NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F085421

Metagenome / Metatranscriptome Family F085421

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F085421
Family Type Metagenome / Metatranscriptome
Number of Sequences 111
Average Sequence Length 53 residues
Representative Sequence MARTFGDRDARVTLAHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDGKKD
Number of Associated Samples 64
Number of Associated Scaffolds 111

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 4.50 %
% of genes near scaffold ends (potentially truncated) 33.33 %
% of genes from short scaffolds (< 2000 bps) 95.50 %
Associated GOLD sequencing projects 61
AlphaFold2 3D model prediction Yes
3D model pTM-score0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (59.459 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil
(29.730 % of family members)
Environment Ontology (ENVO) Unclassified
(54.955 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(64.865 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 45.68%    β-sheet: 0.00%    Coil/Unstructured: 54.32%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.40
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 111 Family Scaffolds
PF13508Acetyltransf_7 2.70
PF03401TctC 1.80
PF04986Y2_Tnp 1.80
PF01315Ald_Xan_dh_C 1.80
PF07885Ion_trans_2 1.80
PF02738MoCoBD_1 0.90
PF00834Ribul_P_3_epim 0.90
PF13185GAF_2 0.90
PF12802MarR_2 0.90
PF00583Acetyltransf_1 0.90
PF03592Terminase_2 0.90
PF13560HTH_31 0.90
PF13384HTH_23 0.90
PF04392ABC_sub_bind 0.90
PF08734GYD 0.90
PF03775MinC_C 0.90
PF00239Resolvase 0.90

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 111 Family Scaffolds
COG3181Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctCEnergy production and conversion [C] 1.80
COG0036Pentose-5-phosphate-3-epimeraseCarbohydrate transport and metabolism [G] 0.90
COG0850Septum site-determining protein MinCCell cycle control, cell division, chromosome partitioning [D] 0.90
COG1961Site-specific DNA recombinase SpoIVCA/DNA invertase PinEReplication, recombination and repair [L] 0.90
COG2452Predicted site-specific integrase-resolvaseMobilome: prophages, transposons [X] 0.90
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 0.90
COG3728Phage terminase, small subunitMobilome: prophages, transposons [X] 0.90
COG4274Uncharacterized conserved protein, contains GYD domainFunction unknown [S] 0.90


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A59.46 %
All OrganismsrootAll Organisms40.54 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000655|AF_2010_repII_A100DRAFT_1088402Not Available544Open in IMG/M
3300000956|JGI10216J12902_113147894Not Available775Open in IMG/M
3300002906|JGI25614J43888_10185175Not Available563Open in IMG/M
3300004268|Ga0066398_10093876Not Available686Open in IMG/M
3300005332|Ga0066388_100106432All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3286Open in IMG/M
3300005332|Ga0066388_100810665All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1527Open in IMG/M
3300005332|Ga0066388_101310573All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH101249Open in IMG/M
3300005332|Ga0066388_101568764All Organisms → cellular organisms → Bacteria → Proteobacteria1156Open in IMG/M
3300005332|Ga0066388_102634536Not Available916Open in IMG/M
3300005332|Ga0066388_103030673Not Available858Open in IMG/M
3300005332|Ga0066388_103284055All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium826Open in IMG/M
3300005332|Ga0066388_104874267Not Available682Open in IMG/M
3300005332|Ga0066388_106949961Not Available569Open in IMG/M
3300005332|Ga0066388_106997976Not Available567Open in IMG/M
3300005332|Ga0066388_107073199Not Available564Open in IMG/M
3300005332|Ga0066388_107601486Not Available543Open in IMG/M
3300005363|Ga0008090_15782671All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria692Open in IMG/M
3300005467|Ga0070706_100238132All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1699Open in IMG/M
3300005467|Ga0070706_101171714Not Available706Open in IMG/M
3300005471|Ga0070698_101279038All Organisms → cellular organisms → Bacteria683Open in IMG/M
3300005518|Ga0070699_100712291All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria917Open in IMG/M
3300005713|Ga0066905_100555858Not Available964Open in IMG/M
3300005713|Ga0066905_101702085Not Available579Open in IMG/M
3300005764|Ga0066903_100469588All Organisms → cellular organisms → Bacteria2114Open in IMG/M
3300005764|Ga0066903_100776105Not Available1708Open in IMG/M
3300005764|Ga0066903_100865204All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1629Open in IMG/M
3300005764|Ga0066903_101210169Not Available1403Open in IMG/M
3300005764|Ga0066903_101652156All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1217Open in IMG/M
3300005764|Ga0066903_101980109Not Available1118Open in IMG/M
3300005764|Ga0066903_102437066All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1012Open in IMG/M
3300005764|Ga0066903_102922870Not Available926Open in IMG/M
3300005764|Ga0066903_104960037Not Available706Open in IMG/M
3300005764|Ga0066903_105273731Not Available683Open in IMG/M
3300005764|Ga0066903_105346074Not Available678Open in IMG/M
3300005764|Ga0066903_105785608Not Available649Open in IMG/M
3300005764|Ga0066903_106395400All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium614Open in IMG/M
3300005764|Ga0066903_108023126All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium541Open in IMG/M
3300005764|Ga0066903_108205815Not Available534Open in IMG/M
3300005764|Ga0066903_108720597Not Available515Open in IMG/M
3300005764|Ga0066903_108884220Not Available510Open in IMG/M
3300006797|Ga0066659_10477325Not Available996Open in IMG/M
3300009088|Ga0099830_11551012Not Available552Open in IMG/M
3300009792|Ga0126374_10386989Not Available972Open in IMG/M
3300010043|Ga0126380_10498673Not Available934Open in IMG/M
3300010043|Ga0126380_11433401Not Available608Open in IMG/M
3300010043|Ga0126380_12268444Not Available503Open in IMG/M
3300010046|Ga0126384_10132812All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1892Open in IMG/M
3300010358|Ga0126370_10883949Not Available805Open in IMG/M
3300010358|Ga0126370_10894074Not Available801Open in IMG/M
3300010359|Ga0126376_10790567Not Available925Open in IMG/M
3300010359|Ga0126376_10989991Not Available840Open in IMG/M
3300010359|Ga0126376_11797624All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria650Open in IMG/M
3300010359|Ga0126376_12075904All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium611Open in IMG/M
3300010359|Ga0126376_12654479Not Available550Open in IMG/M
3300010360|Ga0126372_10676109Not Available1004Open in IMG/M
3300010360|Ga0126372_11687305Not Available674Open in IMG/M
3300010361|Ga0126378_10266648All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1810Open in IMG/M
3300010361|Ga0126378_12536008Not Available586Open in IMG/M
3300010362|Ga0126377_13254313Not Available525Open in IMG/M
3300010362|Ga0126377_13594764Not Available501Open in IMG/M
3300010366|Ga0126379_10220096All Organisms → cellular organisms → Bacteria → Proteobacteria1843Open in IMG/M
3300010366|Ga0126379_10435530All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1368Open in IMG/M
3300010366|Ga0126379_12173620Not Available656Open in IMG/M
3300010366|Ga0126379_12812869Not Available582Open in IMG/M
3300010398|Ga0126383_12092522All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300010863|Ga0124850_1080390All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria971Open in IMG/M
3300012189|Ga0137388_11890613Not Available527Open in IMG/M
3300012210|Ga0137378_11074716Not Available719Open in IMG/M
3300012361|Ga0137360_10375742Not Available1194Open in IMG/M
3300012362|Ga0137361_11609055Not Available570Open in IMG/M
3300012923|Ga0137359_11605596Not Available538Open in IMG/M
3300012971|Ga0126369_10346405All Organisms → cellular organisms → Bacteria1506Open in IMG/M
3300016294|Ga0182041_11014530Not Available751Open in IMG/M
3300016319|Ga0182033_11395145Not Available631Open in IMG/M
3300016404|Ga0182037_10732341All Organisms → cellular organisms → Bacteria848Open in IMG/M
3300016445|Ga0182038_11137978Not Available694Open in IMG/M
3300021560|Ga0126371_10712482All Organisms → cellular organisms → Bacteria1151Open in IMG/M
3300021560|Ga0126371_11215145All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium890Open in IMG/M
3300026319|Ga0209647_1078024All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1647Open in IMG/M
3300031543|Ga0318516_10144864All Organisms → cellular organisms → Bacteria1363Open in IMG/M
3300031543|Ga0318516_10415409Not Available774Open in IMG/M
3300031544|Ga0318534_10458245Not Available730Open in IMG/M
3300031544|Ga0318534_10818290Not Available523Open in IMG/M
3300031545|Ga0318541_10796982Not Available527Open in IMG/M
3300031561|Ga0318528_10331148Not Available817Open in IMG/M
3300031573|Ga0310915_10003795All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium8216Open in IMG/M
3300031573|Ga0310915_10047868All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2749Open in IMG/M
3300031640|Ga0318555_10255082All Organisms → cellular organisms → Bacteria948Open in IMG/M
3300031668|Ga0318542_10437694Not Available677Open in IMG/M
3300031680|Ga0318574_10751491Not Available571Open in IMG/M
3300031681|Ga0318572_10218541All Organisms → cellular organisms → Bacteria1116Open in IMG/M
3300031723|Ga0318493_10811284All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium527Open in IMG/M
3300031736|Ga0318501_10089438All Organisms → cellular organisms → Bacteria1519Open in IMG/M
3300031744|Ga0306918_10249427All Organisms → cellular organisms → Bacteria1354Open in IMG/M
3300031751|Ga0318494_10543510Not Available678Open in IMG/M
3300031763|Ga0318537_10040997All Organisms → cellular organisms → Bacteria → Proteobacteria1666Open in IMG/M
3300031771|Ga0318546_10487615Not Available864Open in IMG/M
3300031781|Ga0318547_10994027Not Available524Open in IMG/M
3300031792|Ga0318529_10293171Not Available757Open in IMG/M
3300031796|Ga0318576_10097049All Organisms → cellular organisms → Bacteria1341Open in IMG/M
3300031805|Ga0318497_10665004Not Available584Open in IMG/M
3300031805|Ga0318497_10750450All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium547Open in IMG/M
3300031819|Ga0318568_10788097All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300031832|Ga0318499_10367510Not Available552Open in IMG/M
3300031845|Ga0318511_10053349All Organisms → cellular organisms → Bacteria → Proteobacteria1627Open in IMG/M
3300031879|Ga0306919_10504745Not Available932Open in IMG/M
3300031890|Ga0306925_11873200All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium571Open in IMG/M
3300031947|Ga0310909_10109003All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2235Open in IMG/M
3300031959|Ga0318530_10349354Not Available612Open in IMG/M
3300032043|Ga0318556_10311130All Organisms → cellular organisms → Bacteria823Open in IMG/M
3300032091|Ga0318577_10151811All Organisms → cellular organisms → Bacteria1102Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil29.73%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil26.13%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil23.42%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil6.31%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.41%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.60%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.80%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.80%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.90%
Tropical Rainforest SoilEnvironmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil0.90%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000655Forest soil microbial communities from Amazon forest - 2010 replicate II A100EnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300002906Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cmEnvironmentalOpen in IMG/M
3300004268Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBioEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005363Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010863Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)EnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300026319Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031640Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031723Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031763Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031792Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031805Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031832Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25EnvironmentalOpen in IMG/M
3300031845Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031959Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24EnvironmentalOpen in IMG/M
3300032043Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AF_2010_repII_A100DRAFT_108840223300000655Forest SoilLEMAQTFRDRQARGALSYMAQVWLRLADNYQDAKKVRPAMQQQQQIQPKDDSKKS*
JGI10216J12902_11314789413300000956SoilMARTFGDHGARATLSHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDGKKD*
JGI25614J43888_1018517513300002906Grasslands SoilMARTFGDNGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0066398_1009387623300004268Tropical Forest SoilMAHTFRDRQARGALSYMAQVWLRLADNYQDAKKVRPAMQQQQQIQPKDDSKKF*
Ga0066388_10010643233300005332Tropical Forest SoilMAQTFRDRDARGSLCYMAEVWLRLADNAKKVRPAMQQQQQIQPKDGSKKD*
Ga0066388_10081066533300005332Tropical Forest SoilMARTFGDRDARGMLSHMAQVWLRLADNCRDAKKARPAMQQQQQIQSKDDSKKD*
Ga0066388_10131057333300005332Tropical Forest SoilMAHTFGDRNARASLCYMAEVWLRLADNCQDAKKVRPAMQRQQQIQPKDNSRRD*
Ga0066388_10156876423300005332Tropical Forest SoilMARTFGDRDARVTLAHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDNGKKD*
Ga0066388_10263453633300005332Tropical Forest SoilMAQTFGDRDARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPKDDGKKD*
Ga0066388_10303067313300005332Tropical Forest SoilMARTFGDRGARVVLSHMAQAWLRLADNCQDAKNVRPAMQQQQQIQPKDDSKKD*
Ga0066388_10328405533300005332Tropical Forest SoilMAAAFRDPEARSSLSYMAEVWLRLADNCQVRPAMQQQQQIQPKDDG
Ga0066388_10487426723300005332Tropical Forest SoilRRAQQCLEMAGTFRDREARATLSHMAQAWLRAADNCQDAKKVRPAMQQQQQIQPKDDGRKD*
Ga0066388_10694996123300005332Tropical Forest SoilMARAFGDRDARVTLAHMAQAWLRLADNYQGARKVQLAVQQQHQIQAKDDDRE*
Ga0066388_10699797613300005332Tropical Forest SoilMARTFGDHGARVTLAHMAQAWLRVADNCQDAKKVPPAMQQQQQIQPKDDSKKD*
Ga0066388_10707319923300005332Tropical Forest SoilMAAAFRDPEARSSLSYMAEVWLRLADNCQVRPAMQQQQQIQPKDDGKKD*
Ga0066388_10760148613300005332Tropical Forest SoilMARTFGDHGARATLSHMAQAWLRVADNCQDAKKVRPAMQQQQQIQ
Ga0008090_1578267113300005363Tropical Rainforest SoilMARAFGDRDARVTLAHMAQAWLRWAHNSQDAKKVRPAVQQQQQIQPKDGDRE*
Ga0070706_10023813223300005467Corn, Switchgrass And Miscanthus RhizosphereMARTFGDNGARATLAHMAQAWLRVADNCQDAKGAAVQQQQQIQPNDDKE*
Ga0070706_10117171413300005467Corn, Switchgrass And Miscanthus RhizosphereMAGTFREREARVSLSYMAEVWLRLADNSQDAKGAAVQQQRQIQPNDDQE*
Ga0070698_10127903823300005471Corn, Switchgrass And Miscanthus RhizosphereVLRDGAHVWRPRRAGHLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0070699_10071229113300005518Corn, Switchgrass And Miscanthus RhizosphereMVGTFRDGDARAALSHMAQVWLRLADKEVQPAVQQQQQIQPKKE*
Ga0066905_10055585823300005713Tropical Forest SoilMARTFGDNGARVTLAHMAQAWLRVADNCQDAKKVRAAIRQQQQIQPKDDSKKD*
Ga0066905_10170208513300005713Tropical Forest SoilMAHTFRDRQASGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0066903_10046958823300005764Tropical Forest SoilMARAFGDRDARVTLAHMAQTWLRLADNFQDAKKVRPAVQQQQQMQPKDGERE*
Ga0066903_10077610533300005764Tropical Forest SoilMAAAFRDREARISPSYMAQVWLRLADNCQGVKEIRPAMQQQPQIQPSDNGKKD*
Ga0066903_10086520433300005764Tropical Forest SoilMARTFGDRDARGSLCYMAEVWLRLADNYQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0066903_10121016923300005764Tropical Forest SoilMARTFGDHGARVTLAHMAQAWLRVADNCPDAKKVRPAMQQQQQIQPKDNGKKD*
Ga0066903_10165215633300005764Tropical Forest SoilMAQTFGDRNGRGSLCYMAEVWLRLADNYQDAKKVRPVMQQQQQIQPKDDGKKD*
Ga0066903_10198010923300005764Tropical Forest SoilMAQTFADRDARGSLCYMAEVWPKLADRYQDADEVRPAMQQQQQIQPKDDGKKD*
Ga0066903_10243706613300005764Tropical Forest SoilMARTFGDHGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDD
Ga0066903_10292287013300005764Tropical Forest SoilMARTFGDRDARVVLSHMAQAWLRLADNCKDAKKVRPAMQQQQQIQPKDDDRQ*
Ga0066903_10496003713300005764Tropical Forest SoilMARTFGDHGVRVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQRIQPKDDSKKD*
Ga0066903_10527373113300005764Tropical Forest SoilMARTFGDQGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKK
Ga0066903_10534607423300005764Tropical Forest SoilMAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPNDDGKKD*
Ga0066903_10578560813300005764Tropical Forest SoilMAQAFGDRNGRGSLCYMADVWLKLADRYQDAKTVRPTMQQQQQIQPKDDSKKD*
Ga0066903_10639540013300005764Tropical Forest SoilMAQTFGDRDVRGSLCYMAEVWLKLADRYQDADEVRPAMQRQQQIQPKDDSKKD*
Ga0066903_10802312613300005764Tropical Forest SoilMARTFGDRDSRVTLAHMAQVWLRLADNYQDAKKVRPAMQQQQQIQPKDNSRKD*
Ga0066903_10820581513300005764Tropical Forest SoilMARTFGDRNARVILSHMAQAWLRLADNCQDARKVRPAMRQQQQIQPKDDDKKK*
Ga0066903_10872059713300005764Tropical Forest SoilMAHTFGDRDARGSLCYMAEVWLRVADNCQDAKKVRPAMQQQQQIQPKDDNKKD*
Ga0066903_10888422013300005764Tropical Forest SoilMARAFGNRDARVTLAHMAQAWLRLADKCQDAKKVRPAMQQQQQIQPK
Ga0066659_1047732513300006797SoilMARTFGDHGARATLSHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDSAKKD*
Ga0099830_1155101213300009088Vadose Zone SoilMARTFGDHGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0126374_1038698923300009792Tropical Forest SoilMARTFGDRDARVILSHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPRDDGKKD*
Ga0126380_1049867313300010043Tropical Forest SoilRRRAQQCLEMARTFGDQRAQVTLAHMAQAWLRVANNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0126380_1143340113300010043Tropical Forest SoilMARTFGDHGARATLSHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0126380_1226844413300010043Tropical Forest SoilMARTFGDHGGRVTLADMAQAWLRVADNCKDAKKVRPAMQQQEQIQPKDDSKKN*
Ga0126384_1013281223300010046Tropical Forest SoilMARTFGDHGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDGKKD*
Ga0126370_1088394923300010358Tropical Forest SoilLSNALKFGHNGARVTLAHMAQAWLRLADNCQDAKKVRPAMQPQRQIQPKDDSKKD*
Ga0126370_1089407413300010358Tropical Forest SoilMARTFGDQGARVTLAHMAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0126376_1079056713300010359Tropical Forest SoilMARTFGDHGARATLSHMAQAWLRAADNCQDAKKVRPAMQQQQQIQPKDDGNKD*
Ga0126376_1098999113300010359Tropical Forest SoilMARAFGDRDARITLAHMAQAWLRLADNYQGARKVQPAVQQQQQIQPKDDDGG*
Ga0126376_1179762413300010359Tropical Forest SoilRAHQCLEMARTFGDRGARGSLCYMAEVWLRLADNCQDARKSRPAMQQQQQIQPKDDGKKD
Ga0126376_1207590413300010359Tropical Forest SoilDRDARVILSHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPRDDGKKD*
Ga0126376_1265447923300010359Tropical Forest SoilMAQTFGDRDARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPK
Ga0126372_1067610913300010360Tropical Forest SoilMARTFGDHGARATLSHMAQAWLRAADNCQDAKKVRPAMQQQQQIQPKDNGKKD*
Ga0126372_1168730513300010360Tropical Forest SoilMAQTFADRDARGSLCYMAEVWPKLADRYQDADEVRPAMQQQQQIQPKDDSKKD*
Ga0126378_1026664843300010361Tropical Forest SoilMAHTFGDRDARGSLCYMVEVWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0126378_1253600813300010361Tropical Forest SoilMARAFGDRDARITLAHMAQAWLRLADNYQGARKVQPAVQQQQQIQPKDDD
Ga0126377_1325431323300010362Tropical Forest SoilFGDHGGRVTLADMAQAWLRVADNCKDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0126377_1359476413300010362Tropical Forest SoilRTFGDRDARGMLSHMAQVWLRLADNCRDAKKARPAMQQQQQIQPKDDGKKD*
Ga0126379_1022009633300010366Tropical Forest SoilMARAFGDRDPRVTLAHMAQAWLRWAHNCQDAKKVRPAVQQQQQIQPKDGDRE*
Ga0126379_1043553023300010366Tropical Forest SoilMARTFGDQGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0126379_1217362013300010366Tropical Forest SoilMARTFGDQGARVTLAHMAQVWLRVADNYRDAKKVRPAMQQQQQIQPKDNSRKD*
Ga0126379_1281286923300010366Tropical Forest SoilMARAFGDPDARVTLAHMAQAWLRLADKCQDAKKVRPAMQQQQQIQAKDGDRE*
Ga0126383_1209252213300010398Tropical Forest SoilTFGDHGARVTLAHMAQAWLRVADNCQDAKKVRLAMQQQQQIQPKDDSKKD*
Ga0124850_108039013300010863Tropical Forest SoilLSNALKFGHNGARVTQAWLRLADNCQDAKKVRPAMQPQRQIQPKDDSKKD*
Ga0137388_1189061313300012189Vadose Zone SoilRAQQCLEMARTFGDNGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0137378_1107471613300012210Vadose Zone SoilMARTFGDNGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDGKKD*
Ga0137360_1037574223300012361Vadose Zone SoilMARAFGDRDARITLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0137361_1160905513300012362Vadose Zone SoilNGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0137359_1160559613300012923Vadose Zone SoilMARTFGDHGARATLSHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKD
Ga0126369_1034640523300012971Tropical Forest SoilMARAFGDRDARVTLAHMAQAWLRWAHNCQDAKKVRPAVQQQQQIQPKDGDRE*
Ga0182041_1101453013300016294SoilMARAFGDRDARVTLAHMAQAWLRLADNCQDAKKVRPAMQQQQQMQPKDGDGE
Ga0182033_1139514513300016319SoilMAHTFKDRDARGSLCYMAEVWLRLADNCQDAKKVRPAMQQQQQIQPKDDGKKD
Ga0182037_1073234123300016404SoilMAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPKD
Ga0182038_1113797813300016445SoilFFHCRSQRVGPTRTFRDRQARCALSYMAQLWLRLADNCQAAKKVRPAMQQQQQIQPKDDGKKD
Ga0126371_1071248233300021560Tropical Forest SoilMARTFGDHGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0126371_1121514513300021560Tropical Forest SoilMARTFGDQGARVTLAHMAQAWLRVADNYQDAKKVRPAMQQQQQIQPKDDGKE
Ga0209647_107802433300026319Grasslands SoilMARTFGDNGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0318516_1014486413300031543SoilMAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPKDDGKKD
Ga0318516_1041540923300031543SoilGFKMFSDGHLEMARTFGDRDARVVLSHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0318534_1045824523300031544SoilMARRFGDRDARVTLAHMAQDWLRLADNCQDAKKVRPAMQQQQQIQPRDDGKKG
Ga0318534_1081829013300031544SoilMARTFGDQGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKN
Ga0318541_1079698213300031545SoilMARTFGDQGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKND
Ga0318528_1033114813300031561SoilMARTFGDRDARVVLSHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0310915_1000379553300031573SoilMAQTFGDRDVRRSLCYMAEVWLKLADRYQHADEVRPAMQQQQQIQPKDDD
Ga0310915_1004786833300031573SoilMARTFGDRDARVTLAHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDGKKD
Ga0318555_1025508213300031640SoilMAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQRIQPKDDGKKD
Ga0318542_1043769413300031668SoilMARTFGDQGARVTLAHMAQVWLRVADNYRDAKKVRPAIQQQQQI
Ga0318574_1075149113300031680SoilMAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPKDDGKK
Ga0318572_1021854123300031681SoilMARTFGDHGARMTLAHMAQAWLRVADDCQDAKKVRPVMQQQQQIQPKDDSKKD
Ga0318493_1081128413300031723SoilAQQCLEMAQTFGDRDVRRSLCYMAEVWLKLADRYQHADEVRPAMQQQQQIQPKDDD
Ga0318501_1008943813300031736SoilMAHTFRDRQARGALSYMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDGKKD
Ga0306918_1024942723300031744SoilMVRTFGDHGARMTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0318494_1054351023300031751SoilMARTFGDRDARVILSHMAQAWLRLADNCQRAQEVRPAMQQQQQIQPKDDSKND
Ga0318537_1004099723300031763SoilMARTFGDRDARVVLSHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKD
Ga0318546_1048761513300031771SoilQCLEMARTFGDQGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKND
Ga0318547_1099402713300031781SoilCLEMARTFGDQGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKND
Ga0318529_1029317113300031792SoilMFSDGHLEMARTFGDRDARVVLSHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKK
Ga0318576_1009704923300031796SoilAQQCLEMARTFGDHGARMTLARMAQAWLRVADNCQDAKKVRPVMQQQQQIQPKDDSKKD
Ga0318497_1066500413300031805SoilMAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQ
Ga0318497_1075045013300031805SoilYRRRAQQCLEMAQTFGDRDVRRSLCYMAEVWLKLADRYQHADEVRPAMQQQQQIQPKDDD
Ga0318568_1078809723300031819SoilLEMVRTFGDHGARMTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0318499_1036751013300031832SoilMARTFGDRDARVTLAHMAQAWLRLADNCQDAKKVRPAMQQQQQ
Ga0318511_1005334923300031845SoilMARTFGDRDVLSHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0306919_1050474513300031879SoilMARAFGDRDARVTLAHMAQAWLRLADNCQDAKKVRPAMQQQQQMRPRTATESKP
Ga0306925_1187320013300031890SoilMARRFGDRDARVTLSHMAQVWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0310909_1010900363300031947SoilMAQTFRDRDARGSLCYMAEVWLRLADNYQHAKKGRPTMQQQQQIQPKDDSKKD
Ga0318530_1034935413300031959SoilMAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPK
Ga0318556_1031113023300032043SoilMAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQRIQ
Ga0318577_1015181123300032091SoilADEYRRRAQQCLEMARTFGDHGARMTLAHMAQAWLRVADDCQDAKKVRPVMQQQQQIQPKDDSKKD


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