Metagenome / Metatranscriptome Family F085494

Basic Information
Family ID	F085494
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	49 residues
Representative Sequence	MSQENVEIVRRGVETWNRRDLTTWLALFSSDAEIDWSRARGPLKGVYR
Number of Associated Samples	93
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	90.99 %
% of genes near scaffold ends (potentially truncated)	97.30 %
% of genes from short scaffolds (< 2000 bps)	96.40 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Most Common Taxonomy
Group	Bacteria (81.081 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.018 % of family members)
Environment Ontology (ENVO)	Unclassified (32.432 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.649 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.63% β-sheet: 5.26% Coil/Unstructured: 67.11%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF12680	SnoaL_2	30.63
PF04828	GFA	19.82
PF03466	LysR_substrate	2.70
PF07883	Cupin_2	0.90
PF05067	Mn_catalase	0.90
PF06443	SEF14_adhesin	0.90
PF12681	Glyoxalase_2	0.90
PF14534	DUF4440	0.90
PF00296	Bac_luciferase	0.90
PF13463	HTH_27	0.90
PF01638	HxlR	0.90
PF13466	STAS_2	0.90
PF13545	HTH_Crp_2	0.90
PF01627	Hpt	0.90
PF02837	Glyco_hydro_2_N	0.90
PF14340	DUF4395	0.90
PF12802	MarR_2	0.90
PF13847	Methyltransf_31	0.90
PF00582	Usp	0.90
PF04030	ALO	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG3791	Uncharacterized conserved protein	Function unknown [S]	19.82
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.90
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.90
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.90
COG3250	Beta-galactosidase/beta-glucuronidase	Carbohydrate transport and metabolism [G]	0.90
COG3546	Mn-containing catalase (includes spore coat protein CotJC)	Inorganic ion transport and metabolism [P]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.78 %
Unclassified	root	N/A	16.22 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.08 %
Unclassified	root	N/A	16.22 %
Viruses	superkingdom	All Organisms → Viruses	2.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.08 %
Unclassified	root	N/A	16.22 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.70 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	61.26 %
Unclassified	root	N/A	16.22 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.70 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.70 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.90 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.90 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	60.36 %
Unclassified	root	N/A	16.22 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.70 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.90 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.90 %

Name	Rank	Taxonomy	Distribution
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	27.03 %
Unclassified	root	N/A	16.22 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	15.32 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	9.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.70 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.90 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.90 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Actinobacteria bacterium 13_1_20CM_3_68_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	27.03 %
Unclassified	root	N/A	16.22 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	10.81 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	6.31 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	3.60 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.70 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.90 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.90 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.90 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.90 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.90 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Actinobacteria bacterium 13_1_20CM_3_68_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	27.03 %
Unclassified	root	N/A	16.22 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.81 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	5.41 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	3.60 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.70 %
unclassified Propionibacteriales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales	0.90 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.90 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.90 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.90 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.90 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Actinobacteria bacterium 13_1_20CM_3_68_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	27.03 %
Unclassified	root	N/A	16.22 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.81 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	5.41 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	3.60 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.70 %
Propionibacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	0.90 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	0.90 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	0.90 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.90 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.90 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Actinobacteria bacterium 13_1_20CM_3_68_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	27.03 %
Unclassified	root	N/A	16.22 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.81 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	5.41 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	3.60 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.70 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	0.90 %
unclassified Arthrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter	0.90 %
Propionibacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	0.90 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.90 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.90 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Actinobacteria bacterium 13_1_20CM_3_68_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	27.03 %
Unclassified	root	N/A	16.22 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.81 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	5.41 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	3.60 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.70 %
Arthrobacter sp. TB 26	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. TB 26	0.90 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	0.90 %
Propionibacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	0.90 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.90 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.90 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2044078004\|PVR_F548DK201D7VKV	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	519	Open in IMG/M
2124908044\|A5_c1_ConsensusfromContig96741	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
2124908045\|KansclcFeb2_ConsensusfromContig580277	Not Available	670	Open in IMG/M
2170459023\|GZGNO2B01CC54P	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	527	Open in IMG/M
3300000559\|F14TC_108295452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	521	Open in IMG/M
3300000956\|JGI10216J12902_108780761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	540	Open in IMG/M
3300000956\|JGI10216J12902_114293945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1193	Open in IMG/M
3300000956\|JGI10216J12902_116423836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	860	Open in IMG/M
3300001990\|JGI24737J22298_10092330	All Organisms → cellular organisms → Bacteria → Proteobacteria	898	Open in IMG/M
3300002568\|C688J35102_120282962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	967	Open in IMG/M
3300004081\|Ga0063454_101100487	Not Available	649	Open in IMG/M
3300004153\|Ga0063455_100154088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1061	Open in IMG/M
3300004156\|Ga0062589_100391490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	1124	Open in IMG/M
3300004157\|Ga0062590_101892496	Not Available	615	Open in IMG/M
3300004479\|Ga0062595_101353240	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	645	Open in IMG/M
3300004479\|Ga0062595_101976945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	562	Open in IMG/M
3300004643\|Ga0062591_101620990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. TB 26	653	Open in IMG/M
3300004643\|Ga0062591_102163672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	578	Open in IMG/M
3300004800\|Ga0058861_11716028	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300005093\|Ga0062594_101190992	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300005093\|Ga0062594_103029821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	525	Open in IMG/M
3300005331\|Ga0070670_100607801	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300005457\|Ga0070662_101716544	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300005545\|Ga0070695_100113441	All Organisms → cellular organisms → Bacteria	1843	Open in IMG/M
3300005546\|Ga0070696_101874879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	519	Open in IMG/M
3300005549\|Ga0070704_102054026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	531	Open in IMG/M
3300005564\|Ga0070664_100279576	All Organisms → cellular organisms → Bacteria	1505	Open in IMG/M
3300005578\|Ga0068854_100257492	All Organisms → cellular organisms → Bacteria	1396	Open in IMG/M
3300005937\|Ga0081455_10847512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	571	Open in IMG/M
3300005981\|Ga0081538_10107780	All Organisms → Viruses → Predicted Viral	1378	Open in IMG/M
3300006048\|Ga0075363_100412000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	795	Open in IMG/M
3300006051\|Ga0075364_10851726	All Organisms → cellular organisms → Bacteria → Proteobacteria	621	Open in IMG/M
3300006791\|Ga0066653_10265090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	874	Open in IMG/M
3300006845\|Ga0075421_102350962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	559	Open in IMG/M
3300006852\|Ga0075433_10547935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	1017	Open in IMG/M
3300006854\|Ga0075425_100156690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2611	Open in IMG/M
3300006854\|Ga0075425_100871861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1030	Open in IMG/M
3300006854\|Ga0075425_101444540	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300006903\|Ga0075426_11072624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	610	Open in IMG/M
3300007076\|Ga0075435_101096678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	696	Open in IMG/M
3300009090\|Ga0099827_11697142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	550	Open in IMG/M
3300009098\|Ga0105245_11779063	Not Available	669	Open in IMG/M
3300009098\|Ga0105245_11924159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	645	Open in IMG/M
3300009100\|Ga0075418_13025749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	512	Open in IMG/M
3300009147\|Ga0114129_10049570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5899	Open in IMG/M
3300009147\|Ga0114129_12382656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	634	Open in IMG/M
3300009156\|Ga0111538_10275077	Not Available	2131	Open in IMG/M
3300009176\|Ga0105242_10959565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	860	Open in IMG/M
3300009177\|Ga0105248_11377284	Not Available	798	Open in IMG/M
3300009553\|Ga0105249_10574331	All Organisms → cellular organisms → Bacteria	1180	Open in IMG/M
3300009840\|Ga0126313_11615523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	540	Open in IMG/M
3300010036\|Ga0126305_10135909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1517	Open in IMG/M
3300010037\|Ga0126304_11277539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	503	Open in IMG/M
3300010038\|Ga0126315_10242663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	1097	Open in IMG/M
3300010040\|Ga0126308_10124109	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1607	Open in IMG/M
3300010040\|Ga0126308_10727670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	684	Open in IMG/M
3300010041\|Ga0126312_10677710	Not Available	744	Open in IMG/M
3300010042\|Ga0126314_10576725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	820	Open in IMG/M
3300010042\|Ga0126314_10856672	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300010371\|Ga0134125_11017112	All Organisms → cellular organisms → Bacteria	908	Open in IMG/M
3300010371\|Ga0134125_11584192	Not Available	713	Open in IMG/M
3300010399\|Ga0134127_10861233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	959	Open in IMG/M
3300010403\|Ga0134123_11640601	Not Available	692	Open in IMG/M
3300012198\|Ga0137364_10378913	All Organisms → cellular organisms → Bacteria	1057	Open in IMG/M
3300012198\|Ga0137364_10444422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	972	Open in IMG/M
3300012198\|Ga0137364_10716338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	755	Open in IMG/M
3300012198\|Ga0137364_11281188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	546	Open in IMG/M
3300012200\|Ga0137382_10386085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	985	Open in IMG/M
3300012208\|Ga0137376_10875629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	772	Open in IMG/M
3300012353\|Ga0137367_11082616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	542	Open in IMG/M
3300012902\|Ga0157291_10212294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	620	Open in IMG/M
3300012955\|Ga0164298_10831229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	664	Open in IMG/M
3300012955\|Ga0164298_11118150	Not Available	591	Open in IMG/M
3300012955\|Ga0164298_11468873	Not Available	531	Open in IMG/M
3300012960\|Ga0164301_11714807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	525	Open in IMG/M
3300012961\|Ga0164302_10171255	All Organisms → Viruses → Predicted Viral	1303	Open in IMG/M
3300012972\|Ga0134077_10558339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	514	Open in IMG/M
3300012987\|Ga0164307_10255617	All Organisms → Viruses → Predicted Viral	1225	Open in IMG/M
3300012987\|Ga0164307_11275633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	613	Open in IMG/M
3300012988\|Ga0164306_10827828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	748	Open in IMG/M
3300014325\|Ga0163163_10034703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4888	Open in IMG/M
3300014326\|Ga0157380_10156452	All Organisms → cellular organisms → Bacteria	1976	Open in IMG/M
3300014968\|Ga0157379_11723160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	614	Open in IMG/M
3300015077\|Ga0173483_10425312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	688	Open in IMG/M
3300015358\|Ga0134089_10269345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	700	Open in IMG/M
3300018081\|Ga0184625_10401749	Not Available	707	Open in IMG/M
3300018422\|Ga0190265_12351635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	634	Open in IMG/M
3300018481\|Ga0190271_10727564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1116	Open in IMG/M
3300020022\|Ga0193733_1041723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1296	Open in IMG/M
3300024288\|Ga0179589_10049343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1576	Open in IMG/M
3300025885\|Ga0207653_10347375	Not Available	579	Open in IMG/M
3300025903\|Ga0207680_10873342	Not Available	645	Open in IMG/M
3300025916\|Ga0207663_10239683	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300025925\|Ga0207650_10549598	Not Available	968	Open in IMG/M
3300025927\|Ga0207687_11584859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	562	Open in IMG/M
3300025939\|Ga0207665_10666594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	816	Open in IMG/M
3300025940\|Ga0207691_10810436	Not Available	786	Open in IMG/M
3300025961\|Ga0207712_10960222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	757	Open in IMG/M
3300026089\|Ga0207648_10691082	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	945	Open in IMG/M
3300026121\|Ga0207683_10210676	All Organisms → cellular organisms → Bacteria	1769	Open in IMG/M
3300028720\|Ga0307317_10154584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	771	Open in IMG/M
3300028784\|Ga0307282_10483156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	601	Open in IMG/M
3300028819\|Ga0307296_10443544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	710	Open in IMG/M
3300028824\|Ga0307310_10578962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	570	Open in IMG/M
3300028884\|Ga0307308_10327591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	734	Open in IMG/M
3300028889\|Ga0247827_11131434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	539	Open in IMG/M
3300031099\|Ga0308181_1093881	Not Available	639	Open in IMG/M
3300031114\|Ga0308187_10468649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	512	Open in IMG/M
3300032180\|Ga0307471_103141801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	586	Open in IMG/M
3300033004\|Ga0335084_11364297	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300033551\|Ga0247830_11371827	Not Available	565	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	66.67%
Host-Associated	Host-Associated	33.33%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.77%
Plants	Host-Associated → Plants	32.43%
Aquatic	Environmental → Aquatic	0.90%
Human	Host-Associated → Human	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.42%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.50%
Roots	Host-Associated → Plants → Roots	4.50%
Sediment	Environmental → Aquatic → Sediment	0.90%
Digestive System	Host-Associated → Human → Digestive System	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.02%
Loam	Environmental → Terrestrial → Soil → Loam	9.01%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.41%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.60%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.70%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.90%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.90%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.90%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.02%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.21%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.41%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.50%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.60%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.80%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.90%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.90%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.90%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.02%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.11%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	8.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	7.21%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.50%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.60%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.60%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.70%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.80%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.90%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.90%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.90%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.90%
Switchgrass, Maize And Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Switchgrass, Maize And Miscanthus Rhizosphere	0.90%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.90%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2044078004	Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL	Host-Associated	Open in IMG/M
2124908044	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5	Environmental	Open in IMG/M
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2170459023	Grass soil microbial communities from Rothamsted Park, UK - FA3 (control condition)	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001990	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004800	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085494

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
PVR_723810	2044078004	Switchgrass, Maize And Miscanthus Rhizosphere	MSQENVEVVRRATEAWNRRDWITLSALWRSDGVLDWSRARGPFKGVYRGEGER
A5_c1_01340970	2124908044	Soil	MSKENVEVVQRGIETWNRRDLTTWLALFSSDAEIDWTH
KansclcFeb2_03105150	2124908045	Soil	MSEENVEAVRRHTEAWNRRDLTTWLALSSSDAEIDWSRSRGPLKGVYRGHGELEAFWDAF
FA3_08988160	2170459023	Grass Soil	MSGENVEIVRRHVEAWNRRDLKTWLATFRSDAEIDWS
F14TC_1082954521	3300000559	Soil	MSQENAEVARRHQEAWNRRDLRTWLDLYRSDAEIDWSRAR
JGI10216J12902_1087807611	3300000956	Soil	MSQENVEIVRRHTEAFNRRDLRTWLALFRSDAEIDWSRA
JGI10216J12902_1142939454	3300000956	Soil	MSQENVETVRRHNEAWNRRDLTTWLASFSSGGEIDWSRSR
JGI10216J12902_1164238361	3300000956	Soil	MSQENVEVVRRHTEAFNRRDLRTWLALFRSDAEIDWSRA
JGI24737J22298_100923302	3300001990	Corn Rhizosphere	MSEENVETVRRQNEAFNRRDLKAWVASYHRDAEIDWSRAEGPVNGVYRGH
C688J35102_1202829623	3300002568	Soil	MSRENVEVVRRNQEAWNRRDLRTWLASFRCDAEIDWSRARGPFKGVY
Ga0063454_1011004872	3300004081	Soil	MSQENVEVVRSHLEAWNRRDKAAYVASFRSDAEIDWSRARALYSGVYRGR
Ga0063455_1001540881	3300004153	Soil	MSQENVEIVRRGVETWNRRDLTTWLALFSSDAEIDWSRARGPLKGVYR
Ga0062589_1003914902	3300004156	Soil	MSHENVEVAQRNQDAWNRRDLTTWLATFRSDAEIDWSRARGLFRGVYRGPQEHRV
Ga0062590_1018924961	3300004157	Soil	MSQENVEVVLRGIDAYNRRDWITESAVWRSDGVIDWSRAQGPLK
Ga0062595_1013532401	3300004479	Soil	MSQENVEIIRRHVKAWNRRDLGAWLALFASEAEIDWSRSRGPLKGVYRGH
Ga0062595_1019769451	3300004479	Soil	MSQENVELVRRGVETWNRRDLTTWLALFSSDAEIDWSRARGPL
Ga0062591_1016209901	3300004643	Soil	MSQENVEVVRRGIEAFNRRDLKTWLTTFRSDAEIDWSRARGPLKGVYRGHGELE
Ga0062591_1021636721	3300004643	Soil	MSQENVEVVRRAVEAWNRRDRRAWLALFRSDAELDWSRARGPLK
Ga0058861_117160281	3300004800	Host-Associated	MSEENVETVRRQNEAFNRRDLKAWVASYHRDAEIDWSRAEGPVNGVYRGHRELE
Ga0062594_1011909921	3300005093	Soil	VAMSEENVETVRRQNEAFNRRDLKAWVASYHRDAEIDWSRA
Ga0062594_1030298211	3300005093	Soil	MSQENVEVVRRHAQAWNRRDMAALSALWRSDAEIDWSRARGPLKGVYRGRGERETFWNEFYS
Ga0070670_1006078011	3300005331	Switchgrass Rhizosphere	MSEENVETVRRQNEAFNRRDLKAWVASYHRDAEIDWSRAEGPVNGVYRGHRELEGFCDAF
Ga0070662_1017165442	3300005457	Corn Rhizosphere	MSEENVETVRRQNEAFNRRDLKAWVASYHRDAEIDWSRAEGPVNGVYRGHCELEG
Ga0070695_1001134411	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	VAMSEENVETVRRQNEAFNRRDLKAWLASYHRDAEIDWSRA
Ga0070696_1018748791	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MSEENVEVVRRHFDAWNRGDLTGWLDTFRSDAEIDWSRSRG
Ga0070704_1020540262	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MSQENVEIVRRMNEAWNGRDHGAWLAAYSPEAEIDWSRSRGPLKGVYRG
Ga0070664_1002795763	3300005564	Corn Rhizosphere	MSEENVETVRRQNEAFNRRDLKAWVASYHRDAEIDWSRAEGPVNGVYRGHR
Ga0068854_1002574921	3300005578	Corn Rhizosphere	VAMSEENVETVRRQNEAFNRRDLKAWVASYHRDAEIDWSR
Ga0081455_108475122	3300005937	Tabebuia Heterophylla Rhizosphere	MSQKNVEVVWRGIQAFNGRDLTRALSVWSADAEIDWSRSEGPFKGVYRGHAEL
Ga0081538_101077804	3300005981	Tabebuia Heterophylla Rhizosphere	MSQENVELVRGGIDAVNRRDLTKLSAMWRSDGEIDWSQARGPLKGVYRGQR
Ga0075363_1004120002	3300006048	Populus Endosphere	MSQENVDVVRRMFEAFNRRDRITLEALWRSDAVIDWSRARGTAEGCLSR*
Ga0075364_108517262	3300006051	Populus Endosphere	MSQENVDVVRRHIEAWNRGDLTAFLATFRSDAEIDWSRA
Ga0066653_102650902	3300006791	Soil	MESGKLPRDTARTMSEENVEVVRKSIEAGNRRDLATERALWRSDAEVDWSRSRGPLKGVYRGREEV
Ga0075421_1023509621	3300006845	Populus Rhizosphere	IEAFNRRDLRTWLATYSSDAEIDWSRARGPFKGVYCGRSGQEAFWEVSDI*
Ga0075433_105479351	3300006852	Populus Rhizosphere	MSQENVEIVRRHIEAFNRRDLSTWVALFSSDAEIDWSRARGPFKGFY
Ga0075425_1001566906	3300006854	Populus Rhizosphere	MSQENVELVRRGVETWNRRDLTTWLALFSSDAEIDW
Ga0075425_1008718611	3300006854	Populus Rhizosphere	MSQENVEVVRRANEAWNRRDWITLSALWRSDGVLDWSRARGPFKGVY
Ga0075425_1014445401	3300006854	Populus Rhizosphere	MSQENVEVVRRNIEAFNRRDLRTWLATYSSDAEIDWSRARGPFKGVY
Ga0075426_110726242	3300006903	Populus Rhizosphere	MSQENVEVVRRGIEAFNRRDVKTWLTTFRSDAEIDWSRARGPLKGVYRGHGELE
Ga0075435_1010966783	3300007076	Populus Rhizosphere	MSVGNVETVRRHNDAWNRRDLATWLASFRSGGEIDWSRSRGPLKGVIAVIES
Ga0099827_116971421	3300009090	Vadose Zone Soil	MSEENVEIVRRGIETWNRRDLTAWLASFDSDAEIDWSRARGPLKG
Ga0105245_117790632	3300009098	Miscanthus Rhizosphere	MSQENLEIVRRNIEAFNGRDLRAWLATFRSDGEMDWSRA
Ga0105245_119241592	3300009098	Miscanthus Rhizosphere	MSQENVEVVRRSIAAWNRRDLRTWLASFSSDAEIDWSRARGPLKGVYRGPGEIETLWKEFFF
Ga0075418_130257492	3300009100	Populus Rhizosphere	MSEENVEVVQRGIETWNRRDLATWLASFSSDAEIDWTHARGPL
Ga0114129_100495708	3300009147	Populus Rhizosphere	MSEENVEIVQRGIETWNRRDLTTWLALFSSDAEIDWSRARGPLKGVY
Ga0114129_123826561	3300009147	Populus Rhizosphere	MSQENVEVVQRHVEAWNRRDMATLSTLWRSDAEIDW
Ga0111538_102750776	3300009156	Populus Rhizosphere	MSQENVEIVRRHHEARNRRDLITLLALWHSDAEIDWSRSRGPL
Ga0105242_109595651	3300009176	Miscanthus Rhizosphere	MSQENVEVVRRHAQAWNRRDMAALSALWRSDAEIDWSRARGPLKG
Ga0105248_113772841	3300009177	Switchgrass Rhizosphere	MSEENVETVRRQNEAFNRRDLKAWVASYHRDAEIDWSRAEGPVNGVYRG
Ga0105249_105743314	3300009553	Switchgrass Rhizosphere	MSEENVETVRRYNDAWNRRDLTAWLAVLSSGAEVDWSRSRGPLKGVYRGPGELEVFWD
Ga0126313_116155231	3300009840	Serpentine Soil	MSQENVEIVQRHIEAFNRRDLRTWLATFHPDAEIDWSRARGPFKGVY
Ga0126305_101359091	3300010036	Serpentine Soil	MSQENVEIVRRHIEAWNRRDLTAWLDLFHSDAEIDWSRARGLFKGVYRGRGGHEAFW
Ga0126304_112775392	3300010037	Serpentine Soil	MSEENVEMVRLGLEAWNRRDLTTWLSSFHPDGEIDWSRSRGPLMGVYRGHDGLR
Ga0126315_102426631	3300010038	Serpentine Soil	MSREKVEVVRRSIAAWNRRDLTAWMAGFHPDAEIDWSRSRGPLKGVYRDEGLRASGLTLV
Ga0126308_101241091	3300010040	Serpentine Soil	MSQENVEIVRRHIEAWNRRDLTAWLDLFHSDAEIDWSRARGL
Ga0126308_107276702	3300010040	Serpentine Soil	MSQENIEIVRRHIEAWNRRDLPTLLALWRSDAEIDWSRARGPLKGV*
Ga0126312_106777101	3300010041	Serpentine Soil	MSEENVEAVRRHREAWNRQELTAWLASFHPDGELDWSRSRGPLKGV
Ga0126314_105767253	3300010042	Serpentine Soil	MPGENVAAVRRHNEAWNRGDLTAWLASFSSDPEIDWSRARGLLKGVYRGRSELEAFWEAF
Ga0126314_108566721	3300010042	Serpentine Soil	MSQEDVEVVRRSIEAWNRRDMAAFLVEFHREAELDWSRSRAPFKGVYR
Ga0134125_110171123	3300010371	Terrestrial Soil	MSEENVETVRRYNDAWNRRDLTAWLALLSSGAEVDWSRSRGPLKGVYRGPGE
Ga0134125_115841922	3300010371	Terrestrial Soil	MSEENVETVRRQNEAFNRRDLKAWVASYHRDAEIDWSRAEGPVNGVYRGHRQLEGFCDAFWS
Ga0134127_108612332	3300010399	Terrestrial Soil	MSQENVEVVQRGIETWNRRDLTTWLALFSSDAEIDWS
Ga0134123_116406012	3300010403	Terrestrial Soil	MSEENVETVRRYNDAWNRRDLTAWLAVLSSGAEVDWSRSRGPLKGVYRGPGEL
Ga0137364_103789132	3300012198	Vadose Zone Soil	MSQENVETVRRHNDAWNRRDLTAWLATFHSNSEIDWSRSRGPLKGVYRGHG
Ga0137364_104444222	3300012198	Vadose Zone Soil	MSEENVEVVRRHNDAWNRRDLTAWLATFHSNSEIDWSRSRGPLKGVYRGHG
Ga0137364_107163381	3300012198	Vadose Zone Soil	MSQENVEIVRRWIDAWNRRDLTTWLASFSNGGEIDWSRSRGPLKGVYSG
Ga0137364_112811881	3300012198	Vadose Zone Soil	MSQENVEIVRRHIDAWNRRDLKVWLDCFHPEAELDWSRSRGPLR
Ga0137382_103860853	3300012200	Vadose Zone Soil	MSQENVEIVRRHIDAWNRRDWKAWLDSFAPEAELDWSRSRGPLKGLYH
Ga0137376_108756291	3300012208	Vadose Zone Soil	MSQETIEFVRSNIEAWNRRDLTTWLDTFRSDAEIDWSRARGPLKGVYRGHDELKAFW
Ga0137367_110826161	3300012353	Vadose Zone Soil	MSEENVEVVRRHNEAWNQRDLSSVLVLWRSDAEIDWSRSR
Ga0157291_102122941	3300012902	Soil	MSRENVDVVRRGIEAFNRRDLKTWLTTFRSDAEIDWSRARGPLKGVYRGHGELE
Ga0164298_108312291	3300012955	Soil	MSQENVETVRRGIEAWNRRDLTTWLAGFGPNAEIDWSRS
Ga0164298_111181501	3300012955	Soil	MSQENVDVVLRMFEAFNQRDRITLEALWRSDAVIDWSRARG
Ga0164298_114688732	3300012955	Soil	MSEENVETVRRQNEAFNRRDLKAWVASYHRDAEIDWSRAEGPV
Ga0164301_117148071	3300012960	Soil	MSQENVEIVRRMNEAWNGRDHGAWLAAYSPEAEIDWSR
Ga0164302_101712551	3300012961	Soil	MSQENVEVVRRSIAAWNRRDLRTWLASFSSDAEIDWSRARGPLKGVYRGPGE
Ga0134077_105583391	3300012972	Grasslands Soil	MSQENIDVVRRNQEAWNRRDLRAWLASFRSDAEIDWSRARRPLKG
Ga0164307_102556171	3300012987	Soil	MSQENIEIVQRHVEAWNRRDLKAWLDMFHSGAEIDWSRSRAPHK
Ga0164307_112756331	3300012987	Soil	MSQENVEVVRRSIAAWNRRDLRTWLASFSSDAEIDWSRARGPLKG
Ga0164306_108278282	3300012988	Soil	MSQENVEIVRRAIDALNRRDLDEFLQCLNPEAELDWSRSLGVEAGVY
Ga0163163_100347031	3300014325	Switchgrass Rhizosphere	MSEENVETVRRQNEAFNRRDLKAWVASYHRDAEIDWSRAEGPVNGVYRGHREL
Ga0157380_101564521	3300014326	Switchgrass Rhizosphere	MLEENVETVRQQNDAFNRRDLKAWVASYHRAAEIDWSRAEGPVNGVYRGHRELEGF
Ga0157379_117231602	3300014968	Switchgrass Rhizosphere	MSQENIEIVQRHVEAWNRRDLKAWLDMFHSGAEIDWSRSRAPHKGVYRGRREHEAFWGVF
Ga0173483_104253122	3300015077	Soil	MSQENVEIVRRGVETWNRRDLATWLALFSADAEIDWSRAR
Ga0134089_102693452	3300015358	Grasslands Soil	MSQENVEVVLRQHEAWNRRDLRTWLASFRSDAEIDWSRARGPFKGVYRGYDGFETFWEVF
Ga0184625_104017491	3300018081	Groundwater Sediment	MSEENFETVRRYNDAWNRRDLTAWLALLSSGAEVDWSRSQGPLKGV
Ga0190265_123516351	3300018422	Soil	MSQENVEIVRAHFDARNRRDLTTLLTLWRSDGEIDWSRSRGPLRGVYRG
Ga0190271_107275641	3300018481	Soil	MSEENVEIVRRSIEIWNRRDLTAELTFWSSDAETDWSRATGPFKGIYRGHHELEAFWNE
Ga0193733_10417231	3300020022	Soil	MSEENVATVRRHTEAWNRRDLATWLASFASDGEIDWSRSRGPLNGVYRDEGELEV
Ga0179589_100493432	3300024288	Vadose Zone Soil	MSEENVEAVQRNIEAWNRRDLTAWLASFHPDAEID
Ga0207653_103473751	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MSEENVEVVRSHLEAWNRRDKAAYVASFRSDAEIDWSRARAPYRGLYRGREQQKAF
Ga0207680_108733421	3300025903	Switchgrass Rhizosphere	MSEENVETVRRQNEAFNRRDLKAWVASYHRDAEIDWSRAEGPVNGVYRGHRQLEGFC
Ga0207663_102396831	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MSEENVETVRRQNEAFNRRDLKAWVASYHRDAEIDWSRAEGPVNGVYRGHRELEGFCDAFWSTFDD
Ga0207650_105495982	3300025925	Switchgrass Rhizosphere	MSEENVETVRRQNEAFNRRDLKAWVASYHRDAEIDWSRAEGPVNGVYRGHRQLEGF
Ga0207687_115848592	3300025927	Miscanthus Rhizosphere	VVRRHAQAWNRRDMAALSALWRSDAEIDWSRARGPLKGVYRGRGERETFWNEFYSTFE
Ga0207665_106665941	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MSEENVEVVRSHLEAWNRRDKAAYVASFRSDAEIDWSRARAPYRGLYRGREQ
Ga0207691_108104361	3300025940	Miscanthus Rhizosphere	MSEENVETVRRQNEAFNRRDLKAWVASYHRDAEIDWSRAEGPVNGVYRGHCELEGFC
Ga0207712_109602222	3300025961	Switchgrass Rhizosphere	MSQENVEVVQRHVEAWNRRDMATLSTLWRSDAEIDWSRARGPMKGVYRGRGERETFWN
Ga0207648_106910821	3300026089	Miscanthus Rhizosphere	MSQENVEIVLRSIEVWNRRDLRAWLAMFSSDAEIDWSRSRAPHKGVYRGQG
Ga0207683_102106761	3300026121	Miscanthus Rhizosphere	MSEENVETVRRQNEAFNRRDLKAWVASYHRDAEIDWSRAEGPVNGVYRGHRELEGFCD
Ga0307317_101545841	3300028720	Soil	MSEENVEVVRRNQDAWNRCDLRTWLASFRSDGEIDWSRSRGPLKGFYRGTGE
Ga0307282_104831562	3300028784	Soil	MEVVRRNIEAFNRRDLRTWLATYRSDGEIDWSRARGPDKGVYRGHGELETFWDAWLT
Ga0307296_104435442	3300028819	Soil	MSQENVEVVRRNIEAFNRRDLRTWLATFRSDAEIDWSRARGPQKGVYRGRAGHEAFWEVW
Ga0307310_105789621	3300028824	Soil	MSQENVEVVRRHAEAWNRRDLRTWLASFRSDAEIDWSRARGPFKGVYRGPGEHEAF
Ga0307308_103275911	3300028884	Soil	MEVVRRNIEAFNRRDLRTWLATFRSDAEIDWSRAR
Ga0247827_111314342	3300028889	Soil	MSQENVEIVKAVLDAWKRRDLTTMLALWRADGEIDWSRSRGPLKRVYRG
Ga0308181_10938811	3300031099	Soil	MSEENVETVRRHTESWNRRDLTTWLDSFSSGGEIDWSRSRGPLKGVYRGHGELE
Ga0308187_104686491	3300031114	Soil	MSQENVEVVKRHVEAWNRRDLGAYLASFASDAEVDWSRSRAPHKG
Ga0307471_1031418011	3300032180	Hardwood Forest Soil	MSEENVETVRRWTEEWNRREQTAWLASLHQDAEIDWSRA
Ga0335084_113642971	3300033004	Soil	MSQENVEVVREAIDAWNRRDSQAWVEVFNPEAELDWSRSRG
Ga0247830_113718272	3300033551	Soil	MSQEAVEIARRQNDAWNRRDLGAWLASYGPEAEMDWSRSRGPLK

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign