Metagenome / Metatranscriptome Family F085774

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085774
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	58 residues
Representative Sequence	VDLFNALNANPVLTEGTALSTTVAPFLSSDPNAGGTPTTILQPRIIRLAAQFRF
Number of Associated Samples	101
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.95 %
% of genes near scaffold ends (potentially truncated)	90.99 %
% of genes from short scaffolds (< 2000 bps)	89.19 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.22

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.784 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (13.514 % of family members)
Environment Ontology (ENVO)	Unclassified (30.631 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (52.252 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.95% β-sheet: 0.00% Coil/Unstructured: 78.05%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.22
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.22
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF03466	LysR_substrate	17.12
PF11821	ActD	6.31
PF01648	ACPS	2.70
PF00583	Acetyltransf_1	1.80
PF00696	AA_kinase	1.80
PF01546	Peptidase_M20	1.80
PF13570	PQQ_3	1.80
PF03600	CitMHS	1.80
PF00561	Abhydrolase_1	1.80
PF06283	ThuA	0.90
PF03699	UPF0182	0.90
PF12697	Abhydrolase_6	0.90
PF00753	Lactamase_B	0.90
PF07676	PD40	0.90
PF00701	DHDPS	0.90
PF03328	HpcH_HpaI	0.90
PF00248	Aldo_ket_red	0.90
PF08867	FRG	0.90
PF13360	PQQ_2	0.90
PF00117	GATase	0.90
PF01322	Cytochrom_C_2	0.90
PF13620	CarboxypepD_reg	0.90
PF06831	H2TH	0.90
PF00174	Oxidored_molyb	0.90
PF01019	G_glu_transpept	0.90
PF03795	YCII	0.90
PF00190	Cupin_1	0.90
PF07617	DUF1579	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	1.80
COG0266	Formamidopyrimidine-DNA glycosylase	Replication, recombination and repair [L]	0.90
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	0.90
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	0.90
COG1615	Uncharacterized membrane protein, UPF0182 family	Function unknown [S]	0.90
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.90
COG2301	Citrate lyase beta subunit	Carbohydrate transport and metabolism [G]	0.90
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.90
COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	Carbohydrate transport and metabolism [G]	0.90
COG3909	Cytochrome c556	Energy production and conversion [C]	0.90
COG3915	Uncharacterized conserved protein	Function unknown [S]	0.90
COG4813	Trehalose utilization protein	Carbohydrate transport and metabolism [G]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.68 %
Unclassified	root	N/A	15.32 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.68 %
Unclassified	root	N/A	15.32 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.78 %
Unclassified	root	N/A	15.32 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	63.06 %
Unclassified	root	N/A	15.32 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.90 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	36.04 %
Unclassified	root	N/A	15.32 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6.31 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.04 %
Unclassified	root	N/A	15.32 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	3.60 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.04 %
Unclassified	root	N/A	15.32 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	3.60 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.04 %
Unclassified	root	N/A	15.32 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	3.60 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.04 %
Unclassified	root	N/A	15.32 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	3.60 %
unclassified Candidatus Sulfotelmatobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter	0.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.04 %
Unclassified	root	N/A	15.32 %
Candidatus Sulfopaludibacter sp. SbA3	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	3.60 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	0.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2032320006\|FACEOR_FYWIORV02G8VJT	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_104511486	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
3300000443\|F12B_10290270	All Organisms → cellular organisms → Bacteria → Acidobacteria	591	Open in IMG/M
3300004114\|Ga0062593_103309476	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300004114\|Ga0062593_103323766	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300004479\|Ga0062595_102070447	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300004643\|Ga0062591_100601422	All Organisms → cellular organisms → Bacteria → Acidobacteria	972	Open in IMG/M
3300005329\|Ga0070683_100303458	All Organisms → cellular organisms → Bacteria → Acidobacteria	1519	Open in IMG/M
3300005330\|Ga0070690_101281128	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300005332\|Ga0066388_105571182	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300005353\|Ga0070669_101513558	Not Available	583	Open in IMG/M
3300005436\|Ga0070713_100719648	All Organisms → cellular organisms → Bacteria → Acidobacteria	954	Open in IMG/M
3300005438\|Ga0070701_10566558	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	747	Open in IMG/M
3300005440\|Ga0070705_100929725	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	701	Open in IMG/M
3300005451\|Ga0066681_10448958	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300005467\|Ga0070706_101220417	All Organisms → cellular organisms → Bacteria → Proteobacteria	691	Open in IMG/M
3300005468\|Ga0070707_102287737	Not Available	508	Open in IMG/M
3300005471\|Ga0070698_101263868	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300005518\|Ga0070699_101695867	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300005539\|Ga0068853_101433598	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	668	Open in IMG/M
3300005558\|Ga0066698_10574392	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300005561\|Ga0066699_10089426	All Organisms → cellular organisms → Bacteria	2005	Open in IMG/M
3300005563\|Ga0068855_101336179	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	741	Open in IMG/M
3300005566\|Ga0066693_10127259	All Organisms → cellular organisms → Bacteria → Acidobacteria	941	Open in IMG/M
3300005598\|Ga0066706_11042331	Not Available	628	Open in IMG/M
3300005617\|Ga0068859_100272930	All Organisms → cellular organisms → Bacteria → Acidobacteria	1783	Open in IMG/M
3300005617\|Ga0068859_101719992	All Organisms → cellular organisms → Bacteria → Acidobacteria	693	Open in IMG/M
3300005618\|Ga0068864_100817838	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	916	Open in IMG/M
3300005713\|Ga0066905_102221783	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300006034\|Ga0066656_10773577	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300006050\|Ga0075028_100264973	All Organisms → cellular organisms → Eukaryota	948	Open in IMG/M
3300006358\|Ga0068871_100241602	Not Available	1570	Open in IMG/M
3300006844\|Ga0075428_102301382	All Organisms → cellular organisms → Bacteria → Acidobacteria	554	Open in IMG/M
3300006844\|Ga0075428_102360989	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300006847\|Ga0075431_101382125	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	664	Open in IMG/M
3300006852\|Ga0075433_11351687	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300006854\|Ga0075425_101019041	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300006854\|Ga0075425_101218566	All Organisms → cellular organisms → Bacteria → Acidobacteria	855	Open in IMG/M
3300006871\|Ga0075434_100129173	All Organisms → cellular organisms → Bacteria	2545	Open in IMG/M
3300006904\|Ga0075424_100640596	All Organisms → cellular organisms → Bacteria	1135	Open in IMG/M
3300006969\|Ga0075419_10609955	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300007265\|Ga0099794_10240497	Not Available	933	Open in IMG/M
3300009090\|Ga0099827_11476049	Not Available	592	Open in IMG/M
3300009098\|Ga0105245_10093794	All Organisms → cellular organisms → Bacteria → Acidobacteria	2766	Open in IMG/M
3300009098\|Ga0105245_11045215	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	862	Open in IMG/M
3300009147\|Ga0114129_10371481	All Organisms → cellular organisms → Bacteria → Acidobacteria	1890	Open in IMG/M
3300009156\|Ga0111538_13060036	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	584	Open in IMG/M
3300009162\|Ga0075423_12486914	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300009177\|Ga0105248_13157819	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300009551\|Ga0105238_10535007	All Organisms → cellular organisms → Bacteria	1175	Open in IMG/M
3300009610\|Ga0105340_1047338	All Organisms → cellular organisms → Bacteria → Acidobacteria	1675	Open in IMG/M
3300010323\|Ga0134086_10436326	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300010362\|Ga0126377_13274251	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300010366\|Ga0126379_11307406	Not Available	831	Open in IMG/M
3300010397\|Ga0134124_13183202	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	503	Open in IMG/M
3300010399\|Ga0134127_10727952	All Organisms → cellular organisms → Bacteria → Acidobacteria	1035	Open in IMG/M
3300010399\|Ga0134127_10834516	All Organisms → cellular organisms → Bacteria → Acidobacteria	973	Open in IMG/M
3300010399\|Ga0134127_11691052	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	708	Open in IMG/M
3300010399\|Ga0134127_12426842	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	604	Open in IMG/M
3300010401\|Ga0134121_10086418	All Organisms → cellular organisms → Bacteria → Acidobacteria	2614	Open in IMG/M
3300011120\|Ga0150983_10516022	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	627	Open in IMG/M
3300011271\|Ga0137393_11047715	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300012231\|Ga0137465_1198317	Not Available	603	Open in IMG/M
3300012683\|Ga0137398_10993521	Not Available	582	Open in IMG/M
3300012986\|Ga0164304_11119422	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	631	Open in IMG/M
3300014497\|Ga0182008_10984923	Not Available	502	Open in IMG/M
3300015245\|Ga0137409_10946698	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	698	Open in IMG/M
3300015358\|Ga0134089_10539872	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300015371\|Ga0132258_11362743	All Organisms → cellular organisms → Bacteria → Acidobacteria	1792	Open in IMG/M
3300015371\|Ga0132258_12623196	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1258	Open in IMG/M
3300015371\|Ga0132258_13859805	All Organisms → cellular organisms → Bacteria → Acidobacteria	1020	Open in IMG/M
3300015372\|Ga0132256_100321442	All Organisms → cellular organisms → Bacteria	1636	Open in IMG/M
3300015373\|Ga0132257_103438830	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300016371\|Ga0182034_10929338	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	749	Open in IMG/M
3300018053\|Ga0184626_10427008	All Organisms → cellular organisms → Bacteria → Acidobacteria	525	Open in IMG/M
3300021478\|Ga0210402_11121687	All Organisms → cellular organisms → Bacteria → Acidobacteria	714	Open in IMG/M
3300025903\|Ga0207680_10030029	All Organisms → cellular organisms → Bacteria → Acidobacteria	3060	Open in IMG/M
3300025910\|Ga0207684_11223205	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300025918\|Ga0207662_10722055	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	699	Open in IMG/M
3300025923\|Ga0207681_11286544	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	614	Open in IMG/M
3300025926\|Ga0207659_11323084	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	618	Open in IMG/M
3300025927\|Ga0207687_11159275	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	664	Open in IMG/M
3300025935\|Ga0207709_10543381	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	913	Open in IMG/M
3300025960\|Ga0207651_11464031	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300025961\|Ga0207712_11789868	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300027523\|Ga0208890_1084147	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	526	Open in IMG/M
3300027533\|Ga0208185_1040946	All Organisms → cellular organisms → Bacteria → Acidobacteria	1127	Open in IMG/M
3300027880\|Ga0209481_10340456	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300027907\|Ga0207428_10937226	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	610	Open in IMG/M
3300028381\|Ga0268264_12249239	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300031184\|Ga0307499_10042278	All Organisms → cellular organisms → Bacteria → Acidobacteria	1085	Open in IMG/M
3300031538\|Ga0310888_10319918	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300031546\|Ga0318538_10082512	All Organisms → cellular organisms → Bacteria	1635	Open in IMG/M
3300031547\|Ga0310887_10259901	All Organisms → cellular organisms → Bacteria → Acidobacteria	973	Open in IMG/M
3300031719\|Ga0306917_10760522	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	760	Open in IMG/M
3300031720\|Ga0307469_11689357	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	610	Open in IMG/M
3300031747\|Ga0318502_10481084	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	743	Open in IMG/M
3300031768\|Ga0318509_10315022	Not Available	876	Open in IMG/M
3300031781\|Ga0318547_10753777	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
3300031892\|Ga0310893_10280104	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300031908\|Ga0310900_11129060	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	649	Open in IMG/M
3300031940\|Ga0310901_10519063	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	536	Open in IMG/M
3300032075\|Ga0310890_10127050	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1649	Open in IMG/M
3300032076\|Ga0306924_10140460	All Organisms → cellular organisms → Bacteria	2761	Open in IMG/M
3300032180\|Ga0307471_103178299	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	582	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	63.06%
Host-Associated	Host-Associated	36.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	58.56%
Plants	Host-Associated → Plants	36.94%
Aquatic	Environmental → Aquatic	4.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.56%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.03%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.01%
Sediment	Environmental → Aquatic → Sediment	4.50%
Roots	Host-Associated → Plants → Roots	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.05%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.72%
Loam	Environmental → Terrestrial → Soil → Loam	13.51%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.31%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.60%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.72%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.01%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.31%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.41%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.70%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.90%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.90%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	13.51%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.31%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.41%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.50%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.60%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.60%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.80%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.80%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.90%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2032320006	Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012231	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT828_2	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACEORE_4022670	2032320006	Soil	TVLTEGTALSTLVAPFLSPDPSAGGTPTSILQPRLVRLAAQFRF
INPhiseqgaiiFebDRAFT_1045114861	3300000364	Soil	GAILSEGTALTSTVAPYLSSSPDAGGTPFTILQPRLIRIGAQLRF*
F12B_102902701	3300000443	Soil	NALNANPILSEGTALSTTVGPYLSSDPRAGGTPFTILQPRLIRIGAQIKF*
Ga0062593_1033094761	3300004114	Soil	VTVQGQVDLFNALNANPVLTEGTALSTSVAPFLSSDPNSGGTPTSILQPRLVRLGAQFRF
Ga0062593_1033237661	3300004114	Soil	VTVQGQVDLFNALNANPVLIEGTALSTSVAPFLSSDPNSGGTPTSILQPRLIRLGAQFRF
Ga0062589_1009547432	3300004156	Soil	TRYQPHYSQLDFGVRRNFRVWKTTVQAQLDLFNALNSNAVLSEGTALTTTVAPFLSSDPEAGGVPFTILQPRLIRVGAQIRF*
Ga0062595_1020704472	3300004479	Soil	FKFGNTQVQPQINFFNVLNANPVLTEGTSLGSNVSIAPYLSSDPNTGGTPLSILQPRIIQLGMQIRF*
Ga0062591_1006014221	3300004643	Soil	RLNRTTVQAQVDLFNALNANPILSEGTALSSTVGPFLSSDARAGGTPFTILQPRLIRIGAQIKF*
Ga0062594_1015149862	3300005093	Soil	TRYEPHYSQLDFGVRRTFKIRGVTAQAQVDLFNATNSGAILTEGTALSSTVAPFLSSSPDAGGTPTTILQPRLIRIGAQLRF*
Ga0070683_1003034582	3300005329	Corn Rhizosphere	FHFSRGVVVQGQVDLFNVFNSNAVLSEGTALTTSVAPYLSADPNSGGTPITILNPRIVRLAAQFRF*
Ga0070690_1012811281	3300005330	Switchgrass Rhizosphere	MLQFDLFNALNGNNVLTETTTLSTSVAPYLSADPNAGGLPTSILQPRIIRLGAQLRF*
Ga0066388_1055711821	3300005332	Tropical Forest Soil	AQAQVDLFNATNSGAILTEGTGLSSTVAPFLSASPDAGGAPTQILQPRLIRIGAQLRF*
Ga0070669_1015135581	3300005353	Switchgrass Rhizosphere	IRRTFRFGGTRMIQAQVDLFNALNSNAILSEGTSLASSAAPFISPDPDAGGTPLTILQPRLIRVGAQIRF*
Ga0070713_1007196482	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	KIHGVTAQAQVDLFNATNSGAILSEGVSLSSTVGPFVSSSPDAGGTPFTILQPRLIRIGAQLRF*
Ga0070701_105665581	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	VFNALNANSVLSEGTTLSTTVAPFMSVDPNSGGTPISILQPRLVRIGAQFRF*
Ga0070705_1009297252	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	GQVDLFNALNANTVLTEGTALSTSVAPFLSSDPAAGGTPTSILQPRILRLAAQFRF*
Ga0066681_104489582	3300005451	Soil	RFSRGVMVQGQVDLFNALNANPVLTEGTALSSTVAPFLSSDPNSGGTPTSILQPRILRLAAQIRF*
Ga0070706_1012204172	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VQGQIDLFNALNSNTVLTEGTAISTTVAPFLSSDPNAGGTPTSILQPRIIRLAAQFRF*
Ga0070707_1022877372	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VLTEGTALSTTVAPFLSADPNSGGTPTSILQPRIIRLAAQFRF*
Ga0070698_1012638682	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	EGTGLTTSVAPYLSSDPRAGGTPFTILQPRLIRLGLQFRF*
Ga0070699_1016958671	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	RTFRFARGLTVQGQVDLFNALNTNTVLTEGTALSTTVAPFQSSDPSAGGTPTSILQPRILRLAAQFRF*
Ga0068853_1014335981	3300005539	Corn Rhizosphere	NALNANPVLVEGTALSTSVAPFLSADPNSGGTPTSILQPRLVRLGAQFRF*
Ga0066698_105743921	3300005558	Soil	VVQAQVDLFNALNSNAILSEGTALSTTVAPFLSTDPSAGGTPFTILQPRIIRVGAQIRF*
Ga0066699_100894261	3300005561	Soil	FNALNSNTVLTEGTALSTSVAPFLSSDPGAGGTPTSILQPRILRLAAQFRF*
Ga0068855_1013361791	3300005563	Corn Rhizosphere	MLQFDLFNALNGNNVLTEPTTLSTSVAPYLSADPNAGGLPTSILQPRIVRLGAQLRF*
Ga0066693_101272591	3300005566	Soil	RRTFRFARGVTVQGQFDLFNALNTNTVLTEGTALSTSVAPFLSSDPGAGGTPTSILQPRILRLAAQFRF*
Ga0066706_110423311	3300005598	Soil	LRRTFRFSRGVTVQGQVDLFNALNSNTVLVEGTALSTTVAPFVSADPSSGGTPTSILQPRILRVAAQFRF*
Ga0068859_1002729302	3300005617	Switchgrass Rhizosphere	QIDLFNALNSNAVLSEGTALTTSVAPYLSADPNAGGTPITILQPRIVRLAAQFRF*
Ga0068859_1017199922	3300005617	Switchgrass Rhizosphere	DLFNALNANPVLTEGTALSTAVAPFVSADPNSGGTPSSILQPRLIRLGAQFRF*
Ga0068864_1008178381	3300005618	Switchgrass Rhizosphere	GVTVQGQVDLFNALNANPVLTEGTALSTSVAPFLSSDPNSGGTPTSILQPRLVRLGAQFRF*
Ga0066905_1022217831	3300005713	Tropical Forest Soil	LFNATNSGAILSEGTALTSTVAPFLSSAPDAGGTPLTILQPRLIRIGAQIRF*
Ga0066656_107735771	3300006034	Soil	DFGVRRTFKVRTAVVQAQVDLFNALNSNAILSEGTALSTTVAPFLSTDPSAGGTPFTILQPRIIRVGAQIRF*
Ga0075028_1002649731	3300006050	Watersheds	LSEGTALSSTVAPFVSSDPSAGGTPFTILQPRLIRLGAQIKF*
Ga0068871_1002416021	3300006358	Miscanthus Rhizosphere	FNALNANPVLTEGTALGSNVSIAPFLSTDPNSGGTPLSILQPRIIQLGAQIRF*
Ga0074062_108178952	3300006606	Soil	FAVSRIFRFGSTQVRAQVNLFNALNANPVLTEGTALGSNVSIAPYLSTDPNTGGTPLSILQPRIIQLGAQIRF*
Ga0075428_1023013822	3300006844	Populus Rhizosphere	NRTTVQAQVDLFNALNANPILSEGTALSTTVGPYLSSDPRAGGTPFTILQPRLIRIGAQIKF*
Ga0075428_1023609891	3300006844	Populus Rhizosphere	NRTTVQAQVDLFNALNANPILSEGTALSTTVGPYLSSDARAGGTPFTILQPRLIRIGAQIKF*
Ga0075431_1013821252	3300006847	Populus Rhizosphere	IDLFNALNANPILSEGTALSTTVGPFLSSDARAGGTPFTILQPRLIRLGAQIKF*
Ga0075433_113516871	3300006852	Populus Rhizosphere	DLFNALNANPILSEGTALSTTVAPFLSSDARAGGTPFTILQPRLIRIGAQIKF*
Ga0075425_1010190411	3300006854	Populus Rhizosphere	KLTAQAQVDLFNMTNSGAILSEGTALTTAATPFLSSDPNAGGVPFTILQPRLIRIGAQFRF*
Ga0075425_1012185663	3300006854	Populus Rhizosphere	ILTEGTALSSTVAPFLSSSPDAGGTPTTILQPRLIRIGAQLRF*
Ga0075434_1001291731	3300006871	Populus Rhizosphere	DFGIRRNFRFNATQLMLQFDLFSALSGNNVLTETTTLSTSVAPYLSADPNAGGLPTSILQPRIIRLGAQLRF*
Ga0075424_1006405963	3300006904	Populus Rhizosphere	NALNANPILSEGTALSTTVAPFLSSDARAGGTPFTILQPRLIRIGAQIKF*
Ga0075419_106099551	3300006969	Populus Rhizosphere	EGTGLTTSVAPYLSSDPKAGGTPFTILQPRLIRLGLQFRF*
Ga0075435_1008405741	3300007076	Populus Rhizosphere	ALSTSVAPFLSSDPAAGGTPTSILQPRILRLAAQFRF*
Ga0099794_102404971	3300007265	Vadose Zone Soil	VDLFNALNSNNVLTEGTALSTTVAPFLSSDPNAGGTPTSILQPRIIRLAAQFRF*
Ga0099827_114760491	3300009090	Vadose Zone Soil	TVQAQVDLFNALNGNAILSEGTALSSTVAPFVSSDPRAGGVPLTVLQPRLIRIGAQIKF*
Ga0105245_100937943	3300009098	Miscanthus Rhizosphere	FNALNANPVLTEGTALGSNVPIAPYLSTDPNTGGTPLSILQPRIIQLGAQIRF*
Ga0105245_110452151	3300009098	Miscanthus Rhizosphere	RTFRFRSGVTVQGQVDLFNALNANPVLTEGTALSTSVAPFLSSDPNSGGTPTSILQPRLVRLGAQFRF*
Ga0114129_103714813	3300009147	Populus Rhizosphere	LSTTVGPYLSSDARAGGTPLTILQPRLIRIGAQIKF*
Ga0111538_130600361	3300009156	Populus Rhizosphere	AFRLSRGVVVQGQIDLFNALNSNAVLSEGTALTTLAAPYLSSDPSAGGTPITILQPRIVRIGAQFRF*
Ga0075423_124869142	3300009162	Populus Rhizosphere	MNRTTVQAQVDLFNALNANPILSEGTALSTTVGPYLSSDARAGGTPLTILQPRLIRIGAQIKF*
Ga0105248_131578192	3300009177	Switchgrass Rhizosphere	PVLVEGTALSTSVAPFLSADPNSGGTPTSILQPRLVRLGAQFRF*
Ga0105238_105350071	3300009551	Corn Rhizosphere	QVDVFNALNANSVLSEGTTLSTTVAPFMSVDPNSGGTPISILQPRLVRIGAQFRF*
Ga0105340_10473381	3300009610	Soil	LFNALNANPILSEGTALSTTVGPYLSSDARAGGTPLTILQPRLIRIGAQIKF*
Ga0134086_104363262	3300010323	Grasslands Soil	NANPVLTEGTALSSTVAPFLSSDPNSGGTPTSILQPRILRLAAQIRF*
Ga0126377_132742511	3300010362	Tropical Forest Soil	QAQVDLFNATNSGAILSEGVSLSSTVAPFLSSAPDAGGTPLTILQPRLIRIGAQIRF*
Ga0126379_113074062	3300010366	Tropical Forest Soil	AQAQVDLFNATNSGAILTEGTSLSSTVAPFLSSAPNAGGAPTQILQPRLIRIGAQLRF*
Ga0134124_131832021	3300010397	Terrestrial Soil	RTFHMPGGLVVQAQMDLFNALNSNSVLSEGTAMSTLVAPFLSADPNAGGTPLTILNPRLVRIAAQFRF*
Ga0134127_107279523	3300010399	Terrestrial Soil	MLQFDLFNALNGNNMLTETTTLSTSVAPYLSADPNAGGLPTSILQPRIIRL
Ga0134127_108345162	3300010399	Terrestrial Soil	SGAILSEGTALSSTVAPFLSSSPDAGGTPLTILQPRLIRIGAQLRF*
Ga0134127_116910521	3300010399	Terrestrial Soil	RRNFHFNRGVTVQAQVDVFNALNANSVLSEGTTLSTTVAPFMSVDPNSGGTPISILQPRLVRIGAQFRF*
Ga0134127_124268422	3300010399	Terrestrial Soil	DLFNAFNSNAVLSEGTALTTSVAQYLSADPNSGGTPITILNPRIVRLSAQFRF*
Ga0134121_100864184	3300010401	Terrestrial Soil	LFNATNSGAILSEGTALTSTVKPFLSSDPSAGGTPFTILQPRLIRIGAQLRF*
Ga0150983_105160221	3300011120	Forest Soil	KNRTVQAQVDLFNALNGNAILSEGTALSSTAAPFVSSDPRAGGVPLTILQPRLIRLGAQIKF*
Ga0137391_107865652	3300011270	Vadose Zone Soil	LTEGTALSTTVAPFLSSDPNAGGTPTSILQPRIIRLAAQFRF*
Ga0137393_110477151	3300011271	Vadose Zone Soil	NALNSNNVLTEGTALSTTVAPFLSSDPNAGGTPTSILQPRIIRLAAQFRFCAHVENLPTE
Ga0137465_11983171	3300012231	Soil	FGIRRTFRFGGTRMVQAQVDLFNALNSNAILSEGTALTTSVAPFLSSDPLAGGTPLTILQPRLIRIGAQIRF*
Ga0137398_109935212	3300012683	Vadose Zone Soil	LFNALNGNAILSEGTALSSTVAPFVSSDANAGGTPFTILQPRLIRLGAQIRF*
Ga0164304_111194222	3300012986	Soil	AQADVFNALNANSVLSEGTTLSTTVAPFMSADPNSGGTPISILQPRLVRIGAQFRF*
Ga0182008_109849231	3300014497	Rhizosphere	FNATNSGAILSEGVSLSSTVAPFLSSSPDTGGTPLTILQPRLIRIGAQLRF*
Ga0137409_109466981	3300015245	Vadose Zone Soil	RTFRFKRGVTVQGQVDLFNALNSNNVLTEGTALSTTVAPFLSSDPNAGGTPTSILQPRIIRLAAQFRF*
Ga0134089_105398721	3300015358	Grasslands Soil	ALNSNAILSEGTALSTTVAPFLSTDPSAGGTPFTILQPRIIRVGAQIRF*
Ga0132258_113627432	3300015371	Arabidopsis Rhizosphere	AKQLRAQLNLFNALNANPVLTEGTALGSNVSIAPFLSSDPKSGGTPLSILQPRIIQIGAQIRF*
Ga0132258_126231961	3300015371	Arabidopsis Rhizosphere	VDLFNATNSGAILSEGTALTSTVKPFLSSDPDAGGAPLTILQPRLIRIGAQIRF*
Ga0132258_138598051	3300015371	Arabidopsis Rhizosphere	SEGTALSSTVAPFLSSSPDAGGTPLTILQPRLIRIGAQLRF*
Ga0132256_1003214422	3300015372	Arabidopsis Rhizosphere	FKFGATQVRAQVNLFNALNANPVLTEGTALGSNVSIAPFLSTDPNSGGTPLSILQPRIIQLGAQIRF*
Ga0132257_1034388301	3300015373	Arabidopsis Rhizosphere	LFNAFNENVVLSEGVSLTTAAQPFMSSDPNSGGTPLTILQPRLIRIGAQIRF*
Ga0182034_109293382	3300016371	Soil	TQVMLQFDLFNALNGNNVLTETTTLSTSVAPYLSADPNAGGLPTSILQPRIIRLGAQLRF
Ga0184626_104270081	3300018053	Groundwater Sediment	RMVQAQVDLFNALNSNAILSEGTALSSTVGPFLSSDARSGGTPLTILQPRLIRIGAQIRF
Ga0210402_111216872	3300021478	Soil	LELFNALNANPVLTEGTALSTTVAPFVSSDPNSGGTPTSILQPRIVRVGLQFRF
Ga0207680_100300295	3300025903	Switchgrass Rhizosphere	MLQFDLFNALNGNNVLTETTTLSTSVAPYLSADPNAGGLPTSILQPRIIRLGAQLRF
Ga0207684_112232051	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	LRRTFRFARGVTVQGQIDLFNALNSNTVLTEGTAISTTVAPFLSSDPNAGGTPTSILQPRIIRLAAQFRF
Ga0207662_107220551	3300025918	Switchgrass Rhizosphere	ATQVMLQFDLFNALNGNNVLTETTTLSTSVAPYLSADPNAGGLPTSILQPRIIRLGAQLR
Ga0207681_112865441	3300025923	Switchgrass Rhizosphere	WNQLDFGIRRTFRFGGTRMIQAQVDLFNALNSNAILSEGTSLASSAAPFISPDPDAGGTPLTILQPRLIRVGAQIRF
Ga0207650_108324851	3300025925	Switchgrass Rhizosphere	TALSTSVAPFLSSDPNSGGTPTSILQPRLVRLGAQFRF
Ga0207659_113230842	3300025926	Miscanthus Rhizosphere	GVTVQGQVDLFNALNANPVLTEGTALSTSVAPFLSSDPNSGGTPTSILQPRLVRLGAQFR
Ga0207687_111592752	3300025927	Miscanthus Rhizosphere	FRFRSGVTVQGQVDLFNALNANPVLTEGTALSTSVAPFLSSDPNSGGTPTSILQPRLVRLGAQFRF
Ga0207709_105433811	3300025935	Miscanthus Rhizosphere	FNALNANPILSEGTALSSTVGPFLSSDAKAGGTPFTILQPRLIRIGAQIKF
Ga0207651_114640311	3300025960	Switchgrass Rhizosphere	RGVTVQAQADVFNALNANSVLSEGTTLSTTVAPFMSVDPNSGGTPISILQPRLVRIGAQFRF
Ga0207712_117898682	3300025961	Switchgrass Rhizosphere	AQVNLFNALNANPVLTEGTALGSNVPIAPYLSTDPNTGGTPLSILQPRIIQLGAQIRF
Ga0208890_10841472	3300027523	Soil	IFRFGSTQVRAQVNLFNALNANPVLTEGTALGSNVPIAPYLSTDPNTGGTPLSILQPRIIQLGAQIRF
Ga0208185_10409461	3300027533	Soil	RLNRMTLQAQVDLFNALNANPILSEGTALSTTVGPYLSSDARAGGTPLTILQPRLIRIGAQIKF
Ga0209481_103404562	3300027880	Populus Rhizosphere	QGQVDLFNALNANPVLTEGTALSTTVAPFLSSDPNAGGTPTTILQPRIIRLAAQLRF
Ga0207428_109372261	3300027907	Populus Rhizosphere	NRTTVQAQVDLFNALNANPILSEGTALSTTVGPYLSSDARAGGTPFTILQPRLIRIGAQIKF
Ga0268264_122492391	3300028381	Switchgrass Rhizosphere	FRRNFHFNRGVTVQAQVDVFNALNANSVLSEGTTLSTTVAPFMSVDPNSGGTPISILQPRLVRIGAQFRF
Ga0307499_100422781	3300031184	Soil	RRGVTLQAQVDLFNALNANPVLTEGTSISTTVAPFLSADPNAGGTPTTILQPRIIRLAAQFRF
Ga0310888_103199182	3300031538	Soil	LGAKQVRAQVNLFNALNANPVLTEGTALGSNVSIAPFLLSDPNSGGTPLSILQPRIIQLGAQIRF
Ga0318538_100825124	3300031546	Soil	TQVRAQVNLFNALNANPVLTEGTALGSNVPIAPFLSTDPNTGGTPLSILQPRIIQLGAQIRF
Ga0310887_102599012	3300031547	Soil	TTLVAPYLSSDPSAGGTPITILQPRIVRIGAQFRF
Ga0306917_107605221	3300031719	Soil	FNALNGNNVLTETTTLSTSVAPYLSADPNAGGLPTSILQPRIIRLGAQLRF
Ga0307469_116893571	3300031720	Hardwood Forest Soil	FNALNANPVLTEGTALGSNVSIAPFLSTDPNTGGTPLSILQPRIIQLGAQIRF
Ga0318502_104810841	3300031747	Soil	VSRIFKFGATQVRAQVNLFNALNANPVLTEGTALGSNVPIAPFLSTDPNTGGTPLSILQPRIIQLGAQIRF
Ga0318509_103150222	3300031768	Soil	NNVLTETTTLSTSVAPYLSADPNAGGLPTSILQPRIIRLGAQLRF
Ga0318547_107537772	3300031781	Soil	QVRAQVNLFNALNANPVLTEGTALGSNVPIAPFLSTDPNTGGTPLSILQPRIIQLGAQIR
Ga0310893_102801042	3300031892	Soil	VDLFNALNANPVLTEGTALSTTVAPFLSSDPNAGGTPTTILQPRIIRLAAQFRF
Ga0310900_111290602	3300031908	Soil	LFNALNANPVLTEGTALGSNVSIAPFLSTDPNSGGTPLSILQPRIIQLGAQIRF
Ga0310901_105190632	3300031940	Soil	NSNAVLSEGTALTTLVAPYLSSDPSAGGTPITILQPRIVRIGAQFRF
Ga0310890_101270502	3300032075	Soil	FRRGVTVQGQVDLFNALNANPVLTEGTALSTTVAPFLSSDPNAGGTPTTILQPRIIRLAAQLRF
Ga0306924_101404605	3300032076	Soil	VNLFNALNANPVLTEGTALGSNVPIAPFLSTDPNTGGTPLSILQPRIIQLGAQIRF
Ga0307471_1031782992	3300032180	Hardwood Forest Soil	NALNGNAILSEGTALSSTVAPFVSSDPSAGGTPFTILQPRLIRLGAQLKF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085774

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences