MS3JC02IH20L	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	530	Open in IMG/M
2209111022\|2221226694	Not Available	560	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_13901260	Not Available	540	Open in IMG/M
3300000953\|JGI11615J12901_10062230	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	699	Open in IMG/M
3300000955\|JGI1027J12803_103213462	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	721	Open in IMG/M
3300000955\|JGI1027J12803_104050893	Not Available	621	Open in IMG/M
3300000955\|JGI1027J12803_107143219	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	713	Open in IMG/M
3300002911\|JGI25390J43892_10047584	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1017	Open in IMG/M
3300003911\|JGI25405J52794_10000564	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5433	Open in IMG/M
3300004479\|Ga0062595_101623294	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	604	Open in IMG/M
3300005329\|Ga0070683_101069175	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	775	Open in IMG/M
3300005436\|Ga0070713_100153319	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2052	Open in IMG/M
3300005468\|Ga0070707_101543140	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	631	Open in IMG/M
3300005549\|Ga0070704_101260848	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	675	Open in IMG/M
3300005564\|Ga0070664_101307063	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	685	Open in IMG/M
3300005578\|Ga0068854_101354129	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300005586\|Ga0066691_10188480	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1198	Open in IMG/M
3300005713\|Ga0066905_100974566	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	746	Open in IMG/M
3300005764\|Ga0066903_100543829	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1988	Open in IMG/M
3300005764\|Ga0066903_101711573	All Organisms → cellular organisms → Bacteria	1198	Open in IMG/M
3300005764\|Ga0066903_105654314	Not Available	658	Open in IMG/M
3300005937\|Ga0081455_10116724	All Organisms → cellular organisms → Bacteria → Proteobacteria	2110	Open in IMG/M
3300006358\|Ga0068871_100127201	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2158	Open in IMG/M
3300006904\|Ga0075424_101436616	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	733	Open in IMG/M
3300009098\|Ga0105245_12877813	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	533	Open in IMG/M
3300009147\|Ga0114129_11814054	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	741	Open in IMG/M
3300009162\|Ga0075423_11146004	Not Available	829	Open in IMG/M
3300009174\|Ga0105241_10085862	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2474	Open in IMG/M
3300010041\|Ga0126312_10224929	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1314	Open in IMG/M
3300010043\|Ga0126380_10425153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	995	Open in IMG/M
3300010043\|Ga0126380_11181485	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	658	Open in IMG/M
3300010046\|Ga0126384_10772885	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	858	Open in IMG/M
3300010048\|Ga0126373_13201281	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	510	Open in IMG/M
3300010323\|Ga0134086_10400422	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	552	Open in IMG/M
3300010366\|Ga0126379_13208389	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	547	Open in IMG/M
3300010366\|Ga0126379_13593450	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	519	Open in IMG/M
3300010373\|Ga0134128_12451705	Not Available	575	Open in IMG/M
3300010375\|Ga0105239_11206729	Not Available	872	Open in IMG/M
3300010376\|Ga0126381_100189373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2741	Open in IMG/M
3300010376\|Ga0126381_102191413	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	795	Open in IMG/M
3300010398\|Ga0126383_11804437	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300010401\|Ga0134121_10381164	All Organisms → cellular organisms → Bacteria	1269	Open in IMG/M
3300011444\|Ga0137463_1101686	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1081	Open in IMG/M
3300012200\|Ga0137382_10788352	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	683	Open in IMG/M
3300012200\|Ga0137382_11206763	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	537	Open in IMG/M
3300012210\|Ga0137378_10567620	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1044	Open in IMG/M
3300012212\|Ga0150985_121158023	Not Available	586	Open in IMG/M
3300012359\|Ga0137385_10722741	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	831	Open in IMG/M
3300012359\|Ga0137385_11349231	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	576	Open in IMG/M
3300012359\|Ga0137385_11475037	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	544	Open in IMG/M
3300012582\|Ga0137358_10136118	All Organisms → cellular organisms → Bacteria	1671	Open in IMG/M
3300012922\|Ga0137394_10266707	Not Available	1464	Open in IMG/M
3300012925\|Ga0137419_10024975	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3568	Open in IMG/M
3300012929\|Ga0137404_11988073	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	542	Open in IMG/M
3300012948\|Ga0126375_10655818	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	810	Open in IMG/M
3300012957\|Ga0164303_10417543	Not Available	834	Open in IMG/M
3300012957\|Ga0164303_10620823	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	715	Open in IMG/M
3300012957\|Ga0164303_11343918	Not Available	531	Open in IMG/M
3300012971\|Ga0126369_10124678	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2379	Open in IMG/M
3300012971\|Ga0126369_10386855	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1432	Open in IMG/M
3300012971\|Ga0126369_11564103	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	749	Open in IMG/M
3300012977\|Ga0134087_10033246	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1961	Open in IMG/M
3300012984\|Ga0164309_11453830	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	586	Open in IMG/M
3300012987\|Ga0164307_10791526	Not Available	753	Open in IMG/M
3300012988\|Ga0164306_10448931	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	980	Open in IMG/M
3300013102\|Ga0157371_10462754	Not Available	933	Open in IMG/M
3300013296\|Ga0157374_11739478	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	648	Open in IMG/M
3300013297\|Ga0157378_10766813	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	988	Open in IMG/M
3300013306\|Ga0163162_10129313	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2634	Open in IMG/M
3300013308\|Ga0157375_13201597	Not Available	546	Open in IMG/M
3300015241\|Ga0137418_10650515	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	818	Open in IMG/M
3300015371\|Ga0132258_10386191	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3474	Open in IMG/M
3300015371\|Ga0132258_11428816	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1748	Open in IMG/M
3300015371\|Ga0132258_12591673	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1267	Open in IMG/M
3300015374\|Ga0132255_102624784	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	770	Open in IMG/M
3300015374\|Ga0132255_103430842	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	675	Open in IMG/M
3300015374\|Ga0132255_104547885	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	588	Open in IMG/M
3300018051\|Ga0184620_10275314	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	566	Open in IMG/M
3300018071\|Ga0184618_10346615	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	633	Open in IMG/M
3300019886\|Ga0193727_1034405	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1716	Open in IMG/M
3300019998\|Ga0193710_1013120	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	847	Open in IMG/M
3300020000\|Ga0193692_1068681	Not Available	785	Open in IMG/M
3300020002\|Ga0193730_1155570	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	600	Open in IMG/M
3300020008\|Ga0193757_1003869	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1297	Open in IMG/M
3300020018\|Ga0193721_1025580	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1563	Open in IMG/M
3300020059\|Ga0193745_1075436	Not Available	734	Open in IMG/M
3300020583\|Ga0210401_10220447	All Organisms → cellular organisms → Bacteria	1755	Open in IMG/M
3300021344\|Ga0193719_10015568	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3222	Open in IMG/M
3300021411\|Ga0193709_1116006	Not Available	554	Open in IMG/M
3300022534\|Ga0224452_1170019	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	671	Open in IMG/M
3300022756\|Ga0222622_11042102	Not Available	601	Open in IMG/M
3300024323\|Ga0247666_1101708	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	571	Open in IMG/M
3300025898\|Ga0207692_10284451	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1002	Open in IMG/M
3300025915\|Ga0207693_10435203	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1025	Open in IMG/M
3300025927\|Ga0207687_11475811	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	584	Open in IMG/M
3300025930\|Ga0207701_11063738	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	672	Open in IMG/M
3300025931\|Ga0207644_11850621	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	505	Open in IMG/M
3300025944\|Ga0207661_12162406	Not Available	503	Open in IMG/M
3300028828\|Ga0307312_10983072	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	559	Open in IMG/M
3300028875\|Ga0307289_10329230	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	629	Open in IMG/M
3300028875\|Ga0307289_10345090	Not Available	613	Open in IMG/M
3300030916\|Ga0075386_12033138	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	998	Open in IMG/M
3300030945\|Ga0075373_10037721	All Organisms → cellular organisms → Bacteria	2285	Open in IMG/M
3300031446\|Ga0170820_12910659	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1678	Open in IMG/M
3300031446\|Ga0170820_13158285	Not Available	586	Open in IMG/M
3300031446\|Ga0170820_13298623	Not Available	540	Open in IMG/M
3300031744\|Ga0306918_10633576	Not Available	838	Open in IMG/M
3300031890\|Ga0306925_10329261	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1641	Open in IMG/M
3300031912\|Ga0306921_10185470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2438	Open in IMG/M
3300033551\|Ga0247830_11574519	Not Available	526	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.48%
Host-Associated	Host-Associated	22.52%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.97%
Plants	Host-Associated → Plants	22.52%
Aquatic	Environmental → Aquatic	4.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.91%
Sediment	Environmental → Aquatic → Sediment	4.50%
Roots	Host-Associated → Plants → Roots	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.06%
Loam	Environmental → Terrestrial → Soil → Loam	9.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.60%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.80%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	44.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.01%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.11%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.90%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.90%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.12%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.71%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.31%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.41%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.60%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.60%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.70%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.70%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.80%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.80%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.80%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.80%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.90%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.90%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.90%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2065487018	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2209111022	Grass soil microbial communities from Rothamsted Park, UK - Chitin enrichment	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019998	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m1	Environmental	Open in IMG/M
3300020000	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020008	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m2	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300020059	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a2	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024323	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030945	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPINP_02148120	2065487018	Soil	IVKILREDDPDGKWNYEVFVKANGKESGFEVDPNGKFVKHHE
2222079042	2209111022	Grass Soil	VREDDPDGKWNYEAFVKASGKEFLFEVDPNGNFVKEHK
ICChiseqgaiiFebDRAFT_139012602	3300000363	Soil	DDPDGKWNYEVLVKANGKESKFEVDPNGNFVKQHE*
JGI11615J12901_100622301	3300000953	Soil	IVQIKREGDVNGKWNYEVVVRTNGKEWGFEMDPSGKFVKKHSDQK*
JGI1027J12803_1032134621	3300000955	Soil	VKVLREDDPDGKWNYEVFVKANGKEAGFEVDPNGQFVKQHE*
JGI1027J12803_1040508932	3300000955	Soil	QVVKVMREDDPDGKWNYEVLIKANGKESKFEVDPNGNFVKQHE*
JGI1027J12803_1071432192	3300000955	Soil	AGGEIVRVIREDDPDGKWNYEVFVKTNGTESVFEVDPNGKFVRQRSEVRK*
JGI25390J43892_100475841	3300002911	Grasslands Soil	REDDANGKWNYEVVVRTNGKEWGFEVDPNGKFLKKHTEVKK*
JGI25405J52794_100005641	3300003911	Tabebuia Heterophylla Rhizosphere	MKREDDANGRWNYEVVVKSQGKEWGFEVDPNGKLLKTHGEKK*
Ga0062595_1016232942	3300004479	Soil	KVMREDDPDGKWNYEVLAKVNGKDSKFEVDPNGTFVKQHE*
Ga0070683_1010691751	3300005329	Corn Rhizosphere	REDDPDGKWNYEVVVKANGKESGFEVDPNGRFVKHHEAN*
Ga0070713_1001533192	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VKREDDTNGRWNYEVVVRTNGKEWGFEVAPNGRFVKKHGEKTMGRQ*
Ga0070707_1015431401	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VKREDDTNGRWNYEVVVRTNGKEWGFEVDPNGKLLKQHSAIKR*
Ga0070704_1012608481	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VKREDDTNGRWNYEVVVRTNGKDWGFEIDPNGKVLKQREAKE*
Ga0070664_1013070631	3300005564	Corn Rhizosphere	REDDPDGKWNYEVFVKANGKDSQFEVDPNGNFVKQHE*
Ga0068854_1013541292	3300005578	Corn Rhizosphere	VMREDDRDGKWNYEVFVKTEGKEWCFEVNPQGKFVKKHDATQHKEH*
Ga0066691_101884803	3300005586	Soil	DANGKWNYEVVVRTNGKESGFEVDPNGKLLRQHAEVKR*
Ga0066905_1009745662	3300005713	Tropical Forest Soil	REDDPDGKWNYEVFVKANGKESKFEVDPNGNFVKHHE*
Ga0066903_1005438294	3300005764	Tropical Forest Soil	MREDDPDGKWNYEVVVNANGKESKFEVDPNGNFVKQHE*
Ga0066903_1017115731	3300005764	Tropical Forest Soil	GVKREDDSNGKWNYEVVVRTNGKDWGFEVDPNGKFVKKHSDQKTMGR*
Ga0066903_1056543142	3300005764	Tropical Forest Soil	VLREDDPDGKWNYEVFVKANRKESGFEVDPNGKFVKQHD*
Ga0081455_101167241	3300005937	Tabebuia Heterophylla Rhizosphere	ANGKWNYEVVAKTNGKEWKFEVDPNGKFVKKHDEAKK*
Ga0068871_1001272013	3300006358	Miscanthus Rhizosphere	DPDGKWNYEVFVKASGKDSLFEVDPNGNFVKQHE*
Ga0075424_1014366161	3300006904	Populus Rhizosphere	AGGNVVKVMREDDPDGKWNYEVFVKTNGKESGFEVDPNGKFLREHSE*
Ga0105245_128778132	3300009098	Miscanthus Rhizosphere	RVIREDDPDGKWNYEVFVKTNGTESVFEVDPNGKFVRQHSEVRK*
Ga0114129_118140542	3300009147	Populus Rhizosphere	MREDDPDGKWNYEVHVKANGKDSKFEVDPNGSFVKQHE*
Ga0075423_111460042	3300009162	Populus Rhizosphere	SEDDPNGKWNYEVVVKTNGKESGFEVDPNGKLVRHHGEQKK*
Ga0105241_100858621	3300009174	Corn Rhizosphere	EDDPDGKWNYEIHVKGNGKDSKFEVDPNGTFVKNQE*
Ga0126312_102249291	3300010041	Serpentine Soil	KVVQVKREDDTNGKWNYEVVVKTNGEESAFEVDPNGKFLKKHPELRK*
Ga0126380_104251531	3300010043	Tropical Forest Soil	GQVVKVVREDDPDGKWNYEVFVKANGKESGFEVDPNGNFVKQHE*
Ga0126380_111814852	3300010043	Tropical Forest Soil	RVIREDDPDGKWNYEVVVKTNGKESGFEVDPNGRFVKHHEPN*
Ga0126384_107728851	3300010046	Tropical Forest Soil	VIKVVREDDPDGKWNYEVFLTANGKESGFEVDPNGQFVKNHGE*
Ga0126373_132012812	3300010048	Tropical Forest Soil	PDGKWNYEVFVAANGKELGFEIDPNGQFVKNHGE*
Ga0134086_104004222	3300010323	Grasslands Soil	GGKVVQVKREDDTNGKWNYEVVVKTNGEESAFEVDPNGKFLRQHTEIKR*
Ga0126379_132083891	3300010366	Tropical Forest Soil	DSNGKWNYEVVVKTNGKESGFEVDPNGKLLKQHAEIKR*
Ga0126379_135934502	3300010366	Tropical Forest Soil	VTRVMREDDPDGRWNYEVVVTTNGKESGFEVAPSGKFVKQHSEIKK*
Ga0134128_124517051	3300010373	Terrestrial Soil	RVIREDDPNGKWNYEVVVKTNGKESGFEVDPNGKLVRHHGELKK*
Ga0105239_112067291	3300010375	Corn Rhizosphere	EDDPDGKWNYEVSVKANGKDSLFEVDPNGNFVKQHE*
Ga0126381_1001893731	3300010376	Tropical Forest Soil	DPDGKWNYEVFVKANGKESGFEVDPNGQFVKNHE*
Ga0126381_1021914131	3300010376	Tropical Forest Soil	DPDGKWNYEVFVKANGKQSGFEIDPNGKFVKEHSE*
Ga0126383_118044371	3300010398	Tropical Forest Soil	DDPDGKWNYEVHAKADGKDLKFEVDPDGKFVKQQE*
Ga0134121_103811641	3300010401	Terrestrial Soil	DPDGKWNYEVFVKTNGSESVFEVDPNGKFVRQHSEVRK*
Ga0137463_11016862	3300011444	Soil	REDDPDGKWNYEVFVKANGKDSGFEVDPNGKFVKQHE*
Ga0137382_107883521	3300012200	Vadose Zone Soil	KAAGGSIVKVLREDDPDGKWNYEVFVKANGKESGFEVDPNGKFVKNHE*
Ga0137382_112067632	3300012200	Vadose Zone Soil	RIKREDDANGKWNYEVVVRTNGKEWGFEVDPNGKFLKQQSGITE*
Ga0137378_105676201	3300012210	Vadose Zone Soil	VKREDDANGKWNYEVVVRTNGKESGFEVDPNGKLLRQHAEVKR*
Ga0150985_1211580232	3300012212	Avena Fatua Rhizosphere	SGGNIVKVLREDDPDGKWNYEVFVNANGKQSGFEVDPNGKFVREHGE*
Ga0137385_107227411	3300012359	Vadose Zone Soil	VVQVRREDDSNGKWNYEIVVKTNGKESEFEVDPNGKFLRQHTEIKR*
Ga0137385_113492312	3300012359	Vadose Zone Soil	NQKAAGGKVVQVKREDDTNGKWNYEVVVKTNGEESAFEVDPNGKFLRQHTEIKR*
Ga0137385_114750371	3300012359	Vadose Zone Soil	VKREDDANGKWNYEVVVRTNGKESGFEVDPKGKFLRIKR*
Ga0137358_101361181	3300012582	Vadose Zone Soil	IVKVLREDAPDGKWNYEVCVKANGKESGFEIDPNGKFVKQHE*
Ga0137394_102667071	3300012922	Vadose Zone Soil	AGGGSIVKVLREDDPDGKWNYEVFVKASGKESGFEVDPNGKFVKQHE*
Ga0137419_100249753	3300012925	Vadose Zone Soil	VRREDDANGKWNYEVVVRTNGKEWGFEVDPNGKFLKKHTEIKR*
Ga0137404_119880731	3300012929	Vadose Zone Soil	DANGKWNYEVVVKTNGKESGFEVDPNGKFVRQHTEVKR*
Ga0126375_106558182	3300012948	Tropical Forest Soil	GGKIVRITREDDPDGKWKYEVVVSANGKESGFEVDPNGKFLKQHTEVHK*
Ga0164303_104175431	3300012957	Soil	KAAGGQIVKVVREDDPDGKWNYEAFVKASGKESLFEVDPNGTFVKQHE*
Ga0164303_106208231	3300012957	Soil	GNVVKVMREDDPDGKWNYEVVVKANGKESGFEVDPNGRLVKAHRVVTK*
Ga0164303_113439181	3300012957	Soil	DPDGKWNYEVFVKANGKEALFEVDPNGQFVKQHEYYTAAVT*
Ga0126369_101246785	3300012971	Tropical Forest Soil	DANGKWNYEVVVKTNGKESGFEVDPNGKFVKQRTETR*
Ga0126369_103868553	3300012971	Tropical Forest Soil	AAGGDIVKVLREDDPDGRWNYEVFVKANGKDSGFEVDPNGKFVKHHSE*
Ga0126369_115641032	3300012971	Tropical Forest Soil	KVLREDDPDGKWNYEVFVKANGKESGFEVDPNGKLVKDHSE*
Ga0134087_100332461	3300012977	Grasslands Soil	QKTAGGEVVQVKREDDANGTWNYEVVVRTNGKESGFEVDPKGNS*
Ga0164309_114538301	3300012984	Soil	AGGQIVKVLREDDPDGKWNYEVFVKASGKESLFEVDPNGEFVKQHE*
Ga0164307_107915262	3300012987	Soil	VKVLREDDPDGKCNYEVLVKANGKESGVEVDPNGQFVKQHE*
Ga0164306_104489311	3300012988	Soil	KVVRVMREDDPDGKWNYEVFVTTNGKASGFEVDPNGKFLKEHSE*
Ga0157371_104627541	3300013102	Corn Rhizosphere	REDDPDGKWNYEVVVKASGKASRFEVDPNGNFVKQHE*
Ga0157374_117394781	3300013296	Miscanthus Rhizosphere	KAAGGQVVKVLREDDPDGKWNYEVVVKASGKASRFEVDPNGNFVKQHE*
Ga0157378_107668131	3300013297	Miscanthus Rhizosphere	KAAGGEVVRVIREDDPDGKWFYEVVVKANGKESGFEVDMHGKVVRHHG*
Ga0163162_101293134	3300013306	Switchgrass Rhizosphere	GQVVKVLREDDPDGKWNYEVVVKASGKASRFEVDPNGNFVKQHE*
Ga0157375_132015971	3300013308	Miscanthus Rhizosphere	EDDPDGKWNYEVVAKANGKESKFEVDPNGNFVKQHE*
Ga0137418_106505152	3300015241	Vadose Zone Soil	AAGGEVVQVRREDDSNGKWNYEVVVRTNEKESGFEVDPNGKFLRQHAEIKR*
Ga0132258_103861912	3300015371	Arabidopsis Rhizosphere	DKAAGGTVVKVMREDDPDGKWNYEVVAKANGKESKFEVDPNGNFVKQHE*
Ga0132258_114288161	3300015371	Arabidopsis Rhizosphere	GGNIVKVVREDDPDGKWNYEVFVKANGKDSLFEVDPNGNFVKQHE*
Ga0132258_125916732	3300015371	Arabidopsis Rhizosphere	MREDDPDGKWNYEVFVKTSGKESGFEVDPNGKFLREHSE*
Ga0132255_1026247841	3300015374	Arabidopsis Rhizosphere	KAAGGSIVKVLREDDPDGRWNYEVFVKASGKDSGFEVDPNGQFVKQHE*
Ga0132255_1034308421	3300015374	Arabidopsis Rhizosphere	NVVKVMREDDPDGKWNYEVFVTTNGKKSGFEVDPNGKFLREHNE*
Ga0132255_1045478851	3300015374	Arabidopsis Rhizosphere	VKVVREDDPDGKWNYEASVKASGKESLFEVDPNGNFVKQHE*
Ga0184620_102753142	3300018051	Groundwater Sediment	NQKAAGGSIIKVLREDDPDGKWNYEVFVKANGKESGFEVDPNGKFVKQHE
Ga0184618_103466151	3300018071	Groundwater Sediment	MKRRQAGEIVHVKREDDTNGKWNYEVVVKASGKEWQFEVDPNGKFVKKHGETKE
Ga0173479_108012602	3300019362	Soil	MEPGPPEGKAAGGEIVRVKREDDVNGKWNYEVVVRTNGKEWGFEVDPNGKFRKKYGQIKE
Ga0193727_10344051	3300019886	Soil	GEIVHVKREDDTNGKWNYEVVVKTSGKEWQFEVDPNGKFVKKHGETKE
Ga0193710_10131202	3300019998	Soil	VKREDDTNGKWNYEVVVKTSGKEWQFEVDPNGKFVKKHGETKE
Ga0193692_10686812	3300020000	Soil	GQIVKVLREDDPDGKWNYEVFVKANGKDSLFEVDPNGNFVQQHE
Ga0193730_11555701	3300020002	Soil	IVKVLREDDPDGKWNYEVFVKANGKESGFEIDPNGKFVKNHGE
Ga0193757_10038692	3300020008	Soil	AGGQIVKVLREDDPDGKWNYEVFVKASGKESGFEVDPNGQFVKQHE
Ga0193721_10255802	3300020018	Soil	KAAGGQIVKVLREDDPDGKWNYEVFVKANGKESGFEIDPNGKFVKHHGE
Ga0193745_10754361	3300020059	Soil	GGQIIKVLREDDPDGKWNYEVFVKANGKESLFEVDPNGTFVKQHE
Ga0210401_102204471	3300020583	Soil	VEREDDKNGKWNYEVIVKTNGKKWGFEVDPNGKYVRNHAKPSQAE
Ga0193719_100155681	3300021344	Soil	GSIVKVLREDDPDGKWNYEVFVKANGKESGFEVDPNGKFVKQHE
Ga0193709_11160061	3300021411	Soil	KVLREDDPDGKWNYEVFVKANGKESVFEVDPNGNFVKQHE
Ga0224452_11700192	3300022534	Groundwater Sediment	KAAGGEIVHVKREDDTNGKWNYEIVVKTNGKESKFEVDPNGKFLKKHGETKE
Ga0222622_110421021	3300022756	Groundwater Sediment	EDDPDGKWNYEVFVKANGKESGFEVDPNGKFVKDHE
Ga0247666_11017081	3300024323	Soil	EGGQVVNVMREDDPDGKWNYEIHVKGNGKDSKFEVDPNGTFVKNQE
Ga0207692_102844512	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	EDDPDGKWNYEVVVSANGKKSGFEVDPNGKFVRQHNEIPE
Ga0207693_104352031	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LREDDPDGKWNYEVFVKANGKESGFEVDPNGQFVKNHE
Ga0207687_114758112	3300025927	Miscanthus Rhizosphere	GGQVVKVLREDDPDGKWNYEVVVKASGKASRFEVDPNGNFVKQHE
Ga0207701_110637382	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VREDDPDGKWNYEAFVKASGKESLFEVDPSGNFVKQHE
Ga0207644_118506211	3300025931	Switchgrass Rhizosphere	GGQIVKVLREDDPDGKWNYEVFVKASGKDSGFEVDPNGQFVKQHE
Ga0207661_121624061	3300025944	Corn Rhizosphere	VKVMREDDPDGKWNYEVLAKVNGKDSKFEVDPNGNFVKQHE
Ga0307312_109830721	3300028828	Soil	IVKVLREDDPDGKWNYEVFVKANGKESGFEVDPNGKFVKQHE
Ga0307289_103292302	3300028875	Soil	AAGQEIVRVKREDPDGRWNYEVVARPSGKEWGFEVDPNGKFLKEDSENSECK
Ga0307289_103450901	3300028875	Soil	KAAGGQIVKVLREDNPDGKWNYEVFVKANGKDSKFEVDPNGSFVKQHE
Ga0075386_120331381	3300030916	Soil	GGSIVKVLREDDPDGKWNYEVFVKANGKESGFEVDPNGQFVKQHE
Ga0075373_100377211	3300030945	Soil	AAGGQIVKVLREDDPDGKWNYEVFVKANGKESGFEVDPNGQFVKQHE
Ga0170820_129106591	3300031446	Forest Soil	PDGKWNYEVVVKTNGKESGFDVDPNGRFAKHHEAN
Ga0170820_131582851	3300031446	Forest Soil	REDDPDGKWNYEVSVKANGKDSLFEVDPNGNFVKQHE
Ga0170820_132986231	3300031446	Forest Soil	GGQIVKVIREDDPDGKWNYEAFVKASGKESLFEVDPNGQFVKQHE
Ga0306918_106335762	3300031744	Soil	MREDDPDGKWNYEVHVKANGKDSKFEVDPNGNFVKQHQ
Ga0306925_103292611	3300031890	Soil	MREDDPDGKWNYEVFVKTSGKESGFEVDPNGKFLREHSE
Ga0306921_101854703	3300031912	Soil	AGGTVVKVMREDDPDGKWNYEVHVKANGKDSKFEVDPNGNFVKQHQ
Ga0247830_115745192	3300033551	Soil	VLREDDPDGKWNYEVFVKANGKESLFEVDPNGTFVKQHE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085778

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences