Metagenome Family F085420

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085420
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	74 residues
Representative Sequence	LGFEGAVTVRPPVACENRGRLMRWPMLKPCVTEESAISVTFEMLVASGVPTKNDCPYATLVGADVIVGREPLNR
Number of Associated Samples	92
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	91.89 %
% of genes near scaffold ends (potentially truncated)	12.61 %
% of genes from short scaffolds (< 2000 bps)	83.78 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.19

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.694 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (20.721 % of family members)
Environment Ontology (ENVO)	Unclassified (36.937 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.243 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 2.94% β-sheet: 0.00% Coil/Unstructured: 97.06%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.19
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.19
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF00106	adh_short	2.70
PF11759	KRTAP	2.70
PF00501	AMP-binding	1.80
PF03720	UDPG_MGDP_dh_C	1.80
PF03721	UDPG_MGDP_dh_N	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.90
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.90
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.90
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.90
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.69 %
Unclassified	root	N/A	6.31 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.69 %
Unclassified	root	N/A	6.31 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.69 %
Unclassified	root	N/A	6.31 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	24.32 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	24.32 %
Unclassified	root	N/A	6.31 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.90 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	24.32 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	24.32 %
Unclassified	root	N/A	6.31 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.32 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	24.32 %
Unclassified	root	N/A	6.31 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	24.32 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.32 %
Unclassified	root	N/A	6.31 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	24.32 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.32 %
Unclassified	root	N/A	6.31 %
Paenibacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	24.32 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.32 %
Unclassified	root	N/A	6.31 %
Paenibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_9215218	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1378	Open in IMG/M
3300000955\|JGI1027J12803_100120568	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300000955\|JGI1027J12803_102008003	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300000956\|JGI10216J12902_108737311	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300004114\|Ga0062593_102346821	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300004156\|Ga0062589_100918922	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300004463\|Ga0063356_105607797	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300005175\|Ga0066673_10701186	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300005289\|Ga0065704_10004061	All Organisms → cellular organisms → Bacteria	5094	Open in IMG/M
3300005289\|Ga0065704_10875701	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300005290\|Ga0065712_10154784	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1343	Open in IMG/M
3300005294\|Ga0065705_10052456	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300005294\|Ga0065705_11100360	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300005294\|Ga0065705_11112586	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300005355\|Ga0070671_100931578	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	759	Open in IMG/M
3300005365\|Ga0070688_101040595	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300005437\|Ga0070710_10906034	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300005450\|Ga0066682_10772591	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300005457\|Ga0070662_101801232	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300005467\|Ga0070706_100017077	All Organisms → cellular organisms → Bacteria	6705	Open in IMG/M
3300005546\|Ga0070696_101318123	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300005546\|Ga0070696_101654347	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300005553\|Ga0066695_10178342	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300005556\|Ga0066707_10907137	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	540	Open in IMG/M
3300005559\|Ga0066700_10600319	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300005575\|Ga0066702_10987366	Not Available	504	Open in IMG/M
3300005576\|Ga0066708_10390049	Not Available	894	Open in IMG/M
3300005598\|Ga0066706_10446214	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1031	Open in IMG/M
3300005937\|Ga0081455_10114042	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2142	Open in IMG/M
3300006046\|Ga0066652_100193026	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1746	Open in IMG/M
3300006046\|Ga0066652_100724652	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	947	Open in IMG/M
3300006797\|Ga0066659_10635439	Not Available	868	Open in IMG/M
3300009012\|Ga0066710_100531063	All Organisms → cellular organisms → Bacteria	1777	Open in IMG/M
3300009137\|Ga0066709_104117778	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300009137\|Ga0066709_104306177	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300009156\|Ga0111538_12009230	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300010042\|Ga0126314_11512092	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	504	Open in IMG/M
3300010364\|Ga0134066_10121564	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	786	Open in IMG/M
3300012198\|Ga0137364_10065898	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2463	Open in IMG/M
3300012198\|Ga0137364_10087522	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2168	Open in IMG/M
3300012198\|Ga0137364_10501243	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	913	Open in IMG/M
3300012198\|Ga0137364_10965437	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300012199\|Ga0137383_10460656	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	931	Open in IMG/M
3300012201\|Ga0137365_10054369	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3026	Open in IMG/M
3300012203\|Ga0137399_11227969	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	631	Open in IMG/M
3300012205\|Ga0137362_10049009	All Organisms → cellular organisms → Bacteria	3434	Open in IMG/M
3300012205\|Ga0137362_10672215	Not Available	891	Open in IMG/M
3300012208\|Ga0137376_10250805	All Organisms → cellular organisms → Bacteria	1535	Open in IMG/M
3300012208\|Ga0137376_11002223	Not Available	715	Open in IMG/M
3300012209\|Ga0137379_10031275	All Organisms → cellular organisms → Bacteria	5123	Open in IMG/M
3300012209\|Ga0137379_11002461	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	740	Open in IMG/M
3300012210\|Ga0137378_10005815	All Organisms → cellular organisms → Bacteria	10685	Open in IMG/M
3300012285\|Ga0137370_10059964	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2062	Open in IMG/M
3300012350\|Ga0137372_10101497	All Organisms → cellular organisms → Bacteria	2413	Open in IMG/M
3300012356\|Ga0137371_10686877	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	783	Open in IMG/M
3300012357\|Ga0137384_10117599	All Organisms → cellular organisms → Bacteria	2222	Open in IMG/M
3300012357\|Ga0137384_10760540	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	785	Open in IMG/M
3300012359\|Ga0137385_10063848	All Organisms → cellular organisms → Bacteria	3277	Open in IMG/M
3300012582\|Ga0137358_10271297	All Organisms → cellular organisms → Bacteria	1153	Open in IMG/M
3300012582\|Ga0137358_10540807	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	784	Open in IMG/M
3300012899\|Ga0157299_10033910	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300012923\|Ga0137359_10030620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus	4617	Open in IMG/M
3300012951\|Ga0164300_10404219	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300014157\|Ga0134078_10120181	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1004	Open in IMG/M
3300014166\|Ga0134079_10080857	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1206	Open in IMG/M
3300015356\|Ga0134073_10148577	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	739	Open in IMG/M
3300015357\|Ga0134072_10294151	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300015373\|Ga0132257_104159610	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300018000\|Ga0184604_10128148	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300018028\|Ga0184608_10152172	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	998	Open in IMG/M
3300018054\|Ga0184621_10045330	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1453	Open in IMG/M
3300018054\|Ga0184621_10076418	All Organisms → cellular organisms → Bacteria	1159	Open in IMG/M
3300018066\|Ga0184617_1083079	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300018071\|Ga0184618_10430376	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	557	Open in IMG/M
3300018076\|Ga0184609_10340095	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	701	Open in IMG/M
3300018433\|Ga0066667_11138804	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300018433\|Ga0066667_11598706	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300018476\|Ga0190274_13154209	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	554	Open in IMG/M
3300019356\|Ga0173481_10689754	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300019886\|Ga0193727_1010037	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3672	Open in IMG/M
3300019887\|Ga0193729_1186507	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300019888\|Ga0193751_1019079	All Organisms → cellular organisms → Bacteria	3418	Open in IMG/M
3300020001\|Ga0193731_1150178	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300020002\|Ga0193730_1060940	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1082	Open in IMG/M
3300020006\|Ga0193735_1102775	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	795	Open in IMG/M
3300021078\|Ga0210381_10115438	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	885	Open in IMG/M
3300021344\|Ga0193719_10148153	All Organisms → cellular organisms → Bacteria	1013	Open in IMG/M
3300021418\|Ga0193695_1083403	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300022694\|Ga0222623_10412717	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	513	Open in IMG/M
3300022756\|Ga0222622_11005284	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	613	Open in IMG/M
3300025898\|Ga0207692_10802243	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300025910\|Ga0207684_10114773	All Organisms → cellular organisms → Bacteria	2306	Open in IMG/M
3300025916\|Ga0207663_10475415	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300025933\|Ga0207706_11539260	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300025939\|Ga0207665_11358108	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300025986\|Ga0207658_11239028	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	682	Open in IMG/M
3300026317\|Ga0209154_1206347	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300026548\|Ga0209161_10573688	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300026761\|Ga0207495_103806	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300027682\|Ga0209971_1021502	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1534	Open in IMG/M
3300027748\|Ga0209689_1092513	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1578	Open in IMG/M
3300028807\|Ga0307305_10547746	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300028814\|Ga0307302_10133681	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1197	Open in IMG/M
3300028878\|Ga0307278_10027042	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2634	Open in IMG/M
3300028881\|Ga0307277_10326561	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	682	Open in IMG/M
3300031231\|Ga0170824_111064828	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	659	Open in IMG/M
3300031231\|Ga0170824_114458221	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	611	Open in IMG/M
3300031231\|Ga0170824_123589370	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300031446\|Ga0170820_11094240	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	892	Open in IMG/M
3300031716\|Ga0310813_11208663	Not Available	696	Open in IMG/M
3300033412\|Ga0310810_11044675	Not Available	690	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.19%
Host-Associated	Host-Associated	10.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.18%
Plants	Host-Associated → Plants	10.81%
Aquatic	Environmental → Aquatic	9.01%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.18%
Sediment	Environmental → Aquatic → Sediment	8.11%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.50%
Freshwater	Environmental → Aquatic → Freshwater	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.17%
Loam	Environmental → Terrestrial → Soil → Loam	9.01%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.60%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.70%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	45.05%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	19.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.11%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.11%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.60%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.70%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	20.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	15.32%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.21%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.60%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.70%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	1.80%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.80%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.90%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021418	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026761	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A5-11 (SPAdes)	Environmental	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_00279960	2088090015	Soil	LGFEGAVTFKPPVACENWGRLMRWPMSKPCVWQPSAINVTLEMLAASGVPTKNDCPYPTLVGAEVIVGREPLNK
JGI1027J12803_1001205681	3300000955	Soil	MGFEGAVTFRPPLAWEKAGRFMCWPMLKPCVTEPSEINVTCKMLVASGVPTKNDWPYATLVGADVIVGRE
JGI1027J12803_1020080032	3300000955	Soil	LGFEGAVTLRPSVVCENDGRMMRWLILKPCVTEVRGIRLTVVMLAPSGVPTKNDCPYATFVGADVIVGREPWNR*
JGI10216J12902_1087373112	3300000956	Soil	LGFEGVVTFRPPVACENRGRLMRWSMLNPCVTDDSLISVTLETLVASGVPTKNDCPYTTLAGADVIVGRWP*
Ga0062593_1023468212	3300004114	Soil	LGFEGAVTFRPPAACENKGRLIRWPMLKSCVTEESAISVTFEMLGASGVPTKNVCPYPTLDGADVIVGREP*
Ga0062589_1009189222	3300004156	Soil	LGFEGAVTFRPPVACENRGRLMRWPMLKPCVTEESASSVILEILAALGVPTKNDCPYATLVGADVIVGREPWNR*
Ga0063356_1056077972	3300004463	Arabidopsis Thaliana Rhizosphere	LGFEGAVTFRPPAVCEKRGRLMRWPILKPCVTEESVTNVTFEMLVACGVPTKNDCPYATLAGAEVILGREPLNR*
Ga0066673_107011862	3300005175	Soil	LGFEGAVTLRPSVVCENDGRMMRWLILKPCVTEVRGIRLTVVMLAPSGVPTKNDCPYATFVGADVIVGREPRNR*
Ga0065704_100040612	3300005289	Switchgrass Rhizosphere	LGFEGVVTFRPPVACENKGRLMRWPMLKPCVTAESAISVTLEMLVASGVPTKNDCPYATLVGADVIVGRDPLNR*
Ga0065704_108757011	3300005289	Switchgrass Rhizosphere	MLRFEGAVTFRPPVPCENRGRLMRWPILKSCVTEESAINVTLEMLVASGVPTKNDSPYATLVGADVIVGREPWNRYGGEYISAV
Ga0065712_101547844	3300005290	Miscanthus Rhizosphere	VLAFEGAVTFRAPLACEKAGRLIRWPILKPCVTEESAISVTFEMLAASGVATKNDCPYVTFVGAEVIVGRAPLNR*
Ga0065705_100524561	3300005294	Switchgrass Rhizosphere	LEFEGAVTFRPPVACENKGRLMRWPMLKPCVTDESAISVTFEILGPSGVPTKNDSPYATFAGADVIVGREPLNR*
Ga0065705_111003601	3300005294	Switchgrass Rhizosphere	LGLEGAVTFRPPVACENKGRLMRWPMLKPCVTAESAISVTLEMLVASGVPTKNDSPYPTLDGADVILGREPWNR*
Ga0065705_111125861	3300005294	Switchgrass Rhizosphere	MLRFEGALTVRPPVACENKGRLMRWPMLKPCVTDESAISVTLEMLGPSGVPTKNDSPYPTLNGADVIVGREPWNR*
Ga0070671_1009315782	3300005355	Switchgrass Rhizosphere	LAFEGAVTFRAPLACEKAGRLIRWPILKPCVTEESAISVTFEMLAASGVATKNDCPYVTFVGAEVIVGRAPLNR*
Ga0070688_1010405952	3300005365	Switchgrass Rhizosphere	LAFEGAVTFRAPLACEKAGRLIRWPILKPCVTEESAISVTFEMLAASGVATKNDCPYVTFVGAE
Ga0070710_109060341	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LSPPVASEKDGRMMRCPMLKLWVTEGSASSVTFEMFVASGVPTKNDCPYGMFAGADAIVGREPLNR*
Ga0066682_107725912	3300005450	Soil	LEFEGDVTFRPPVACENDGRLIRWPMLKPCVTEESAISVTLEMLAASGVPTKNDWPYATLVGADVIVGREPWNR*
Ga0070662_1018012322	3300005457	Corn Rhizosphere	LGFEGAVTFKPPVTCENRGRLMRWPMLKPCVTEESAISVTFEMLAASGVPTKNDCPYKTLAGADVIAGRGPWNR*
Ga0070706_1000170774	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	LGFEGAVTFRPPVACENRGRLIRWPMLKPCVTEESATSVTFEMLVALGVPTKNDCPYATLVGADVIVGREPLNR*
Ga0070696_1013181232	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	ARFAFDGAVTLSPPVASEKDGRMMRWLMLKLWVTEGSASSVTFEMFVASGVPTKNDCPYGMFAGADAIVGREPLNR*
Ga0070696_1016543471	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	VACENEGRLMRWPMLKLCVTEESAINVTFEMLVALGVPTKNDCPYATLVGADVIVGREPLNK*
Ga0066695_101783422	3300005553	Soil	LEFEGDVTFRPPVACENRGRLMRWPMLKPCVTEESAISVTLEMLAASGVPTKNDWPYATLVGADVIVGREPWNR*
Ga0066707_109071372	3300005556	Soil	VFAFEGAVTFRPPLACEKAGRFIRWPILKPCVTEESAISVTFAMLAGSGVPTKNDCPYVTFVGADVIVGRAPLNR*
Ga0066700_106003192	3300005559	Soil	LGFKGAVTVRPPVACENKGRLMRWLILKPCVTEESAISVTFEMLVASGVPTKNDCPYPTLVGADVIVGREPWNR*
Ga0066702_109873661	3300005575	Soil	LSPPVASEKDGRMMRWLMLKLWVTEGSASSVTFEMFVASGVPTKNDCPYGMLAGADAIVGREPLNR*
Ga0066708_103900492	3300005576	Soil	LAFEGAVTFRPPVACENRGRLMRWPMLKPCVTDESAISVTFEMLAAFGVPTKNDCPDATLVGADVIVGREPWNR*
Ga0066706_104462141	3300005598	Soil	LGPEGAVMFRPPVACENRGRLMRWPILTPCVTEESAISVTLEMLVASGVPTKNDCPYPTLVGADVIVGREPWNR*
Ga0081455_101140421	3300005937	Tabebuia Heterophylla Rhizosphere	LAFEGAVTFRPPAPSEKGGRTMRWPMLKPCVTEESAISVTLEILVASDVPTKNDCPYATLVGADVIVGREPWNR*
Ga0066652_1001930264	3300006046	Soil	LGFEGAVTFRPPVACENRGRLMRWLMLKPCVTEGSAISVTFEMLVALGVPTKNDCLYSRLVGADVIVGREPWNRYGGE*
Ga0066652_1007246521	3300006046	Soil	MFRPPVACENRGRLMRWPILKSCVTEESAISVTLEMLVASGVPTKNDCPYPTLVGADVIVGREPWNR*
Ga0066659_106354391	3300006797	Soil	LGVEGAVTFRPPVACVNASRLMRWPMLKPCVTEESAISVTCEMLVALGVPTKNDCPYATLVGADVIVGREPWNR*
Ga0066710_1005310632	3300009012	Grasslands Soil	LGFEGAVTFKPPVAWEKAGRLMRWPMLKPWVTEESAISVTLEMFAASGVPTKNDCPYTTLVGADAIVGREPLNK
Ga0066709_1041177781	3300009137	Grasslands Soil	SMLSGGGVVLEFEGVVTFRAPLACEKAGRFIRWLILKPCVPEESAISVTFEMLAASGVPTKNDWPYVTLVGADMMVGREPLNR*
Ga0066709_1043061771	3300009137	Grasslands Soil	VLLGFEGAVTFKPPVAWEKAGRLMRWPMLKPWVTEESAISVTLEMFAASGVPTKNDCPYTTLVGADAIVGREPLNK*
Ga0111538_120092301	3300009156	Populus Rhizosphere	MVLGLEGAVTLRPPVACENNSRLMCWPMLKPCVTEPSAMNVTCEMLVASGVPTKNDWPYVMPAGADVIVGREPLNR*
Ga0126314_115120922	3300010042	Serpentine Soil	LGFEGAVTFRPPVVCENEGRLMRWPMLKPCVTEESAISVTFEMLVALGVPTKNDCPYATLVGADVIVGRGPWNR*
Ga0134066_101215641	3300010364	Grasslands Soil	LGFEGAVTLRPPVACENRGRLMRWPMLKPCVTEESASSVTFEMLVALGVPTKNDCPYRTLVGADVIVGRESWNR*
Ga0137364_100658981	3300012198	Vadose Zone Soil	MLGFEGAVTFRPPVACENVGRLMRWLILKPCVTEESAISETFEMLVALGVPTKNDCPYPTLVGADVIVGREPWNR*
Ga0137364_100875223	3300012198	Vadose Zone Soil	VLRLEGAVTLRPPVACENAGRLMRWPILKPCVTEESAINVTFEMLVMSGVPTKNECPYRTFLGADVIVGREPWNR*
Ga0137364_105012431	3300012198	Vadose Zone Soil	LGFKGAVTVRPPVACENKGRVVGWLILKPCVTEESAISVTFEMLVASGVPTKNDCPYPTLVGADVIVGREPWNR*
Ga0137364_109654371	3300012198	Vadose Zone Soil	LGFEGTVTFRPPVSCENSGRLMRWPMLKPCVTEESAISVTFEMLAASGVPTKNDCPYPTLAGADAIVGREP*
Ga0137383_104606562	3300012199	Vadose Zone Soil	LGFEGAVTFRPPVACENRGRLMRWPMLKPCVTEESAISVTFEMLVALGVPTKNDSPYPALVGAEVIVGREPWNR*
Ga0137365_100543694	3300012201	Vadose Zone Soil	VLGFEGAVTSRPSVACENRGRLMRWPILKPCVTEESAISVTFEMLVASGVPTKNDCPYPTFVGADVIVGREPWNR*
Ga0137399_112279691	3300012203	Vadose Zone Soil	MLPFDGAVTLSPPVASEKDGRMMRCPMLKPWVTEGSASSVTFEMLVASGVPTKNDCPYPTLAGAELIVGRKPLNR*
Ga0137362_100490092	3300012205	Vadose Zone Soil	LGFEGAVTFTPPVACENRGRLIRWPMLNPCVTDDSAINVTFEMFAASGVPTKNDCPYATLAGADVIVGRAP*
Ga0137362_106722151	3300012205	Vadose Zone Soil	MLGFEGAVTFRPPVACENRGRLMRWPMLKPCVTEESAISVTVEMLVALGVPTKNDCPYPTFAGADVIVGREPWNR*
Ga0137376_102508051	3300012208	Vadose Zone Soil	VLRLEGAVTLRPPVACENAGRLMRWPILKPCVTEESAINVTFEMLVMSGVPTKNECPYRTFLGA
Ga0137376_110022231	3300012208	Vadose Zone Soil	LGFEGVVTFRPPVVCENEGRIMRWPMLKPCVTEESAISVTFEMLVASGVPTKNDCPYATLAGAEVIVGREPWNRYGGE*
Ga0137379_100312754	3300012209	Vadose Zone Soil	VLLGFEGAVTFRPPVACENTGRLMRWLILKPCVTEGSAISVTFEMFVASGVPTKNDCPYLTLVGADVIVGREPWNR*
Ga0137379_110024611	3300012209	Vadose Zone Soil	VLLGVEGAVTFRPPVACEKLGRLMRCPMLKPWVTEESAISVTLEMFAASGVPTKNDCPYTTLVGADVIVGREPWKR*
Ga0137378_100058155	3300012210	Vadose Zone Soil	VLEFEGAVTFRPPVACENSGRLMRWPMLKPCVTEETAINVTFEMLVASGVPTKNDCPYATFVGADVIVGREPWNRYGGE*
Ga0137370_100599643	3300012285	Vadose Zone Soil	VVLGFEGAVTFRPPVACENRGRLMRWPIFKPCVMDESAISVTFEMLAAFGVPTKNDCPDATLVGADVIVGREPWNRYGGE*
Ga0137372_101014973	3300012350	Vadose Zone Soil	VVLGVEGAVTFRPPVACEKLGRLMRCPMLKPWVTEESAISVTLEMFAASGVPTKNDCPYTTLVGADVIVGREPWKR*
Ga0137371_106868772	3300012356	Vadose Zone Soil	LGFEGAVTFRPPVACENRGRLMRWPMLKPCVTEESAINVTLEMLPALGVPTKNDSPYATLVGAEVIVGREPWNR*
Ga0137384_101175993	3300012357	Vadose Zone Soil	VLEFEGAVTFRPPVACENRGRLMRWPMLKPCVTEETAINVTFEMLVASGVPTKNDCPYATFVGADVIVGREPWNRYGGE*
Ga0137384_107605401	3300012357	Vadose Zone Soil	LGFEGTVTFRPPVACENRGRLMRWPMLKPCVTEESASSVTFEMLVASGVLTKNDCPYATLVGADVIVGREP*
Ga0137385_100638481	3300012359	Vadose Zone Soil	VLGFEGAVTFRPPVACENTGRLMRWLILKPCVTEGSAISVTFEMFVASGVPTKNDCPYLTLVGADVIVGREPWNR*
Ga0137358_102712973	3300012582	Vadose Zone Soil	LGFEGTVTFRPPAAWENRGRLMRWPMLKPCVTEESAISVTVEMLVALGVPTKNDCPYPTFAGADVIVGREPWNR*
Ga0137358_105408072	3300012582	Vadose Zone Soil	LGFEGTVTFRPPVACENTGRLMRWPMLKPCVTEESAISVTVEMLAALGVPTKNDCPYPTLAGAELIVGREPLNR*
Ga0157299_100339101	3300012899	Soil	LGLEGAVTFRPPVSCENRGRLMRWPMLKPCVVEESVISVTLEMLAASGVPTKNDCPYPTLAGAELIVGREPWNR*
Ga0137359_100306209	3300012923	Vadose Zone Soil	LGFEGAVTFTPPVACENRGRLIRWPMLNPCVTDDSAINVTFEMFAASGVPTKNDCPYATLAGADVIVGRAPLKR*
Ga0164300_104042191	3300012951	Soil	VVLGFEGAVTLRPPVACENNSRLMCWPMLKPCVTEPSAMNVTCEMLVASGVPTKNDCSYVMPVGADVIVGREPLNR*
Ga0134078_101201811	3300014157	Grasslands Soil	LGFEGAVTLRPPVACENRGRLMRWPMLKPCVTEESASSVTFEMLVALGVPTKNDCPYRTLVGADVIVGREPWNR*
Ga0134079_100808571	3300014166	Grasslands Soil	LGPEGAVMFRPPVACENRGRLMRWPILKSCVTEESAISVTLEMLVASGVPTKNDCPYPTLVGADVIVGREPWNR*
Ga0134073_101485771	3300015356	Grasslands Soil	LGPEGAVMFRPPVACENRGRLMRWPILTPCVTEESAISVTCEMLVALGVPTKNDCPYATLVGADVIVGREPWNR*
Ga0134072_102941511	3300015357	Grasslands Soil	LGPEGAVMFRPPVACENRGRLMRWPILKSCVTEESAISVTLEMLVASGVPTKNNCPYPTLVGADVIVGREPWNR*
Ga0132257_1041596102	3300015373	Arabidopsis Rhizosphere	LAFEGAVTFRAPLACEKAGRLIRWPILKPCVTEESAISVTFEMLAASGVATKNDCPYVTFVGAEVIVGRA
Ga0184604_101281481	3300018000	Groundwater Sediment	MLPFDGAVTLSPPVASEKDGRMMRCPMLKLWVTEGSASSVTFEMFGASGVPTKNDCPYGMLAGADAIVGREPLNR
Ga0184608_101521722	3300018028	Groundwater Sediment	LRFEGAVTFRPPVACENSGRLMRWPILKPCVTEDSAISVTLEMLAALGVPTKNDCPYPTLTGADVIVGREPLNR
Ga0184621_100453301	3300018054	Groundwater Sediment	VLGFEGAVTFRPLVACENRGRLMRWPMLKPCVAEESAISVTFEMLVALDVPTKNDCPHPTLVGADVIVGRE
Ga0184621_100764182	3300018054	Groundwater Sediment	LRFEGAVTFRPPVTCENSGRLMRWLMLKPCVTEESGISVTFEMLVALGVPTKNDCPYATFVGAEVIVGREPWNR
Ga0184617_10830791	3300018066	Groundwater Sediment	LEFEGAVTFRPPAAWENRGRLMRWPMLKPCVTEESAISVTFEMLAASGVPTKNDCPYATLVGADVIVGREPWNR
Ga0184618_104303761	3300018071	Groundwater Sediment	LGFEGAVTVRPPVACENRGRLMRWPMLKPCVTEESAISVTFEMLVASGVPTKNDCPYATLVGADVIVGREPLNR
Ga0184609_103400952	3300018076	Groundwater Sediment	LGFEGAVTLRPPVACENRGRLMRWPMLKPCVTEESAISVTFEMLVALGVPTKNDCPHPTLVGADVIVGREPLNR
Ga0066667_111388041	3300018433	Grasslands Soil	LAFEGAVTFRPPVACENRGRLMRWPMSKPCVTDESAISVTFEMLAAFGVPTKNDCPDATLVGADVIVGREPWNR
Ga0066667_115987061	3300018433	Grasslands Soil	LGFKGAVTVRPPVACENKGRLMRWLILKPCVTEESAISVTFEMLVAAGVLAKNVCTYQTFVGADVIVEPKLCNKYD
Ga0190274_131542091	3300018476	Soil	LGFEGDVTLRPPAACENKGRLMRCPMLKPCVTEDSAIRVILEMLAPLGVPTKNDCPYPTLAGADVIVGREPWNR
Ga0173481_106897541	3300019356	Soil	LGFEGAVTFRPPVTCWNQGRLMRWPMLKSCVTEESAISVTLEMLVASGVPTKNDCPYATLAGADVIVGRE
Ga0193727_10100373	3300019886	Soil	VLGFEGAVTFRPPVACENRGRLMRWPMLKPCVTEESAISVTFEMLVALGVPTKNDCPYPTLVGADVIVGREPLNR
Ga0193729_11865073	3300019887	Soil	LEFEGDVTFRPPVACENRGRLMRWPMLKPCVTEESAISVTLETLAASGVPTKNDWPYATFVGADVIVGREPW
Ga0193751_10190793	3300019888	Soil	LGFEGAVTFTPPVACENRGRLIRWPMLNPCVTDDSAINVTFEMFAASGVPTKNDCPYATLAGADVIVGRAP
Ga0193731_11501781	3300020001	Soil	LGFEGAVTFRPPVACENRGRLMRWLMLKPCVTEESAISVTFEMLVASGVPTKNDCPYATLVGADVR
Ga0193730_10609401	3300020002	Soil	LGFEGDVTFRPPVACENIGRLMRWLILKPCVTEGSAISVTFEMLAASGVPTKNDWPYPTLAGADVIVGREPWKR
Ga0193735_11027753	3300020006	Soil	LGFEGDVTFRPPVACENRGRLMRWPMLKPCVTEESAISVTVEMLVASGVSTKNDCPYPTLVGADM
Ga0210381_101154381	3300021078	Groundwater Sediment	LGFEGAVTLRPPVACENRGRLMRWPMLKPCVTEESAIRVTFEMLVALGVPTKNDCPYPTLVGADVMVGREPWNR
Ga0193719_101481531	3300021344	Soil	LEFEGAVTFRPPVACENRGRLMRWLMLKPCVTEESAISVTFEMLVASGVPTKNDCPFATLAGADVIVGREPLNR
Ga0193695_10834031	3300021418	Soil	LGFEGAVTFTPPVACENRGRLIRWLNPCVTDDSAINVTFEMFAASAVPTKNDCPYATLAGADVIVGRAP
Ga0222623_104127171	3300022694	Groundwater Sediment	LGFEGAVTFRPPVACENRGRLIRWPMLKPCVTEESAISVTFEMLVALGVPTKNDCPYATLVGADVIVGREPWNR
Ga0222622_110052842	3300022756	Groundwater Sediment	MLPFDGAVTLSPPVASEKDGRMMRCPMLKPWVTEGSASSVTFEMFVASGVPTKNDCPYPTLAGAELIVGREPLNR
Ga0207692_108022432	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	LSPPVASEKYGRMMRCPMLKLWVTEGSASSVTFEMFVASGVPTKNDCPYGMFAGADAIVGREPLNR
Ga0207684_101147734	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	LGFEGAVTFRPPVACENRGRLIRWPMLKPCVTEESATSVTFEMLVALGVPTKNDCPYATLVGADVIVGREPLNR
Ga0207663_104754151	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	LPFNGAVTLSPPVASEKDGRMMRCPMLKLWVTEGSASSVTFEMFVASGVPTKNDCPYVTFVGAEVIVGRAPLNR
Ga0207706_115392601	3300025933	Corn Rhizosphere	LGFEGAVTFKPPVTCENRGRLMRWPMLKPCVTEESAISVTFEMLAASGVPTKNDCPYKTLAGADVIAGRGPWNR
Ga0207665_113581081	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	LSPPVASEKDGRMMRCPMLKLWVTEGSASSVTFEMFVASGVPTKNDCPYGMLAGAEEIVGREPLNR
Ga0207658_112390282	3300025986	Switchgrass Rhizosphere	VLAFEGAVTFRAPLACEKAGRLIRWPILKPCVTEESAISVTFEMLAASGVATKNDCPYVTFVGAEVIVGRAPLNR
Ga0209154_12063472	3300026317	Soil	LGFKGAVTVRPPVACENKGRLMRWLILKPCVTEESAISVTFEMLVASGVPTKNDCPYPTLVGADVIVGREPWNR
Ga0209161_105736881	3300026548	Soil	LGPEGAVMFRPPVACENRGRLMRWPILTPCVTEESAISVTLEMLVASGVPTKNDCPYPTLVGADVIVGREPWNR
Ga0207495_1038062	3300026761	Soil	LGFEGAVTFRPPVACENSGRLMRWPMLKPCVVEESAISVTLEMLAASGVPTKNDCPYPTLAGAEVIVGREPRNR
Ga0209971_10215021	3300027682	Arabidopsis Thaliana Rhizosphere	MLRLDGAVTFRPPVACENTGRLIRWPMLKPCVTEESAISVTLEMLVASGVPTKNDCPYATLAGADVIVGREPWNR
Ga0209689_10925131	3300027748	Soil	LGFEGAVTFRPPVACEKLGRLMRCPMLKPWVTEESAISVTLEMFAASGVPTKNDCPYPTLVGADVIVGREPWNR
Ga0307305_105477461	3300028807	Soil	LGFEGAVTFRPPVACENRGRLMRCPMLKPCVTEESAISVTLEMLVASGVPTKNDCPFATLAGADVIVGREPLNR
Ga0307302_101336811	3300028814	Soil	LGFEGAVTFRPPVACENRGRLMRWPMLKPCVAEESAISVTFEMLVALGVPTKNDCPHPTLVGADVIVGREPLNR
Ga0307278_100270421	3300028878	Soil	VLGFEGAVTLRPPVACENRGRLMRWPMLNPCVTEESAISVTFEMLVALGVPTKNDCPYPTLVGADVIVGREPLNR
Ga0307277_103265612	3300028881	Soil	MLEFEGAVTFRPPVVCENSGRLMRWLILKPWVTEEFAISVTLEMLVASGVPTKNDCPYPRLVGADVIVGREPRNRYGGE
Ga0170824_1110648282	3300031231	Forest Soil	LGFKGAVTFRPPVACENRGRLMRWPILKPCVTEESFISVTFEMLAASGVPKKKVCPYATLAGADVIVGREPWNR
Ga0170824_1144582211	3300031231	Forest Soil	LGFEGAVTFTPPVACENEGRIMRWPILKPCVTEESAISVTLEMLVASGVPTKNDCPYPTLVGADVIVGREPWNR
Ga0170824_1235893701	3300031231	Forest Soil	LGSEGAVTFTPPVACENEGRTMRWPILKSCVTEESAISVTLEMLVASGVPTKNDCPYPTLVGADVIVGREPWNR
Ga0170820_110942401	3300031446	Forest Soil	LGFKGAVTFRPPVACENRGRLMRWPILKPCVTEESFISVTFEMLAASGVLTKNDCPYATLAGADVIVGREPWNR
Ga0310813_112086631	3300031716	Soil	MLPFDGAVTLSPPVASEKDGRMMRWLMLKLWVTEGSASSVTFEMFVASGVPTKNDCPYGMLAGADAIVGREPLNR
Ga0310810_110446751	3300033412	Soil	MLPFDGAVTLSPPVASEKDGRMMRCPMLKLWVTEGSASSVTFEMFVASGVPTKNDCPYGMLAGADAIVGREPLNR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F085420

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences