Metagenome / Metatranscriptome Family F085421

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F085421
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	53 residues
Representative Sequence	MARTFGDRDARVTLAHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDGKKD
Number of Associated Samples	64
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	4.50 %
% of genes near scaffold ends (potentially truncated)	33.33 %
% of genes from short scaffolds (< 2000 bps)	95.50 %
Associated GOLD sequencing projects	61
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (59.459 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (29.730 % of family members)
Environment Ontology (ENVO)	Unclassified (54.955 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.865 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.68% β-sheet: 0.00% Coil/Unstructured: 54.32%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF13508	Acetyltransf_7	2.70
PF03401	TctC	1.80
PF04986	Y2_Tnp	1.80
PF01315	Ald_Xan_dh_C	1.80
PF07885	Ion_trans_2	1.80
PF02738	MoCoBD_1	0.90
PF00834	Ribul_P_3_epim	0.90
PF13185	GAF_2	0.90
PF12802	MarR_2	0.90
PF00583	Acetyltransf_1	0.90
PF03592	Terminase_2	0.90
PF13560	HTH_31	0.90
PF13384	HTH_23	0.90
PF04392	ABC_sub_bind	0.90
PF08734	GYD	0.90
PF03775	MinC_C	0.90
PF00239	Resolvase	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.80
COG0036	Pentose-5-phosphate-3-epimerase	Carbohydrate transport and metabolism [G]	0.90
COG0850	Septum site-determining protein MinC	Cell cycle control, cell division, chromosome partitioning [D]	0.90
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.90
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.90
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.90
COG3728	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	0.90
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.46 %
All Organisms	root	All Organisms	40.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.46 %
cellular organisms	root	All Organisms → cellular organisms	40.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.46 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.46 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	27.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.46 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	21.62 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.46 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	11.71 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.60 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	1.80 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.71 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.80 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.90 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.71 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.80 %
Rhodovulum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum	0.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.71 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.80 %
unclassified Rhodovulum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum	0.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.71 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.80 %
Rhodovulum sp. PH10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	0.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.90 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000655\|AF_2010_repII_A100DRAFT_1088402	Not Available	544	Open in IMG/M
3300000956\|JGI10216J12902_113147894	Not Available	775	Open in IMG/M
3300002906\|JGI25614J43888_10185175	Not Available	563	Open in IMG/M
3300004268\|Ga0066398_10093876	Not Available	686	Open in IMG/M
3300005332\|Ga0066388_100106432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3286	Open in IMG/M
3300005332\|Ga0066388_100810665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1527	Open in IMG/M
3300005332\|Ga0066388_101310573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	1249	Open in IMG/M
3300005332\|Ga0066388_101568764	All Organisms → cellular organisms → Bacteria → Proteobacteria	1156	Open in IMG/M
3300005332\|Ga0066388_102634536	Not Available	916	Open in IMG/M
3300005332\|Ga0066388_103030673	Not Available	858	Open in IMG/M
3300005332\|Ga0066388_103284055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	826	Open in IMG/M
3300005332\|Ga0066388_104874267	Not Available	682	Open in IMG/M
3300005332\|Ga0066388_106949961	Not Available	569	Open in IMG/M
3300005332\|Ga0066388_106997976	Not Available	567	Open in IMG/M
3300005332\|Ga0066388_107073199	Not Available	564	Open in IMG/M
3300005332\|Ga0066388_107601486	Not Available	543	Open in IMG/M
3300005363\|Ga0008090_15782671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	692	Open in IMG/M
3300005467\|Ga0070706_100238132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1699	Open in IMG/M
3300005467\|Ga0070706_101171714	Not Available	706	Open in IMG/M
3300005471\|Ga0070698_101279038	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300005518\|Ga0070699_100712291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	917	Open in IMG/M
3300005713\|Ga0066905_100555858	Not Available	964	Open in IMG/M
3300005713\|Ga0066905_101702085	Not Available	579	Open in IMG/M
3300005764\|Ga0066903_100469588	All Organisms → cellular organisms → Bacteria	2114	Open in IMG/M
3300005764\|Ga0066903_100776105	Not Available	1708	Open in IMG/M
3300005764\|Ga0066903_100865204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1629	Open in IMG/M
3300005764\|Ga0066903_101210169	Not Available	1403	Open in IMG/M
3300005764\|Ga0066903_101652156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1217	Open in IMG/M
3300005764\|Ga0066903_101980109	Not Available	1118	Open in IMG/M
3300005764\|Ga0066903_102437066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1012	Open in IMG/M
3300005764\|Ga0066903_102922870	Not Available	926	Open in IMG/M
3300005764\|Ga0066903_104960037	Not Available	706	Open in IMG/M
3300005764\|Ga0066903_105273731	Not Available	683	Open in IMG/M
3300005764\|Ga0066903_105346074	Not Available	678	Open in IMG/M
3300005764\|Ga0066903_105785608	Not Available	649	Open in IMG/M
3300005764\|Ga0066903_106395400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	614	Open in IMG/M
3300005764\|Ga0066903_108023126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	541	Open in IMG/M
3300005764\|Ga0066903_108205815	Not Available	534	Open in IMG/M
3300005764\|Ga0066903_108720597	Not Available	515	Open in IMG/M
3300005764\|Ga0066903_108884220	Not Available	510	Open in IMG/M
3300006797\|Ga0066659_10477325	Not Available	996	Open in IMG/M
3300009088\|Ga0099830_11551012	Not Available	552	Open in IMG/M
3300009792\|Ga0126374_10386989	Not Available	972	Open in IMG/M
3300010043\|Ga0126380_10498673	Not Available	934	Open in IMG/M
3300010043\|Ga0126380_11433401	Not Available	608	Open in IMG/M
3300010043\|Ga0126380_12268444	Not Available	503	Open in IMG/M
3300010046\|Ga0126384_10132812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1892	Open in IMG/M
3300010358\|Ga0126370_10883949	Not Available	805	Open in IMG/M
3300010358\|Ga0126370_10894074	Not Available	801	Open in IMG/M
3300010359\|Ga0126376_10790567	Not Available	925	Open in IMG/M
3300010359\|Ga0126376_10989991	Not Available	840	Open in IMG/M
3300010359\|Ga0126376_11797624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	650	Open in IMG/M
3300010359\|Ga0126376_12075904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	611	Open in IMG/M
3300010359\|Ga0126376_12654479	Not Available	550	Open in IMG/M
3300010360\|Ga0126372_10676109	Not Available	1004	Open in IMG/M
3300010360\|Ga0126372_11687305	Not Available	674	Open in IMG/M
3300010361\|Ga0126378_10266648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1810	Open in IMG/M
3300010361\|Ga0126378_12536008	Not Available	586	Open in IMG/M
3300010362\|Ga0126377_13254313	Not Available	525	Open in IMG/M
3300010362\|Ga0126377_13594764	Not Available	501	Open in IMG/M
3300010366\|Ga0126379_10220096	All Organisms → cellular organisms → Bacteria → Proteobacteria	1843	Open in IMG/M
3300010366\|Ga0126379_10435530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1368	Open in IMG/M
3300010366\|Ga0126379_12173620	Not Available	656	Open in IMG/M
3300010366\|Ga0126379_12812869	Not Available	582	Open in IMG/M
3300010398\|Ga0126383_12092522	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300010863\|Ga0124850_1080390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	971	Open in IMG/M
3300012189\|Ga0137388_11890613	Not Available	527	Open in IMG/M
3300012210\|Ga0137378_11074716	Not Available	719	Open in IMG/M
3300012361\|Ga0137360_10375742	Not Available	1194	Open in IMG/M
3300012362\|Ga0137361_11609055	Not Available	570	Open in IMG/M
3300012923\|Ga0137359_11605596	Not Available	538	Open in IMG/M
3300012971\|Ga0126369_10346405	All Organisms → cellular organisms → Bacteria	1506	Open in IMG/M
3300016294\|Ga0182041_11014530	Not Available	751	Open in IMG/M
3300016319\|Ga0182033_11395145	Not Available	631	Open in IMG/M
3300016404\|Ga0182037_10732341	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300016445\|Ga0182038_11137978	Not Available	694	Open in IMG/M
3300021560\|Ga0126371_10712482	All Organisms → cellular organisms → Bacteria	1151	Open in IMG/M
3300021560\|Ga0126371_11215145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	890	Open in IMG/M
3300026319\|Ga0209647_1078024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1647	Open in IMG/M
3300031543\|Ga0318516_10144864	All Organisms → cellular organisms → Bacteria	1363	Open in IMG/M
3300031543\|Ga0318516_10415409	Not Available	774	Open in IMG/M
3300031544\|Ga0318534_10458245	Not Available	730	Open in IMG/M
3300031544\|Ga0318534_10818290	Not Available	523	Open in IMG/M
3300031545\|Ga0318541_10796982	Not Available	527	Open in IMG/M
3300031561\|Ga0318528_10331148	Not Available	817	Open in IMG/M
3300031573\|Ga0310915_10003795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8216	Open in IMG/M
3300031573\|Ga0310915_10047868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2749	Open in IMG/M
3300031640\|Ga0318555_10255082	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300031668\|Ga0318542_10437694	Not Available	677	Open in IMG/M
3300031680\|Ga0318574_10751491	Not Available	571	Open in IMG/M
3300031681\|Ga0318572_10218541	All Organisms → cellular organisms → Bacteria	1116	Open in IMG/M
3300031723\|Ga0318493_10811284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	527	Open in IMG/M
3300031736\|Ga0318501_10089438	All Organisms → cellular organisms → Bacteria	1519	Open in IMG/M
3300031744\|Ga0306918_10249427	All Organisms → cellular organisms → Bacteria	1354	Open in IMG/M
3300031751\|Ga0318494_10543510	Not Available	678	Open in IMG/M
3300031763\|Ga0318537_10040997	All Organisms → cellular organisms → Bacteria → Proteobacteria	1666	Open in IMG/M
3300031771\|Ga0318546_10487615	Not Available	864	Open in IMG/M
3300031781\|Ga0318547_10994027	Not Available	524	Open in IMG/M
3300031792\|Ga0318529_10293171	Not Available	757	Open in IMG/M
3300031796\|Ga0318576_10097049	All Organisms → cellular organisms → Bacteria	1341	Open in IMG/M
3300031805\|Ga0318497_10665004	Not Available	584	Open in IMG/M
3300031805\|Ga0318497_10750450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	547	Open in IMG/M
3300031819\|Ga0318568_10788097	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300031832\|Ga0318499_10367510	Not Available	552	Open in IMG/M
3300031845\|Ga0318511_10053349	All Organisms → cellular organisms → Bacteria → Proteobacteria	1627	Open in IMG/M
3300031879\|Ga0306919_10504745	Not Available	932	Open in IMG/M
3300031890\|Ga0306925_11873200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	571	Open in IMG/M
3300031947\|Ga0310909_10109003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2235	Open in IMG/M
3300031959\|Ga0318530_10349354	Not Available	612	Open in IMG/M
3300032043\|Ga0318556_10311130	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300032091\|Ga0318577_10151811	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.67%
Loam	Environmental → Terrestrial → Soil → Loam	33.33%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	29.73%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.60%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.90%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	29.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.13%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	23.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.31%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.41%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.90%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.90%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A100DRAFT_10884022	3300000655	Forest Soil	LEMAQTFRDRQARGALSYMAQVWLRLADNYQDAKKVRPAMQQQQQIQPKDDSKKS*
JGI10216J12902_1131478941	3300000956	Soil	MARTFGDHGARATLSHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDGKKD*
JGI25614J43888_101851751	3300002906	Grasslands Soil	MARTFGDNGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0066398_100938762	3300004268	Tropical Forest Soil	MAHTFRDRQARGALSYMAQVWLRLADNYQDAKKVRPAMQQQQQIQPKDDSKKF*
Ga0066388_1001064323	3300005332	Tropical Forest Soil	MAQTFRDRDARGSLCYMAEVWLRLADNAKKVRPAMQQQQQIQPKDGSKKD*
Ga0066388_1008106653	3300005332	Tropical Forest Soil	MARTFGDRDARGMLSHMAQVWLRLADNCRDAKKARPAMQQQQQIQSKDDSKKD*
Ga0066388_1013105733	3300005332	Tropical Forest Soil	MAHTFGDRNARASLCYMAEVWLRLADNCQDAKKVRPAMQRQQQIQPKDNSRRD*
Ga0066388_1015687642	3300005332	Tropical Forest Soil	MARTFGDRDARVTLAHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDNGKKD*
Ga0066388_1026345363	3300005332	Tropical Forest Soil	MAQTFGDRDARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPKDDGKKD*
Ga0066388_1030306731	3300005332	Tropical Forest Soil	MARTFGDRGARVVLSHMAQAWLRLADNCQDAKNVRPAMQQQQQIQPKDDSKKD*
Ga0066388_1032840553	3300005332	Tropical Forest Soil	MAAAFRDPEARSSLSYMAEVWLRLADNCQVRPAMQQQQQIQPKDDG
Ga0066388_1048742672	3300005332	Tropical Forest Soil	RRAQQCLEMAGTFRDREARATLSHMAQAWLRAADNCQDAKKVRPAMQQQQQIQPKDDGRKD*
Ga0066388_1069499612	3300005332	Tropical Forest Soil	MARAFGDRDARVTLAHMAQAWLRLADNYQGARKVQLAVQQQHQIQAKDDDRE*
Ga0066388_1069979761	3300005332	Tropical Forest Soil	MARTFGDHGARVTLAHMAQAWLRVADNCQDAKKVPPAMQQQQQIQPKDDSKKD*
Ga0066388_1070731992	3300005332	Tropical Forest Soil	MAAAFRDPEARSSLSYMAEVWLRLADNCQVRPAMQQQQQIQPKDDGKKD*
Ga0066388_1076014861	3300005332	Tropical Forest Soil	MARTFGDHGARATLSHMAQAWLRVADNCQDAKKVRPAMQQQQQIQ
Ga0008090_157826711	3300005363	Tropical Rainforest Soil	MARAFGDRDARVTLAHMAQAWLRWAHNSQDAKKVRPAVQQQQQIQPKDGDRE*
Ga0070706_1002381322	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MARTFGDNGARATLAHMAQAWLRVADNCQDAKGAAVQQQQQIQPNDDKE*
Ga0070706_1011717141	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MAGTFREREARVSLSYMAEVWLRLADNSQDAKGAAVQQQRQIQPNDDQE*
Ga0070698_1012790382	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VLRDGAHVWRPRRAGHLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0070699_1007122911	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MVGTFRDGDARAALSHMAQVWLRLADKEVQPAVQQQQQIQPKKE*
Ga0066905_1005558582	3300005713	Tropical Forest Soil	MARTFGDNGARVTLAHMAQAWLRVADNCQDAKKVRAAIRQQQQIQPKDDSKKD*
Ga0066905_1017020851	3300005713	Tropical Forest Soil	MAHTFRDRQASGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0066903_1004695882	3300005764	Tropical Forest Soil	MARAFGDRDARVTLAHMAQTWLRLADNFQDAKKVRPAVQQQQQMQPKDGERE*
Ga0066903_1007761053	3300005764	Tropical Forest Soil	MAAAFRDREARISPSYMAQVWLRLADNCQGVKEIRPAMQQQPQIQPSDNGKKD*
Ga0066903_1008652043	3300005764	Tropical Forest Soil	MARTFGDRDARGSLCYMAEVWLRLADNYQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0066903_1012101692	3300005764	Tropical Forest Soil	MARTFGDHGARVTLAHMAQAWLRVADNCPDAKKVRPAMQQQQQIQPKDNGKKD*
Ga0066903_1016521563	3300005764	Tropical Forest Soil	MAQTFGDRNGRGSLCYMAEVWLRLADNYQDAKKVRPVMQQQQQIQPKDDGKKD*
Ga0066903_1019801092	3300005764	Tropical Forest Soil	MAQTFADRDARGSLCYMAEVWPKLADRYQDADEVRPAMQQQQQIQPKDDGKKD*
Ga0066903_1024370661	3300005764	Tropical Forest Soil	MARTFGDHGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDD
Ga0066903_1029228701	3300005764	Tropical Forest Soil	MARTFGDRDARVVLSHMAQAWLRLADNCKDAKKVRPAMQQQQQIQPKDDDRQ*
Ga0066903_1049600371	3300005764	Tropical Forest Soil	MARTFGDHGVRVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQRIQPKDDSKKD*
Ga0066903_1052737311	3300005764	Tropical Forest Soil	MARTFGDQGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKK
Ga0066903_1053460742	3300005764	Tropical Forest Soil	MAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPNDDGKKD*
Ga0066903_1057856081	3300005764	Tropical Forest Soil	MAQAFGDRNGRGSLCYMADVWLKLADRYQDAKTVRPTMQQQQQIQPKDDSKKD*
Ga0066903_1063954001	3300005764	Tropical Forest Soil	MAQTFGDRDVRGSLCYMAEVWLKLADRYQDADEVRPAMQRQQQIQPKDDSKKD*
Ga0066903_1080231261	3300005764	Tropical Forest Soil	MARTFGDRDSRVTLAHMAQVWLRLADNYQDAKKVRPAMQQQQQIQPKDNSRKD*
Ga0066903_1082058151	3300005764	Tropical Forest Soil	MARTFGDRNARVILSHMAQAWLRLADNCQDARKVRPAMRQQQQIQPKDDDKKK*
Ga0066903_1087205971	3300005764	Tropical Forest Soil	MAHTFGDRDARGSLCYMAEVWLRVADNCQDAKKVRPAMQQQQQIQPKDDNKKD*
Ga0066903_1088842201	3300005764	Tropical Forest Soil	MARAFGNRDARVTLAHMAQAWLRLADKCQDAKKVRPAMQQQQQIQPK
Ga0066659_104773251	3300006797	Soil	MARTFGDHGARATLSHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDSAKKD*
Ga0099830_115510121	3300009088	Vadose Zone Soil	MARTFGDHGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0126374_103869892	3300009792	Tropical Forest Soil	MARTFGDRDARVILSHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPRDDGKKD*
Ga0126380_104986731	3300010043	Tropical Forest Soil	RRRAQQCLEMARTFGDQRAQVTLAHMAQAWLRVANNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0126380_114334011	3300010043	Tropical Forest Soil	MARTFGDHGARATLSHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0126380_122684441	3300010043	Tropical Forest Soil	MARTFGDHGGRVTLADMAQAWLRVADNCKDAKKVRPAMQQQEQIQPKDDSKKN*
Ga0126384_101328122	3300010046	Tropical Forest Soil	MARTFGDHGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDGKKD*
Ga0126370_108839492	3300010358	Tropical Forest Soil	LSNALKFGHNGARVTLAHMAQAWLRLADNCQDAKKVRPAMQPQRQIQPKDDSKKD*
Ga0126370_108940741	3300010358	Tropical Forest Soil	MARTFGDQGARVTLAHMAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0126376_107905671	3300010359	Tropical Forest Soil	MARTFGDHGARATLSHMAQAWLRAADNCQDAKKVRPAMQQQQQIQPKDDGNKD*
Ga0126376_109899911	3300010359	Tropical Forest Soil	MARAFGDRDARITLAHMAQAWLRLADNYQGARKVQPAVQQQQQIQPKDDDGG*
Ga0126376_117976241	3300010359	Tropical Forest Soil	RAHQCLEMARTFGDRGARGSLCYMAEVWLRLADNCQDARKSRPAMQQQQQIQPKDDGKKD
Ga0126376_120759041	3300010359	Tropical Forest Soil	DRDARVILSHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPRDDGKKD*
Ga0126376_126544792	3300010359	Tropical Forest Soil	MAQTFGDRDARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPK
Ga0126372_106761091	3300010360	Tropical Forest Soil	MARTFGDHGARATLSHMAQAWLRAADNCQDAKKVRPAMQQQQQIQPKDNGKKD*
Ga0126372_116873051	3300010360	Tropical Forest Soil	MAQTFADRDARGSLCYMAEVWPKLADRYQDADEVRPAMQQQQQIQPKDDSKKD*
Ga0126378_102666484	3300010361	Tropical Forest Soil	MAHTFGDRDARGSLCYMVEVWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0126378_125360081	3300010361	Tropical Forest Soil	MARAFGDRDARITLAHMAQAWLRLADNYQGARKVQPAVQQQQQIQPKDDD
Ga0126377_132543132	3300010362	Tropical Forest Soil	FGDHGGRVTLADMAQAWLRVADNCKDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0126377_135947641	3300010362	Tropical Forest Soil	RTFGDRDARGMLSHMAQVWLRLADNCRDAKKARPAMQQQQQIQPKDDGKKD*
Ga0126379_102200963	3300010366	Tropical Forest Soil	MARAFGDRDPRVTLAHMAQAWLRWAHNCQDAKKVRPAVQQQQQIQPKDGDRE*
Ga0126379_104355302	3300010366	Tropical Forest Soil	MARTFGDQGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0126379_121736201	3300010366	Tropical Forest Soil	MARTFGDQGARVTLAHMAQVWLRVADNYRDAKKVRPAMQQQQQIQPKDNSRKD*
Ga0126379_128128692	3300010366	Tropical Forest Soil	MARAFGDPDARVTLAHMAQAWLRLADKCQDAKKVRPAMQQQQQIQAKDGDRE*
Ga0126383_120925221	3300010398	Tropical Forest Soil	TFGDHGARVTLAHMAQAWLRVADNCQDAKKVRLAMQQQQQIQPKDDSKKD*
Ga0124850_10803901	3300010863	Tropical Forest Soil	LSNALKFGHNGARVTQAWLRLADNCQDAKKVRPAMQPQRQIQPKDDSKKD*
Ga0137388_118906131	3300012189	Vadose Zone Soil	RAQQCLEMARTFGDNGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0137378_110747161	3300012210	Vadose Zone Soil	MARTFGDNGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDGKKD*
Ga0137360_103757422	3300012361	Vadose Zone Soil	MARAFGDRDARITLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0137361_116090551	3300012362	Vadose Zone Soil	NGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD*
Ga0137359_116055961	3300012923	Vadose Zone Soil	MARTFGDHGARATLSHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKD
Ga0126369_103464052	3300012971	Tropical Forest Soil	MARAFGDRDARVTLAHMAQAWLRWAHNCQDAKKVRPAVQQQQQIQPKDGDRE*
Ga0182041_110145301	3300016294	Soil	MARAFGDRDARVTLAHMAQAWLRLADNCQDAKKVRPAMQQQQQMQPKDGDGE
Ga0182033_113951451	3300016319	Soil	MAHTFKDRDARGSLCYMAEVWLRLADNCQDAKKVRPAMQQQQQIQPKDDGKKD
Ga0182037_107323412	3300016404	Soil	MAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPKD
Ga0182038_111379781	3300016445	Soil	FFHCRSQRVGPTRTFRDRQARCALSYMAQLWLRLADNCQAAKKVRPAMQQQQQIQPKDDGKKD
Ga0126371_107124823	3300021560	Tropical Forest Soil	MARTFGDHGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0126371_112151451	3300021560	Tropical Forest Soil	MARTFGDQGARVTLAHMAQAWLRVADNYQDAKKVRPAMQQQQQIQPKDDGKE
Ga0209647_10780243	3300026319	Grasslands Soil	MARTFGDNGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0318516_101448641	3300031543	Soil	MAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPKDDGKKD
Ga0318516_104154092	3300031543	Soil	GFKMFSDGHLEMARTFGDRDARVVLSHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0318534_104582452	3300031544	Soil	MARRFGDRDARVTLAHMAQDWLRLADNCQDAKKVRPAMQQQQQIQPRDDGKKG
Ga0318534_108182901	3300031544	Soil	MARTFGDQGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKN
Ga0318541_107969821	3300031545	Soil	MARTFGDQGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKND
Ga0318528_103311481	3300031561	Soil	MARTFGDRDARVVLSHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0310915_100037955	3300031573	Soil	MAQTFGDRDVRRSLCYMAEVWLKLADRYQHADEVRPAMQQQQQIQPKDDD
Ga0310915_100478683	3300031573	Soil	MARTFGDRDARVTLAHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDGKKD
Ga0318555_102550821	3300031640	Soil	MAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQRIQPKDDGKKD
Ga0318542_104376941	3300031668	Soil	MARTFGDQGARVTLAHMAQVWLRVADNYRDAKKVRPAIQQQQQI
Ga0318574_107514911	3300031680	Soil	MAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPKDDGKK
Ga0318572_102185412	3300031681	Soil	MARTFGDHGARMTLAHMAQAWLRVADDCQDAKKVRPVMQQQQQIQPKDDSKKD
Ga0318493_108112841	3300031723	Soil	AQQCLEMAQTFGDRDVRRSLCYMAEVWLKLADRYQHADEVRPAMQQQQQIQPKDDD
Ga0318501_100894381	3300031736	Soil	MAHTFRDRQARGALSYMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDGKKD
Ga0306918_102494272	3300031744	Soil	MVRTFGDHGARMTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0318494_105435102	3300031751	Soil	MARTFGDRDARVILSHMAQAWLRLADNCQRAQEVRPAMQQQQQIQPKDDSKND
Ga0318537_100409972	3300031763	Soil	MARTFGDRDARVVLSHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKD
Ga0318546_104876151	3300031771	Soil	QCLEMARTFGDQGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKND
Ga0318547_109940271	3300031781	Soil	CLEMARTFGDQGARVTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKND
Ga0318529_102931711	3300031792	Soil	MFSDGHLEMARTFGDRDARVVLSHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKK
Ga0318576_100970492	3300031796	Soil	AQQCLEMARTFGDHGARMTLARMAQAWLRVADNCQDAKKVRPVMQQQQQIQPKDDSKKD
Ga0318497_106650041	3300031805	Soil	MAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQ
Ga0318497_107504501	3300031805	Soil	YRRRAQQCLEMAQTFGDRDVRRSLCYMAEVWLKLADRYQHADEVRPAMQQQQQIQPKDDD
Ga0318568_107880972	3300031819	Soil	LEMVRTFGDHGARMTLAHMAQAWLRVADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0318499_103675101	3300031832	Soil	MARTFGDRDARVTLAHMAQAWLRLADNCQDAKKVRPAMQQQQQ
Ga0318511_100533492	3300031845	Soil	MARTFGDRDVLSHMAQAWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0306919_105047451	3300031879	Soil	MARAFGDRDARVTLAHMAQAWLRLADNCQDAKKVRPAMQQQQQMRPRTATESKP
Ga0306925_118732001	3300031890	Soil	MARRFGDRDARVTLSHMAQVWLRLADNCQDAKKVRPAMQQQQQIQPKDDSKKD
Ga0310909_101090036	3300031947	Soil	MAQTFRDRDARGSLCYMAEVWLRLADNYQHAKKGRPTMQQQQQIQPKDDSKKD
Ga0318530_103493541	3300031959	Soil	MAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQQIQPK
Ga0318556_103111302	3300032043	Soil	MAHTFRDRQARGALSYMAQVWLRLADNCQDAKKVRPAMQQQQRIQ
Ga0318577_101518112	3300032091	Soil	ADEYRRRAQQCLEMARTFGDHGARMTLAHMAQAWLRVADDCQDAKKVRPVMQQQQQIQPKDDSKKD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085421

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences