Metagenome / Metatranscriptome Family F085665

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085665
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	49 residues
Representative Sequence	VAVAVAVGVAVAVGVGVGVPPAGAWIATIIGEPVLKKPTVALTACGG
Number of Associated Samples	95
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	54.37 %
% of genes near scaffold ends (potentially truncated)	31.53 %
% of genes from short scaffolds (< 2000 bps)	88.29 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.288 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (14.414 % of family members)
Environment Ontology (ENVO)	Unclassified (29.730 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.946 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF13432	TPR_16	1.80
PF13620	CarboxypepD_reg	1.80
PF13476	AAA_23	0.90
PF13689	DUF4154	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.29 %
Unclassified	root	N/A	11.71 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.29 %
Unclassified	root	N/A	11.71 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.29 %
Unclassified	root	N/A	11.71 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	84.68 %
Unclassified	root	N/A	11.71 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	84.68 %
Unclassified	root	N/A	11.71 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	68.47 %
Unclassified	root	N/A	11.71 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	1.80 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	68.47 %
Unclassified	root	N/A	11.71 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	1.80 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	68.47 %
Unclassified	root	N/A	11.71 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	1.80 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	68.47 %
Unclassified	root	N/A	11.71 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1.80 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	68.47 %
Unclassified	root	N/A	11.71 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1.80 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17361295	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
2170459010\|GIO7OMY02GBIK3	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	532	Open in IMG/M
2170459013\|GO6OHWN01DUFX6	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	537	Open in IMG/M
2228664022\|INPgaii200_c1112676	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	803	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_10843745	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	766	Open in IMG/M
3300000955\|JGI1027J12803_100655152	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	574	Open in IMG/M
3300000955\|JGI1027J12803_101015752	Not Available	544	Open in IMG/M
3300004156\|Ga0062589_100166343	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1539	Open in IMG/M
3300004156\|Ga0062589_100883065	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	821	Open in IMG/M
3300004479\|Ga0062595_100229825	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1181	Open in IMG/M
3300005093\|Ga0062594_100799098	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	872	Open in IMG/M
3300005175\|Ga0066673_10695565	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	586	Open in IMG/M
3300005184\|Ga0066671_10436623	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	840	Open in IMG/M
3300005330\|Ga0070690_100645727	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	808	Open in IMG/M
3300005366\|Ga0070659_100718797	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	865	Open in IMG/M
3300005434\|Ga0070709_11575910	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	534	Open in IMG/M
3300005435\|Ga0070714_101461739	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	667	Open in IMG/M
3300005439\|Ga0070711_100437361	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1069	Open in IMG/M
3300005526\|Ga0073909_10086793	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1213	Open in IMG/M
3300005555\|Ga0066692_11015997	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	507	Open in IMG/M
3300005764\|Ga0066903_101257480	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1379	Open in IMG/M
3300005764\|Ga0066903_107184736	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	576	Open in IMG/M
3300005844\|Ga0068862_100675382	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	998	Open in IMG/M
3300006580\|Ga0074049_12884582	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	712	Open in IMG/M
3300006806\|Ga0079220_12104785	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	505	Open in IMG/M
3300009100\|Ga0075418_10131783	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2658	Open in IMG/M
3300009176\|Ga0105242_11366641	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	734	Open in IMG/M
3300009553\|Ga0105249_10535314	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1220	Open in IMG/M
3300010048\|Ga0126373_12846522	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	540	Open in IMG/M
3300010358\|Ga0126370_12592806	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	507	Open in IMG/M
3300010360\|Ga0126372_11385678	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	735	Open in IMG/M
3300010361\|Ga0126378_11608469	Not Available	738	Open in IMG/M
3300010361\|Ga0126378_12736948	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	563	Open in IMG/M
3300010362\|Ga0126377_12639747	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	577	Open in IMG/M
3300010371\|Ga0134125_11771793	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300010376\|Ga0126381_102965013	Not Available	675	Open in IMG/M
3300012198\|Ga0137364_10387364	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1045	Open in IMG/M
3300012202\|Ga0137363_10999766	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	710	Open in IMG/M
3300012285\|Ga0137370_10778008	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	594	Open in IMG/M
3300012350\|Ga0137372_10091646	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2566	Open in IMG/M
3300012360\|Ga0137375_10035300	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	5621	Open in IMG/M
3300012362\|Ga0137361_10489620	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1129	Open in IMG/M
3300012469\|Ga0150984_117986685	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	539	Open in IMG/M
3300012582\|Ga0137358_10486748	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	832	Open in IMG/M
3300012582\|Ga0137358_10654291	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	703	Open in IMG/M
3300012685\|Ga0137397_10312690	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1171	Open in IMG/M
3300012897\|Ga0157285_10285371	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	556	Open in IMG/M
3300012922\|Ga0137394_11265465	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	601	Open in IMG/M
3300012948\|Ga0126375_11212835	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	629	Open in IMG/M
3300012951\|Ga0164300_10480304	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	705	Open in IMG/M
3300012957\|Ga0164303_11202083	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	555	Open in IMG/M
3300012957\|Ga0164303_11423398	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	519	Open in IMG/M
3300012960\|Ga0164301_10297680	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1084	Open in IMG/M
3300012971\|Ga0126369_13479898	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	516	Open in IMG/M
3300012984\|Ga0164309_10538394	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	901	Open in IMG/M
3300012985\|Ga0164308_11223885	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	679	Open in IMG/M
3300012989\|Ga0164305_10465375	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	986	Open in IMG/M
3300013770\|Ga0120123_1130289	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	589	Open in IMG/M
3300015372\|Ga0132256_103109462	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	558	Open in IMG/M
3300015373\|Ga0132257_100442719	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1586	Open in IMG/M
3300015373\|Ga0132257_102139967	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	723	Open in IMG/M
3300015373\|Ga0132257_102393555	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	685	Open in IMG/M
3300015373\|Ga0132257_104367454	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	514	Open in IMG/M
3300015374\|Ga0132255_102874104	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	736	Open in IMG/M
3300015374\|Ga0132255_104320537	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	603	Open in IMG/M
3300015374\|Ga0132255_105510854	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	536	Open in IMG/M
3300016294\|Ga0182041_10458043	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1097	Open in IMG/M
3300016294\|Ga0182041_11010341	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	752	Open in IMG/M
3300016341\|Ga0182035_11210084	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	675	Open in IMG/M
3300018081\|Ga0184625_10615329	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	531	Open in IMG/M
3300019356\|Ga0173481_10276951	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	769	Open in IMG/M
3300019789\|Ga0137408_1482874	All Organisms → cellular organisms → Bacteria	5457	Open in IMG/M
3300019878\|Ga0193715_1119242	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	512	Open in IMG/M
3300019881\|Ga0193707_1086350	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	955	Open in IMG/M
3300019882\|Ga0193713_1076661	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	943	Open in IMG/M
3300020006\|Ga0193735_1006858	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3632	Open in IMG/M
3300021078\|Ga0210381_10144318	Not Available	804	Open in IMG/M
3300021080\|Ga0210382_10331412	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	671	Open in IMG/M
3300023058\|Ga0193714_1063156	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	521	Open in IMG/M
3300024186\|Ga0247688_1010323	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1306	Open in IMG/M
3300025549\|Ga0210094_1040262	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	805	Open in IMG/M
3300025960\|Ga0207651_11645131	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	578	Open in IMG/M
3300026088\|Ga0207641_11067293	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	806	Open in IMG/M
3300026095\|Ga0207676_11647205	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	640	Open in IMG/M
3300027684\|Ga0209626_1060876	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	952	Open in IMG/M
3300028824\|Ga0307310_10319799	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	758	Open in IMG/M
3300028828\|Ga0307312_10984283	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	558	Open in IMG/M
3300031015\|Ga0138298_1015297	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	547	Open in IMG/M
3300031231\|Ga0170824_105504834	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	517	Open in IMG/M
3300031231\|Ga0170824_116909479	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	526	Open in IMG/M
3300031469\|Ga0170819_14902192	Not Available	979	Open in IMG/M
3300031474\|Ga0170818_112847714	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	563	Open in IMG/M
3300031538\|Ga0310888_10185567	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1134	Open in IMG/M
3300031538\|Ga0310888_10287402	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	935	Open in IMG/M
3300031720\|Ga0307469_11957636	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	568	Open in IMG/M
3300031753\|Ga0307477_10797687	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	627	Open in IMG/M
3300031908\|Ga0310900_10341613	All Organisms → cellular organisms → Bacteria	1117	Open in IMG/M
3300031910\|Ga0306923_11904977	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	607	Open in IMG/M
3300031940\|Ga0310901_10612564	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	500	Open in IMG/M
3300031944\|Ga0310884_10665625	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	627	Open in IMG/M
3300031954\|Ga0306926_10344193	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1844	Open in IMG/M
3300032180\|Ga0307471_101299118	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	890	Open in IMG/M
3300032205\|Ga0307472_101164861	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	734	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.68%
Host-Associated	Host-Associated	15.32%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.08%
Plants	Host-Associated → Plants	15.32%
Aquatic	Environmental → Aquatic	3.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.08%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.01%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.31%
Freshwater	Environmental → Aquatic → Freshwater	1.80%
Marine	Environmental → Aquatic → Marine	0.90%
Sediment	Environmental → Aquatic → Sediment	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.97%
Loam	Environmental → Terrestrial → Soil → Loam	8.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.31%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.70%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.80%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.41%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.31%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.50%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.70%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.90%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.41%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.21%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	6.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.60%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.60%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.70%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.80%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.80%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.80%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.90%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.90%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.90%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013770	Permafrost microbial communities from Nunavut, Canada - A15_5cm_18M	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300023058	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m1	Environmental	Open in IMG/M
3300024186	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK29	Environmental	Open in IMG/M
3300025549	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031015	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A9_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_03583930	2088090014	Soil	MVRGVGVGRTVAVGVGLGVTIGVGLTVGVGVAPPAGAWIAIAIGDPVLKKSIVALVACGG
F62_06999030	2170459010	Grass Soil	VAVAVAVAVAVGVAVAVGVGVGVPPPAGAWMATVIGDPVLKNPTVASAL
N57_01210080	2170459013	Grass Soil	VGLGVAVAVAVAVAVGVGVPPAGAWIATIIGEPVLKNPTVAVVVCGG
INPgaii200_11126761	2228664022	Soil	VGVAVGVGVGVGVPPPAGAWIATVIGDPVLKKSTMAFAACG
ICChiseqgaiiFebDRAFT_108437452	3300000363	Soil	VGRGVVLAVAVGVAVGVGVAPPEGAWIATVIGEPVLKKPIVALPASGG*
JGI10214J12806_102578352	3300000891	Soil	VAVAVGVGVAVAVGVGVGVPPPPGAWIATIIGDPVLKNPTV
JGI1027J12803_1006551522	3300000955	Soil	VAVAVGVGVGVPPAGAWIATIMGDPVLKNPTVAFVLAGG*
JGI1027J12803_1010157522	3300000955	Soil	VAVGVGLGVTIGVGLTVGVGVAPPAGAWIAIAIGDPVLKKS
Ga0062589_1001663431	3300004156	Soil	VAVGVAVDVAVAVGVAVAVGVGVGVAPAVGPWIATISGEPVLKNPTVALASTGG*
Ga0062589_1008830651	3300004156	Soil	VGRGVALAVGVAVGVGVAPPEGAWIATVIGEPVLKKPIVALAACGG*
Ga0062595_1002298252	3300004479	Soil	VGLGVAVGLGVDVAVAVGVGVGVPPAGAWIATIIGEPVLKNPTVALAVCGG*
Ga0062594_1007990981	3300005093	Soil	VGLGVAVGLGVDVAVAVGVGVGVPPAGAWIATIIGEPVLKNPTVPLAVCGG*
Ga0066673_106955651	3300005175	Soil	VAVAVGVGNGVPVAVGVGEGVPRPLGLWIPTVIDDPVLKKPTVAFV
Ga0066671_104366231	3300005184	Soil	VGRDLGDGVGLGVPVGVAVAVGVGVGVPPPPGAWIATIMGGPVLKNPTVASVVCGG*
Ga0070690_1006457272	3300005330	Switchgrass Rhizosphere	VAVAVGVAVGVVVAVAVGVGVGVTAPAGAWIATNMGDPVLKNPTVAFVLAGG*
Ga0070688_1003415041	3300005365	Switchgrass Rhizosphere	VGLGLAVAVAVGLGLAVGVGVGVPPPIGPWIATVIGEPVLK*
Ga0070659_1007187973	3300005366	Corn Rhizosphere	VAVAVAVAVAVGVAVAVGVGVGVPPPAGAWIPTIIGDPVLKKPTVALVVCGG*
Ga0070709_115759102	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VGVVLGVAVAVGVGVAVAVGVGVAPPAGAWIAIIIGEPVLKKPTVPLISCGG*
Ga0070714_1014617391	3300005435	Agricultural Soil	VGCGVAVAVAVAVAVAVAVGVGVGVPPVGAWIATIIGEPVLKKPTVALTACGG*
Ga0070711_1004373611	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VAVADGVAVGVGVGVPPAGAWIATIIGDPVLKKPTVALVVCGG*
Ga0073909_100867931	3300005526	Surface Soil	VVVGVAVDVAVAVAVAVGVGVGVPPAGAWIATIIGEPVLKNPTVALTDCGG*
Ga0066692_110159972	3300005555	Soil	AVAVAVGVGVSVGVGVGVTPPAGAWIATVMGEPVLKKPIVASAACGG*
Ga0066903_1012574801	3300005764	Tropical Forest Soil	VAVGIGVDVAVGVAVAVAVGVGVGVPPVGAWIATIIGEPVLKNPTVALAVCGG*
Ga0066903_1071847361	3300005764	Tropical Forest Soil	VAVADGVAVGVGVAPPEGAWIATVIGEPVLKKPIVALA
Ga0068862_1006753822	3300005844	Switchgrass Rhizosphere	VGLGVEVAVAVAVAVAVGVTVGVGVGVGVVPPAGAWIATIIGAPVLKNPTVALAACGG*
Ga0074049_128845821	3300006580	Soil	VGLGVAVAVAVAVGVGVGVGVPPPAGAWIATIIGDPVLKKPTVALVVC
Ga0079220_121047852	3300006806	Agricultural Soil	DGAAVGVGVAPPEGAWIATVIGEPVLKKPIVALAACGG*
Ga0075418_101317832	3300009100	Populus Rhizosphere	VVLAVAVGVAVGVGVAPPEGAWIATVIGEPVLKKPIVAFAACGG*
Ga0105242_113666412	3300009176	Miscanthus Rhizosphere	VGLGVAVTVAVAVAVAVAVAVGVGVGVPPAGAWIATIIGEPVLKNPTVALVDCGG*
Ga0105249_105353141	3300009553	Switchgrass Rhizosphere	VGLGVAVTVAVAVAVAVAVAVGVGVGVPPAGAWIATIIGEPVLKNPIVPLADCGG
Ga0126373_128465221	3300010048	Tropical Forest Soil	VGLGVAVGVDVAVAVGVGVGVPPAGAWIATIMGEPVLKNPTVALAVCGG*
Ga0126370_125928062	3300010358	Tropical Forest Soil	VAVADGVAVGVGVAPPEGAWIATVIGEPVLKKPIVALAACGG*
Ga0126372_113856782	3300010360	Tropical Forest Soil	VGLGVAVGVAVGVAVAVGVAVGVAPAAGPWIATIMGEPVLKKPTVALAAAGG*
Ga0126378_116084692	3300010361	Tropical Forest Soil	VVLAVAVGVAVGVGVAPPEGAWIATVIGEPVLKKPIVALAACGG*
Ga0126378_127369482	3300010361	Tropical Forest Soil	VGRALGDGLDLGVGVGRGVDVAVGVAVAVAVGVGLAVPPEGTSIATVIGDPVLKNPTVAFALCGG*
Ga0126377_126168731	3300010362	Tropical Forest Soil	LGLGEGVGLGVAVGVVLGVGVGVGVTAPAGAWITTVIGDPVVKKPTV
Ga0126377_126397473	3300010362	Tropical Forest Soil	VGLGVAVGVAVGVAVAVGVGVGVAPAAGPWIATIMGEPVLKKSTVALAASGG*
Ga0134125_117717932	3300010371	Terrestrial Soil	MHGGVPVAVGVAVAVAVAVAVGLGVPVGVGDGVPVPPGAMIPTAMGEPVLKKPTMALVTPGA*
Ga0126381_1029650132	3300010376	Tropical Forest Soil	VGLGVAVGVAVGVAVAVGVGVGVAPAAGPWIATIMGEPVLKKPTVALAAAGG*
Ga0137364_103873641	3300012198	Vadose Zone Soil	VDVGVEVAVAVAVGVAVGVGVGVPPPPGAWIPTVMGDPALKKPTVALALCGG*
Ga0137364_110005792	3300012198	Vadose Zone Soil	VGRDLGDGVGLGVPVGVAVAVGVGVGVPPPPGAWIATIMGGPVLKNP
Ga0137363_109997662	3300012202	Vadose Zone Soil	VGRGLGDAIDLGVGVGRGVAVGVAVAVGVGVAPPAGAWIATVIGDPVLKKPTVALAPCGG
Ga0137399_112167912	3300012203	Vadose Zone Soil	VGLGVAVVGAVAVAVAVGVGVAVAVGVGVGVPPPAGAWIATIIGDPVLK
Ga0137370_107780081	3300012285	Vadose Zone Soil	GVRVGVAVGLGVGVGLAVGVGLGVPTPAGAWIATVMGDPVLKKPTVALADCGG*
Ga0137372_100916462	3300012350	Vadose Zone Soil	MVGVGVGVGVGVGVGVAPVLGAWVATVIGDPVLKKPVVAFAT*
Ga0137375_100353001	3300012360	Vadose Zone Soil	VGRGVAVAVAVAVAVGVGVGVPPPAGAWIATIMGDPVLKNPTVAFVIPGG*
Ga0137361_104896202	3300012362	Vadose Zone Soil	VAVGVVLGVAVAVAVGVGVGVPLDAGARIATIIGEPVLKKPTVAS
Ga0150984_1179866851	3300012469	Avena Fatua Rhizosphere	MGLGEGVGLGVAVGVAVEVAVAVGVGVGVPPAGAWIATIVGEPILKNPTVALADCGG*
Ga0137358_104867481	3300012582	Vadose Zone Soil	VDVGVEVAVAVGVGVGVGVPPPPGAWSPTIIGEPVLKKPTVALALCGG*
Ga0137358_106542911	3300012582	Vadose Zone Soil	VSVGVAVAVAVAVAVGVGVELAVGVGVGVPPVGPWIAAIIGEPVLKKPTVALELCGG*
Ga0137397_103126901	3300012685	Vadose Zone Soil	VAVAVAVGVGEGVPVEVAVAVGVGEGVPSPLGAWIPTVMGDPVLKKPTVALTA*
Ga0157285_102853711	3300012897	Soil	VAVAVAVGVIPGLNVGVGVGVAGNPGAWMATAIGDPVLKKPIVASLG*
Ga0137394_112654651	3300012922	Vadose Zone Soil	VLAVAVGVAVGVGVGVAPPEGAWIATIIGEPVLKKPIVALSA
Ga0137359_102383621	3300012923	Vadose Zone Soil	VDVEVAVAVAVAVAVGVGVDVGVGVGEPVPEGPSIATVVGDPVLK*
Ga0126375_112128352	3300012948	Tropical Forest Soil	VAVAVGVGVGVPPAGAWIATIIGAPVLKNPTVALAVCGG*
Ga0164300_104803041	3300012951	Soil	VGLGVAVTVAVGVAVAVGVAVGVGVAVPPPAGAWIATIIGDPVLKKPTVALVVCGG*
Ga0164303_112020832	3300012957	Soil	VGLGVAVAVAVAVAVAVAVGVGVGDPPPAGAWIATVVGDPVLKNPTVALAFCGG*
Ga0164303_114233981	3300012957	Soil	VGLGVAVAVGVGVGVPPPAGAWIATIIGDPVLKKPTVA
Ga0164301_102976801	3300012960	Soil	VAAAVAVGVGVAPPAGAWIATVMGDPVLKKPTVAFALCGG*
Ga0126369_134798981	3300012971	Tropical Forest Soil	VGVAVAVEVGVGVGVGMAPPAGAWIATIIGEPVLKKPTVALVSCGG*
Ga0164309_105383942	3300012984	Soil	VAVADGVAVGVGVAPPEGAWIATIIGEPVLKKPIVALAACGG*
Ga0164308_112238851	3300012985	Soil	VGLGVAVAVAVAVAVAVAVGVGVGVPPPAGAWIATVIGDPVLKNPTVALAFWGG*
Ga0164305_104653751	3300012989	Soil	VGRGVAVGVAVGVGVAPPEGAWIATIIGEPVLKKPIVALAACGG*
Ga0120123_11302892	3300013770	Permafrost	VAVGVVLGVAVAVAVGVGVGVPLDAGARIATIIGEPVLKKPTVASAFC
Ga0132256_1031094621	3300015372	Arabidopsis Rhizosphere	VGVGVGVGVGVGVGVGVAPAAGPWISTVVGEPVLKNPTVA
Ga0132257_1004427192	3300015373	Arabidopsis Rhizosphere	VGRGVALAVGVAVGVGVAPPEGAWIATVIGEPVLKKPIVAL
Ga0132257_1021399672	3300015373	Arabidopsis Rhizosphere	MGLGDGVGLGVAVDEAVAVAVAVAVAVGVGVGVPPAGAWIATIIGEPVLKNPTVALADCGG*
Ga0132257_1023935551	3300015373	Arabidopsis Rhizosphere	VGLGVAVGVAVAVAVGVGVGVPPPAGAWIATIIGDPVLKNPTVALVVCGG*
Ga0132257_1043674541	3300015373	Arabidopsis Rhizosphere	VAVAVAVAVGVAVAVGVGVGVPPPPGAWIAIVMGDPVLKNPTVPFVLAGG*
Ga0132255_1028741042	3300015374	Arabidopsis Rhizosphere	LDLGDGVGLGVAVGVAVVVAVAVGVGVGVPPAGASIATIIGEPVLKNPTAAVAACGG*
Ga0132255_1043205371	3300015374	Arabidopsis Rhizosphere	VAVAVAVGVEVAVAVAVAVGVGVGVPPPPGAWIPTVMGDPVLKNPTVALALCGG*
Ga0132255_1055108541	3300015374	Arabidopsis Rhizosphere	VGRGVAVAVAVAVGVGVGVGVPPPAGAWIATIIGDPVLKNPNVALVVCGG*
Ga0182041_104580431	3300016294	Soil	VAVADGVAVGVGVAPPEGAWIATVIGEPVLKKPIVALAA
Ga0182041_110103412	3300016294	Soil	VGLGVAVGVAVGVAVAVGVGVGVAPAAGPWIATIMGEPVLKKPTVALAAAGG
Ga0182035_112100841	3300016341	Soil	VGLGVAVGVAVGVAVAVGVGVGVAPVAGAWIWTVIGEQVLKHPTVAVV
Ga0184625_106153291	3300018081	Groundwater Sediment	RGLGRGLVLGDGVGLGVAVGVAVTVGVGVGVPPPAGDWIATIIGDPVLKNPTVAFVLCGG
Ga0066667_102553391	3300018433	Grasslands Soil	VGVAVAVGVGVAVAVGVAVGVEVGDGLGTPPGAWTTTSIGEPVLKKPTV
Ga0173481_102769511	3300019356	Soil	VGLGVAVTVAVGVAVAVGVAVGVGVAVPPPAGAWIATIIGDPVLKKPTVALVVCGG
Ga0137408_14828741	3300019789	Vadose Zone Soil	VNVAVGVGVGLAVAWEWGVPFPVGAWITTVIGEPVLKKSTVALAFGGG
Ga0193715_11192422	3300019878	Soil	GVGLAVAVAVGVGLAVGVGLGVPPAGPWTATVMGVPVLKKPTVASAFCGG
Ga0193707_10863501	3300019881	Soil	VVVGVAVDVAVAVAVAVGVGVGVPPAGAWIATIIGEPVLKNPTVAVVACGG
Ga0193713_10766612	3300019882	Soil	VAVAVAVGVGVAVAVAVAVGVGVGVPPPPGAWIPTVMGDPVLKKPTVALALCGG
Ga0193735_10068581	3300020006	Soil	VDVAVAVAVAVAVAVGVAVGVTPPAGAWIATVMGDPVLKKPTVALALCGG
Ga0210381_101443181	3300021078	Groundwater Sediment	VGVGVTIGVGLAVGVGVAPPAGAWIAIVIGDPVLKKSITALVAC
Ga0210382_103314121	3300021080	Groundwater Sediment	VAVAVGVGVGVPPAGAWIATIMGDPVLKKPTVASVLC
Ga0193714_10631561	3300023058	Soil	GLAVGVGVGVPPPIGPEIATIIGEPVLKKPTVALAVWGG
Ga0247688_10103233	3300024186	Soil	VAVAVAVGVAVAVGVGVGVGVTAPPGAWIATIMGEPVLKNPTVPLAACGG
Ga0210094_10402622	3300025549	Natural And Restored Wetlands	VAVAVAVAVGVGVGVGEAPAAGAWIATIIGEPVLKNPTVALAFSGG
Ga0207651_116451311	3300025960	Switchgrass Rhizosphere	AVAVAVGVAVGVAVGVGVGVGVVPPAGAWIATIIGAPVLKNPTVALAACGG
Ga0207641_110672931	3300026088	Switchgrass Rhizosphere	VAVAVGVAVGVVVAVAVGVGVGVTAPAGAWIATNMGDPVLKNPTVAFVLAGG
Ga0207676_116472051	3300026095	Switchgrass Rhizosphere	VAVAVGVAVGVVVAVAVGVGVGVTAPAGAWIATNMGDPVLKNPTVAFVLAG
Ga0209626_10608762	3300027684	Forest Soil	VAVAVAVAVGVGLVVGVGVGLAPPPGARIATIIGEPVLKKPTVPLEFCGG
Ga0307310_103197992	3300028824	Soil	MVGVAVDEAVAVAVGVAVAVAVGVGVGVPPAGAWIATIIGEPVLKNPTVASADCGG
Ga0307312_109842831	3300028828	Soil	VDVAVAVAVAVAVAVAVGVAVGVTPPAGAWIATVMGDPVLKKPTVALALCGG
Ga0138298_10152971	3300031015	Soil	GLGLGVGVGVGVEVAVAVGVGVAPPAGAWIATVMGDPVLKKPTVALALCGG
Ga0170824_1055048342	3300031231	Forest Soil	VGLGVAVGVAVAVGVAVGVAPPAGAWIATVIGDPVLKNPTVALALCGG
Ga0170824_1169094791	3300031231	Forest Soil	VAVAVAVGVAVAVGVGVGVPPAGAWIATIIGEPVLKKPTVALTACGG
Ga0170819_149021921	3300031469	Forest Soil	LGEGPVLGVGVGLGVAVAVAVAVGVGVGVGVPPPAGARIATVIGDPVLKKATVASVVCGG
Ga0170818_1128477142	3300031474	Forest Soil	VAVGVAVGVAPPAGAWIATVIGDPVLKNPTVALVVCGG
Ga0310888_101855671	3300031538	Soil	VAVAVAVAVGVGVAVAVGVGVGVGVPLPAGAWIATIMGDPVLKNPTVAFVLAGG
Ga0310888_102874022	3300031538	Soil	VAVAVGVDVGVAVAVAVAVGVGVGVPPPPGAWIPTVMGDPVLKKPTVALALCGG
Ga0307469_119576361	3300031720	Hardwood Forest Soil	VGVEVAVAVAVAVAVGVGVGVPPPPGAWIPTVMGDPVLKKPTVALALCGG
Ga0307477_107976871	3300031753	Hardwood Forest Soil	VAVAVAVAVAVAVGLVVGVGVGLAPPPGARIATIIGKPVLKKPTVALAFC
Ga0310900_103416132	3300031908	Soil	VAVAVAVGVEVAVAVAVAVGVGVGVPPPPGAWIPTVMGDPVLKNPTVALALCGG
Ga0306923_119049771	3300031910	Soil	VGLGVAVGLAVGVGVGVPPAGAWIATIIGAPVLKNPTVALAACGG
Ga0310901_106125641	3300031940	Soil	VAVVVAVAVAVGVGVGVPPPPGAWIPIVMGDPVLKKPTVALALCGG
Ga0310884_106656252	3300031944	Soil	VGLGVAVAVAVAVAVAVAVGVGVGVPPPAGAWIATVIGDPVLKNPTVALAFCGG
Ga0306926_103441932	3300031954	Soil	VGLGVAVGVGVGVPPAGAWIATIIGAPVLKNPTVALAACGG
Ga0318533_111534972	3300032059	Soil	LVVGVDVGDGVGLAAGVGVGVPPPGAWIATVIGDPV
Ga0307471_1012991182	3300032180	Hardwood Forest Soil	VAVAVAVAVAVGVGLAGLAVGVGVGVPTPAGAWIATIIGEPVLKKPTVALAVCGG
Ga0307472_1011648612	3300032205	Hardwood Forest Soil	VGLGVAVGVAVAVGVGVPPPAGAWIATIIGDPVLKNPTVALALCGG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085665

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences