Metagenome / Metatranscriptome Family F085434

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085434
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	45 residues
Representative Sequence	MSEHRPVHEEPRVEEHKVYALLAIPVFLVTIFIIGLIATLGTSPRP
Number of Associated Samples	92
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.78 %
% of genes near scaffold ends (potentially truncated)	24.32 %
% of genes from short scaffolds (< 2000 bps)	80.18 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.495 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (17.117 % of family members)
Environment Ontology (ENVO)	Unclassified (25.225 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.144 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.54% β-sheet: 0.00% Coil/Unstructured: 59.46%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF00881	Nitroreductase	7.21
PF00196	GerE	3.60
PF04545	Sigma70_r4	3.60
PF08241	Methyltransf_11	1.80
PF02390	Methyltransf_4	1.80
PF12681	Glyoxalase_2	1.80
PF12847	Methyltransf_18	0.90
PF02771	Acyl-CoA_dh_N	0.90
PF01575	MaoC_dehydratas	0.90
PF03328	HpcH_HpaI	0.90
PF01557	FAA_hydrolase	0.90
PF13565	HTH_32	0.90
PF10819	DUF2564	0.90
PF05016	ParE_toxin	0.90
PF13649	Methyltransf_25	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0030	16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)	Translation, ribosomal structure and biogenesis [J]	1.80
COG0220	tRNA G46 N7-methylase TrmB	Translation, ribosomal structure and biogenesis [J]	1.80
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	1.80
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	1.80
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	0.90
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.90
COG2301	Citrate lyase beta subunit	Carbohydrate transport and metabolism [G]	0.90
COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	Carbohydrate transport and metabolism [G]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.50 %
Unclassified	root	N/A	4.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.50 %
Unclassified	root	N/A	4.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.50 %
Unclassified	root	N/A	4.50 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	76.58 %
Unclassified	root	N/A	4.50 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.90 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	75.68 %
Unclassified	root	N/A	4.50 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.90 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.90 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	69.37 %
Unclassified	root	N/A	4.50 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.90 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	69.37 %
Unclassified	root	N/A	4.50 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.90 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c2036165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	593	Open in IMG/M
3300000956\|JGI10216J12902_111492777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	980	Open in IMG/M
3300004114\|Ga0062593_100010091	All Organisms → cellular organisms → Bacteria	4355	Open in IMG/M
3300004156\|Ga0062589_101571736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	650	Open in IMG/M
3300004157\|Ga0062590_101179957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	745	Open in IMG/M
3300004463\|Ga0063356_100315647	All Organisms → cellular organisms → Bacteria	1949	Open in IMG/M
3300004463\|Ga0063356_102209439	Not Available	838	Open in IMG/M
3300004479\|Ga0062595_100161393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1323	Open in IMG/M
3300004643\|Ga0062591_100243053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1366	Open in IMG/M
3300004643\|Ga0062591_100644993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	946	Open in IMG/M
3300005093\|Ga0062594_100377355	All Organisms → cellular organisms → Bacteria	1131	Open in IMG/M
3300005180\|Ga0066685_10426012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	921	Open in IMG/M
3300005181\|Ga0066678_10417276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	891	Open in IMG/M
3300005289\|Ga0065704_10572955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	622	Open in IMG/M
3300005344\|Ga0070661_101196385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	635	Open in IMG/M
3300005406\|Ga0070703_10003944	All Organisms → cellular organisms → Bacteria	4202	Open in IMG/M
3300005440\|Ga0070705_100323755	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1114	Open in IMG/M
3300005444\|Ga0070694_100549274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	925	Open in IMG/M
3300005444\|Ga0070694_101785600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	524	Open in IMG/M
3300005450\|Ga0066682_10068585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2184	Open in IMG/M
3300005467\|Ga0070706_100109600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2569	Open in IMG/M
3300005468\|Ga0070707_101425566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	659	Open in IMG/M
3300005518\|Ga0070699_100072593	All Organisms → cellular organisms → Bacteria	2994	Open in IMG/M
3300005536\|Ga0070697_100120649	All Organisms → cellular organisms → Bacteria	2193	Open in IMG/M
3300005552\|Ga0066701_10321149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	960	Open in IMG/M
3300005552\|Ga0066701_10785743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	568	Open in IMG/M
3300005559\|Ga0066700_10900548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	588	Open in IMG/M
3300005561\|Ga0066699_11210151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	518	Open in IMG/M
3300005568\|Ga0066703_10778402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	548	Open in IMG/M
3300005617\|Ga0068859_100613306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1181	Open in IMG/M
3300006034\|Ga0066656_10012682	All Organisms → cellular organisms → Bacteria	4311	Open in IMG/M
3300006049\|Ga0075417_10002858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	5329	Open in IMG/M
3300006049\|Ga0075417_10219596	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300006049\|Ga0075417_10642250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	542	Open in IMG/M
3300006796\|Ga0066665_10723309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	788	Open in IMG/M
3300006847\|Ga0075431_100941472	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300006876\|Ga0079217_10298258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	891	Open in IMG/M
3300006894\|Ga0079215_10763073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	667	Open in IMG/M
3300006918\|Ga0079216_10989158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	648	Open in IMG/M
3300007004\|Ga0079218_10068528	All Organisms → cellular organisms → Bacteria	2296	Open in IMG/M
3300009012\|Ga0066710_102122598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	824	Open in IMG/M
3300009089\|Ga0099828_10869197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	806	Open in IMG/M
3300009090\|Ga0099827_11969518	Not Available	508	Open in IMG/M
3300009137\|Ga0066709_100033120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	5525	Open in IMG/M
3300009147\|Ga0114129_10041677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	6467	Open in IMG/M
3300010333\|Ga0134080_10190758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	884	Open in IMG/M
3300010400\|Ga0134122_10097986	All Organisms → cellular organisms → Bacteria	2317	Open in IMG/M
3300010400\|Ga0134122_12448497	Not Available	570	Open in IMG/M
3300012174\|Ga0137338_1150035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	509	Open in IMG/M
3300012203\|Ga0137399_11773597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	506	Open in IMG/M
3300012204\|Ga0137374_10184350	All Organisms → cellular organisms → Bacteria	1818	Open in IMG/M
3300012204\|Ga0137374_10436329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1032	Open in IMG/M
3300012204\|Ga0137374_10803764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	697	Open in IMG/M
3300012205\|Ga0137362_10850575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	780	Open in IMG/M
3300012355\|Ga0137369_10163035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1757	Open in IMG/M
3300012355\|Ga0137369_10170796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1708	Open in IMG/M
3300012355\|Ga0137369_10947409	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300012358\|Ga0137368_10336407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1008	Open in IMG/M
3300012359\|Ga0137385_10375418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1215	Open in IMG/M
3300012685\|Ga0137397_11328820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	509	Open in IMG/M
3300012922\|Ga0137394_10034387	All Organisms → cellular organisms → Bacteria	4134	Open in IMG/M
3300012922\|Ga0137394_10124797	All Organisms → cellular organisms → Bacteria	2181	Open in IMG/M
3300012927\|Ga0137416_11487493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	615	Open in IMG/M
3300015371\|Ga0132258_10473684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3126	Open in IMG/M
3300015374\|Ga0132255_100623835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1596	Open in IMG/M
3300017654\|Ga0134069_1204379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	675	Open in IMG/M
3300017656\|Ga0134112_10381440	Not Available	579	Open in IMG/M
3300017997\|Ga0184610_1188293	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300018028\|Ga0184608_10180331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	920	Open in IMG/M
3300018071\|Ga0184618_10169384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	901	Open in IMG/M
3300018078\|Ga0184612_10389705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	701	Open in IMG/M
3300018082\|Ga0184639_10208008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1037	Open in IMG/M
3300018429\|Ga0190272_12630155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	551	Open in IMG/M
3300018431\|Ga0066655_10056809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2041	Open in IMG/M
3300018482\|Ga0066669_10102807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1989	Open in IMG/M
3300019259\|Ga0184646_1403666	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300021972\|Ga0193737_1027312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	811	Open in IMG/M
3300022534\|Ga0224452_1206573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	603	Open in IMG/M
3300022756\|Ga0222622_10656020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	760	Open in IMG/M
3300022756\|Ga0222622_11126774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	577	Open in IMG/M
3300022756\|Ga0222622_11384839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	518	Open in IMG/M
3300025167\|Ga0209642_10374810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	800	Open in IMG/M
3300025885\|Ga0207653_10002099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6352	Open in IMG/M
3300025908\|Ga0207643_10339300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	941	Open in IMG/M
3300025910\|Ga0207684_10000249	All Organisms → cellular organisms → Bacteria	80711	Open in IMG/M
3300025922\|Ga0207646_11252083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	649	Open in IMG/M
3300025922\|Ga0207646_11270545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	644	Open in IMG/M
3300025938\|Ga0207704_11449248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	589	Open in IMG/M
3300026285\|Ga0209438_1025703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1963	Open in IMG/M
3300026314\|Ga0209268_1146903	Not Available	579	Open in IMG/M
3300026323\|Ga0209472_1118011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1043	Open in IMG/M
3300026324\|Ga0209470_1008136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	6481	Open in IMG/M
3300027633\|Ga0208988_1085867	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	787	Open in IMG/M
3300027637\|Ga0209818_1094292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	785	Open in IMG/M
3300027639\|Ga0209387_1039970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	996	Open in IMG/M
3300027645\|Ga0209117_1120205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	704	Open in IMG/M
3300027678\|Ga0209011_1162964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	622	Open in IMG/M
3300027681\|Ga0208991_1047065	All Organisms → cellular organisms → Bacteria	1303	Open in IMG/M
3300027873\|Ga0209814_10027462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2333	Open in IMG/M
3300027873\|Ga0209814_10063253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1551	Open in IMG/M
3300027873\|Ga0209814_10276131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	730	Open in IMG/M
3300027875\|Ga0209283_10037817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3033	Open in IMG/M
3300028536\|Ga0137415_11407148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	519	Open in IMG/M
3300028536\|Ga0137415_11419975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	516	Open in IMG/M
3300028784\|Ga0307282_10463142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	615	Open in IMG/M
3300028814\|Ga0307302_10266004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	841	Open in IMG/M
3300028881\|Ga0307277_10089936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1293	Open in IMG/M
3300028884\|Ga0307308_10137202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1170	Open in IMG/M
3300031965\|Ga0326597_10011262	All Organisms → cellular organisms → Bacteria	11865	Open in IMG/M
3300031965\|Ga0326597_11307210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	709	Open in IMG/M
3300032180\|Ga0307471_104090699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	515	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.68%
Host-Associated	Host-Associated	15.32%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.77%
Plants	Host-Associated → Plants	15.32%
Aquatic	Environmental → Aquatic	9.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.77%
Sediment	Environmental → Aquatic → Sediment	9.01%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.11%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.21%
Freshwater	Environmental → Aquatic → Freshwater	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.46%
Loam	Environmental → Terrestrial → Soil → Loam	15.32%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.21%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.70%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	18.02%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	11.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.70%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.90%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	13.51%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.21%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	6.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.41%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.50%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.60%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.70%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.80%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.80%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.90%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012174	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT366_2	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021972	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2m2	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025167	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2 (SPAdes)	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027637	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)	Environmental	Open in IMG/M
3300027639	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_20361652	3300000033	Soil	MSEHRPVXEEPRVEEHKVXALLAXPVFLVTLFIIGLIATLGTSPRP*
JGI10216J12902_1114927773	3300000956	Soil	MTEHRPVHEEPRLEDHKVYALLAIPVFLVTIFIIGLIAIF
Ga0062593_1000100911	3300004114	Soil	MSEHRPVHEEPRVEEHKVYALLAIPVFLVTLFIIGLIATLGTVPRP*
Ga0062589_1015717361	3300004156	Soil	MSEHRPVHEEPRVEEHKVYALLAIPVFLVTLFIIGLIATLGTAPRP*
Ga0062590_1011799571	3300004157	Soil	MSEHRPVHEEPRVEEHKVYALLAIPVFLVTLFIIGLIATLGT
Ga0063356_1003156474	3300004463	Arabidopsis Thaliana Rhizosphere	MSEHRPVHEEPRLEDHKVYALLAIPVFLVTIFIIGLIAVLGTAPRP*
Ga0063356_1022094391	3300004463	Arabidopsis Thaliana Rhizosphere	MSEHRPVHEEPRLEDHKVYALLAIPVFLVTIFIIGLIAVFGTSPRP*
Ga0062595_1001613934	3300004479	Soil	MSEHRPVHEEPRVEEHKVYALLAIPVFLVTLFIIGLIATLGTSPRP*
Ga0062591_1002430533	3300004643	Soil	MSEQRPVHEEPRVEEHKVYALLAIPVFLVTIFIIGLIATLGTAPRP*
Ga0062591_1006449932	3300004643	Soil	MSEHRPVHEEPRVEEHKVYALLAIPVFLVTIFIIGLIATLGTSPRP*
Ga0062594_1003773552	3300005093	Soil	MSEHRPVHEESRVEEHKVYALLAIPVFLVTIFIIGLIATLGTSPRP*
Ga0066685_104260121	3300005180	Soil	VSEHRPVREERRLEEHKVYALLAIPIFLVTIFIIGLLTLFGTSPRP*
Ga0066678_104172761	3300005181	Soil	MAEHGPVHEESRLEEHKVYALLAIPIFIVTIFIIGLLTLFGTSPRP*
Ga0065704_105729552	3300005289	Switchgrass Rhizosphere	MSEHRPVHEEPRVEEHKVYALLAIPVFLVTIFIIGLIATLGTAPRP*
Ga0070661_1011963852	3300005344	Corn Rhizosphere	MSEHRPVQEEPRVEEHKVYALLAIPVFLVTLFIIGLIATLGTAPRP*
Ga0070703_100039448	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MSEHRPVHEEPRVEEHKVYALLAIPVFLVTLFIIGLIATL
Ga0070705_1003237552	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MSEHRPVHEEPRVEEHKVYALLAIPIFIVTIFIIGLLTLFGTSPRP*
Ga0070694_1005492741	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MSKHRPVHEEPRVEEHKVYALLAIPVFLVTLFIIGLIATLGTSPRP*
Ga0070694_1017856001	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MAEHGPVREESRLEEHKVYALLAIPIFIVTVFIIGLLTLFGTSPRP*
Ga0066682_100685851	3300005450	Soil	MAEHRPVHEESRLEEHKVYALLAIPIFIVTIFIIGLLTLFGTSPRP*
Ga0070706_1001096002	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MAEHGPVHEESRLEEHKVYALLAIPIFIVTIFIIGLLTMFGTSPRP*
Ga0070707_1014255662	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MSEHPPVHEEPRLEDHKVYALLAIPVFLVTIFIIALIAMLGTSPRP*
Ga0070699_1000725936	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MSKHRPVHEEPRVEEHKVYALLAIPVFLVTLFIIGLIATLGTSP
Ga0070697_1001206493	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	TAVDGGRMSEHRPVHEEPRVEEHKVYALLAIPVFLVTLFIIGLIATLGTAPRP*
Ga0066701_103211492	3300005552	Soil	RLEEHKVYALLAIPIFIVTIFIIGLLTLFGTSPRP*
Ga0066701_107857432	3300005552	Soil	LEEHKVYALLAIPIFLVTIFIIGLLTLFGTSPRP*
Ga0066700_109005482	3300005559	Soil	MSEQRPAREESRLEEHKVYALLAIPIFLVTIFIIGLLTLFGTSPRP*
Ga0066699_112101511	3300005561	Soil	MSDHPPVHEESRLEEHKVYALLAIPIFLVTIFIIGLLTLFGTSPRP*
Ga0066703_107784022	3300005568	Soil	MSEHPPVHEESRLEEHKVYVLLAIPIFLVTIFIIGLLTLFGTSPRP*
Ga0068859_1006133064	3300005617	Switchgrass Rhizosphere	MSEHRPVHEEPRVEEHKVYALLAIPVFLVTLFIIGLIATLGTSPR
Ga0066656_100126823	3300006034	Soil	VSEHRPVREERRLEEHKVYAPLAIPIFLVTIFIIGLLTLFGTSPRP*
Ga0075417_100028585	3300006049	Populus Rhizosphere	MSEHRPVREEPRLEDHKVYALLAIPVFLVTIFIIVLIAALGTSPRP*
Ga0075417_102195962	3300006049	Populus Rhizosphere	MSEHRSVHEEPRIEEHKVYALLAIPIFIVTIFIVALLATLGTSPRP*
Ga0075417_106422501	3300006049	Populus Rhizosphere	MSEHRPVHEEPRIEEHKVYALLAIPIFVVTVFIIALIAIFGTAPRP*
Ga0066665_107233091	3300006796	Soil	VTLSEHRPAREESRLEEHKVYALLAIPIFLVTIFIIGLLTLFGTSPRP*
Ga0075431_1009414722	3300006847	Populus Rhizosphere	LSEHRPVNEKPRVEEHLVYALLAIPIFLVTIFIVALLATLGTAPRP*
Ga0079217_102982582	3300006876	Agricultural Soil	MSERRPVHEEPRLEDHKVYALLAIPVFLVTILIIVLLAIFGTSPGP*
Ga0079215_107630732	3300006894	Agricultural Soil	MSEHRPVHEEPRLEDHKVYALLAIPVFLVTIFIVVLLAIFGTSPRP*
Ga0079216_109891582	3300006918	Agricultural Soil	MSEHRPVREEPRVEDHKVYALLAIPVFLVTIFIVVLLAVLGTSPQP*
Ga0079218_100685283	3300007004	Agricultural Soil	VHEEPRLEDHKVYLLLALPVFLVTIFIIVLLAIFGTAPGP*
Ga0066710_1021225982	3300009012	Grasslands Soil	MSEQRPAREESRLEEHKVYALLAIPIFLVTIFIIGLLTLFGTSPRP
Ga0099828_108691972	3300009089	Vadose Zone Soil	MAEHGPVREESRLEEHKVYALLAIPIFIVTIFIIGLLTLFGTSPRP*
Ga0099827_119695181	3300009090	Vadose Zone Soil	MSEHRPVHEESRLEEHKVYALLAIPIFLVTIFIIGLLATFGTSPRP*
Ga0066709_1000331203	3300009137	Grasslands Soil	LSEHRPAREESRLEEHKVYALLAIPIFLVTIFIIGLLTLFGTSPRP*
Ga0114129_100416772	3300009147	Populus Rhizosphere	MSEHRPVHEEPRIEEHKVYALLAIPIFLVTVFIIVLIAIFGTAPRP*
Ga0134080_101907581	3300010333	Grasslands Soil	MSEHRPVHEESRLEEHRVYALLAIPIFLVTIFIIGLLTMFGTSPRP*
Ga0134122_100979865	3300010400	Terrestrial Soil	MSEHEPVHEEPRVEEHKVYALLAIPVFLVTIFIIGLIATLGTSPRP*
Ga0134122_124484971	3300010400	Terrestrial Soil	EPRVEEHKVYALLAIPVFLVTLFIIGLIATLGTSPRP*
Ga0137338_11500351	3300012174	Soil	MSEHRPVHEEPRLEEHKVYALLAIPVFLVTILIIALIAIFGTSPRP*
Ga0137399_117735971	3300012203	Vadose Zone Soil	MSEHPPVHEEPRVEEHKVYALLAIPVFLVTIFIIGLIATLGSAPRP*
Ga0137374_101843505	3300012204	Vadose Zone Soil	MSDHRPVREEPRVEEHRVYALLAIPVFLVTILIVVLIATLGTAPRP*
Ga0137374_104363291	3300012204	Vadose Zone Soil	MSEHRPVREEPRIEEHKVYALLAIPVFLVTLLIIGLIATLGTAPRP*
Ga0137374_108037641	3300012204	Vadose Zone Soil	SNRSVGGQMSEQRPVHEEPREEEHKVYVLLAIPVFLVTIFIIGLIAMLGTSPRP*
Ga0137362_108505751	3300012205	Vadose Zone Soil	MSEHRPVHEESRLEEHKVYALLAIPIFLVTIFIIGLLTLFGTSPRP*
Ga0137369_101630355	3300012355	Vadose Zone Soil	MSDHRPVREEPRVEEHRVYALLAIPVFLVTILIVVLIATLGAAPRP*
Ga0137369_101707961	3300012355	Vadose Zone Soil	VHEEPREEEHKVYVLLAIPVFLVTIFIIGLIAMLGTSPRP*
Ga0137369_109474092	3300012355	Vadose Zone Soil	MSEQRPVHEEPREEEHKVYVLLAIPVFLVTIFIIGLIAMLGTSPRP*
Ga0137368_103364071	3300012358	Vadose Zone Soil	MSERRPVREEPRLEEHKLYALLALPVFLVTSFIIALIAMLGTSPRP*
Ga0137385_103754183	3300012359	Vadose Zone Soil	MSEHRPAREESRLEEHKVYVLLAIPIFLVTIFIIGLIATFGTSPRP*
Ga0137397_113288202	3300012685	Vadose Zone Soil	MSENRPVREEPRLEDHKVYALLAIPVFLVTLFIIGLIATLGTSPRP*
Ga0137394_100343871	3300012922	Vadose Zone Soil	MSDHRPVHEEPRIEEHKVYALLAIPVFLVTIFIIGLIATLGTSPRP*
Ga0137394_101247971	3300012922	Vadose Zone Soil	MSDHRPVHEEPRIEEHKVYALLAIPVFLVTIFIIGLIATLGSAPRP*
Ga0137416_114874932	3300012927	Vadose Zone Soil	EHPPVREEPRVEEHKVYALLAIPVFIVTLFIIGLIATLGTSPRP*
Ga0132258_104736845	3300015371	Arabidopsis Rhizosphere	MSEHRPVPEEPRLEEHKVYALLAIPVFLVTLLIIGLIATLGTSPRP*
Ga0132255_1006238354	3300015374	Arabidopsis Rhizosphere	MSERRPVPEEPRLEEHKVYALLAIPVFLVTLLIIGLIATLG
Ga0134069_12043791	3300017654	Grasslands Soil	MSEHRPVHEESRLEEHKVYALLAIPIFLVTIFIIGLLTLFGTSPRP
Ga0134112_103814401	3300017656	Grasslands Soil	MSEHRPVHEESRLEEHKVYALLAIPIFLVTIFIIGLLTMFGTSPRP
Ga0184610_11882931	3300017997	Groundwater Sediment	MSEHRPVHEEPRLEDHKVYALLAIPVFLVTIFIIGLIAIFGTSPRP
Ga0184608_101803313	3300018028	Groundwater Sediment	MSEHRPVHEEPRVEEHKVYALLAIPVFLVTLFIIGLIATLGTSPRP
Ga0184618_101693842	3300018071	Groundwater Sediment	MSEHRPVHEEPRVEEHKVYALLAIPVFLVTIFIIGLIATLGTSPRP
Ga0184612_103897051	3300018078	Groundwater Sediment	MSEHRPVHEEARLEDHKVYALLAIPVFLVTIFIVVLLATLGTSPRP
Ga0184639_102080083	3300018082	Groundwater Sediment	MSEHRPVHEEARLEDHKVYALLAIPIFLVTIFIVALLATLGTSPRP
Ga0190272_126301551	3300018429	Soil	MSEQRPVHEEPRLEDHKVYALLAIPVFLVTIFIIGLIAMFGTSPRP
Ga0066655_100568093	3300018431	Grasslands Soil	MAEHRPVHEESRLEEHKVYALLAIPIFIVTIFIIGLLTLFGTSPRP
Ga0066669_101028073	3300018482	Grasslands Soil	MAAHRPVHEESRLEEHKVYALLAIPIFIVTIFIIGLLTLFGTSPRP
Ga0184646_14036662	3300019259	Groundwater Sediment	GGPMSEHRPVHEEQRLEDHKVYALLAIPVFLVTIFIIGLIAIFGTSPRP
Ga0193737_10273121	3300021972	Soil	MSEQRPVHEESRLEDHKVYALLAIPVFLVTIFIVVLLATLGTSPRP
Ga0224452_12065731	3300022534	Groundwater Sediment	MSEHRPVHEEPRLEDHKVYALLAIPVFLVTIFIVVLLATLGTSPRP
Ga0222622_106560201	3300022756	Groundwater Sediment	VHEEPRVEEHKVYALLAIPVFLVTLFIIGLIATLGTSPRP
Ga0222622_111267741	3300022756	Groundwater Sediment	HEEPRVEEHKVYALLAIPVFLVTLFIIGLIATLGTSPRP
Ga0222622_113848391	3300022756	Groundwater Sediment	MSEHRPVHEEPRVEEHKVYALLAIPVFLVTLFIIGLIA
Ga0209642_103748103	3300025167	Soil	MSEHRPVHEEPRVEDHKVYALLAIPVFLVTIFIVVLLAVLGTSPRP
Ga0207653_100020996	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MSEHRPVHEEPRVEEHKVYALLAIPVFLVTLFIIGLIATLGTAPRP
Ga0207643_103393001	3300025908	Miscanthus Rhizosphere	MSEHRPVHEESRVEEHKVYALLAIPVFLVTIFIIGLIATLGTSPRP
Ga0207684_1000024976	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MAEHGPVHEESRLEEHKVYALLAIPIFIVTIFIIGLLTMFGTSPRP
Ga0207646_112520832	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MSKHRPVHEEPRVEEHKVYALLAIPVFLVTLFIIGLIATLGTVPRP
Ga0207646_112705452	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MSEHPPVHEEPRLEDHKVYALLAIPVFLVTIFIIALIAMLGTSPRP
Ga0207704_114492482	3300025938	Miscanthus Rhizosphere	MSEHRPVHEEPRVEEHKVYALLAIPVFLVTIFIIGLIATLGTAPRP
Ga0209438_10257035	3300026285	Grasslands Soil	MSEHRPLHEEPRVEEHKVYALLAIPVFLVTIFIIGLIATLGTSPRP
Ga0209268_11469032	3300026314	Soil	VHEESRLEEHKVYALLAIPIFIVTIFIIGLLTLFGTSPRP
Ga0209472_11180112	3300026323	Soil	MAEHGPVHEESRLEEHKVYALLAIPIFIVTIFIIGLLTLFGTSPRP
Ga0209470_10081365	3300026324	Soil	VSEHRPVREERRLEEHKVYALLAIPIFLVTIFIIGLLTLFGTSPRP
Ga0208988_10858671	3300027633	Forest Soil	MSEHPPVHEEPRVEEHKVYALLAIPVFIVTLFIIGLIATLGTSPRP
Ga0209818_10942922	3300027637	Agricultural Soil	MSERRPVHEEPRLEDHKVYALLAIPVFLVTILIIVLLAIFGTSPGP
Ga0209387_10399704	3300027639	Agricultural Soil	MSEHRPVHEEPRLEDHKVYLLLALPVFLVTIFIIVLLAIFGTSPGP
Ga0209117_11202052	3300027645	Forest Soil	MSEHRPVHEEPRIEEHKVYALLAVPVFIVTLFIIGLIATLGSSPRP
Ga0209011_11629641	3300027678	Forest Soil	MSEHPPVHEEPRIEEHKVYALLAIPVFIVTLFIIGLIAT
Ga0208991_10470653	3300027681	Forest Soil	MSEHPPVHEEPRIEEHKVYALLAIPVFIVTLFIIGLIATLGTSPRP
Ga0209814_100274625	3300027873	Populus Rhizosphere	MSEHRPVREEPRLEDHKVYALLAIPVFLVTIFIIVLIAALGTSPRP
Ga0209814_100632534	3300027873	Populus Rhizosphere	MSEHRSVHEEPRIEEHKVYALLAIPVFLVTLFIIGLIATLGTAPRP
Ga0209814_102761312	3300027873	Populus Rhizosphere	MSEHRPVHEEPRIEEHKVYALLAIPIFVVTVFIIALIAIFGTAPRP
Ga0209283_100378175	3300027875	Vadose Zone Soil	MAEHGPVREESRLEEHKVYALLAIPIFIVTIFIIGLLTLFGTSPRP
Ga0137415_114071482	3300028536	Vadose Zone Soil	MSEHPPVHEESRLEEHKVYALLAIPIFLVTIFIIGLLTLFGTSPRP
Ga0137415_114199752	3300028536	Vadose Zone Soil	EHPPVREEPRVEEHKVYALLAIPVFIVTLFIIGLIATLGTSPRP
Ga0307282_104631421	3300028784	Soil	PVHEEPRVEEHKVYALLAIPVFLVTIFIIGLIATLGTSPRP
Ga0307302_102660041	3300028814	Soil	GGRMSEHRPVHEEPRVEEHKVYALLAIPVFLVTLFIIGLIATLGTSPRP
Ga0307277_100899362	3300028881	Soil	MSEHGPVREEPRLEDHKVYALLAIPVFLVTLFIIGLIATLGTSPRP
Ga0307308_101372022	3300028884	Soil	LVLDSPDGGRMSEHRPVHEEPRVEEHKVYALLAIPVFLVTIFIIGLIATLGTSPRP
Ga0326597_100112629	3300031965	Soil	LSEHRPVNEKPRVEEHLVYALLAIPIFLVTIFIVVLLAVLGTSPRP
Ga0326597_113072101	3300031965	Soil	EHRPVNEKPRVEEHKVYALLAIPIFLVTIFIVVLLAVLGTSPRP
Ga0307471_1040906992	3300032180	Hardwood Forest Soil	MSEHRPVHEEARIEEHKVYALLAIPVFLVTIFIIGLIATLGTAPRP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085434

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences