Metagenome / Metatranscriptome Family F085675

Basic Information
Family ID	F085675
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	65 residues
Representative Sequence	MSMQGPGGPGGRDPGAQRWGAEQEQIDKGARQDHLAHEAERIHAEEAAERGEVPKPKPWWKFWA
Number of Associated Samples	93
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.08 %
% of genes near scaffold ends (potentially truncated)	25.23 %
% of genes from short scaffolds (< 2000 bps)	83.78 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Most Common Taxonomy
Group	Bacteria (66.667 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (16.216 % of family members)
Environment Ontology (ENVO)	Unclassified (31.532 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (41.441 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.57% β-sheet: 0.00% Coil/Unstructured: 55.43%
Feature Viewer

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Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF00246	Peptidase_M14	14.41
PF03706	LPG_synthase_TM	5.41
PF00916	Sulfate_transp	5.41
PF13792	Obsolete Pfam Family	4.50
PF07676	PD40	4.50
PF00294	PfkB	3.60
PF00999	Na_H_Exchanger	2.70
PF10009	DUF2252	2.70
PF00171	Aldedh	2.70
PF00582	Usp	1.80
PF01329	Pterin_4a	1.80
PF07885	Ion_trans_2	0.90
PF00384	Molybdopterin	0.90
PF07883	Cupin_2	0.90
PF13229	Beta_helix	0.90
PF04952	AstE_AspA	0.90
PF01887	SAM_HAT_N	0.90
PF02634	FdhD-NarQ	0.90
PF13186	SPASM	0.90
PF10027	DUF2269	0.90
PF02423	OCD_Mu_crystall	0.90
PF03795	YCII	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	5.41
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	5.41
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	5.41
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	5.41
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	2.70
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	2.70
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	2.70
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	2.70
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	2.70
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	2.70
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	2.70
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	2.70
COG2154	Pterin-4a-carbinolamine dehydratase	Coenzyme transport and metabolism [H]	1.80
COG1912	Stereoselective (R,S)-S-adenosylmethionine hydrolase (adenosine-forming)	Defense mechanisms [V]	0.90
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.90
COG2423	Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family	Amino acid transport and metabolism [E]	0.90
COG1526	Formate dehydrogenase assembly factor FdhD, a sulfurtransferase	Energy production and conversion [C]	0.90

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.67 %
Unclassified	root	N/A	33.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.67 %
Unclassified	root	N/A	33.33 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.67 %
Unclassified	root	N/A	33.33 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	37.84 %
Unclassified	root	N/A	33.33 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.70 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	37.84 %
Unclassified	root	N/A	33.33 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.80 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.33 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	25.23 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.80 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.33 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	20.72 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.90 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.90 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.33 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	20.72 %
Cellulomonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae	0.90 %
Methylosarcina	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylosarcina	0.90 %
Comamonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Comamonas	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.33 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	20.72 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	0.90 %
Methylosarcina fibrata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylosarcina → Methylosarcina fibrata	0.90 %
Comamonas testosteroni	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Comamonas → Comamonas testosteroni	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2032320004\|FACEMD_FWMYIUC02H4V4D	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
2124908032\|Perma_A_C_ConsensusfromContig81663	All Organisms → cellular organisms → Bacteria	2615	Open in IMG/M
2124908045\|KansclcFeb2_ConsensusfromContig509275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2749	Open in IMG/M
2140918007\|ConsensusfromContig948	All Organisms → cellular organisms → Bacteria	1619	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c2135488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylosarcina → Methylosarcina fibrata	867	Open in IMG/M
3300000550\|F24TB_10202705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	708	Open in IMG/M
3300000858\|JGI10213J12805_10730999	Not Available	566	Open in IMG/M
3300004156\|Ga0062589_101120730	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300004156\|Ga0062589_101336389	Not Available	695	Open in IMG/M
3300004156\|Ga0062589_101588001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	647	Open in IMG/M
3300004157\|Ga0062590_100221375	All Organisms → cellular organisms → Bacteria	1392	Open in IMG/M
3300004480\|Ga0062592_101832961	Not Available	594	Open in IMG/M
3300004643\|Ga0062591_100687745	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300004801\|Ga0058860_11410617	Not Available	1001	Open in IMG/M
3300005105\|Ga0066812_1006980	Not Available	733	Open in IMG/M
3300005165\|Ga0066869_10070053	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300005185\|Ga0066811_1029253	Not Available	509	Open in IMG/M
3300005334\|Ga0068869_101452805	Not Available	608	Open in IMG/M
3300005336\|Ga0070680_101525388	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300005345\|Ga0070692_10434289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	837	Open in IMG/M
3300005354\|Ga0070675_100033811	All Organisms → cellular organisms → Bacteria	4146	Open in IMG/M
3300005367\|Ga0070667_101420778	Not Available	651	Open in IMG/M
3300005406\|Ga0070703_10322859	Not Available	650	Open in IMG/M
3300005438\|Ga0070701_10364516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	906	Open in IMG/M
3300005518\|Ga0070699_100251859	All Organisms → cellular organisms → Bacteria	1578	Open in IMG/M
3300005549\|Ga0070704_101674713	Not Available	587	Open in IMG/M
3300005577\|Ga0068857_100809412	Not Available	895	Open in IMG/M
3300005719\|Ga0068861_100839424	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300005719\|Ga0068861_100894013	Not Available	841	Open in IMG/M
3300005840\|Ga0068870_10334030	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300006049\|Ga0075417_10123520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1189	Open in IMG/M
3300006572\|Ga0074051_10012312	Not Available	681	Open in IMG/M
3300006575\|Ga0074053_10269823	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300006577\|Ga0074050_10022069	All Organisms → cellular organisms → Bacteria	15502	Open in IMG/M
3300006581\|Ga0074048_12910191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Comamonas → Comamonas testosteroni	528	Open in IMG/M
3300006581\|Ga0074048_12980320	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300006844\|Ga0075428_100460314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1362	Open in IMG/M
3300006845\|Ga0075421_102222562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	578	Open in IMG/M
3300006865\|Ga0073934_10153254	All Organisms → cellular organisms → Bacteria	1638	Open in IMG/M
3300006953\|Ga0074063_12944598	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300009094\|Ga0111539_10065415	All Organisms → cellular organisms → Bacteria	4296	Open in IMG/M
3300009801\|Ga0105056_1000518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2831	Open in IMG/M
3300009809\|Ga0105089_1055301	Not Available	625	Open in IMG/M
3300009814\|Ga0105082_1063451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	644	Open in IMG/M
3300009817\|Ga0105062_1000951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3359	Open in IMG/M
3300010041\|Ga0126312_10038063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3212	Open in IMG/M
3300012204\|Ga0137374_11290264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	504	Open in IMG/M
3300012358\|Ga0137368_10627036	Not Available	681	Open in IMG/M
3300012532\|Ga0137373_10249275	All Organisms → cellular organisms → Bacteria	1435	Open in IMG/M
3300012960\|Ga0164301_10984710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	661	Open in IMG/M
3300015371\|Ga0132258_10046706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9879	Open in IMG/M
3300015371\|Ga0132258_10128921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6028	Open in IMG/M
3300015371\|Ga0132258_11561934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1666	Open in IMG/M
3300015372\|Ga0132256_101122065	Not Available	901	Open in IMG/M
3300015372\|Ga0132256_101709955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	738	Open in IMG/M
3300015374\|Ga0132255_100162201	All Organisms → cellular organisms → Bacteria	3129	Open in IMG/M
3300015374\|Ga0132255_100623315	All Organisms → cellular organisms → Bacteria	1596	Open in IMG/M
3300015374\|Ga0132255_105185563	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300017792\|Ga0163161_10281409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	1305	Open in IMG/M
3300017997\|Ga0184610_1157337	Not Available	748	Open in IMG/M
3300018028\|Ga0184608_10234095	Not Available	807	Open in IMG/M
3300018054\|Ga0184621_10108107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	988	Open in IMG/M
3300018071\|Ga0184618_10184816	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300018072\|Ga0184635_10368302	Not Available	549	Open in IMG/M
3300018469\|Ga0190270_10009941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5330	Open in IMG/M
3300018469\|Ga0190270_10290086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1451	Open in IMG/M
3300018469\|Ga0190270_10340242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1358	Open in IMG/M
3300018469\|Ga0190270_10396799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1275	Open in IMG/M
3300018469\|Ga0190270_10411347	All Organisms → cellular organisms → Bacteria	1256	Open in IMG/M
3300018469\|Ga0190270_10866664	Not Available	917	Open in IMG/M
3300018469\|Ga0190270_12126827	Not Available	621	Open in IMG/M
3300020016\|Ga0193696_1017108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1955	Open in IMG/M
3300021073\|Ga0210378_10029457	Not Available	2194	Open in IMG/M
3300022756\|Ga0222622_10202485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1318	Open in IMG/M
3300025885\|Ga0207653_10229579	Not Available	707	Open in IMG/M
3300025932\|Ga0207690_11860969	Not Available	502	Open in IMG/M
3300025933\|Ga0207706_11380440	Not Available	579	Open in IMG/M
3300025935\|Ga0207709_10396658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1054	Open in IMG/M
3300025937\|Ga0207669_10156453	Not Available	1604	Open in IMG/M
3300026118\|Ga0207675_100284720	All Organisms → cellular organisms → Bacteria	1607	Open in IMG/M
3300027006\|Ga0209896_1004939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1358	Open in IMG/M
3300027163\|Ga0209878_1003498	All Organisms → cellular organisms → Bacteria	2280	Open in IMG/M
3300027324\|Ga0209845_1009755	Not Available	1624	Open in IMG/M
3300027523\|Ga0208890_1000068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9096	Open in IMG/M
3300027523\|Ga0208890_1059149	Not Available	616	Open in IMG/M
3300027873\|Ga0209814_10096458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1253	Open in IMG/M
3300027909\|Ga0209382_12095043	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300028381\|Ga0268264_12329803	Not Available	542	Open in IMG/M
3300028587\|Ga0247828_10194666	Not Available	1052	Open in IMG/M
3300028719\|Ga0307301_10040160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1426	Open in IMG/M
3300028722\|Ga0307319_10063611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1164	Open in IMG/M
3300028771\|Ga0307320_10040531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1709	Open in IMG/M
3300028793\|Ga0307299_10220758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	712	Open in IMG/M
3300028802\|Ga0307503_10162281	Not Available	1025	Open in IMG/M
3300028803\|Ga0307281_10106612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	948	Open in IMG/M
3300028803\|Ga0307281_10331935	Not Available	572	Open in IMG/M
3300028819\|Ga0307296_10138171	All Organisms → cellular organisms → Bacteria	1313	Open in IMG/M
3300028878\|Ga0307278_10038200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2187	Open in IMG/M
3300030336\|Ga0247826_10499467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	918	Open in IMG/M
3300031547\|Ga0310887_10012236	All Organisms → cellular organisms → Bacteria	3176	Open in IMG/M
3300031740\|Ga0307468_100179690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1403	Open in IMG/M
3300031944\|Ga0310884_10434866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	760	Open in IMG/M
3300032075\|Ga0310890_10596673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	854	Open in IMG/M
3300032075\|Ga0310890_11472714	Not Available	560	Open in IMG/M
3300032122\|Ga0310895_10531604	Not Available	595	Open in IMG/M
3300032174\|Ga0307470_10664880	Not Available	789	Open in IMG/M
3300033233\|Ga0334722_11313549	Not Available	505	Open in IMG/M
3300033433\|Ga0326726_11250736	Not Available	722	Open in IMG/M
3300034155\|Ga0370498_001034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7698	Open in IMG/M
3300034176\|Ga0364931_0109257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	878	Open in IMG/M
3300034773\|Ga0364936_030292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	937	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.87%
Host-Associated	Host-Associated	26.13%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.77%
Plants	Host-Associated → Plants	25.23%
Aquatic	Environmental → Aquatic	8.11%
Human	Host-Associated → Human	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.06%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.61%
Sediment	Environmental → Aquatic → Sediment	5.41%
Freshwater	Environmental → Aquatic → Freshwater	1.80%
Floodplain	Environmental → Terrestrial → Floodplain	1.80%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.90%
Peat	Environmental → Terrestrial → Peat	0.90%
Digestive System	Host-Associated → Human → Digestive System	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.65%
Loam	Environmental → Terrestrial → Soil → Loam	7.21%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.21%
Sand	Environmental → Terrestrial → Soil → Sand	6.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.31%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.41%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.80%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.90%
Lake	Environmental → Aquatic → Freshwater → Lake	0.90%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	0.90%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.90%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.21%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.31%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	6.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.41%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.41%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.70%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.80%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.90%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.90%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	0.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.90%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.31%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	6.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.41%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.41%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.41%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.41%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.60%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	1.80%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.80%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.80%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.90%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.90%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	0.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.90%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.90%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.90%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.90%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2032320004	Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2-	Environmental	Open in IMG/M
2124908032	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Perma_all	Environmental	Open in IMG/M
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2140918007	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active_all	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005105	Soil and rhizosphere microbial communities from Laval, Canada - mgHPC	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005185	Soil and rhizosphere microbial communities from Laval, Canada - mgHPB	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009801	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30	Environmental	Open in IMG/M
3300009809	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_30_40	Environmental	Open in IMG/M
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027006	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027163	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_40_50 (SPAdes)	Environmental	Open in IMG/M
3300027324	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034155	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_17	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M
3300034773	Sediment microbial communities from East River floodplain, Colorado, United States - 4_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACEMDA_4108610	2032320004	Soil	MTGPGGTGGRDLGAQRWGSEQEEINKMAQQERMAHEADRIHAEEAAEEGRSVAPKRPWWKFWAKG
Perma_A_C_02759660	2124908032	Soil	VSTSGSGGTDERDLGAQRWGAEQEQIDHLAEQEHLVHEAERIHAEEAAEEGRPAPKKRPWWKFWG
KansclcFeb2_03087330	2124908045	Soil	MSMQGPGGAGGRDPGAQRWGAEKQQIDKQAQEEHLVHEAQRIHAEEAAERGEAKPKRPWWKFWA
A_all_C_03328990	2140918007	Soil	MSGPGGAGGRDIGAQRWGSEQEQIEHMAQQDHLVHEAERIHAEEAAEDGQPTPVKRPWWKFWGQG
ICChiseqgaiiDRAFT_21354881	3300000033	Soil	MSMQGPGAEGGRDLGAQRGGSLEEQLYKEAQQEQLAHEADRIHTEEAAERGEVPAKKPWWKFWA*
F24TB_102027051	3300000550	Soil	MSMQGPGGEGGRDLGAQQLGAQQEQLQKEAAQEHLAHEADLIHAEEAAERGEAPAKKPWWKFWA*
JGI10213J12805_107309991	3300000858	Soil	MSMQGPGGSGSRDRGAMAWGSEKDSVDKAVGQEHLAHEAERIHAEEAAERGEVPKKKPWWKFWA*
Ga0062589_1011207302	3300004156	Soil	MSMTGPGGAGGRDPGAQRWGAEQEQIDKGARQDRLAHEAERIHAEEAAERGEAPKPKPWWKFWA*
Ga0062589_1013363893	3300004156	Soil	GAGDPGAQRWGAEKEQIDKGAQQDHLAHEAERIHAEEAAERDEAPKPKPKPWWKFWA*
Ga0062589_1015880012	3300004156	Soil	MSMGGSGGTGDLGGQRWGAEQEQIQHLAEQEHMVHEAERIHAEEAAETGTSPAKKRPWWKFWGQS*
Ga0062590_1002213752	3300004157	Soil	MSMTPGGAGDPGAQRWGAEKEQIDKGAQQDHLAHEAERIHAEEAAERDEAPKPKPKPWWKFWA*
Ga0062592_1018329612	3300004480	Soil	MTPGGAGDPGAQRWGAEKEQIDKGAQQDHLAHEAERIHAEEAAERGEAPKPKPWWKFWA*
Ga0062591_1006877452	3300004643	Soil	MSMTPGGAGDPGAQRWGAEKEQIDKGAQQDHLAHEAERIHAEEAAERDEAPKPKPKPWWK
Ga0058860_114106173	3300004801	Host-Associated	GRMSMSGPGGSGGRDLGAQRWGAEHEQLEHQAQQEHLAHEAERIHAEEAAELGPPVAKKRPWWKFWG*
Ga0066812_10069801	3300005105	Soil	MSMEGPGGTESRDLGAQRWGAEEEQLDKAAAQEHLAREAERIHAEEAAERGEAPKPKRPWLKFWG*
Ga0066869_100700531	3300005165	Soil	GGPGGTGGRDLGAQRWGSEQEQIDHLAEHEHQIHEAQRIHAEEAAETGQPEPKKRPWWKFWG*
Ga0066811_10292532	3300005185	Soil	MSMEGPGGTESRDLGAQRWGAEEEQLDKAAAQEHLAREAERIHAEEAAERGEAPKPKR
Ga0068869_1014528051	3300005334	Miscanthus Rhizosphere	GGSGGRDLGAQRWGAEHEQLEHQAQQEHLAHEAERIHAEEAAELGPPVAKKRPWWKFWG*
Ga0070680_1015253881	3300005336	Corn Rhizosphere	RPVGGAGMSMQGPGGAGGRDPGAERWGAEKQQIDKQAQEEHLVHEAQRIHAEEAAERGEAKPKRPWWKFWA*
Ga0070692_104342892	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MSMSGSGGSGGRDLGAQRWGAEHEQLEHQAQQEHLAHEAERIHAEEAAELGPPVAKKRPWWKFWG*
Ga0070675_1000338113	3300005354	Miscanthus Rhizosphere	MSMQGPGGAGGRDPGAERWGAEKQQIDKQAQEEHLVHEAQRIHAEEAAERGEAKPKRPWWKFWA*
Ga0070667_1014207783	3300005367	Switchgrass Rhizosphere	MSMSGPGGSGGRDLGAQRWGAEHEQLEHQAQQEHLAHEAERIHAEEAAELGPPVAKKRPWWKFWA*
Ga0070703_103228591	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MSMSGPGGSGGRDLGAQRWGAEHEQLEHQAQQEHLAHEAERIHAEEAAELGPPVAKKRPWWKFWG*
Ga0070701_103645161	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MSMSGPGGSGGRDLGAQRWSAEHEQLEHQAQQEHLAHEAERIHAEEAAELGPPVAKKRPWWKFWA*
Ga0070699_1002518591	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MSMQGPGGAGGRDPGAQRWGAEKQQIDKQAQEEHLVHEAQRIHAEEAAERGEAKPKRPWWKFWA*
Ga0070704_1016747132	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MSMSGPGGSGGRDLGAQRWGAEHEQLEHQAQQEHLAHEAERIHAEEAAELGPPVAKK
Ga0068857_1008094122	3300005577	Corn Rhizosphere	MSMSGPGGSGGRDLGAQRWGAEHEQLEHQAQQEHLAHEAERIHAEEAAELGPPVAKKRSWWKFWG*
Ga0068861_1008394242	3300005719	Switchgrass Rhizosphere	MSMSGPGGDGGRDLGAQRWGAEQQEINHMAENDRLVHEAERIHAEEAAEEGRTVAPKRPWWKFWAKG*
Ga0068861_1008940132	3300005719	Switchgrass Rhizosphere	MSMQGPGGEGGRDLGAQRMGAQEEQLYKEAQQEHLAHEADRIHAEEAAERGEAPAKKPWWKFWA*
Ga0068870_103340302	3300005840	Miscanthus Rhizosphere	LRRKATCEEDAAEGRFHMSMSGPGGDGGRDLGAQRWGAERQEINHMAENDRLVHEAERIHAEEAAEEGRTVAPKRPWWKFWAKG*
Ga0075417_101235202	3300006049	Populus Rhizosphere	MSMQGPGGAGGRDPGAQRWGAERQEIDKQAQQEHLAHEAERIHAEEAAERGGADATTSKRPWWKFWA*
Ga0074051_100123121	3300006572	Soil	MSMEGPRGTDNRDLGAQRWGAEEEQIDKAAAQEHLAREAERIHAEEAAERGEAPKAKRPWWKFWG*
Ga0074053_102698231	3300006575	Soil	MSMGGAGGTGGRDLGAQRWGSEQEQIDHLAQQEHQIHEAERIHAEEAAETGQPAPKKRPWWKFWG*
Ga0074050_1002206917	3300006577	Soil	MSMQGPGGTGGRDRGAQNWGAEKEQIDKQAQEDHLVHEAQRIHAEEAAERGEAKPKRPWWKFWA*
Ga0074048_129101911	3300006581	Soil	MAQRKRVSPMEREVSRMSMGGAGGTGGRDLGAQRWGSEQEQIDHLAQQEHQIHEAERIHAEEAAETGVPAPKKRPWWKFWGQG*
Ga0074048_129803202	3300006581	Soil	MSMQGPGGEGGRDLGAQQMGAQEEQLQKEAAQEHLAHEADRIHAEEAAERGEAPAKKPWWKFWA*
Ga0075428_1004603142	3300006844	Populus Rhizosphere	MSLQGPGGPGERDRGAQRWEIEREQIDKGARQDHLAHEAERIHAEEAAERGEVPKKRPWWKFWA*
Ga0075421_1022225621	3300006845	Populus Rhizosphere	MSMQGPGGAGGRDPGAERWGAEKQQIDKQAQEEHLVHEAQRIHAEEAAERGEAKPK
Ga0073934_101532542	3300006865	Hot Spring Sediment	MSMQGPGGPGGRDPGAQRWGAEKEEIDKQAREEHRVHEAQRIHAEEAAVRGEAPKPKRPWWKFWA*
Ga0074063_129445982	3300006953	Soil	GGTGGRDLGAQRWGSEQEQIDHLAEHEHQIHEAQRIHAEEAAETGQPEPKKRPWWKFWG*
Ga0111539_100654153	3300009094	Populus Rhizosphere	MSMQGPGGEGGRDLGAQRMGAQEEQLYKEAQQEQLAHEADRIHAEEAAERGETPAKKPWWKFWA*
Ga0105056_10005182	3300009801	Groundwater Sand	MSMQGPGGPGSRDPGAQRWGAEKEQIDKGAAHDHLAHEAERIHAEEAAEMAAERGEAPKPKRPWWKFWG*
Ga0105089_10553012	3300009809	Groundwater Sand	SMQGPGGPGSRDPGAQRWGAEKEQIDKGAAHDHLAHEAERIHAEEAAEEAAERGEAPKPKRPWWKFWG*
Ga0105082_10634512	3300009814	Groundwater Sand	MSMQGPEGAGGRDPGAQRWGAEKQQIDKQAQEEHLVHEAQRIHAEEAAERGEAKPKRPWWKFWA*
Ga0105062_10009514	3300009817	Groundwater Sand	MSMQGPGGPGSRDPGAQRWGAEKEQIDKGAAHDHLAHEAERIHAEEAAEMAAERGEAPKPERPWWKFWG*
Ga0126312_100380634	3300010041	Serpentine Soil	MSMQGPGGPGSRDPGAQRWGAEKEQIDKGAAHDHLAHEAERIHAEEAAEMAAERGEAPRPKRPWWKFWG*
Ga0137374_112902641	3300012204	Vadose Zone Soil	EAAVDCTPPIGEGADMSMQGPGGPGSRDPGAQRWGAEKEQIDKGAAHDHLAHEAERIHAEEAAEMAAERGEVPKPKRPWWKFWG*
Ga0137368_106270362	3300012358	Vadose Zone Soil	MSMQGPGGPGGRDPGAQRWGAEKEQIDKGAAHDHLAHEAERIHAEEAAEMAAERGEVPKPKRPWWKFWG*
Ga0137373_102492753	3300012532	Vadose Zone Soil	MSMQGPGGAGGRDPGAQRWGAERQQIDKQAQEEHLVHEAQRIHAEEAAERGEAKPKRPWWKFWS*
Ga0164301_109847101	3300012960	Soil	MEREVSRMSMGGAGGTGGRDLGAQRWGSEQEQIDHLAQQEHQIHEAERIHAEEAAELGQPAPKKRPWWKFWG*
Ga0132258_100467066	3300015371	Arabidopsis Rhizosphere	MEREVSRMSMGGAGGTGGRDLGGQRWGSEQEQIDHLAEQEHQIHEAERIHAEEAAELGKPAPKKRPWWKFWG*
Ga0132258_101289212	3300015371	Arabidopsis Rhizosphere	MSIGGSGGTGDLGGQRWGAEQEQIQHLAEQEHMVHEAERIHAEEAAETGTSPAKKRPWWKFWGQS*
Ga0132258_115619342	3300015371	Arabidopsis Rhizosphere	MSMSGPGGDGGRDLGAQRWGAEQDEINQMAEREHLAREAERIHAEEAAEEGRPVPPKRPWWKFWAKGE*
Ga0132256_1011220652	3300015372	Arabidopsis Rhizosphere	RDLGGQRWGSEQEQIDHLAEQEHQIHEAERIHAEEAAELGQPAPKKRPWWKFWG*
Ga0132256_1017099552	3300015372	Arabidopsis Rhizosphere	MSIGGSGGTGDLGGQRWGAEQEQIQHLAEQAHMVHEAERIHAEEAAETGTSPAKKRPWWKFWGQS*
Ga0132255_1001622012	3300015374	Arabidopsis Rhizosphere	MSMQGPGGEGGRDLGAQRMGAQEEQLYKEAQQEHLAHEADRIHAEEATERGETPAKKPWWKFWA*
Ga0132255_1006233151	3300015374	Arabidopsis Rhizosphere	MEREVSRMSMGGAGGTGGRDLGGQRWGSEQEQIDHLAEQEHQIHEAERIHAEEAAELGQPAPKKRPWWKFW
Ga0132255_1051855632	3300015374	Arabidopsis Rhizosphere	TRDREYRRETERGVDMSIGGSGGTGDLGGQRWGAEQEQIQHLAEQEHMVHEAERIHAEEAAETGTSPAKKRPWWKFWGQS*
Ga0163161_102814092	3300017792	Switchgrass Rhizosphere	MSMSGPGGSGGRDLGAQRWGAEHEQLEHQAQQEHLAHEAERIHAEEAAELGPPVAKKRPWWKFWA
Ga0184610_11573371	3300017997	Groundwater Sediment	MSIHGPVGGESLDPGARRWGAEKQQIDKEAEKDHLVHEAQRIHAEEAAERGEATRPKRPWWKFWA
Ga0184608_102340952	3300018028	Groundwater Sediment	MSMQGPGAEGGRDLGAQRWGAQKDELDKEAQQEHLAHEADRIHAEEAAERGEAPARKRPWWKFWA
Ga0184621_101081072	3300018054	Groundwater Sediment	MSMQGPGDPGERDLGAQRWGAEKEEIDKQARQEHLAHEAERIHAEAAAEMAAERGEAPEPKRPWWKFWG
Ga0184618_101848161	3300018071	Groundwater Sediment	MSMQGPGGEGGRDLGAQRWGAQKDELDKEAQQEHLAHEADRIHAEEAAERGEAPARKRPWWKFW
Ga0184635_103683021	3300018072	Groundwater Sediment	MSMQGPVGGESLDPGARRWGAEKQQIDKEAEKDHLMHEAERIHAEEAAERGEATKPKRPWWKFWA
Ga0190270_100099414	3300018469	Soil	MSLQGPGGPGGRDRGAQRWGIEQEQIDKGVRQDHLAHEAERIHAEEAAERGEVPKKRPWWKFWA
Ga0190270_102900862	3300018469	Soil	MSMQGPGGPGGRDPGAQRWGAEQEQIDKGARQDHLAHEAERIHAEEAAERGEVPKPKPWWKFWA
Ga0190270_103402422	3300018469	Soil	MSQQGPGRDIGAQRWGAEQEQIDKGVRQDHLAHEAERIHEEEAAERGEAPKKKPWWKFWAMQ
Ga0190270_103967992	3300018469	Soil	MSMQGPGGPGSRDPGAQRWGAEKEQIDKGAAHDHLAHEAERIHAEEAAEMAAERGEAPKPKRPWWKFWG
Ga0190270_104113472	3300018469	Soil	MSLQGPGGPGGRDRGAQRWGIEQEQIDKGVRQDHLAHEAERIHAEEAAERGEVP
Ga0190270_108666642	3300018469	Soil	MSMQGPGEAGGRDPGAQRWGAEKQQIDKQAHEEHLVHEAQRIHAEEAAERGEAKPKRPWWKFWA
Ga0190270_121268271	3300018469	Soil	MSMQGPGGEGGRDLGAQRMGAQEEQLYKEAAQEHLAHEADRIHAEEAAERGEAPAKKRPWWKFWA
Ga0193696_10171083	3300020016	Soil	MSMQGPGGEGGRDLGAQRMGAQEEQLYQEAQQEHLAHEADRIHAEEAAERGEAPAKKPWWKFWA
Ga0210378_100294571	3300021073	Groundwater Sediment	MSIHGPVGGESLDPGARRWGAEKQQIDKEAEKDHLVHEAERIHAEEAAERGEATRPKRPWWKFWA
Ga0222622_102024853	3300022756	Groundwater Sediment	GGEGGRDLGAQRMGAQEEQLYKEAQQEHLAHEADRIHAEEAAERGEAPARKRPWWKFWA
Ga0207653_102295793	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MSMSGPGGSGGRDLGAQRWGAEHEQLEHQAQQEHLAHEAERIHAEEAAELGPPVAKKRPWWKFWG
Ga0207690_118609691	3300025932	Corn Rhizosphere	GLDFIFRPVGGAGMSMQGPGGAGGRDPGAQRWGAEKQQIDKQAQEEHLVHEAQRIHAEEAAERGEAKPKRPWWKFWA
Ga0207706_113804403	3300025933	Corn Rhizosphere	MSGPGGSGGRDLGAQRWGAEHEQLEHQAQQEHLAHEAERIHAEEAAELGPPVAKKRPWWKFWG
Ga0207709_103966582	3300025935	Miscanthus Rhizosphere	MSMQGPGGAGGRDPGAERWGAEKQQIDKQAQEEHLVHEAQRIHAEEAAERGEAKPKRPWWKFWA
Ga0207669_101564532	3300025937	Miscanthus Rhizosphere	MSMSGPGGDGGRDLGAQRWGAEQQEINHMAENDRLVHEAERIHAEEAAEEGRTVAPKRPWWKFWAKG
Ga0207675_1002847204	3300026118	Switchgrass Rhizosphere	MSMQGPGGEGGRDLGAQRMGAQEEQLYKEAQQEHLAHEADRIHAEEAAERGEAPAKKPWWKFWA
Ga0209896_10049392	3300027006	Groundwater Sand	MSMQGPGGPGSRDPGAQRWGAEKEQIDKGAAHDHLAHEAERIHAEEAAEMAAERGEAPKPERPWWKFWG
Ga0209878_10034982	3300027163	Groundwater Sand	MSMQGPGGAGGHDPGAQRWGAEKQQIDKQAQEEHLVHEAQRIHAEEAAERGEAKPKRPWWKFWA
Ga0209845_10097552	3300027324	Groundwater Sand	MSMQGPGGPGGRDPGAQKWGIEKEEIDKQAREEHLVHEAQRIHSEEAAEAAALRGEAPKPKRPWWKFWA
Ga0208890_10000683	3300027523	Soil	MSMEGPGGTESRDLGAQRWGAEEEQLDKAAAQEHLAREAERIHAEEAAERGEAPKPKRPWLKFWG
Ga0208890_10591491	3300027523	Soil	MSMQGPGGTGGRDRGAQNWGAEKEQIDKQAQEDHLVHEAQRIHAEEAAERGEAKPKRPWWKFWA
Ga0209814_100964582	3300027873	Populus Rhizosphere	MSMQGPGGAGGRDPGAQRWGAERQEIDKQAQQEHLAHEAERIHAEEAAERGGADATTSKRPWWKFWA
Ga0209382_120950431	3300027909	Populus Rhizosphere	MSLQGPGGPGERDRGAQRWEIEREQIDKGARQDHLAHEAERIHAEEAAERGEVPKKRPWWKFWA
Ga0268264_123298032	3300028381	Switchgrass Rhizosphere	LRGAGGSGGRDLGAQRWGAEHEQLEHQAQQEHLAHEAERIHAEEAAELGPPVAKKRPWWKFWG
Ga0247828_101946662	3300028587	Soil	MSMQGPGAEGGRDLGAQRGGSLEEQLYKEAQQEQLAHEADRIHAEEAAERGEAPAKKPWWKFWA
Ga0307301_100401603	3300028719	Soil	MSMQGPGGSGGRDLGAQRWGAQKDELDKEAQQEHLAHEADRIHAEEAAERGEAPARKRPWWKFWA
Ga0307319_100636111	3300028722	Soil	MSMQGPGGEGGRDLGAQRMGAQRDELDKEAQREQLAHEADRIHAEEAAERGGAPKPKRPWWKFWG
Ga0307320_100405312	3300028771	Soil	MSMTPGGAGGRDPGAQRWGAEKEQIDKGAQQDHLAHEAERIHAEEAAERGEAPKSKPWWKFWA
Ga0307299_102207581	3300028793	Soil	DWGGDAMSMQGPGGSGGRDLGAQRWGAQKDELDKEAQQEHLAHEADRIHAEEAAERGGAPSKKRPWWKFWA
Ga0307503_101622812	3300028802	Soil	MSMSGPGGSGGRDPGAQRWGAEHEQLEHQAQQEHLAHEAERIHAEEAAELGPPVAKKRPWWKFWG
Ga0307281_101066122	3300028803	Soil	MSMQGPGGSGGRDLGAQRWGAQKDELDKEAQQEHLAHEADRIHAEEAAERGEAPAKKRPWWKFWA
Ga0307281_103319352	3300028803	Soil	MSMGGAGGTGGRDLGAQRWGSEQEQIDQLAQHEHQIHEAERIHAEEAAETGQEAPKKRPWWKFWG
Ga0307296_101381712	3300028819	Soil	MSMQGPGGSGGRDLGAQRWGAQKDELDKEAQQEHLAHEADRIHAEEAAERGGAPSKKRPWWKFWA
Ga0307278_100382003	3300028878	Soil	MSMEGPGGPGSRDPGAQRWGAEKEQIDKGAAHDHLAHEAERIHAEEAAEMAAERGEA
Ga0247826_104994672	3300030336	Soil	MSMQGPGGEGGRDLGAQRMGAQEEQLYKEAQQEHLAHEADRIHAEEAAERGETPAKKPWWKFWA
Ga0310887_100122363	3300031547	Soil	MSMQGPGGEGGRDLGAQRMGAQEEQLYKEAQQEHLAHEADRIHAEEAAERGESPAKKPWWKFWA
Ga0307468_1001796903	3300031740	Hardwood Forest Soil	MSMQGPGGAGGRDPGAQRWGAEKQQIDKQAQEEHLVHEAQRIHAEEAAERGEVKPKRPWWKFWA
Ga0310884_104348662	3300031944	Soil	MSMSGPGGSGGRDLGAQRWGAEHEQLEHQAQQEHLAHEAERIHAEEAAELGPPVAKKRPWWKF
Ga0310890_105966731	3300032075	Soil	QGPGGEGGRDLGAQRMGAQEEQLYKEAQQEHLAHEADRIHAEEAAERGETPAKKPWWKFW
Ga0310890_114727142	3300032075	Soil	MSMQGPGGEGGRDLGAQRMGAQEEQLYKEAQQEHLAHEADRIHAEEAAERGETP
Ga0310895_105316041	3300032122	Soil	GPGGSGGRDLGAQRWGAEHEQLEHQAQQEHLAHEAERIHAEEAAELGPPVAKKRPWWKFW
Ga0307470_106648801	3300032174	Hardwood Forest Soil	MSMTGPGGTGGRDLGAQRWGAEQDEINQMAQQEHLAHEAERIHAEEAAEEGRPVAPKRPWWKFWAKG
Ga0334722_113135491	3300033233	Sediment	MSMTGPGGEGGRDLGAQRWGAEQEQINHMAEQERLAHEAERIHAYEAAEEGGAPLPVKRPWWKFWGPR
Ga0326726_112507361	3300033433	Peat Soil	MSTTGPGGAGGRDLGAQRWGAEQEQMAKAAEQEHLAHEAERIHAEEAAERGEAPAKKRPWWKFWA
Ga0370498_001034_3228_3425	3300034155	Untreated Peat Soil	MSGSGGAGGRDLGAQRWGSEQEQIDHIAQQEHLVHEAERIHAEEAAEEGRPVPKKRPWWKFWGQG
Ga0364931_0109257_671_874	3300034176	Sediment	MQGPGGAGGRVPGAQRWGAEKEQIDKQAREEHLVHEAERIHADEAAEEAALRGEAPKSKRPWWKFWA
Ga0364936_030292_616_825	3300034773	Sediment	MSMQGPGGAGGRDPGAQRWGAEKEQIDKQAREEHLVHEAERIHADEAAEEAALRGEAPKSKRPWWKFWA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085675

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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