Metagenome / Metatranscriptome Family F085535

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085535
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	72 residues
Representative Sequence	MSKPKQKELTVDEVKKMIYKEIEKKKKAVDPGKFNMRIVEDTLAELEAMQQILAMIMDEEIRRKRQQTYKLS
Number of Associated Samples	72
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	10.81 %
% of genes near scaffold ends (potentially truncated)	24.32 %
% of genes from short scaffolds (< 2000 bps)	70.27 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (52.252 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil (14.414 % of family members)
Environment Ontology (ENVO)	Unclassified (26.126 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.946 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.00% β-sheet: 0.00% Coil/Unstructured: 41.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF02735	Ku	7.21
PF12697	Abhydrolase_6	2.70
PF02195	ParBc	2.70
PF00589	Phage_integrase	1.80
PF00011	HSP20	0.90
PF09360	zf-CDGSH	0.90
PF13424	TPR_12	0.90
PF07784	DUF1622	0.90
PF02743	dCache_1	0.90
PF00903	Glyoxalase	0.90
PF01844	HNH	0.90
PF00561	Abhydrolase_1	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	7.21
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.90
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	0.90
COG4828	Uncharacterized membrane protein	Function unknown [S]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.25 %
All Organisms	root	All Organisms	47.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.25 %
cellular organisms	root	All Organisms → cellular organisms	46.85 %
Viruses	superkingdom	All Organisms → Viruses	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.25 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	45.05 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.80 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.25 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	27.93 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.80 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.25 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	27.93 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.80 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.25 %
Nitrososphaeria	class	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria	26.13 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.80 %
unclassified Thaumarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota	0.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.25 %
Nitrososphaerales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales	26.13 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.80 %
Thaumarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon	0.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.25 %
Nitrososphaeraceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	26.13 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.80 %
Thaumarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon	0.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.25 %
unclassified Nitrososphaeraceae	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae	13.51 %
Nitrososphaera	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	5.41 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.80 %
Thaumarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon	0.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.25 %
Nitrososphaeraceae archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	13.51 %
Nitrososphaera	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	5.41 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.80 %
Thaumarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon	0.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_102771133	Not Available	722	Open in IMG/M
3300002568\|C688J35102_120973056	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	3914	Open in IMG/M
3300004114\|Ga0062593_100021390	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	3430	Open in IMG/M
3300004114\|Ga0062593_100277342	All Organisms → cellular organisms → Archaea	1409	Open in IMG/M
3300004156\|Ga0062589_101967711	Not Available	592	Open in IMG/M
3300005093\|Ga0062594_100322682	All Organisms → cellular organisms → Archaea	1192	Open in IMG/M
3300005329\|Ga0070683_100730211	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	949	Open in IMG/M
3300005329\|Ga0070683_101056779	Not Available	780	Open in IMG/M
3300005332\|Ga0066388_100722730	Not Available	1600	Open in IMG/M
3300005332\|Ga0066388_101906520	All Organisms → cellular organisms → Bacteria	1061	Open in IMG/M
3300005332\|Ga0066388_103554113	Not Available	796	Open in IMG/M
3300005332\|Ga0066388_103730885	All Organisms → cellular organisms → Archaea	777	Open in IMG/M
3300005337\|Ga0070682_100125550	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	1729	Open in IMG/M
3300005434\|Ga0070709_10016268	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	4244	Open in IMG/M
3300005436\|Ga0070713_100580804	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	1063	Open in IMG/M
3300005439\|Ga0070711_100039342	All Organisms → cellular organisms → Bacteria	3185	Open in IMG/M
3300005439\|Ga0070711_101031307	Not Available	707	Open in IMG/M
3300005614\|Ga0068856_100136901	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	2455	Open in IMG/M
3300005614\|Ga0068856_101540946	Not Available	678	Open in IMG/M
3300005615\|Ga0070702_100502007	Not Available	891	Open in IMG/M
3300005896\|Ga0075282_1032528	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	708	Open in IMG/M
3300006755\|Ga0079222_10006099	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	4060	Open in IMG/M
3300006755\|Ga0079222_10254359	Not Available	1108	Open in IMG/M
3300006755\|Ga0079222_10952349	Not Available	730	Open in IMG/M
3300006755\|Ga0079222_12400567	Not Available	528	Open in IMG/M
3300006804\|Ga0079221_11357959	Not Available	562	Open in IMG/M
3300006806\|Ga0079220_10064911	Not Available	1777	Open in IMG/M
3300006852\|Ga0075433_10020793	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	5494	Open in IMG/M
3300006852\|Ga0075433_10090418	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	2706	Open in IMG/M
3300006854\|Ga0075425_100028897	All Organisms → cellular organisms → Archaea	6138	Open in IMG/M
3300006854\|Ga0075425_100085930	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	3562	Open in IMG/M
3300006854\|Ga0075425_100177494	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	2446	Open in IMG/M
3300006854\|Ga0075425_100524669	Not Available	1363	Open in IMG/M
3300006871\|Ga0075434_102492559	Not Available	518	Open in IMG/M
3300006871\|Ga0075434_102636955	Not Available	503	Open in IMG/M
3300006903\|Ga0075426_10227658	Not Available	1355	Open in IMG/M
3300006904\|Ga0075424_100168281	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon	2324	Open in IMG/M
3300006954\|Ga0079219_10039331	All Organisms → cellular organisms → Archaea	1947	Open in IMG/M
3300006954\|Ga0079219_10341288	Not Available	956	Open in IMG/M
3300006954\|Ga0079219_11173801	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	661	Open in IMG/M
3300006954\|Ga0079219_11827317	Not Available	570	Open in IMG/M
3300009036\|Ga0105244_10567043	Not Available	522	Open in IMG/M
3300009162\|Ga0075423_10954983	All Organisms → cellular organisms → Archaea	910	Open in IMG/M
3300009174\|Ga0105241_12186671	Not Available	548	Open in IMG/M
3300010358\|Ga0126370_10001268	All Organisms → cellular organisms → Archaea	11425	Open in IMG/M
3300010362\|Ga0126377_10039673	Not Available	4042	Open in IMG/M
3300010371\|Ga0134125_10204416	All Organisms → cellular organisms → Archaea	2198	Open in IMG/M
3300010373\|Ga0134128_10192981	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	2296	Open in IMG/M
3300010373\|Ga0134128_11186565	Not Available	842	Open in IMG/M
3300010375\|Ga0105239_11468950	Not Available	787	Open in IMG/M
3300010375\|Ga0105239_12075045	Not Available	660	Open in IMG/M
3300010396\|Ga0134126_10077929	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	4107	Open in IMG/M
3300010396\|Ga0134126_10249789	All Organisms → cellular organisms → Archaea	2099	Open in IMG/M
3300010401\|Ga0134121_11061766	Not Available	800	Open in IMG/M
3300011003\|Ga0138514_100001189	All Organisms → cellular organisms → Archaea	3167	Open in IMG/M
3300011119\|Ga0105246_10332259	Not Available	1239	Open in IMG/M
3300011119\|Ga0105246_10633038	Not Available	929	Open in IMG/M
3300012212\|Ga0150985_115943924	Not Available	1565	Open in IMG/M
3300012212\|Ga0150985_116551614	Not Available	674	Open in IMG/M
3300012212\|Ga0150985_122229682	Not Available	828	Open in IMG/M
3300012882\|Ga0157304_1031140	Not Available	736	Open in IMG/M
3300012885\|Ga0157287_1042571	Not Available	688	Open in IMG/M
3300012908\|Ga0157286_10086617	All Organisms → cellular organisms → Archaea	891	Open in IMG/M
3300012951\|Ga0164300_10092871	Not Available	1307	Open in IMG/M
3300012957\|Ga0164303_10000013	All Organisms → cellular organisms → Archaea	27465	Open in IMG/M
3300012957\|Ga0164303_10005403	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	4041	Open in IMG/M
3300012961\|Ga0164302_11342527	Not Available	580	Open in IMG/M
3300012985\|Ga0164308_10119485	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	1892	Open in IMG/M
3300012987\|Ga0164307_10160188	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	1492	Open in IMG/M
3300013096\|Ga0157307_1022713	All Organisms → Viruses → Predicted Viral	1046	Open in IMG/M
3300013297\|Ga0157378_10159431	All Organisms → cellular organisms → Archaea	2109	Open in IMG/M
3300013297\|Ga0157378_11473338	Not Available	725	Open in IMG/M
3300014745\|Ga0157377_10235272	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	1180	Open in IMG/M
3300014969\|Ga0157376_11377482	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	736	Open in IMG/M
3300015371\|Ga0132258_10126235	Not Available	6091	Open in IMG/M
3300015371\|Ga0132258_10280013	Not Available	4092	Open in IMG/M
3300015372\|Ga0132256_100533490	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	1285	Open in IMG/M
3300015373\|Ga0132257_100031758	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	5727	Open in IMG/M
3300015373\|Ga0132257_100262121	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	2067	Open in IMG/M
3300015374\|Ga0132255_100144204	All Organisms → cellular organisms → Archaea	3310	Open in IMG/M
3300015374\|Ga0132255_100239078	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	2590	Open in IMG/M
3300019356\|Ga0173481_10009041	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	2767	Open in IMG/M
3300019356\|Ga0173481_10118405	Not Available	1046	Open in IMG/M
3300019361\|Ga0173482_10176433	Not Available	855	Open in IMG/M
3300019361\|Ga0173482_10555694	Not Available	568	Open in IMG/M
3300019362\|Ga0173479_10750776	Not Available	533	Open in IMG/M
3300020069\|Ga0197907_11341089	Not Available	614	Open in IMG/M
3300020078\|Ga0206352_10110970	Not Available	545	Open in IMG/M
3300020080\|Ga0206350_10104799	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	1123	Open in IMG/M
3300020610\|Ga0154015_1150167	Not Available	534	Open in IMG/M
3300025898\|Ga0207692_10177278	All Organisms → cellular organisms → Archaea	1239	Open in IMG/M
3300025901\|Ga0207688_10640895	Not Available	671	Open in IMG/M
3300025905\|Ga0207685_10560632	Not Available	609	Open in IMG/M
3300025915\|Ga0207693_10039030	All Organisms → cellular organisms → Archaea	3738	Open in IMG/M
3300025928\|Ga0207700_10810336	Not Available	838	Open in IMG/M
3300026078\|Ga0207702_11043640	Not Available	811	Open in IMG/M
3300027725\|Ga0209178_1090841	Not Available	1012	Open in IMG/M
3300027765\|Ga0209073_10011361	All Organisms → cellular organisms → Archaea	2420	Open in IMG/M
3300027775\|Ga0209177_10003561	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	3040	Open in IMG/M
3300027775\|Ga0209177_10015616	All Organisms → cellular organisms → Archaea	1792	Open in IMG/M
3300027775\|Ga0209177_10132122	Not Available	828	Open in IMG/M
3300027775\|Ga0209177_10138475	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	814	Open in IMG/M
3300031938\|Ga0308175_100288245	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	1668	Open in IMG/M
3300031938\|Ga0308175_100515560	Not Available	1273	Open in IMG/M
3300031938\|Ga0308175_100552651	All Organisms → cellular organisms → Archaea	1232	Open in IMG/M
3300031938\|Ga0308175_100967380	Not Available	940	Open in IMG/M
3300031938\|Ga0308175_102165203	Not Available	623	Open in IMG/M
3300031939\|Ga0308174_10374071	Not Available	1142	Open in IMG/M
3300031996\|Ga0308176_10641442	Not Available	1096	Open in IMG/M
3300031996\|Ga0308176_12712039	Not Available	527	Open in IMG/M
3300032074\|Ga0308173_10028457	Not Available	3852	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.47%
Host-Associated	Host-Associated	31.53%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.47%
Plants	Host-Associated → Plants	31.53%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.71%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.92%
Loam	Environmental → Terrestrial → Soil → Loam	15.32%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	8.11%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.60%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.90%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	18.02%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.81%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	8.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	8.11%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.60%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.90%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	14.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.51%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	8.11%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.11%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.41%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.41%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.60%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.60%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.60%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.70%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.90%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.90%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005896	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_204	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012882	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2	Environmental	Open in IMG/M
3300012885	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020610	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1027711332	3300000956	Soil	MPRPKQKELTVDEVKKMIYKEIEKKKKAVDPGKFNIRIVEDILAELEAMQQILAMIMDEEIRRKRQQTNKLS*
C688J35102_1209730565	3300002568	Soil	MPKPKQKGLTIAEVKKMIYKEIEKKKKTVDQAKSNMRIVEDNLAEVEAMQQILAMIMDEEIRRKRQTDQQIKLG*
Ga0062593_1000213907	3300004114	Soil	LAKTKEKELTVNEVKDMIYKAIQKKQKAVDPEKFNMRIVEDNLAEVEAMQQIYAMILDEENRRKRGTQPTGKTGRILK*
Ga0062593_1002773423	3300004114	Soil	MSKPKQKELTVDEVKKMIYKEIEKKKKAVDPGKFNMRIVEDTLAELEAMQQILAMIMDEEIRRKRQQTYKLS*
Ga0062589_1019677111	3300004156	Soil	MSKPKQKELTVDEVKKMIYKEIEKKKKAVDPGRFNMRIVEDTLAELEAMQQILAMIMDEEIRRKRQQTYKLS*
Ga0062594_1003226821	3300005093	Soil	MSKPKQKELTVGEVKKMIYKEIEKKKKAVDPGKFNMRIVEDTLAELEAMQQILAMIMDEEIRRKRQQTYKLS*
Ga0070683_1007302111	3300005329	Corn Rhizosphere	MSKPKQKELTVDEVKKMIYKEIEKKKKAVDPGKFNMRIVEDTLAELEAMQQILAMIMD
Ga0070683_1010567793	3300005329	Corn Rhizosphere	MQKRKGPTVDDTKKMNYKEIQKKQKQVDPGKFIRRIVEDTLAELEAMQQILAMIMDEEIRRKRQQTYKLS*
Ga0066388_1007227302	3300005332	Tropical Forest Soil	MPKPKELTVDEVKKMIYKEIEKKQKQVDPEKFNMRIVEDNLAELEAIQFILAMIIDEENRRRNV*
Ga0066388_1019065201	3300005332	Tropical Forest Soil	LIEPKSKELTVAEVKKIIYEHSKEQKVVDQEKINIQIVEYNLAEVEAMQQIY
Ga0066388_1035541131	3300005332	Tropical Forest Soil	MSLPKEKRKGTDLTVKEVKDMIYKAIQKKQKAVYPEKFNMRIVEDNLAEVEAMQQIYAMILDEENRRKRHLTNKS*
Ga0066388_1037308851	3300005332	Tropical Forest Soil	KSKELTVAEVKKMIYKEIQKKQKAVDPEKFNTRIVEDNLAEVEAIQQIYAMILGEENRRKRQTDQQMKLR*
Ga0070682_1001255502	3300005337	Corn Rhizosphere	VIYKAIQKKQKAVDPEKFNMRIVEDNLAEVEAMQQIYAMILDEENRRKRGIQPTRKTGRILK*
Ga0070709_100162685	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MQKRKGPTVDDTKKMNYKEIQKKQKQVDPGKFNMRIVEDTLAELEAMQQILAMIMGEENRRKTQTDLLMKLA*
Ga0070713_1005808042	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSKPKQKELTVGEVKKMIYKEIEKKKKAVDPGKFNMRIVEDTLAELEAMQQILAMIMGEENRRKTQTDLLMKLA*
Ga0070711_1000393424	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MPKPKQKGLTVEEVKKMIYKEIEKQKKAVDPGKFNMRIVEDNLAEVEAMQQIYAMILDEENQKKRQTD*
Ga0070711_1010313072	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MIYKAIQKKQKAVDPEKFNMRIVEDNLAEVEAMQQIYAMILDEENRRKRGIQPTRKTGRILK*
Ga0068856_1001369011	3300005614	Corn Rhizosphere	MQKRKGPTVDDTKKMNYKEIQKKQKQVDPGKFIRRIVEDTLAELEAMQQILAMIMDEENRSKTQTDLLMKLA*
Ga0068856_1015409461	3300005614	Corn Rhizosphere	LAKTKEKELTVNEVKDMIYKAIQKKQKAVDPEKFNMRIVEDNLAEVEAMQQIYAMILDEENRRKRGIQPTRKTGRILK*
Ga0070702_1005020073	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MSKPKQKELTVDEVKKMIYKEIEKKKKAVDPGKFNMRIVEDTLAELEAMQQILSMIMDEEIRRKRQQTYKLS*
Ga0075282_10325282	3300005896	Rice Paddy Soil	MQKRKELTVDDIKKMIYKEIQKKQKQVDPDKHNMRIVEDNLTEVETLQFVLAMIMEEEQLRKRQTDQLMKLG*
Ga0079222_100060992	3300006755	Agricultural Soil	MPKPKQKELTIAEVKKMIYKEIEKKKKAVDPAKSNMRIVEDNLAEVEAMQQILAMIMDEEIRRKRQTDQQIKLG*
Ga0079222_102543591	3300006755	Agricultural Soil	MQKRKGPTVDDIKKMNYKEIQKKQKQVDPGKFIRRIVEDTLAELEAMQQILAMIMDEENRSKTQTDLLMKLA*
Ga0079222_109523491	3300006755	Agricultural Soil	LPKPNPKELTVDEVKKMIYNEIQKKQKVVDPEKFNTRIVEDNLAEVEAMQQIYAMILDEENRRKRGIQPTRKTGRILK*
Ga0079222_124005671	3300006755	Agricultural Soil	LTRTKEKELTVKEVKDVIYKAIQKKQKAVDPEKFNMRIVEDNLAEVEAMQQIYAMILDEENRRKRGIQPTRKTGRILK*
Ga0079221_113579591	3300006804	Agricultural Soil	VDEVKKMIYNEIQKKQKAVDPEKFNTRIVEDNLAEVEAMQQIYAMILDEEHRRKRGIQPTRKTGRILK*
Ga0079220_100649111	3300006806	Agricultural Soil	TCRSSMPKPKQKELTIAEVKKMIYKEIEKKKKAVDPAKSNMRIVEDNLAKIEAMQQILAMIMDEEIRRKRQTDQQIKLG
Ga0075433_100207937	3300006852	Populus Rhizosphere	LPKPNPKELTVDEVKKMIYNEIQKKQKAVDPEKTNTRIVEDNLAEVEAMQQIYAMILDEEHRRKRGIQPTRKTGRILK*
Ga0075433_100904183	3300006852	Populus Rhizosphere	MSKPNQKELTVDEVKKMIYKEIEKKKKAVDPGKFNMRIVEDTLAELEAMQQILAMIMDEEIRRKRQQTYKLS*
Ga0075425_1000288977	3300006854	Populus Rhizosphere	LPKPNPKELTVDEVKKMIYNEIQKKQKAVDPEKFNTRIVEDNLAEVEAMQQIYAMILDEEHRRKRGIQPTRKTGRILK*
Ga0075425_1000859302	3300006854	Populus Rhizosphere	MINKAIQTKQKAVDPEKFNTRIVEDNLAEVEAMQQIYAMILDEENRRKRGIQPTRKTGRILK*
Ga0075425_1001774942	3300006854	Populus Rhizosphere	MQKRKGPTVDDIKKMIYKEIQIKQKQVDPDKHNMRIVEDTLTEVETLQFVLAMITHEERLRKTQIDN*
Ga0075425_1005246691	3300006854	Populus Rhizosphere	LAKTKEKELTVNEVKDMIYKAIQKKQKAVDPAKSNMRIVEDNLAEVEAMQQIYAMILDEENRRKRGTQPIGKTERILK*
Ga0075434_1024925592	3300006871	Populus Rhizosphere	LPKPNPKELTVDEVKKMIYNEIQKKQKAVDPERFNTRIVEDNLAEVEAMQQIYAMILDEENRRNRGIQPARKTGRILK*
Ga0075434_1026369551	3300006871	Populus Rhizosphere	TRVPLPPVLLTIEISTCRSSMPKPKQKELTIAEVKKMIYKEIEKKKKAVDPAKSNMRIVEDNLAEVETMQQILTMIMDEEIRRKRQADQQIKLG
Ga0075426_102276582	3300006903	Populus Rhizosphere	VDEVKKMIYNEIQKKQKAVDPEKTNTRIVEDNLAEVEAMQQIYAMILDEENRRKRGIQPTRKTGRILK*
Ga0075424_1001682812	3300006904	Populus Rhizosphere	LAKTKEKELTVNEVKDMINKAIQTKQKAVDPEKFNTRIVEDNLAEVEAMQQIYAMILDEENRRKRGIQPTRKTGRILK*
Ga0079219_100393313	3300006954	Agricultural Soil	MQKRKGPTVDDTKKMNYKEIQKKQKQVDPGKFIRRIVEDTLAELEAMQQILAMIMDEENRSKTKTDLLMKLA*
Ga0079219_103412881	3300006954	Agricultural Soil	MPKPKQKELTIAEVKKMIYKEIEKKKKAVDPAKSNMRIVEDNLAKIEAMQQILAMIMDEEIRRKRQTDQQIKLG*
Ga0079219_111738012	3300006954	Agricultural Soil	CMQKRKGPTVDDIKKMIYKEIQIKQKQVDPDKHNMRIVEDNLTEVETLQFMLAMITDEERLRKTQIDQLMKLG*
Ga0079219_118273171	3300006954	Agricultural Soil	VPLPPVLLTIEIATYRSSMSKPKQKELTVGEVKKMIYKEIEKKKKAVDPGKFNMRIVEDTLAELEAMQQVLAMIMDEEIRRKR
Ga0105244_105670431	3300009036	Miscanthus Rhizosphere	MSKPKQKELTVDEVKKMIYKEIEKKKKAVDPGRFNMRIVEDTLAELEAMQQILAMIMDEEIRR
Ga0075423_109549831	3300009162	Populus Rhizosphere	LTRTKEKELTVNEVKDMIYKAIQKKQKAVDPEKFNMRIVEDNLAEVEAMQQIYAMILDEENRRKRGIQPTRKTGRILK*
Ga0105241_121866711	3300009174	Corn Rhizosphere	LPKPNLKELTVDEVKKMIYNEIQKKQKAVDPEKFNTRIVEDNLAEVEAMQQIYAMILDEENRRKKGTQPTRKTGRILK*
Ga0126370_1000126812	3300010358	Tropical Forest Soil	LPKEKRKGTDLTVKEVKDMIYKAIQKKQKAVYPEKFNMRIVEDNLAEVEAMQQIYAMILDEENRRKRHLTNK*
Ga0126377_100396734	3300010362	Tropical Forest Soil	MPKPKELTVDEVKKMIYKEIEKKQKQVDPEKFNMRIVEDNLAEVEAIQFILAMIIDEENRRRNV*
Ga0134125_102044162	3300010371	Terrestrial Soil	MQKRKGPTVDDIKKMIYKEIQIKQKQVDPDKHNMRIVEDNLTEVETLQFMLAMITDEERLRKTHIDQLMKLG*
Ga0134128_101929811	3300010373	Terrestrial Soil	MQKRKGPTVDDIKKMIYKEIQIKQKQVDPDKHNMRIVEDTLTEVETLQFVLAMITDEERLRKTQVDQLMKLG*
Ga0134128_111865651	3300010373	Terrestrial Soil	LPKPNPKELTVDEVKKMIYNEIQKKQKAVDPEKFNTRIVEDNLAEVEAMQQIYAMILDEEHRRKGGIQPTRKTGRILE*
Ga0105239_114689501	3300010375	Corn Rhizosphere	MQKRKGPTVDDIKKMIYKEIQIKQKQVDPDKHNMRIVEDNLTEVETLQFVLAMITDEERLRKTQIDQLMKLG*
Ga0105239_120750451	3300010375	Corn Rhizosphere	MPKPKQKELTIAEVKKMIYEEIEKKKKAVDPGKFNMRIVEDTLAELEAMQQILAMIMDEEIRRKRQQTYKLS*
Ga0134126_100779292	3300010396	Terrestrial Soil	MQKRKGPTVDDIKKMIYKEIQIKQKQVDPDKHNMRIVEDNLTEVETLQFVLAMITDEERLRKTHIDQLMKLG*
Ga0134126_102497892	3300010396	Terrestrial Soil	MSKPKQKELAVGEVKKMIYKEIEKKKKAVDPGKFNMRIVEDTLAELEAMQQILAMIMDEEIRRKRQQTYKLS*
Ga0134121_110617661	3300010401	Terrestrial Soil	LPKSKSKALTVAEVKKMIYKEIQKKQMTVDPEKFNMRIVEDNLAEVEAIQQIYAMILDEE
Ga0138514_1000011892	3300011003	Soil	LPKSKTKSNELTVAEVKKMIYKEIQKKQKQVDPEKFNMRIVEDNLAEVEAMQFILAMIIDEERQRIGN*
Ga0105246_103322591	3300011119	Miscanthus Rhizosphere	MPKPKQKELTIAEVKKMIYEEIEKKKKAVDPAKSNMRIVEDNLAELEAMQQILAMIMDEEIRRKRQTDQQIKLG*
Ga0105246_106330381	3300011119	Miscanthus Rhizosphere	LPKPNPKELTVDEVKKMIYNEIQKKQKAVDPEKFNTRIVEDNLAEVEAMQQIYAMILDEENRRKKGTQPTRKTGRILK*
Ga0150985_1159439242	3300012212	Avena Fatua Rhizosphere	LPTSKSKELTVAEVKKMIYKEIQQKQKAVDPEKFNTRIVEDNLAEVEVIQQIYAMTLDEENQKKRQIDQQMTLG*
Ga0150985_1165516142	3300012212	Avena Fatua Rhizosphere	MPKPKQKGLTIAEVNKMIYKEIEKKKKTVDQAKSNMRIVEDNLAEVEAMQQILAMIMDEEIRRKRQTDQQIKLG*
Ga0150985_1222296821	3300012212	Avena Fatua Rhizosphere	LAKTKEKELTVNEVKDMIYKAIQKKQKAVDPEKFNMRIVEDNLAEVEAMQQIYAMILDEENRRKRGIQPTRKTGKF*
Ga0157304_10311401	3300012882	Soil	MLKPNQKELTVDEVKKMIYKEIEKKKKAVDPGKFNMRIVEDTLAELEAMQQILAMIMDEEI*
Ga0157287_10425712	3300012885	Soil	MSKPKQKELTVDEVKKMIYKEIEKKKKAVDPGRFNMRIIEDTLAELEAMQQILAMIMDEEIRRKRQQTYKLS*
Ga0157286_100866171	3300012908	Soil	MSKPKQKELTVDEVKKMIYKEIEKKKKAVDPGKFNMRIVEDTLAELEAMQQILAMIMDEEI*
Ga0164300_100928713	3300012951	Soil	LPRSKSKALTVAEVKKMIYKEIQKKQKTVDPEKFNMRIVEDNLAEVEAIQQIYAMILDEE
Ga0164303_1000001312	3300012957	Soil	LTRTKEKELTVKEVKDVIYKAIQKKRKAVDPEKFNMRIVEDNLAEVEAMQQIYAMILDEENRRKRGIQPTRKTGRILK*
Ga0164303_100054035	3300012957	Soil	MPKPKQKELTIAEVKKMIYEEIEKKKKAVDPAKSNMRIVEDNLAELEAMQQILARIMDEEIRRKRQTDQQIKLG*
Ga0164302_113425271	3300012961	Soil	MSKPNKKELTVDQVKKMIYKEIEKKKKAVDPGKFNMRIVEDTLAELEAMQQILAMIMDEEIRRKRQQTYKLS*
Ga0164308_101194851	3300012985	Soil	LAKTKEKELTVNEVKDMIYKAIQKKRKAVDPEKFNMRIVEDNLAEVEAMQQIYAMILDEENRRKRGIQPTRKTGRILK*
Ga0164307_101601883	3300012987	Soil	LTRTKEKELTVKEVKDVIYKAIQKKRKAVDPEKFNMRIVEDNLAEVEAMQQIYAMILDEE
Ga0157307_10227131	3300013096	Soil	DMIYKAIQKKQKAVDPEKFNMRIVEDNLAEVEAMQQIYAMILDEENRRKRGTQPTGKTGRILK*
Ga0157378_101594312	3300013297	Miscanthus Rhizosphere	MQKRKGPTVDDTKKMNYKEIQKKQKQVDPGKFNMRIVEDTLAELEAMQQILAMIMDEEIRRKRQQTYKLS*
Ga0157378_114733381	3300013297	Miscanthus Rhizosphere	TRTKEKELTVKEVKDVIYKAIQKKQKAVDPEKFNTRIVEDNLAEVEAMQQIYAMILDEEHRRKRGIQPTRKTGRILK*
Ga0157377_102352722	3300014745	Miscanthus Rhizosphere	MQKRKGPTVDDTKKMNYKEIQKKRKQVDPGKFNMRIVEDTLAELEAMQQILAMIMDEENRSKTQTDLLMKLA*
Ga0157376_113774822	3300014969	Miscanthus Rhizosphere	MPKPKQKELTIAEVKKMIYEEIEKKKKAVDPGRFNMRIIEDTLAELEAMQQILAMIMGEENRRKTQTDLLMKLA*
Ga0132258_1012623512	3300015371	Arabidopsis Rhizosphere	LPKPNPKELTVDEVKKMIYNEIQKKQKAVDPEKFNTRIVEDNLAEVEAMQQIYAMILDEENRRKRGIQPTRKTER*
Ga0132258_102800132	3300015371	Arabidopsis Rhizosphere	LPKSKTKELTVAEVKKMIYKEIQKKQKAVDPEKFNTRIVEDNLAEVEAIQQIYAMILDEENRRKRQIDQQMKLG*
Ga0132256_1005334902	3300015372	Arabidopsis Rhizosphere	MQKRKGPTVDDIKKMNYKEIQKKQKQVDPDKFNMRIVEDTLAELEATQQILAMIMDEENRRKTQTDLLMKLA*
Ga0132257_1000317584	3300015373	Arabidopsis Rhizosphere	MSKPKQKELTVGEVKKMIYKEIEKKKKAVDPGKFNMRIVEDTLAELEAMQQILSMIMDEEIRRKRQQTYKLS*
Ga0132257_1002621214	3300015373	Arabidopsis Rhizosphere	IEYHDCMQKRKGPTVDDIKKMIYKEIQIKQKQVDPDKHNMRIVEDNLTEVETLQFMLAMITDEERLRKTQIDQLMKLG*
Ga0132255_1001442044	3300015374	Arabidopsis Rhizosphere	PKPKQKELTIAEVKKMIYKEIEKKKKAVDPAKSNMRIVEDNLAEVEAMQQILAMIMDEEIRRKRQTDQQIKLG*
Ga0132255_1002390782	3300015374	Arabidopsis Rhizosphere	MQKRKGPTVDDIKKMIYKEIQIKQKQVDPDKHNMRIVEDNLTEVETLQFMLAMITDEERLRKTQIDN*
Ga0173481_100090412	3300019356	Soil	LAKTKEKELTVNEVKDMIYKAIQKKQKAVDPEKFNMRIVEDNLAEVEAMQQIYAMILDEENRRKRGTQPTGKTGRILK
Ga0173481_101184051	3300019356	Soil	MSKPKQKELTVDEVKKMIYKEIEKKKKAVDPGKFNMRIVEDTLAELEAMQQILAMIMDEEIXRKRQQTYKLS
Ga0173482_101764332	3300019361	Soil	MLKPNQKELTVDEVKKMIYKEIEKKKKAVDPGKFNMRIVEDTLAELEAMQQILAMIMDEEIXRKRQQTYKLS
Ga0173482_105556941	3300019361	Soil	KEKELTVNEVKDMIYKAIQKKQKAVDPEKFNMRIVEDNLAEVEAMQQIYAMILDEENRRKRGTQPTGKTGRILK
Ga0173479_107507761	3300019362	Soil	MSKPKQKELTVDEVKKMIYKEIEKKKKAVDPGRFNMRIIEDTLAELEAMQQILAMIMDEEIRRKRQQTYKLS
Ga0197907_113410892	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	TKEKELTVKEVKDVIYKAIQKKQKAVDPEKFNMRIVEDNLAEVEAMQQIYAMILDEENRRKRGIQPTRKTGRILK
Ga0206352_101109701	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	LTRTKEKELTVKEVKDVIYKAIQKKQKAVDPEKFNMRIVEDNLAEVEAMQQIYAMILDEENRRKRGIQPTRKTGRILK
Ga0206350_101047992	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	MQKRKGPTVDDIKKMIYKEIQIKQKQVDPDKHNMRIVEDNLTEVETLQFVLAMITDEERLRKTQIDQLMKLG
Ga0154015_11501672	3300020610	Corn, Switchgrass And Miscanthus Rhizosphere	KEKELTVKEVKDVIYKAIQKKQKAVDPEKFNMRIVEDNLAEVEAMQQIYAMILDEENRRKRGIQPTRKTGRILK
Ga0207692_101772782	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MSKPKQKELTVGEVKKMIYKEIEKKKKAVDPGKFNMRIVEDTLAELEAMQQILAMIMDEEIRRKR
Ga0207688_106408952	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MSKPKQKELTVDEVKKMIYKEIEKKKKAVDPGKFNMRIVEDTLAELEAMQQILAMIMDEEIRRKRQQTYKLS
Ga0207685_105606321	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MSKPKQKELTVGEVKKMIYKEIEKKKKAVDPGKFNMRIVEDTLAELEAMQQILAMIMDEEIRRKRQQTYKLS
Ga0207693_100390302	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSKPKQKELTVGEVKKMIYKEIEKKKKAVDPGKFNMRIVEDTLAELEAMQQILAMIMDEEIRRKRQQTYKLT
Ga0207700_108103362	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MSKPKQKELTVGEVKKMIYKEIEKKKKAVDPGKFNMRIVEDTLAELEAMQQILAMIMGEENRRKTQTDLLMKLA
Ga0207702_110436401	3300026078	Corn Rhizosphere	MQKRKGPTVDDTKKMNYKEIQKKQKQVDPGKFIRRIVEDTLAELEAMQQILAMIMDEENRSKTQTDLLMKLA
Ga0209178_10908411	3300027725	Agricultural Soil	GMPKPKQKELTIAEVKKMIYKEIEKKKKAVDPAKSNMRIVEDNLAKIEAMQQILAMIMDEEIRRKRQTDQQIKLG
Ga0209073_100113611	3300027765	Agricultural Soil	MPKPKQKELTIAEVKKMIYKEIEKKKKAVDPAKSNMRIVEDNLAKIEAMQQILAMIMDEEIRRKRQTDQQIKLG
Ga0209177_100035616	3300027775	Agricultural Soil	DCMQKRKGPTVDDIKKMIYKEIQIKQKQVDPDKHNMRIVEDNLTEVETLQFMLAMITDEERLRKTQIDQLMKLG
Ga0209177_100156161	3300027775	Agricultural Soil	MQKRKGPTVDDIKKMIYKEIQIKQKQVDPDKHNMRIVEDTLTEVETLQFVLAMITHEER
Ga0209177_101321221	3300027775	Agricultural Soil	MQKRKGPTVDDTKKMNYKEIQKKQKQVDPGKFIRRIVEDTLAELEAMQQILAMIMDEENRSKTQTDLL
Ga0209177_101384751	3300027775	Agricultural Soil	LAKTKEKELTVNEVKDMIYKAIQKKQKAVDPEKFNMRIVEDNLAEVEAMQQIYAMILDEENRRKRGIQPTRKTGRILK
Ga0308175_1002882452	3300031938	Soil	LAEVKKMIYKEIQKKKKSVSPEKFKTRIVEDRLAEKEAMQQIYAMILNEELRRETIRPTKRLG
Ga0308175_1005155601	3300031938	Soil	LQKRKELTVKDIIKLIYKEIQKKQKTVDPEKFNTRIVEDNMTEVEAMQQIYAMILDEEPRIRRQTDLQRKSG
Ga0308175_1005526512	3300031938	Soil	LAKTKEKELTVNEVKDMIYKAIQKKQKAVDPEKFNTRIVEDNLAEVEAMQQIYAMILDEEDRRKRGTQPTRKTGILK
Ga0308175_1009673801	3300031938	Soil	VNEVKDMIYKAIQKKQKAVDPEKFNTRIVEDNLAEVEAMQQIYAMILDEENRRKRGTQPTRKTGRILK
Ga0308175_1021652031	3300031938	Soil	YKAIQKKQKAVDPEKFNTRIVEDNLAEVEAMQQIYAMILDEENRRKRGIQPTRKTGRILK
Ga0308174_103740711	3300031939	Soil	LQKRKELTVKDIIKLIYKEIQKKQKTVDPEKFNTRIVEDNMAEVEAMQQIYAMILDEEPRIRRQTDLKRKSG
Ga0308176_106414422	3300031996	Soil	LQKRKELTVKDIIKLIYKEIQKKEQKTVDPEKFNTRIVEDNLAEVEAMQQIYAMILDEEPRIRRQTDLQRKSG
Ga0308176_127120391	3300031996	Soil	PKELTVNEVKDMIYKAIQKKQKAVDPEKFNMRIVEDNLAEVEAMQQIYAMILDEENRRKRGIQPTRKTGRILK
Ga0308173_100284572	3300032074	Soil	LQKRKELTVKDIIKLICKEIQKKQKTVDPEKFNTRIVEDNMAEVEAMQQIYAMILDEEPRIRRQTDLKRKSG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085535

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences