Metagenome Family F085503

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085503
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	65 residues
Representative Sequence	MTKSTQTLTQSGLLAVLLQRQRYKVFQLARRSAHRKRVRAAFWNTLTWSRPAFTAPKLVDGPPHT
Number of Associated Samples	98
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.85 %
% of genes near scaffold ends (potentially truncated)	31.53 %
% of genes from short scaffolds (< 2000 bps)	81.08 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (96.396 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (22.523 % of family members)
Environment Ontology (ENVO)	Unclassified (43.243 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.351 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.24% β-sheet: 0.00% Coil/Unstructured: 53.76%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF00072	Response_reg	3.60
PF02036	SCP2	3.60
PF12200	DUF3597	2.70
PF07995	GSDH	2.70
PF01569	PAP2	1.80
PF01936	NYN	1.80
PF01183	Glyco_hydro_25	0.90
PF00487	FA_desaturase	0.90
PF00196	GerE	0.90
PF13231	PMT_2	0.90
PF05960	DUF885	0.90
PF03989	DNA_gyraseA_C	0.90
PF00230	MIP	0.90
PF02661	Fic	0.90
PF13590	DUF4136	0.90
PF03548	LolA	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	2.70
COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	General function prediction only [R]	1.80
COG0188	DNA gyrase/topoisomerase IV, subunit A	Replication, recombination and repair [L]	0.90
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	0.90
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.90
COG2834	Outer membrane lipoprotein-sorting protein	Cell wall/membrane/envelope biogenesis [M]	0.90
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.90
COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	Cell wall/membrane/envelope biogenesis [M]	0.90
COG4805	Uncharacterized conserved protein, DUF885 family	Function unknown [S]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.40 %
Unclassified	root	N/A	3.60 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.40 %
Unclassified	root	N/A	3.60 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.40 %
Unclassified	root	N/A	3.60 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	85.59 %
Unclassified	root	N/A	3.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	84.68 %
Unclassified	root	N/A	3.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.90 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	73.87 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	7.21 %
Unclassified	root	N/A	3.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.90 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	73.87 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	7.21 %
Unclassified	root	N/A	3.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.90 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	73.87 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	7.21 %
Unclassified	root	N/A	3.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.90 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	73.87 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	5.41 %
Unclassified	root	N/A	3.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	0.90 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.90 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	73.87 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	4.50 %
Unclassified	root	N/A	3.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	0.90 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.90 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	73.87 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	4.50 %
Unclassified	root	N/A	3.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %
Chthoniobacter flavus Ellin428	strain	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus → Chthoniobacter flavus Ellin428	0.90 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.90 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig106550	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	555	Open in IMG/M
2166559005\|cont_contig70245	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	736	Open in IMG/M
2170459005\|F1BAP7Q01B6W05	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	525	Open in IMG/M
2189573000\|GPBTN7E01BP0G4	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	526	Open in IMG/M
3300002128\|JGI24036J26619_10052511	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	796	Open in IMG/M
3300002899\|JGIcombinedJ43975_10002990	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2698	Open in IMG/M
3300002903\|JGI24801J43971_1000774	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1046	Open in IMG/M
3300005175\|Ga0066673_10529495	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300005186\|Ga0066676_10009139	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4792	Open in IMG/M
3300005186\|Ga0066676_10191575	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1309	Open in IMG/M
3300005328\|Ga0070676_11065183	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	609	Open in IMG/M
3300005328\|Ga0070676_11165144	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	584	Open in IMG/M
3300005330\|Ga0070690_100950845	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	674	Open in IMG/M
3300005335\|Ga0070666_10067327	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2431	Open in IMG/M
3300005335\|Ga0070666_10277620	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1190	Open in IMG/M
3300005367\|Ga0070667_101016962	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	773	Open in IMG/M
3300005437\|Ga0070710_11125138	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	577	Open in IMG/M
3300005441\|Ga0070700_101609908	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	555	Open in IMG/M
3300005454\|Ga0066687_10046668	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1996	Open in IMG/M
3300005456\|Ga0070678_101323940	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	671	Open in IMG/M
3300005457\|Ga0070662_100288656	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300005457\|Ga0070662_100900835	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	755	Open in IMG/M
3300005526\|Ga0073909_10088352	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1204	Open in IMG/M
3300005535\|Ga0070684_101645232	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	606	Open in IMG/M
3300005536\|Ga0070697_101237339	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	665	Open in IMG/M
3300005540\|Ga0066697_10160999	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1328	Open in IMG/M
3300005560\|Ga0066670_10077565	All Organisms → cellular organisms → Bacteria	1804	Open in IMG/M
3300005576\|Ga0066708_10791343	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	596	Open in IMG/M
3300005578\|Ga0068854_100744796	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	850	Open in IMG/M
3300005618\|Ga0068864_100412163	All Organisms → cellular organisms → Bacteria	1286	Open in IMG/M
3300005764\|Ga0066903_103629839	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	831	Open in IMG/M
3300005764\|Ga0066903_103835308	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	808	Open in IMG/M
3300005842\|Ga0068858_102236669	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	541	Open in IMG/M
3300006032\|Ga0066696_10844579	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	584	Open in IMG/M
3300006791\|Ga0066653_10031074	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2103	Open in IMG/M
3300006800\|Ga0066660_10551219	All Organisms → cellular organisms → Bacteria → Proteobacteria	967	Open in IMG/M
3300007255\|Ga0099791_10131115	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1165	Open in IMG/M
3300009098\|Ga0105245_13235860	Not Available	505	Open in IMG/M
3300009137\|Ga0066709_100127869	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3192	Open in IMG/M
3300009143\|Ga0099792_10943132	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	573	Open in IMG/M
3300010159\|Ga0099796_10528579	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	529	Open in IMG/M
3300010321\|Ga0134067_10185558	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	758	Open in IMG/M
3300011120\|Ga0150983_11003804	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	724	Open in IMG/M
3300012198\|Ga0137364_10063782	All Organisms → cellular organisms → Bacteria	2499	Open in IMG/M
3300012198\|Ga0137364_10460982	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	954	Open in IMG/M
3300012200\|Ga0137382_10439455	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	922	Open in IMG/M
3300012201\|Ga0137365_10037931	All Organisms → cellular organisms → Bacteria	3679	Open in IMG/M
3300012202\|Ga0137363_10084424	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2374	Open in IMG/M
3300012203\|Ga0137399_10161944	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1795	Open in IMG/M
3300012205\|Ga0137362_11130376	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	665	Open in IMG/M
3300012208\|Ga0137376_10094034	All Organisms → cellular organisms → Bacteria	2532	Open in IMG/M
3300012208\|Ga0137376_10287826	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1426	Open in IMG/M
3300012349\|Ga0137387_10376242	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1029	Open in IMG/M
3300012350\|Ga0137372_10079591	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2793	Open in IMG/M
3300012359\|Ga0137385_10153470	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2025	Open in IMG/M
3300012359\|Ga0137385_11313197	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	586	Open in IMG/M
3300012480\|Ga0157346_1019707	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	578	Open in IMG/M
3300012683\|Ga0137398_10102255	All Organisms → cellular organisms → Bacteria	1805	Open in IMG/M
3300012929\|Ga0137404_10431543	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1166	Open in IMG/M
3300012930\|Ga0137407_11351493	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	677	Open in IMG/M
3300012944\|Ga0137410_10356149	All Organisms → cellular organisms → Bacteria	1171	Open in IMG/M
3300012951\|Ga0164300_10083549	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1360	Open in IMG/M
3300012958\|Ga0164299_11036202	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	608	Open in IMG/M
3300012960\|Ga0164301_10866160	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	698	Open in IMG/M
3300012985\|Ga0164308_11044634	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	729	Open in IMG/M
3300012988\|Ga0164306_11376393	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	599	Open in IMG/M
3300013297\|Ga0157378_11742165	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	670	Open in IMG/M
3300014325\|Ga0163163_10565107	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1200	Open in IMG/M
3300015053\|Ga0137405_1106375	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	2033	Open in IMG/M
3300015264\|Ga0137403_10144671	All Organisms → cellular organisms → Bacteria → Proteobacteria	2347	Open in IMG/M
3300015358\|Ga0134089_10402236	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	585	Open in IMG/M
3300015372\|Ga0132256_102071584	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	675	Open in IMG/M
3300015372\|Ga0132256_102082061	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	673	Open in IMG/M
3300015373\|Ga0132257_100494592	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1499	Open in IMG/M
3300015373\|Ga0132257_100973150	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1067	Open in IMG/M
3300018054\|Ga0184621_10290114	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	578	Open in IMG/M
3300018431\|Ga0066655_10081752	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1762	Open in IMG/M
3300018433\|Ga0066667_11919195	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	541	Open in IMG/M
3300018481\|Ga0190271_13628544	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	517	Open in IMG/M
3300019877\|Ga0193722_1033701	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1322	Open in IMG/M
3300019882\|Ga0193713_1003822	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	4840	Open in IMG/M
3300019885\|Ga0193747_1000169	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	28590	Open in IMG/M
3300019886\|Ga0193727_1025976	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2045	Open in IMG/M
3300020059\|Ga0193745_1017583	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1553	Open in IMG/M
3300020579\|Ga0210407_11131457	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	592	Open in IMG/M
3300021080\|Ga0210382_10293877	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	714	Open in IMG/M
3300021082\|Ga0210380_10077485	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1456	Open in IMG/M
3300022694\|Ga0222623_10164897	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	862	Open in IMG/M
3300024330\|Ga0137417_1141823	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	537	Open in IMG/M
3300025315\|Ga0207697_10069392	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1475	Open in IMG/M
3300025899\|Ga0207642_10340776	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	881	Open in IMG/M
3300025903\|Ga0207680_10444237	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	920	Open in IMG/M
3300025910\|Ga0207684_10636279	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus → Chthoniobacter flavus Ellin428	909	Open in IMG/M
3300026328\|Ga0209802_1097023	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1333	Open in IMG/M
3300026542\|Ga0209805_1069036	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1723	Open in IMG/M
3300026550\|Ga0209474_10364963	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	792	Open in IMG/M
3300026551\|Ga0209648_10034401	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	4410	Open in IMG/M
3300027655\|Ga0209388_1034420	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1454	Open in IMG/M
3300028380\|Ga0268265_11941620	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	596	Open in IMG/M
3300028536\|Ga0137415_11031877	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	634	Open in IMG/M
3300028791\|Ga0307290_10319885	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	568	Open in IMG/M
3300031231\|Ga0170824_112498803	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	730	Open in IMG/M
3300031446\|Ga0170820_12511361	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1816	Open in IMG/M
3300031446\|Ga0170820_17048679	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	540	Open in IMG/M
3300031469\|Ga0170819_14470494	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	508	Open in IMG/M
3300031890\|Ga0306925_10034869	All Organisms → cellular organisms → Bacteria	5172	Open in IMG/M
3300032180\|Ga0307471_103869338	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	529	Open in IMG/M
3300032205\|Ga0307472_100655447	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	936	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.58%
Host-Associated	Host-Associated	21.62%
Engineered	Engineered	1.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.97%
Plants	Host-Associated → Plants	21.62%
Aquatic	Environmental → Aquatic	3.60%
Modeled	Engineered → Modeled	1.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.01%
Freshwater	Environmental → Aquatic → Freshwater	1.80%
Sediment	Environmental → Aquatic → Sediment	1.80%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	1.80%
Roots	Host-Associated → Plants → Roots	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.91%
Loam	Environmental → Terrestrial → Soil → Loam	9.01%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.31%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.80%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	1.80%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.90%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.64%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	17.12%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.41%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.70%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.80%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	1.80%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.90%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.90%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	22.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.60%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.60%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.70%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.80%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.80%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.80%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	1.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.90%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental	Open in IMG/M
3300002128	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300002903	Soil microbial communities from Manhattan, Kansas, USA - Sample 200um Nextera	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012480	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.yng.040610	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020008	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m2	Environmental	Open in IMG/M
3300020059	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0549.00006320	2166559005	Simulated	TESGMLAVLLQRQRYKGFQLARRSAHRKRVRAAFWNTLTWSRPAFTAPKLVDGPPHT
cont_0245.00004450	2166559005	Simulated	MIKSTMTLTQSGLLPVLLQRQRYKVIQLARRSARRKRVRAAFWNTLTWLRRALTARTLAGGPRHS
E41_10296720	2170459005	Grass Soil	MIKSTMTLTQSGLLPVLLQRQHYKVIQLARRSARRKRVRAAFWNTLTWLRRALTARTLAGGLRHS
N55_08963120	2189573000	Grass Soil	KRRYVMTKSTQTLTESGMLAVLLQRQRYKVFQLARRSAHRKRVRAAFWNTLTWSRPAFTAPKLVDGPPHT
JGI24036J26619_100525111	3300002128	Corn, Switchgrass And Miscanthus Rhizosphere	MTSSTQTLTQSGLLAVLLQRQRYRVIQLARRRAHRERVHAAFGDIFTRARRALTAPKLVDRPRHT*
JGIcombinedJ43975_100029904	3300002899	Soil	MTKSTQTLTQSGMLAVLLQRQRXKVFQLARRSAHRKRVRAAFWNTLTWSRPAFTAPKLVDGPPHT*
JGI24801J43971_10007742	3300002903	Soil	MTKSTQTLTQSGMLAVLLQRQRYKVFQLARRSAHRKRVRAAFWNTLTWSRPAFTAPKLVDGPPHT*
Ga0066673_105294951	3300005175	Soil	MIKSTTTLTQNGVLAVLLQRQRYKVFQLARRGAYRKQVRAAFWSALTRPWRALTAPKLLDDSAEPIVG
Ga0066676_100091393	3300005186	Soil	MIKSTMTLTQSGLLPVLLQRQRYRVIQLARRGARRKRVHAAFWNTLTWLRRALTARTLAGGPRHS*
Ga0066676_101915753	3300005186	Soil	MTKLTPTLTQSGMLAVLLQRQRYKVIQLARRRAHRKQVRAALWSTLTWPWRALTAPKLLDDSA
Ga0070676_110651831	3300005328	Miscanthus Rhizosphere	MTKSTQTLTQSGLLAVLLQRQRYKVFQLARRSAHRKRVRAAFWNTLTWSRPAFTAPKLVDGPPHT*
Ga0070676_111651441	3300005328	Miscanthus Rhizosphere	MTSSTQTLTQSGLLAVLLERQRYRAIQLARRRAHRKRVHAALEDIFTGARRALTAPKLVGRPRHT*
Ga0070690_1009508451	3300005330	Switchgrass Rhizosphere	MTKSTQTLTQSGMLAVLLQRQRYRVFQLARRSAHRKRVRAAFWNTLTWSRPAFTAPKLVDGPPHT*
Ga0070666_100673275	3300005335	Switchgrass Rhizosphere	MTSSTQTLTQSGLLAVLLERQRYRAIQLARRRAHRKRVHAALEDIFTGARRALTAPKLVDRPRHT*
Ga0070666_102776202	3300005335	Switchgrass Rhizosphere	MTKSTQTLTQSGLLAVLLQRQRYKVFQLARRSAHRKRVRAAFWNTLTWSRTAFTAPKLVDGPPNT*
Ga0070667_1006435172	3300005367	Switchgrass Rhizosphere	MNVMPKSNLTLTQSGLLAVLLQHQRYKVFQLARRRAHRKQLQAAFWSAIRWPFRAL
Ga0070667_1010169621	3300005367	Switchgrass Rhizosphere	MTKSTQTLTQSGMLAVLLQRQRYRVFQLARRSAHRKRVRAAFWNTLTWSRPAFT
Ga0070710_111251382	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MTKSTPTLTQSGLLAVLLQRQRYRVFQLARRSAHRKRVRAAFWNTLTWSRPAFTAPKLVDGPPHT*
Ga0070700_1016099082	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MTNSAQTLTQSGLLAVLLQRQRYRVIQLARRRAHRERVHAALEDIFTGARRALTAPKL
Ga0066687_100466682	3300005454	Soil	MTELTPTLTQSGHLAVLLQWQRYKAFRRARHCAYRKHLRAAFWNTLTWPSRAFAAPTLVDDSSKPLMGTIPRHT*
Ga0070678_1013239402	3300005456	Miscanthus Rhizosphere	MTKSTPTLTQSGLLAVLLERQRYRAIQLARRRARRKRVHAAFGDIFTGARRAITAPKLVGRPRHT*
Ga0070662_1002886561	3300005457	Corn Rhizosphere	MTKSTPTLTQSGLLAVLLQRQRYRVFQLARRSAHRKRVHAAFWNTLTWARRPKLVDRPSPHLNLH
Ga0070662_1009008351	3300005457	Corn Rhizosphere	MTSSTQTLTQSGLLAVLLERQRYRAIQLARRRAHRKRVRAAFGDTFTWARRALTAPKLVDRPRHT*
Ga0073909_100883523	3300005526	Surface Soil	MTKSTPTLTQSGLLAVLLQRQRYKVFQLARRSAHRKRVRAAFWNTLTWSRPAFTAPKLVDGPPHT*
Ga0070684_1016452321	3300005535	Corn Rhizosphere	MTSSTQTLTQSGLLAVLLQRQRYRVIQLARRRAHRERVHAAFGDIFTRARRALTAPKL
Ga0070697_1012373392	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MTKSTPTLTQSGLLTVLLQRRRYRVFQLARRSAHRKRVRAAFWNTLTWARRPITAPKLVDRPRYT*
Ga0066697_101609993	3300005540	Soil	MRKSTPTLTQSGLLAVLLQRQRYKVFQLARRRAHRKDLRAAFWSTLTWPWRALTAPKLLDDS
Ga0066670_100775653	3300005560	Soil	MTKSTLTLTQSGLLAVLLQHQRYRIFQLARRSAHRKRMRAAFWDNLSWPRRALTVATAASGPPHT*
Ga0066708_107913431	3300005576	Soil	MIKSTTTLTQNGVLAVLLQRQRYKVFQLARRGAYRKQVRAAFWSALTRPWRALTAPKLLDDSA
Ga0068854_1007447961	3300005578	Corn Rhizosphere	MTKSTQTLTQSGLLAVLLQRQRYRVFQLARRSAHRKRVRAAFWNTLTWSRPAFTAPKLVDGPPHT*
Ga0068864_1004121632	3300005618	Switchgrass Rhizosphere	MTSSTQTLTQSGLLAVLLERQRYRAIQLARRRAHRKRVHAALEDIFTGARRALTAPKLVDRPRH
Ga0066903_1036298392	3300005764	Tropical Forest Soil	MTRSTQTLTQSGLLAVLLECQRYKAIQSARRRVQGERVRAAFWNTLTRSRRAFTSPTLGDVAR
Ga0066903_1038353081	3300005764	Tropical Forest Soil	MTKSTQTLMQPTLTLTQSGLLALLLQRQRHRIQELARRRAQGKRLRAAFWNTLNWSRGTLPKLVEVPRHT*
Ga0068858_1022366691	3300005842	Switchgrass Rhizosphere	TLTQSGLLAVLLERQRYRAIQLARRRAHRKRVHAALEDIFTGARRALTAPKLVDRPRHT*
Ga0066696_108445792	3300006032	Soil	LTLTQSGLLAVLLQHQRYRVFQLARRSAHRKRVRAAFWDTLSWPRRALTVAAAASGAPHT
Ga0066653_100310741	3300006791	Soil	MRKSTPTLTQSGLLAVLLQRQRYKVFQLARRRAHRKDLRAAFWSTLTWPWRALTAPKLLDDSAELI
Ga0066660_105512193	3300006800	Soil	MTTLTPTLTQSGLLAVLLERQRYKVIQLARRRAHGKQVRAAFWSTFTWPFRTLTAPTLFRYDPISSPAG*
Ga0099791_101311151	3300007255	Vadose Zone Soil	MEKNVMTKSIQTLTQSGMLALLLQRQRHKVFQLARQSAHRKRVHAAFWNTLTRARLAFAAPKPVDG
Ga0105245_132358601	3300009098	Miscanthus Rhizosphere	MTKSSPTPSLTQNGLLAVLLQRQRYRVFQLARRSAHRKRVRAAFWNTLTWSRPAF
Ga0066709_1001278693	3300009137	Grasslands Soil	MTRSTQTLTQSGLLAVLLQRQRYRVIQLDRRRVHRKRVRAAFWKTLTWSRRALTAPKLVDSPGHT*
Ga0099792_109431321	3300009143	Vadose Zone Soil	MTKSVQTLTQSGLLAVLLQRQRHKVFQLARQSAHRKRVHAAFWNTLTRARLAFAAPKPVDAGAPPLNCSPGDVP*
Ga0099796_105285791	3300010159	Vadose Zone Soil	LDKKNRKLRKNYVMAKSTPTLTQSGMLAVLLQHQRYKVIQLARRRAHRKHMHATFWGTLTWPWRALT
Ga0134067_101855581	3300010321	Grasslands Soil	MTKSTSTLTQSGLLAVLLQRQRYKVFQLARRRAQRKRLRAAFWGTLTWSWRALT
Ga0150983_110038042	3300011120	Forest Soil	MTKSTETLTQSGLLAVLLQRQRDRIFQLARRRVHRKRVRAAFWNTVTWARHALTPPKLVNVSRHT*
Ga0137364_100637823	3300012198	Vadose Zone Soil	MTKLTPTLTQSGLLAVLLERQRYKVIQLARRRAHGKQVRAAFWSTFTWPFRTLTAPTLFRYDPISSPAG*
Ga0137364_104609823	3300012198	Vadose Zone Soil	MKNSKKYVMTSPATLTQSGLLAVLLQRQRYKVIQLARRRAQSKRVRAAFWNTLTWSRRALTLPTPVDVRRHT*
Ga0137382_104394552	3300012200	Vadose Zone Soil	MKNSKKYVMTSPATLTQSGLLAVLLQRQRYKVIQLARRRAQSKRVRAAFWNTLTWSRRALTLPTPVDVWRHT*
Ga0137365_100379312	3300012201	Vadose Zone Soil	MIKSTMTLTQSGLLPVLLQRQRYRVIQLARRGARRERVHAAFWNTLTWLRRALTARTLAGGPRHS*
Ga0137363_100844243	3300012202	Vadose Zone Soil	MTRSTLTLTQSGLLAVLLQRQRYRVIQLGRRRVLRKRVRAAFWKTLTWSRRALSAPKLVDSPGHT*
Ga0137399_101619443	3300012203	Vadose Zone Soil	MTKSVQTLTQSGLLAVLLQRQRHKVFQLARQSAHRKRVHAAFWNTLTRARLAFAAPKPVDGGHYT*
Ga0137362_111303761	3300012205	Vadose Zone Soil	MTRSTLTLTQSGLLAVLLQRQRYRVIQLGRRRVLRKRVRAAFWKTLTWSRRALA
Ga0137376_100940344	3300012208	Vadose Zone Soil	TQSGLLAVLLERQRYKVIQLARRRAHGKQVRAAFWSTFTWPFRTLTAPTLFRYDPISSPAG*
Ga0137376_102878263	3300012208	Vadose Zone Soil	MKNSKKYVMTSPATLTQSGLLAVLLQRQRYKVIQLARRRAQSKRVRAAFWNTLTWSRRALTSPTPVDVRRHT*
Ga0137387_103762421	3300012349	Vadose Zone Soil	MTTSPPTLTQSGLLAVLLQRQRYRAFQLARRSAHGKRMHAAFWNIFTWARRALTAPK
Ga0137372_100795912	3300012350	Vadose Zone Soil	MIKSTMTLTQGGLLPVLLQRQRYRVIQLARRGARRKRVHAAFWNTLTWLRRALTARTLAGGPRHS*
Ga0137385_101534701	3300012359	Vadose Zone Soil	MTKLTPTLTQSGLLAVLLQRQRYKVFQLARRRAHRKHLRAAFWSALTWPWRALTAPALHDDS
Ga0137385_113131971	3300012359	Vadose Zone Soil	MAKSTPTLTQSGMLAVLLQRQRYKVFQLARRHAHRKHLRAAFWSTLTWPWRALTAPKLVDESTEPI
Ga0157346_10197071	3300012480	Arabidopsis Rhizosphere	MTKSTQTLTQSGLLAVLLQRQRYKVFQLARRSAHRKRVRAAFWNTPLTWSRPAFTAPKLVDGPPQT*
Ga0137398_101022552	3300012683	Vadose Zone Soil	MTKSVQTLTQSGLLEVLLQPQRHKVFQLARQSAHRKRVHTAVWNTLTRARLAFAAPKPVDGGHYT*
Ga0137404_104315431	3300012929	Vadose Zone Soil	MTKLTPTLTQSGLLAVLLERQRYKVIQLARRRAHGKHVRAAFWSTLTWPFRALTAPTLFRYDPISPSAG*
Ga0137407_113514932	3300012930	Vadose Zone Soil	MTKSTQTLTQSGLLPVLLQRQRYKVIQLARRRAQSKRVRTAFWNTLTWSRRALASPTPVDVGRHA*
Ga0137410_103561492	3300012944	Vadose Zone Soil	MTKSIQTLTQSGMLAVLLQRQRHRVFQLARQSAHRKRVHAAFWNTLTRARLAFAAPKPVDGGHYT*
Ga0164300_100835491	3300012951	Soil	MSKSTQTLTQSGLLAVLLQRQRYKVFQLARRSAHRKRVRAAFWNTLTWSRPAFTAPKLVDGPPHT*
Ga0164299_110362021	3300012958	Soil	MRKSTQTLTQSGLLAVLLQRQRYKVFQLARRSAHRNRVRAAFWNTLTWSRPAFTAPTLVDVGRQT*
Ga0164301_108661601	3300012960	Soil	MTKSTQTLTQSGLLAVLLQRQRYKVFQLARRSAHRNRVRAAFWNTLTWSRPAFTAPTLVDVGRQT*
Ga0164308_110446342	3300012985	Soil	MSKSTQTLTQSGLLAVLLQRQRYRVLQLAQRSAHRKRVRAAFWNTLTWSRPAFTAPKLVDGPPHT*
Ga0164306_113763931	3300012988	Soil	KSTQTLTQSGLLAVLLQRQRYKVFQLARRSAHRNRVRAAFWNTLTWSRPAFTAPKLVDGPPHT*
Ga0157378_117421651	3300013297	Miscanthus Rhizosphere	MTKSTQTLTQSGMLAVLLQRQRYKVFQLARRSAHRKRVRAAFWNTLTWSRPAFTAP
Ga0163163_105651071	3300014325	Switchgrass Rhizosphere	MTKSTQTLTQSGLLAVLLQRQRYKVFQLARRSAHRKRVRAAFWNTLTWSRPVFTAPKLVGGPPHT*
Ga0137405_11063753	3300015053	Vadose Zone Soil	MTKSTQTLTQSGLLPVLLQRQRYKVIQLARRRAQSKRVRTAFWNTLTWSRRALASPTPVDVGRHT*
Ga0137403_101446712	3300015264	Vadose Zone Soil	MTKLTPTLTQSGLLAVLLERQRYKVIQLARRRAHGKHVRAAFWSTLTWPFRALTAPTLFRYDPISSSAG*
Ga0134089_104022361	3300015358	Grasslands Soil	TALWSAGKNVFRRDYVMTKSTLTLTQSGLLAVLLQRQRYKVIQLAWRRAQRKHVRAAIWSTLTWPWHALMAPTLVDVPRDT*
Ga0132256_1020715841	3300015372	Arabidopsis Rhizosphere	MTKSTQTLTQSGMLAVLLQRQRYKVFQLARRNAHRKRVRAAFWNTLTWSRPAFTAPKLVDVRRHT*
Ga0132256_1020820611	3300015372	Arabidopsis Rhizosphere	MRKSTQTLTQSGLLAVLLQRQRYRVLQLAQRSAHRKRVRAAFWNTLTWSRPAFTAPTLVDVGRQT*
Ga0132257_1004945923	3300015373	Arabidopsis Rhizosphere	MSKSTQTLTQSGLLAVLLQRQRYKVFQLARRSAHRNRVRAAFWNTLTWSRPAFTAPTLVDVGRQT*
Ga0132257_1009731502	3300015373	Arabidopsis Rhizosphere	MIKSTQTLTQSGLLAVLLQRQRYRVFQLARRSAHRKRVRAAFWNTPLTWSRPAFTAPKLVDGPPQT*
Ga0184621_102901141	3300018054	Groundwater Sediment	MTKSTQTLTQSGLLAVLLQRQRYRIIELARRRAQSKRVRTAFWNTLTWSRRALASPTPVDVGRHT
Ga0066655_100817523	3300018431	Grasslands Soil	MSKSTPTLTQSGLLAVLLQRQRYVSHLARRRADRKHQHATVWSGLTWAWRAFRSPKLLDDSGLPTVRVSRRH
Ga0066667_119191952	3300018433	Grasslands Soil	REKYVMTKSTLTLTQSGLLAVLLQHQRYRVFQLARRSAHRKRVRAAFWDTLSWPRRALTVAAAASGAPHT
Ga0190271_136285441	3300018481	Soil	MTQSTQTLTQSGMLAVLLQRQRYKAFQLARRRAHRKRMVAAFWNTLTWSRPAFTAPKLVDGPIHT
Ga0193722_10337012	3300019877	Soil	MTKSTETLTQSGLLAVLLPRQRYRVIQLARRRAQRKRVGAAFWNTLIWAQRALTAPELVDGPRRT
Ga0193713_10038226	3300019882	Soil	MTKSITQSGLLAELLEHQRRNVIELARRRAHRKQVRAVLWSILAWPWRA
Ga0193747_10001692	3300019885	Soil	MTKSITQSGLLAELLEHQRRNVIELARRRAHRKQVRAVLWSILAWPWRALKAGRRSRQVA
Ga0193727_10259763	3300019886	Soil	MTKSTQTLTQSGLLAVLLQRQRYKVIHLARRRAQSKRVRTAFWNTLTWSRRALASPTPVDVRRHT
Ga0193757_10055762	3300020008	Soil	MTKSTPTLSLTQSGLLAVLLQRQRYRVFQLARRRAHRKQMRAVLWSTLTWPFRALTARTLVDDSARPFV
Ga0193745_10175833	3300020059	Soil	MTKSVQTLTQSGLLAVLLQRQRHKVFQLARQSAHRKRVHTAFWNTLTRARLAFAAPKPIDGGALHLNRSPGSVP
Ga0210407_111314572	3300020579	Soil	MTKSTETLTQSGLLAVLLQRQRYRVIQLARRRAQRKRVGAAFWNTLIWARRALTAPELVDGPRHT
Ga0210382_102938772	3300021080	Groundwater Sediment	TLTQSGLLAVLLQRQRYAVIQLARRRAQRKHVRAAIWNILTWPWHALMAPTLVDVPRNT
Ga0210380_100774852	3300021082	Groundwater Sediment	MTQSTQTLTQSGMLAVLLQRQRSKAFQLARRRVHRERVRAAFWNTLTWSRSVFTAPKLVDGPIHT
Ga0222623_101648972	3300022694	Groundwater Sediment	MTKSTQTLTQSGLLAVLLQRQRYKVIQLARRRAQSKRVRGAFRNNLTWSRRALASPRPVDVRRHT
Ga0137417_11418232	3300024330	Vadose Zone Soil	MTKSVQTLTQSGLLAVLLQRQRHKVFQLARQSAHRKRVHAAFWNTLTRARLAFAAPKPVDGGHYT
Ga0207697_100693922	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MTSSTQTLTQSGLLAVLLQRQRYRVIQLARRRAHRERVHAAFGDIFTRARRALTAPKLVDRPRHT
Ga0207642_103407761	3300025899	Miscanthus Rhizosphere	MTKSTQTLTQSGLLAVLLQRQRYKVFQLARRSAHRKRVRAAFWNTLTWSRPAFTAPKLVDGPPHT
Ga0207680_104442372	3300025903	Switchgrass Rhizosphere	MTSSTQTLTQSGLLAVLLERQRYRAIQLARRRAHRKRVHAALEDIFTGARRALTAPKLVDRPRHT
Ga0207684_106362791	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MTKLTPTLTQSGLLAVLLQRQQYRVILLARRRAHRKQVRAAFWSILAWLLACARRHR
Ga0209802_10970233	3300026328	Soil	MRKSTPTLTQSGLLAVLLQRQRYKVFQLARRRAHRKDLRAAFWSTLTWPWRALTAPKLLDDSPEPIGG
Ga0209805_10690363	3300026542	Soil	MTELTPTLTQSGHLAVLLQWQRYKAFRRARHCAYRKHLRAAFWNTLTWPSRAFAAPTLVDDSSKPLMGTIPRHT
Ga0209474_103649633	3300026550	Soil	MTKSTLTLTQSGLLAVLLQYQRYRVFQLARRSAHRKRVRAAFWDTLSWPRRALTVAAAASGAPHT
Ga0209648_100344017	3300026551	Grasslands Soil	MTKSVQTLTQSGLLAVLLQRQRHKVFQLARQSAHRKRVHAAFWNTLTRARLAFAAPKPVDGGALHLNRSPGSVP
Ga0209388_10344203	3300027655	Vadose Zone Soil	MTKSTETLTQSGLLAVLLQRQRYRVIQLAWRRAQRKRVGAAFWNTLIWARRRLTAPELVNGPRHT
Ga0268265_119416202	3300028380	Switchgrass Rhizosphere	LLAVLLQRQRYKVFQLARRSAHRKRVRAAFWNTLTWSRPAFTAPKLVDGPPHT
Ga0137415_110318772	3300028536	Vadose Zone Soil	MTKSTETLTQSGLLAVLLQRQRYRVIQLARRRAQRKRVGAAFWNTLIWARRALTAPALVDGPRHT
Ga0307290_103198852	3300028791	Soil	MTHSTQTLTQSGLLAVLLQRQRYKVIQLARRRAQSKRVRAAFWNTLTWSQRALASPTPVDVRRHT
Ga0170824_1124988031	3300031231	Forest Soil	MSKSTPTLTQSGLLAVLLQRQRYVSYLARHRAHRKNLHTTVWSSLTWAWRAFRAPKLLDDSGLPAVRV
Ga0170820_125113611	3300031446	Forest Soil	MTKSIQTLTQSGMLAVLLQRQRHKVFQLARQSAHRKRVHAAFWNTLSRARLTFVAPMPVEAGPPRLNRSPGKVP
Ga0170820_170486791	3300031446	Forest Soil	MTKSTQTLTQSGLLAVLLQRQRYRVIQLARRRAHRKRVHAAFGDIFTGARRALTAPKLIDQPR
Ga0170819_144704941	3300031469	Forest Soil	MTKSTQTLTQSGLLAVLLQRQRYRAIQLARRRAHRKRVHAAFADIFTGARHALPAPKLVDRLRHT
Ga0306925_100348693	3300031890	Soil	MSKSTPTLTQSGLLAVLLQRQRYVSHLAQHRAHRKHLHTAVRKGLTWAWRAFRAPKLLD
Ga0307471_1038693381	3300032180	Hardwood Forest Soil	MIKSTQTLTQSGLLPVLLQRQRYKVIQLARRNGHRKRVRAAFWNTLTWLRRALTARTLAGGPRHS
Ga0307472_1006554471	3300032205	Hardwood Forest Soil	MIKSTQTLTQSGLLPVLLQRQRYKVIKLARRSAHRKRVRAAFWNTLTWLRRALTARTLAGGPRHS
Ga0310810_109671141	3300033412	Soil	MTKSTPTLTQSGLLAVLLQRQRYRVFQLARRSAHRKRVQAAFWNTLTWTRQPKLVDGPAPYLNLHQANGHVSPNP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F085503

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences