NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F085529

Metagenome / Metatranscriptome Family F085529

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F085529
Family Type Metagenome / Metatranscriptome
Number of Sequences 111
Average Sequence Length 86 residues
Representative Sequence MDLLLSTHDTGYERPDGPTIAKVLASLDGGRNVVATLGTSDATYLQASGSVQTGFGLYLQEGSLDRRFRTRDRALPLAWVTEAFQ
Number of Associated Samples 103
Number of Associated Scaffolds 111

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 39.09 %
% of genes near scaffold ends (potentially truncated) 98.20 %
% of genes from short scaffolds (< 2000 bps) 88.29 %
Associated GOLD sequencing projects 100
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (51.351 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(10.811 % of family members)
Environment Ontology (ENVO) Unclassified
(33.333 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(32.432 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 17.65%    β-sheet: 34.12%    Coil/Unstructured: 48.24%
Feature Viewer
Powered by Feature Viewer


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 111 Family Scaffolds
PF00441Acyl-CoA_dh_1 61.26
PF02771Acyl-CoA_dh_N 13.51
PF02770Acyl-CoA_dh_M 12.61
PF01325Fe_dep_repress 2.70
PF02742Fe_dep_repr_C 1.80
PF00753Lactamase_B 1.80
PF04023FeoA 1.80
PF00072Response_reg 0.90
PF00155Aminotran_1_2 0.90

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 111 Family Scaffolds
COG1960Acyl-CoA dehydrogenase related to the alkylation response protein AidBLipid transport and metabolism [I] 87.39
COG1321Mn-dependent transcriptional regulator MntR, DtxR familyTranscription [K] 1.80
COG1918Fe2+ transport protein FeoAInorganic ion transport and metabolism [P] 1.80


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms51.35 %
UnclassifiedrootN/A48.65 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000890|JGI11643J12802_10716486Not Available513Open in IMG/M
3300000953|JGI11615J12901_10614059Not Available1557Open in IMG/M
3300002245|JGIcombinedJ26739_100531021All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1054Open in IMG/M
3300003347|JGI26128J50194_1013083All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium521Open in IMG/M
3300004052|Ga0055490_10279484All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium519Open in IMG/M
3300005093|Ga0062594_101225429Not Available746Open in IMG/M
3300005093|Ga0062594_103370546All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium502Open in IMG/M
3300005183|Ga0068993_10001169All Organisms → cellular organisms → Bacteria4219Open in IMG/M
3300005204|Ga0068997_10004869All Organisms → cellular organisms → Bacteria1699Open in IMG/M
3300005290|Ga0065712_10118110All Organisms → cellular organisms → Bacteria1711Open in IMG/M
3300005294|Ga0065705_10508895Not Available772Open in IMG/M
3300005329|Ga0070683_100377751Not Available1350Open in IMG/M
3300005467|Ga0070706_101801306Not Available556Open in IMG/M
3300005468|Ga0070707_101672994Not Available603Open in IMG/M
3300005544|Ga0070686_100357482Not Available1099Open in IMG/M
3300005549|Ga0070704_102062830Not Available530Open in IMG/M
3300005578|Ga0068854_101116203Not Available703Open in IMG/M
3300006755|Ga0079222_10253960All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1108Open in IMG/M
3300006804|Ga0079221_10880125Not Available654Open in IMG/M
3300006854|Ga0075425_100432077Not Available1516Open in IMG/M
3300006854|Ga0075425_100449292Not Available1484Open in IMG/M
3300007265|Ga0099794_10711716Not Available535Open in IMG/M
3300009078|Ga0105106_10884595Not Available635Open in IMG/M
3300009089|Ga0099828_10102831All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2474Open in IMG/M
3300009147|Ga0114129_10344487All Organisms → cellular organisms → Bacteria1975Open in IMG/M
3300009174|Ga0105241_12067742All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium562Open in IMG/M
3300009176|Ga0105242_12057953All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium614Open in IMG/M
3300009792|Ga0126374_11070632Not Available637Open in IMG/M
3300009807|Ga0105061_1037088All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium707Open in IMG/M
3300009819|Ga0105087_1127184Not Available500Open in IMG/M
3300010159|Ga0099796_10078328All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1207Open in IMG/M
3300010358|Ga0126370_12224575Not Available541Open in IMG/M
3300010400|Ga0134122_10709625All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium946Open in IMG/M
3300011406|Ga0137454_1097969Not Available515Open in IMG/M
3300012205|Ga0137362_11159081All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium656Open in IMG/M
3300012355|Ga0137369_10266081All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1288Open in IMG/M
3300012361|Ga0137360_11227437All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium649Open in IMG/M
3300012685|Ga0137397_10055135All Organisms → cellular organisms → Bacteria2858Open in IMG/M
3300012896|Ga0157303_10235557Not Available550Open in IMG/M
3300012906|Ga0157295_10379057Not Available521Open in IMG/M
3300012907|Ga0157283_10009000Not Available1620Open in IMG/M
3300012917|Ga0137395_10964910All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium613Open in IMG/M
3300012988|Ga0164306_11668558Not Available552Open in IMG/M
3300014321|Ga0075353_1148940All Organisms → cellular organisms → Bacteria → Proteobacteria589Open in IMG/M
3300015053|Ga0137405_1058699All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1212Open in IMG/M
3300015201|Ga0173478_10016812All Organisms → cellular organisms → Bacteria2012Open in IMG/M
3300015259|Ga0180085_1006885All Organisms → cellular organisms → Bacteria3117Open in IMG/M
3300015371|Ga0132258_13475675Not Available1080Open in IMG/M
3300015373|Ga0132257_100852111Not Available1140Open in IMG/M
3300017927|Ga0187824_10161002All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium748Open in IMG/M
3300018031|Ga0184634_10019827All Organisms → cellular organisms → Bacteria2537Open in IMG/M
3300018074|Ga0184640_10450812All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium572Open in IMG/M
3300019259|Ga0184646_1097910All Organisms → cellular organisms → Bacteria1691Open in IMG/M
3300020003|Ga0193739_1088914All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium783Open in IMG/M
3300020004|Ga0193755_1140487Not Available740Open in IMG/M
3300020580|Ga0210403_10448445Not Available1051Open in IMG/M
3300021090|Ga0210377_10360412Not Available874Open in IMG/M
3300021171|Ga0210405_11153403Not Available577Open in IMG/M
3300021432|Ga0210384_11674405Not Available541Open in IMG/M
3300021972|Ga0193737_1044494Not Available638Open in IMG/M
3300022756|Ga0222622_10038352All Organisms → cellular organisms → Bacteria2618Open in IMG/M
3300023057|Ga0247797_1007859Not Available1222Open in IMG/M
3300023073|Ga0247744_1036598Not Available766Open in IMG/M
3300025167|Ga0209642_10253706All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1006Open in IMG/M
3300025560|Ga0210108_1037548Not Available912Open in IMG/M
3300025916|Ga0207663_10486897All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium956Open in IMG/M
3300025923|Ga0207681_10607814All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium904Open in IMG/M
3300025931|Ga0207644_11680471Not Available532Open in IMG/M
3300025935|Ga0207709_11271633Not Available607Open in IMG/M
3300025944|Ga0207661_10337711Not Available1357Open in IMG/M
3300025955|Ga0210071_1006425All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1347Open in IMG/M
3300025961|Ga0207712_10908987Not Available778Open in IMG/M
3300026118|Ga0207675_101558985Not Available681Open in IMG/M
3300026345|Ga0257148_1017948Not Available570Open in IMG/M
3300026351|Ga0257170_1001594All Organisms → cellular organisms → Bacteria2269Open in IMG/M
3300026356|Ga0257150_1022372All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium892Open in IMG/M
3300026358|Ga0257166_1015051All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium990Open in IMG/M
3300027395|Ga0209996_1015221Not Available1049Open in IMG/M
3300027650|Ga0256866_1116432Not Available723Open in IMG/M
3300027731|Ga0209592_1234029All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium640Open in IMG/M
3300027787|Ga0209074_10095840Not Available995Open in IMG/M
3300027846|Ga0209180_10009712All Organisms → cellular organisms → Bacteria4944Open in IMG/M
3300027882|Ga0209590_10739751Not Available628Open in IMG/M
3300027903|Ga0209488_10476323All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium917Open in IMG/M
3300027910|Ga0209583_10533386All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium586Open in IMG/M
3300027915|Ga0209069_10902397Not Available535Open in IMG/M
3300028047|Ga0209526_10090120All Organisms → cellular organisms → Bacteria2159Open in IMG/M
3300028784|Ga0307282_10036361All Organisms → cellular organisms → Bacteria2152Open in IMG/M
3300028824|Ga0307310_10151350Not Available1071Open in IMG/M
3300028828|Ga0307312_10355611Not Available958Open in IMG/M
3300029636|Ga0222749_10712820All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium549Open in IMG/M
(restricted) 3300031150|Ga0255311_1142497All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium530Open in IMG/M
(restricted) 3300031197|Ga0255310_10035094Not Available1298Open in IMG/M
(restricted) 3300031197|Ga0255310_10216646All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium538Open in IMG/M
(restricted) 3300031197|Ga0255310_10235837All Organisms → cellular organisms → Bacteria517Open in IMG/M
(restricted) 3300031248|Ga0255312_1052817All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium973Open in IMG/M
(restricted) 3300031248|Ga0255312_1089454All Organisms → cellular organisms → Bacteria → Proteobacteria748Open in IMG/M
(restricted) 3300031248|Ga0255312_1089808All Organisms → cellular organisms → Bacteria746Open in IMG/M
3300031562|Ga0310886_10977223All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium542Open in IMG/M
3300031720|Ga0307469_11286857All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium694Open in IMG/M
3300031820|Ga0307473_11004193Not Available609Open in IMG/M
3300031858|Ga0310892_10798602Not Available654Open in IMG/M
3300032174|Ga0307470_10728525All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium759Open in IMG/M
3300032180|Ga0307471_101010744Not Available998Open in IMG/M
3300032180|Ga0307471_103555748All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium551Open in IMG/M
3300032205|Ga0307472_101370780All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium684Open in IMG/M
3300032892|Ga0335081_12068070Not Available605Open in IMG/M
3300032954|Ga0335083_11320091All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium554Open in IMG/M
3300033417|Ga0214471_11497547Not Available506Open in IMG/M
3300033433|Ga0326726_10014737All Organisms → cellular organisms → Bacteria → Proteobacteria6829Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil10.81%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil10.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil7.21%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil7.21%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil5.41%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands4.50%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.60%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil2.70%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.70%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment1.80%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment1.80%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil1.80%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.80%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.80%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.80%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.80%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.80%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.80%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand1.80%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.80%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere1.80%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.80%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.80%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.90%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.90%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.90%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.90%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil0.90%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.90%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.90%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil0.90%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.90%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.90%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.90%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.90%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.90%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.90%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000890Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000953Soil microbial communities from Great Prairies - Kansas Corn soilEnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300003347Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PMHost-AssociatedOpen in IMG/M
3300004052Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D2EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005183Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1EnvironmentalOpen in IMG/M
3300005204Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D2EnvironmentalOpen in IMG/M
3300005290Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1Host-AssociatedOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009078Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015EnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300009807Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10EnvironmentalOpen in IMG/M
3300009819Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_40_50EnvironmentalOpen in IMG/M
3300010159Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300011406Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT539_2EnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012896Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2EnvironmentalOpen in IMG/M
3300012906Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1EnvironmentalOpen in IMG/M
3300012907Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1EnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012988Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MGEnvironmentalOpen in IMG/M
3300014321Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D1EnvironmentalOpen in IMG/M
3300015053Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015201Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)EnvironmentalOpen in IMG/M
3300015259Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10DEnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300017927Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4EnvironmentalOpen in IMG/M
3300018031Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1EnvironmentalOpen in IMG/M
3300018074Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2EnvironmentalOpen in IMG/M
3300019259Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020003Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2EnvironmentalOpen in IMG/M
3300020004Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300021090Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redoEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021972Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2m2EnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300023057Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6EnvironmentalOpen in IMG/M
3300023073Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S154-409C-5EnvironmentalOpen in IMG/M
3300025167Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2 (SPAdes)EnvironmentalOpen in IMG/M
3300025560Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025955Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026345Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-AEnvironmentalOpen in IMG/M
3300026351Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-BEnvironmentalOpen in IMG/M
3300026356Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-AEnvironmentalOpen in IMG/M
3300026358Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-BEnvironmentalOpen in IMG/M
3300027395Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027650Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 HiSeqEnvironmentalOpen in IMG/M
3300027731Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027787Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300027915Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028784Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121EnvironmentalOpen in IMG/M
3300028824Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197EnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031150 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4EnvironmentalOpen in IMG/M
3300031197 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1EnvironmentalOpen in IMG/M
3300031248 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5EnvironmentalOpen in IMG/M
3300031562Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300032954Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2EnvironmentalOpen in IMG/M
3300033417Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155EnvironmentalOpen in IMG/M
3300033433Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MNEnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI11643J12802_1071648613300000890SoilMDLLLLSTHDTGYERPDGPTIAKVLGSLDGGRNVQATLGASDSTYLQATGSVQSGFGLDLQEGSLERRYRTRDRALPLPWVTEGFQRYARG
JGI11615J12901_1061405913300000953SoilMDLLLLSTHDTGYERPDGPTIAKVLGSLDGGRNVQATLGASDSTYLQATGSVQSGFGLDLQEGSLER
JGIcombinedJ26739_10053102123300002245Forest SoilMELMLSTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDSSYLQASGSVQTGFGLDLQEGSIEQRLRTRDRALPLAWVTEAFQRYARADLGW
JGI26128J50194_101308323300003347Arabidopsis Thaliana RhizosphereVELLLSTHDTGYERPDGPTIAKVLASLDGGRNVVATLGTSDSSYLQATGGVQTGFGLDLQEGSLERRFRTRDRALPLAWVTEVFHRYARGDLAWRDTVEWEQD
Ga0055490_1027948413300004052Natural And Restored WetlandsMELLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTTDATYLQASGSVQTGFGLDLQEGSLKRRFRTRDRALPLPWVTEAFQRYAAGDLSWRGAVEWEQEH
Ga0062594_10122542913300005093SoilMDLLLLSTHDTGYERPDGPTIAKVLGSLDGGRNVQATLGASDSTYLQATGSVQSGFGLDLQEG
Ga0062594_10337054613300005093SoilMDLLLTTHDTGYPQPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSVPTGFGLDLQEGSLARRFRTRDRALPLAWVTEAFQRYAIGDLSWRGTVEWEQEYIKVP
Ga0068993_1000116953300005183Natural And Restored WetlandsMELLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGASDATYLQASGSVQTGFGLYLQEGSLARRFRTRDRALPLPWVTEAFQRYAAGDL
Ga0068997_1000486913300005204Natural And Restored WetlandsMELLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSVQTGFGLYLQEGSLARRFRTRDRALPLPWVTEAFQRYAAGDLAWRDAVAWEQEHIH
Ga0065712_1011811033300005290Miscanthus RhizosphereMDLLLLSTHDTGYERPDGPTIAKVLGSLDGGRNVQATLGASDSTYLQATGSVQSGFGLDLQEGSLERRYRTRDRAL
Ga0065705_1050889523300005294Switchgrass RhizosphereMDLLLTTHDTGYPQPDGPTIAKVLASLDGGRNVLATLGVSDATYLQASGSVQTGFGLYLQEGSLARRF
Ga0070683_10037775123300005329Corn RhizosphereMDLLLLSTHDTGYERPDGPTIAKVLGSLDGGRNVQATLGASDSTYLQATGSVQSGFGLDLQEGSLERRYRTRDRALPLPWVTE
Ga0070706_10180130623300005467Corn, Switchgrass And Miscanthus RhizosphereMDLMLSTHDTGYERPDGSTIAKVLASLDGGRNVLATLGTSDSSYIQASGSVQAGFGLDLQ
Ga0070707_10167299423300005468Corn, Switchgrass And Miscanthus RhizosphereMELMLSTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDSSYLQASGSVQSGFGLDLQEGSIERRFRTRDR
Ga0070686_10035748223300005544Switchgrass RhizosphereMDLLLLSTHDTGYERPDGPTIAKVLGSLDGGRNVQATLGASDSTYLQATGSVQSGFGLDLQEGSLERRY
Ga0070704_10206283013300005549Corn, Switchgrass And Miscanthus RhizosphereMDLMLSTHDTGYEQPDGPTIAKVLASLDGGRNVLATLGTSDSSYLQASGSVQSGFGLDLQEGSIERRFRTRDRALPLAWVTEAFQRYA
Ga0068854_10111620323300005578Corn RhizosphereMDLLLTTHDTGYPQPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSVPTGFGLDLQEGSLARRFRTRDRALPLAWVTE
Ga0079222_1025396023300006755Agricultural SoilMELMLSTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDSSYLQASGSVQSGFGLDLQEGSIERRFRTRDRALPLARVTEAFQRYARADLGWRDQV
Ga0079221_1088012513300006804Agricultural SoilMELMLSTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDSSYLQASGSVQSGFGLDLQEGSIERRFRTRD
Ga0075425_10043207733300006854Populus RhizosphereMDVMLSTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDSSYLQASGSVQSGFGLDLQEGSIERRFRTRDRAL
Ga0075425_10044929213300006854Populus RhizosphereMELMLSTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDSSYLQASGSVQSGFGLDLQEGSIERRFRTRDRAL
Ga0099794_1071171613300007265Vadose Zone SoilMDLLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSGQTGFGLYLQEGSLDRRFRTRDRALPL
Ga0105106_1088459513300009078Freshwater SedimentMELLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTTDATYLQASGSVQTGFGLDLQEGSLKRRFRT
Ga0099828_1010283113300009089Vadose Zone SoilMAMILSTHDTGYERPDDATIAKVLASLDGGRSVLATLGPTDENYVQAHGSARTGFGLDLQDGSLERRYRSKNRALPLDW
Ga0114129_1034448713300009147Populus RhizosphereMDLMLSTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDSSYLQASGSVQTGFGLDLQEGSIEQRFRTRDRALPLAWVTEAFQRYARADLGWRDQVEWEQD
Ga0105241_1206774213300009174Corn RhizosphereMDLLLTTHDTGYPQPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSVPTGFGLDLQEGSLARRFRTRDRALPLAWVTEAFQRYAIGDLSWRGTVEWEQEHIKVPRE
Ga0105242_1205795313300009176Miscanthus RhizosphereMDLMLSTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDSSYIQASGSVQAGFGLDLQEGSIERRFRTRDRALPLAWVTEVFQRYARADLGWR
Ga0126374_1107063213300009792Tropical Forest SoilLTVDLLLSTHDTGYERPDGSTIAKVLASLDGGLNMVATLGGSDSAYLQAVGSVGTGFGLDLQEGSLDQRY
Ga0105061_103708813300009807Groundwater SandMELLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSVQTGFGLYLQEGSLARRFRTRDRALPLPWVTEAFQRYAKGDLTWRDAVE
Ga0105087_112718423300009819Groundwater SandMDLMLSTHDTGYERPDNPTIAKVLASLDGGRNVVATLGTSDVTYLQASGSVQTGFGLDLQEGSLER
Ga0099796_1007832823300010159Vadose Zone SoilMDLMLSTHDTGYERPDEPTIAKVLASLDGGRNVLATLGTSDSSYIQASGSVQAGFGLDLQEGSIERRFRTRDRALPLAWVTEAFQRYARADLGWR
Ga0126370_1222457523300010358Tropical Forest SoilLAVDLLLSTHDTGYERPDGFTIAKVLASLDGGLNMVATLGGSDSAYLQAVGSVGAGFGLDLQEGSLDRRYRTRDRA
Ga0134122_1070962523300010400Terrestrial SoilMELLLSTHDTGYERPDGPTIAKVLASLDGGRNVVATLGISDATYVQASGSVQTGFGLDLQEGSLARRFRTRDRALPLAWVTEAFQRYATG
Ga0137454_109796923300011406SoilMELLLTTHDTGYQRPDGPTIAKVLASLDGGRNVLATLGISDATYLQASGSVQTGFGLYLQEGSLARRFRTRDRA
Ga0137362_1115908113300012205Vadose Zone SoilMDLMLSTHDTGYERPDEPTIAKVLASLDGGRNVLATLGTSDSSYIQASGSVQAGFGLDLQEGSIERRFRTRDRALPLAWVTEAFQRYARADLGW
Ga0137369_1026608113300012355Vadose Zone SoilMDLLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSVQTGFGLYLQEGSLDRRLRTRDRALPLAWVTEAFQRYATGDLA
Ga0137360_1122743713300012361Vadose Zone SoilMDLMLSTHDTGYEQPDGPTIAKVLASLDGGRNVLATLGTSDSSYIQASGSVQAGFGLDLQEGSIERRFRTRDRALPLAWVTEAFQRYARADLGWRDQVEWEQERIV
Ga0137397_1005513513300012685Vadose Zone SoilMNLLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDATYLQSSGSVQTGFGLYLQEGSLDRRLRTRDRALPLAWVTEAFQRYATGD
Ga0157303_1023555723300012896SoilMDLLLLSTHDTGYERPDGPTIAKVLGSLDGGRNVQATLGASDSTYLQATGSVQSGFGLDLQEGSLERRYR
Ga0157295_1037905713300012906SoilVELLLSTHDTGYERPDGPTIAKVLASLDGGRNVVATLGTSDSSYLQATGGVQTGFGLDLQ
Ga0157283_1000900013300012907SoilVELLLSTHDTGYERPAGPTIAKVLASLDGGRNVVATLGTSDSSYLQATGGVQTGFGLDLQEGS
Ga0137395_1096491023300012917Vadose Zone SoilMDLMLSTHDTGYEQPDGPTIAKVLASLDGGRNVLATLGTSDSTYIQASGSVQAGFGLDLQEGSIERRFRTRDRGLPLGWVTEAFQRYARADLGWRDQVEWEQERI
Ga0164306_1166855823300012988SoilMDLLLLSTHDTGYERPDGPTIAKVLGSLDGGRNVQATLGASDSTYLQATGSVQSGFGLDLQEGSLERRYRTRDRALPLPWVTEVF
Ga0075353_114894013300014321Natural And Restored WetlandsMELLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSVQTGFGLYLQEGSLARRFRTRDRALPLPWVTEAFQRYAAGDLAWRDAVAWEQEHIHVPRES
Ga0137405_105869913300015053Vadose Zone SoilMNLLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSVQTGFGLYLQEGSLDRRLRTRDRALPLAWVTEAFQRYATGDLSWRDAVAWEQDRITVSRANPG*
Ga0173478_1001681213300015201SoilVELLLSTHDTGYERPDGPTIAKVLASLDGGRNVVATLGTSDSSYLQATGGVQTGFGLDLQEGSLERRFRTRDRALPLAWVTEV
Ga0180085_100688543300015259SoilMDLLLSTHDTGYERPDGPTIAKVLASLDGGRNVVATLGTSDATYLQASGSVQTGFGLYLQEGSLDRRFRTRDRALPLAWVTEAFQ
Ga0132258_1347567513300015371Arabidopsis RhizosphereMELMLSTHDTGYERPDGPTIAKVLASLDGGRNVLATLGVSDSSYLQATGSVQSGFGLDLQEGSIERRFRTRDRALPLGWVTEVFQRY
Ga0132257_10085211123300015373Arabidopsis RhizosphereVDLLLSTHDTGYERPDGPTIAKVLASLDGGRNVVATLGTSDSAYLPATGGVQTGFGLDLQEGSLERRFRTRDRGLPLAWVTEAFERYA
Ga0187824_1016100213300017927Freshwater SedimentMELMLSTHDTGYERPDGPTIAKVLASLDGGRNVLATLGVSDSSYLQATGSVQSGFGLDLQEGSIERRFRTRDRALPLGWVTEVFQRYAQGDLGWRDQV
Ga0184634_1001982713300018031Groundwater SedimentMDLLLTTHDTGYERPDEPTIAKVLASLDGGRNVVATLGTSDATYLQASGSGQTGFGLYLQEGSLARRFRTRDRALPLAWVTEAFQRYATGDL
Ga0184640_1045081223300018074Groundwater SedimentMDLLLTTHDTGYERPDEPTIAKVLASLDGGRNVLATLGTSDATYLQASGSGQTGFGLYLQEGSLDRRFRTRDRALPLAWVTEAFQRYA
Ga0184646_109791013300019259Groundwater SedimentMDLLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSVQTGFGLYLQEGSLDRRFRTRDRALPLAWVT
Ga0193739_108891423300020003SoilMDLLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSVQTGFGLYLQEGSLDRRFRTRDRALPLAWVTEAFQRYAADDLSWRDAVAWEQEH
Ga0193755_114048723300020004SoilMNLLLTTHDTGYERPDGPTIAKLLASLDGGRNVLATLGTSDATYLQASGSVQTGFGLYLQEGSLDRRLRTRDRALPLAWV
Ga0210403_1044844523300020580SoilLDLLLSTHDTGYERPDGPTIAKVLASLDGGRNVLATLGNADASYLQASGSVQAGFGLDLQEGSLDHHYRTRDRALPLAWVTEAFQRYAQDDL
Ga0210377_1036041213300021090Groundwater SedimentMDLMLSTHDTGYDRPDGPTIAKVLASLDGGRNVVATLGTSDSTYLQASGSVQAGFGLDLQEGSLERRFRTRDRALPLPWVTEAFQR
Ga0210405_1115340313300021171SoilMDVMLSTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDSSYLQASGSVQTGFGLDLQEG
Ga0210384_1167440523300021432SoilMDVMLSTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDSSYLQASGSVQTGFGLDLQ
Ga0193737_104449423300021972SoilMDLLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSVQTGFGLYLQEGSLDRRLRTRDRALPLA
Ga0222622_1003835243300022756Groundwater SedimentMDLLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGASDATYLQASGSVQTGFGLYLQEGSLERRLRTRDRALPLPWVTEAFQRYAAGDLAWRDAVAWEQDRI
Ga0247797_100785923300023057SoilVELLLSTHDTGYERPDGPTIAKVLASLDGGRNVVATLGTSDSSYLQATGGVQTGFGLDLQEGSLERRFRTRDRALPLAWVTEVFHR
Ga0247744_103659823300023073SoilVELLLSTHDTGYERPDGPTIAKVLASLDGGRNVVATLGTSDSSYLQATGGVQTGFGLDLQEGSLERRFRTRDRALPLAWVTEVFHRY
Ga0209642_1025370623300025167SoilMPMTLSTHDTGYERLDNDTIAKVLASLDGGRNVLATLGASDEHYLQAQGSVQTGFGLDLQEGSLERHYRTTNRALPLEWVT
Ga0210108_103754823300025560Natural And Restored WetlandsMELLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSVQTGFGLYLQEGSLARRFRTR
Ga0207663_1048689723300025916Corn, Switchgrass And Miscanthus RhizosphereMELMLSTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDSSYLQASGSVQSGFGLDLQEGSIERRFRTRDRALPLAWVTEAFQRYARADLGWRDQV
Ga0207681_1060781413300025923Switchgrass RhizosphereMDLLLTTHDTGYPQPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSVPTGFGLDLQEGSLARRFRTRDRALPLAWVTEAFQRYAIGDL
Ga0207644_1168047123300025931Switchgrass RhizosphereMDLLLLSTHDTGYERPDGPTIAKVLGSLDGGRNVQATLGASDSTYLQATGSVQSGFGLDLQEGSLERRYRTRDRALPLPWVTEVFQR
Ga0207709_1127163313300025935Miscanthus RhizosphereMELMLSTHDTGYERPDGSTIAKVLASLDGGRNVLATLGTSDSSYLQATGSVQSGFGLDLQEGSIERRFRTRDRALPL
Ga0207661_1033771113300025944Corn RhizosphereMDLLLLSTHDTGYERPDGPTIAKVLGSLDGGRNVQATLGASDSTYLQATGSVQSGFGLDLQEGSLERRYRTRDRALPLPWVTEV
Ga0210071_100642513300025955Natural And Restored WetlandsMELLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSVQTGFGLYLQEGSLARRFRTRDRALPLPWVTEAFQRYAAGD
Ga0207712_1090898723300025961Switchgrass RhizosphereMDLLLLSTHDTGYERPDGPTIAKVLGSLDGGRNVQATLGASDSAYLQATGSVQSGFGLDLQEGSLE
Ga0207675_10155898523300026118Switchgrass RhizosphereMDLLLTTHDTGYPQPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSVPTGFGLDLQEGSLARRFRTRDRAL
Ga0257148_101794813300026345SoilMDLMLSTHDTGYERPDEPTIAKVLASLDGGRNVLATLGTSDSSYIQASGSVQAGFGLDLQEGSIERRFRTRDRALPLAWVTEA
Ga0257170_100159443300026351SoilMDLLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSGQTGFGLYLQEG
Ga0257150_102237223300026356SoilMDLMLSTHDTGYERPDEPTIAKVLASLDGGRNVLATLGTSDSSYIQASGSVQAGFGLDLQEGSIERRFRTRDRALPLAWVTEAFQRYARADLGWRDQVEWEQERIVVPRD
Ga0257166_101505113300026358SoilMDLLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSVQTGFGLYLQEGSLDRRLRTRDRALPLAWVTEAFQRYATGDLS
Ga0209996_101522113300027395Arabidopsis Thaliana RhizosphereVELLLSTHDTGYERPDGPTIAKVLASLDGGRNVVATLGTSDSSYLQATGGVQTGFGLDLQEGSLERRYRTRDRALPLPWVTEVFQR
Ga0256866_111643223300027650SoilMDLLLTTHDTGYQRPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSVQTGFGLDLQ
Ga0209592_123402913300027731Freshwater SedimentMELLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTTDATYLQASGSVQTGFGLDLQEGSLKRRFRTRDRALPLPWVTEAFQRYAAGD
Ga0209074_1009584013300027787Agricultural SoilMDLLLLSTHDTGYERPDGPTIAKVLGSLDGGRNVQATLGASDSTYLQATGSVQSGFGLDLQEGSLERRYRTRDRALPLPWVT
Ga0209180_1000971263300027846Vadose Zone SoilMDLLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSGQTGFGLYLQEGSLDRRFRTRDRALPLAWVTEAFQRYAADDL
Ga0209590_1073975113300027882Vadose Zone SoilMNLLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSVQTGFGLYLQEGSLDRRLRTRDRALPLPW
Ga0209488_1047632313300027903Vadose Zone SoilMDLLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSGQTGFGLYLQEGSLDRRFRTRDRALPLAWVTEAFQRYAADDLSWRDAVAWEQEHIH
Ga0209583_1053338623300027910WatershedsMDVMLSTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDSSYVQASGSVQAGFGLDLQEGSIERHFRTRDRALPLAWVTEVFQRYA
Ga0209069_1090239713300027915WatershedsLDLLLSTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTADASYLQASGSVQAGFGLDLQEGS
Ga0209526_1009012033300028047Forest SoilMELMLSTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDSSYLQASGSVQTGFGLDLQEGSIEQRLRTRDR
Ga0307282_1003636133300028784SoilMNLLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSVQTGFGLYLQEGSLDRRVRTRDRALP
Ga0307310_1015135023300028824SoilMNLLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSVQTGFGLYLQEGSLDRR
Ga0307312_1035561123300028828SoilMNLLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSVQTGFGLYLQEGSLDRRVRTRDRALPL
Ga0222749_1071282013300029636SoilMDVMLSTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDSSYLQASGSVQTGFGLDLQEGSIERRFRTRDRALPLAWVTEAFQRYARADLGWRDQVEWEQDRIVVPGES
(restricted) Ga0255311_114249723300031150Sandy SoilMDLMLSTHDTGYERPDGPTISKVLASLDGGRNVLATLGVSDSSYLQATGSVQSGFGLDLQEGSIERRFRTRDRALPLGWVTEVFQRYAQGDLGWRDQVEW
(restricted) Ga0255310_1003509423300031197Sandy SoilMELLLTTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTTDATYLQASGSVQTGFGLDLQEGSLERR
(restricted) Ga0255310_1021664623300031197Sandy SoilMDLLLSTHDTGYERPDGPTIAKVLASLDGDRNVVATLGTTDSTYLQASGSVQTGFGLDLQEGSLERRFRSLDRALPLAWVTEAFQRYATGDLAW
(restricted) Ga0255310_1023583723300031197Sandy SoilMLSTHDTGYERPDGPMIAKVLASLDGGRNVVATLGTSDSTYLQASGSVQTGFGLDLQEGSLERRFRTRDRALPLPWVTEAFQRYATGDQAWRETVEWERERIAVRKES
(restricted) Ga0255312_103176513300031248Sandy SoilMAMILSTHDTGYERPDDATIAKVLASLDGGRSVLATLGPADENYVQAHGSVRTGFGLDLQDGSLERRYRSKNRALPLDWVTEAFQKYAKGDLSWRHEVEWEKDEIRRPDT
(restricted) Ga0255312_105281713300031248Sandy SoilMDLLLTTHDTGYPRPDGPTIAKVLASLDGGRNVLATLGASDATYLQASGSVQTGFGLYLQEGSLARRFRTRDRALPLAWVTEAFQ
(restricted) Ga0255312_108945413300031248Sandy SoilMDLLLSTHDTGYERPDGPTIAKVLASLDGDRNVVATLGTTDSTYLQASGSVQTGFGLDLQEGSLERRFRSLDRALPLAWVTEAFQRYATGDLAWRDAMEWER
(restricted) Ga0255312_108980813300031248Sandy SoilVDLMLSTHDTGYERPDGPMIAKVLASLDGGRNVVATLGTSDSTYLQASGSVQTGFGLDLQEGSLERRFRTRDRALPLPWVTEAFQRYATGDQAWRETVEWERERIAVRKESWT
Ga0310886_1097722323300031562SoilMELMLSTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDSSYLQATGSVQSGFGLDLQEGSIERRFRTRDRALPLGWVTEVFQRYAQGDLGWRDQVEWEQERIVLP
Ga0307469_1128685713300031720Hardwood Forest SoilVDLLLTTHDTGYQRPDGPTIAKVLASLDGGRNVLATLGTSDATYLQASGSVQTGFGLDLQEGSLARRFRTRDRALPLAWVTEAFQRY
Ga0307473_1100419323300031820Hardwood Forest SoilVDLMLSTHDTGYERPDGPTIAKVLASLDGGRNVVATLGTSDSTYLQASGSVQTGFGLDLQEGSLERRFRTRDRALPLPW
Ga0310892_1079860223300031858SoilVDLLLSTHDTGYERPDGPTIAKVLASLDGGRNVVATLGTSDSTYLQVTGGVQTGFGLDLQEGS
Ga0307470_1072852523300032174Hardwood Forest SoilMELMLSTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDSSYLQASGSVQTGFGLDLQEGSIERRFRTRDRALPLAWVTEAFQRYARADLGWRDQVEWEQDRIVVPGES
Ga0307471_10101074423300032180Hardwood Forest SoilMDLLLTTHDTGYPRPDGPTIAKVLASLDGGRNVLATLGVSDATYLQASGSVQTGFGLYLQ
Ga0307471_10355574823300032180Hardwood Forest SoilMELMLSTHDTGYERPDGPTIAKVLASLDGGRNVLATLGTSDSSYLQASGSVQSGFGLDLQEGSIERRFRTRDRALPLAWVTEAFQRYARADLGWRDQVEWEQDRIVVPTE
Ga0307472_10137078013300032205Hardwood Forest SoilMDLMLSTHDTGYERPDEPTIAKVLASLDGGRNVLATLGTSDSSYIQASGSVQAGFGLDLQEGSIERRFRTRDRALPLAWVTEAFQRYARADLGWRDQVEWEQERIVVP
Ga0335081_1206807013300032892SoilVDLLLSTHDTGYERPDGPTIAKVLASLDGGRNVVATLGTAEASYLQATGSVQAGFGLDLQEGSLDRRFLTRDRTLPLAWVTESF
Ga0335083_1132009113300032954SoilMDSTLSTHDTGYERPDGPTIAKVLASLDGGRNVVATLGISDSTYLQATGSVQTGFGLDLQEGSLERRFRTRDRALPLAWVTEAFQRYALGDLSWRETVEWEQDRIVLPK
Ga0214471_1149754713300033417SoilMDLLLTTHDTGYERPDGPTIAKVLASLDGGHNVLATLGASDVTYLQASGSVRTGFGLYLEEGSLDRRFRTRDRA
Ga0326726_1001473713300033433Peat SoilMELMLTTHDTGYERPDGPAIAKVLASLDGGRNVLATLGTSDSSYLQATGSVQSGFGLDLQEGSIERRFRTRDRALPLAWVTEAFQRYARADLGWRDQ


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.